TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_X Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 17718850 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:16402013 original size:7 final size:7 Alignment explanation
Indices: 16401997--16402013 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 16401987 TGTGTTCTTC 16401997 TCATTAT 1 TCATTAT * 16402004 TCATTGT 1 TCATTAT 16402011 TCA 1 TCA 16402014 CCGACATACA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.24, C:0.18, G:0.06, T:0.53 Consensus pattern (7 bp): TCATTAT Left flanking sequence: Indices 16401497 -- 16401996 TTTTAAAAAGCCGAGAGCTGATATCTTGGTAATTTTAACCAAAAAATGTGTTTTCTTGTACACTT GTGAATTGAATGATTTAGTTTAAACATTTATCGATACATTTTTTTTTCTTAAAAGTATCAAGAGC AATTTAGACGTTTACAAAATATTCCTACAAAGAGTGAACTTTTCGGTTTTTGGCAACTGAAATTC TCAGGCCATATTTCAAAACAAGTACTAATTCTATTCACGTTTCCCCTACACCTACACCAAAAATG TACAAATTACAACCAGATAATCCAAAAATCATACCTGTCCCTTGACTAGACGATCCGCCAGCGCC GAAGATTCCGCTTCCAGATAATCGATTCGTTGACGCAGAAGGCGATTTTCGGTACGAAGTCGCTG AAAAATTGTCGAAATTTAATACTATGCAAGTACCTCCTCCTCCATCATCGTGACCATATGATTTT TCCATTTTTCTTTTCATGTATTTACTCCCACACCGTGTGTTCTTC Right flanking sequence: Indices 16402014 -- 16402513 CCGACATACATACATATACACACACACCGACACAACAAAATTGTTGCGGGAAGTTCAATGTGGCG CGGCGTTCAAACACGAAAAGCTCGTCAACCTATGCTGGTATGCTCCTCCAACTCGCCCCCCACCT CGGGCCCCCGAGGTGTTTCAACATATGTCTTGTATTTGTATGAGAATGTTGGGTGTTGGAGAGAG GAGCGGCCAACAGTGTAATTGAGTAATTAATGATGATGATCATCTTCATCATCGTGGGGCACAAA ACGTCTCATATGTGAACGTCCCCCTATGCCTCTGAACCCAGAGCTCTAACCTCTTCTTGGGACAC AACAACAATCCAGAGTCATTTATTTCAGGGGGTTAAAGTGAAAGGGTGAATGCGCTGCTCCTTTT TCCGTACTCCATGAATATGGAATTAGAGGGCTGTGCTTCCCCTCATCAGTCATTGTCTCTTCTGA AGGTTAGGTGTGACAAATTTGCTATTTCAAGTCGTCACCCCCGAA Found at i:16403290 original size:7 final size:7 Alignment explanation
Indices: 16403274--16403295 Score: 37 Period size: 7 Copynumber: 3.1 Consensus size: 7 16403264 ATTTTGTGTG * 16403274 AAGAATT 1 AAGAAAT 16403281 AAGAAAT 1 AAGAAAT 16403288 AAGAAAT 1 AAGAAAT 16403295 A 1 A 16403296 CAAAGAAAGA Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 7 14 1.00 ACGTcount: A:0.68, C:0.00, G:0.14, T:0.18 Consensus pattern (7 bp): AAGAAAT Left flanking sequence: Indices 16402774 -- 16403273 ATAAACCGATGATAGACGTGGTGGAGAGACAGAGATGGCAAAAACCACTTATAGAGACCAATTTC TCTCGTTTTCTTTTCCCTATCCATTCAATTTTTTTTATTTTATTTTACGATCAAATGTCAAGACA AATATTTCTCGGAAAAGGTGCGGAGGTAGAAAGTTAGGTTTTTTTTTCCTTGAATTAAAAAAAAA CTTGGTTTTTTGATACACTCAAGTAAATAGTAACTAATTGTAACAGTACGTTAATTAGCTCAAAT TTTCCCCCAATATTTTACCTTTTTCGTCCAAACAAATCGCTGTTTTCCAATTTGGGCGCGGGTTC TCATGACTGGAAATTAAAAAAGACGAGGTAAAAACGTGCGAACAACTGGAAGAAAATTGGGAGTG AGGGGGGGGGAGGGAAGAGCGTAATGTGTTGGTCACTCACTCAAGTGATGAATGAAGTAATATTA AAGAGAGAGAGAATGAAAAGAAGGGACGCGTAAGAATTTTGTGTG Right flanking sequence: Indices 16403296 -- 16403795 CAAAGAAAGATGAGAGAAGGTGACACAAGCTGAAATGCAGAGAGAATCAGGCAGAGATAAAGAGA GAGAGAGAGAGAGAGGAAGAAAGGTGACGGAATGATAATTAGTAGCAAAAGTGGAAGGAAATGAT GATGCTTTTGATGATGGAAAAAGATGAAAAAGCTGAAGAAGATGAAGAAGAAGAAGAAGCTAGTC GAAAAATGTGGTTTCAGCGCTGGGAGCGCCCGCCGCCGCCGACGCCGCTGCCACCAGCGCCACCC GGTCGGGTCGCGATCTATTGAGACGAAAAGGGCGGGTCGGACGACTCCGCCCAGTTTTTGCGCTC GGTGGTGGTGGCGGCGGCGTGTCCAGCGTACTTTTGATTTGTTTCTGTTTTTGGGAAATATTCTG GAATTACACGACACTAATTTTGGGGAAAAAACATCTAGTCCTACCAGTTGCCCATCCATTGTGAG GGCAGTTTGAAAATTTTCCAAGGTAAAGTTGTGTCCTAAATTCGG Found at i:16403454 original size:9 final size:9 Alignment explanation
Indices: 16403442--16403484 Score: 58 Period size: 9 Copynumber: 4.8 Consensus size: 9 16403432 TTTGATGATG * 16403442 GAAAAAGAT 1 GAAGAAGAT * * 16403451 GAAAAAGCT 1 GAAGAAGAT 16403460 GAAGAAGAT 1 GAAGAAGAT * 16403469 GAAGAAGAA 1 GAAGAAGAT 16403478 GAAGAAG 1 GAAGAAG 16403485 CTAGTCGAAA Statistics Matches: 30, Mismatches: 4, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 9 30 1.00 ACGTcount: A:0.60, C:0.02, G:0.30, T:0.07 Consensus pattern (9 bp): GAAGAAGAT Left flanking sequence: Indices 16402942 -- 16403441 TTTTTTTTTCCTTGAATTAAAAAAAAACTTGGTTTTTTGATACACTCAAGTAAATAGTAACTAAT TGTAACAGTACGTTAATTAGCTCAAATTTTCCCCCAATATTTTACCTTTTTCGTCCAAACAAATC GCTGTTTTCCAATTTGGGCGCGGGTTCTCATGACTGGAAATTAAAAAAGACGAGGTAAAAACGTG CGAACAACTGGAAGAAAATTGGGAGTGAGGGGGGGGGAGGGAAGAGCGTAATGTGTTGGTCACTC ACTCAAGTGATGAATGAAGTAATATTAAAGAGAGAGAGAATGAAAAGAAGGGACGCGTAAGAATT TTGTGTGAAGAATTAAGAAATAAGAAATACAAAGAAAGATGAGAGAAGGTGACACAAGCTGAAAT GCAGAGAGAATCAGGCAGAGATAAAGAGAGAGAGAGAGAGAGAGGAAGAAAGGTGACGGAATGAT AATTAGTAGCAAAAGTGGAAGGAAATGATGATGCTTTTGATGATG Right flanking sequence: Indices 16403485 -- 16403984 CTAGTCGAAAAATGTGGTTTCAGCGCTGGGAGCGCCCGCCGCCGCCGACGCCGCTGCCACCAGCG CCACCCGGTCGGGTCGCGATCTATTGAGACGAAAAGGGCGGGTCGGACGACTCCGCCCAGTTTTT GCGCTCGGTGGTGGTGGCGGCGGCGTGTCCAGCGTACTTTTGATTTGTTTCTGTTTTTGGGAAAT ATTCTGGAATTACACGACACTAATTTTGGGGAAAAAACATCTAGTCCTACCAGTTGCCCATCCAT TGTGAGGGCAGTTTGAAAATTTTCCAAGGTAAAGTTGTGTCCTAAATTCGGGACCGTTCAATAAA AAGTTTTAAAAATTTTTTAAAGGAACTCTCATTAAAGGTGGAGTACCGAAATTTGAGACTTTGCT TTTTTAGACCCAAAATGATGCAAAACTTCCAAATTTCGTAATGAGACGATCAAAAAATTTCTCAA ACAAAAGTTATGGCCGCTCAAAGTTTTGGAAAAATTATATATTTT Found at i:16403825 original size:9 final size:10 Alignment explanation
Indices: 16403806--16403830 Score: 36 Period size: 10 Copynumber: 2.5 Consensus size: 10 16403796 GACCGTTCAA 16403806 TAAAAAGTTT 1 TAAAAAGTTT * 16403816 TAAAAATTTT 1 TAAAAAGTTT * 16403826 TTAAA 1 TAAAA 16403831 GGAACTCTCA Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 10 13 1.00 ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44 Consensus pattern (10 bp): TAAAAAGTTT Left flanking sequence: Indices 16403306 -- 16403805 TGAGAGAAGGTGACACAAGCTGAAATGCAGAGAGAATCAGGCAGAGATAAAGAGAGAGAGAGAGA GAGAGGAAGAAAGGTGACGGAATGATAATTAGTAGCAAAAGTGGAAGGAAATGATGATGCTTTTG ATGATGGAAAAAGATGAAAAAGCTGAAGAAGATGAAGAAGAAGAAGAAGCTAGTCGAAAAATGTG GTTTCAGCGCTGGGAGCGCCCGCCGCCGCCGACGCCGCTGCCACCAGCGCCACCCGGTCGGGTCG CGATCTATTGAGACGAAAAGGGCGGGTCGGACGACTCCGCCCAGTTTTTGCGCTCGGTGGTGGTG GCGGCGGCGTGTCCAGCGTACTTTTGATTTGTTTCTGTTTTTGGGAAATATTCTGGAATTACACG ACACTAATTTTGGGGAAAAAACATCTAGTCCTACCAGTTGCCCATCCATTGTGAGGGCAGTTTGA AAATTTTCCAAGGTAAAGTTGTGTCCTAAATTCGGGACCGTTCAA Right flanking sequence: Indices 16403831 -- 16404330 GGAACTCTCATTAAAGGTGGAGTACCGAAATTTGAGACTTTGCTTTTTTAGACCCAAAATGATGC AAAACTTCCAAATTTCGTAATGAGACGATCAAAAAATTTCTCAAACAAAAGTTATGGCCGCTCAA AGTTTTGGAAAAATTATATATTTTTTAGCTAAAACCTCAAACTTTGGCAACTTTTCAGTGTTGCA GCGGTTGGAACATTGCATCATATTTGTCACCCAAAAAGCAACTCAATCAACGAAAAAACGCGTAA TAAAATCCAAAACATGTATTAAAGAGTGCTAATAAAATTAAAATTAATAGTAAGTTCCAATTGCT GCAACACTGAAAAGTTGTCAACATTTAAGATTTTACCTAAAAATATACCATTTTTCCAAAACTTT GAGCGGTCATAACTTATCTTTTGAAAAATTTTTAGAGCGTCTCATTATAAAATTTGGTAGTTTTG GAATAGTTTGGGTCCAAAAAGTAAAGTCTCAAATTTTGGTATTCC Found at i:16407151 original size:10 final size:10 Alignment explanation
Indices: 16407132--16407169 Score: 67 Period size: 10 Copynumber: 3.7 Consensus size: 10 16407122 AGCAGTTAAA 16407132 AGCCTCACTTG 1 AGCCT-ACTTG 16407143 AGCCTACTTG 1 AGCCTACTTG 16407153 AGCCTACTTG 1 AGCCTACTTG 16407163 AGCCTAC 1 AGCCTAC 16407170 AGAAGACTGT Statistics Matches: 27, Mismatches: 0, Indels: 1 0.96 0.00 0.04 Matches are distributed among these distances: 10 22 0.81 11 5 0.19 ACGTcount: A:0.21, C:0.34, G:0.18, T:0.26 Consensus pattern (10 bp): AGCCTACTTG Left flanking sequence: Indices 16406632 -- 16407131 GCATACATTGACGTGTCGAATCCCATATTATTAAAATGAGTATACAAATCTGGCATTTGATCCTG CACGAGACACTCCAACTGGAACATGCACAATCCTAAGTCTGTCATTGTTGGCTTGTAGAGCTCGC GGAGCCGATAGTTTTCCATGAGGCTGACGAGCACAGCAAACGCCTCTTCTTCGGGCATCTGGAGG AGCAAGAGACCAACAATGAAGGCACTACCCTGACAGTACCCAACTTCCTTGTCGTGAACTGAATA GGCTTTGATAACGTTGAACAGAAGTGATTGGCCTCGTTCGCCATCTTTGAAAAAGTCGAGCTCTG GGTAGGTACGGGGAATGTCGCGTTGAATAACCTAAAACAAAAAAAAATTAGGATTAAAAAATTTG GTTTTGAGTAGAAGGCTTTATGGTTGCTCTACACAGCCCAAAAATCCACAATTTTTTTTAGAATT GCTGAAATGTTACAACTTTCACTGAACTGTGTTTAAGCAGTTAAA Right flanking sequence: Indices 16407170 -- 16407669 AGAAGACTGTAAAATTTCTAGGAAATACAGTAGCTTTTCGGCATTTGACTCTAGCTTCTCGCCAA AGTTTGGCCCAAAAAATATTAACTTGGATCAGATGTTGGCTAAACTTGGGCAAAAGTTGGGCAAG ACTTCGACAAAACTTGGTTTGGGCCGAAGTTAAAATTTGGCCCAAACGTTTTTTTTTGTTTTGTT TCAAACTTGGGTAGAAGCTTGGCAAGAGTTGGGTGAAACCTAAATTACTACTCTATCAGAACTTC AAAATGCTTCAGACAACTTCAAAATTTTCAGTCGAAAGTGAGGTAAACTGCAAAATTTTTGGAAA ATCGTAACCCTATAGAATAAAGCATTGAGTGAGTGCCTTTTTTGACTATAAATAAAGAAAATTCT GAAAGATTCAATTTTTTTCATCGCTGGCTCTTCCTCACAATTCAACTCAGAAATCAATTCTAGGC AAAAATTCAATCGAATTACCCTCACCTTCTCATAAACCGAAGACT Found at i:16408480 original size:8 final size:8 Alignment explanation
Indices: 16408467--16408484 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 16408457 GAAAGGCGGC 16408467 AATTCAGA 1 AATTCAGA * 16408475 AATTCATA 1 AATTCAGA 16408483 AA 1 AA 16408485 AATTTGGTTG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.56, C:0.11, G:0.06, T:0.28 Consensus pattern (8 bp): AATTCAGA Left flanking sequence: Indices 16407967 -- 16408466 GAACCAGTCTTCTTGGAGGCAACACTTCGAGAGTCTTCCTCATTTGATCTGAAAAAGTCAATGTT TCCAATTTTGAAAATTTGTTTTATATGTCATTATTATTCCATCTCTTCATTGCGTTCTCAGTATG TTTGACTTGCGAAAACAAATTGATTGTGCAGATTGAGAAAAACTATGGTATTTACTATTTTTTGT TCGATTCGGCTTGGTCAATGTTTGACCAACTGCTTTTCATGACTATAAGCACGCGGGAATGTGCA CTAAAATGGAAAGGAAATTTTTGGGAAAAATTGAAGTGGGGATTGAAAGTTTGAGAAAATATGGT AGGAAAATTGGAATTTTTGTACAAAAAATAACTTTATTAATTCTCAAACTGTTTTCAAACTGTTT TTGAATTCTTCAAAATTAAAATTGATTCATAAATCAATAAAGTTTTAGCAAACAAATTTGAATCG CCGACTTTCAAAACTTTCCATAATTGTCATTTTGCGAAAGGCGGC Right flanking sequence: Indices 16408485 -- 16408984 AATTTGGTTGATAAAAAAAATTCAAAAAAAAGTAACTTCAGTTGTAGTTAGTTTTTTTTTCAAAA GAAATGTAATCTAGAAATTTAAACATCTCTTTTTGGGAAGTTGGAATATTTTTGACAATACAGAA ACTTGACAATTGTCAGATGTATGAAAAAAAGTTCGGATCACTTAACTTTAATTGGTGTCCATCCC TGTTTTGAGTTAAAGCTCTGATTCGGAAAAAAAACCAAATGTGCACAATTGCTCCAAAAAGTTTC AAAAAAAAATTCGAAAAAAATCTCACTTGTTCAGCTGCTCCATCTTGGCAAGCAAATCGACTTCA TTTAGCGATACTGGGGCTCCTGTCTCGCACGGCTCACCACACTCGGTGTCTGCGGATCCTGAAAA AAAAACAAAATCGTGTACTACATACTTCAAGGGGGCTCATTTCAAAAATGTCAGTCAACTTAACC TAGGAATGAAAAGTGAGAAAAGAGAAAAAAACGAAAGAACGCAAC Found at i:16408961 original size:9 final size:9 Alignment explanation
Indices: 16408947--16408969 Score: 32 Period size: 9 Copynumber: 2.6 Consensus size: 9 16408937 ACCTAGGAAT * 16408947 GAAAAGTGA 1 GAAAAGAGA 16408956 GAAAAGAGA 1 GAAAAGAGA * 16408965 AAAAA 1 GAAAA 16408970 ACGAAAGAAC Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.70, C:0.00, G:0.26, T:0.04 Consensus pattern (9 bp): GAAAAGAGA Left flanking sequence: Indices 16408447 -- 16408946 GTCATTTTGCGAAAGGCGGCAATTCAGAAATTCATAAAAATTTGGTTGATAAAAAAAATTCAAAA AAAAGTAACTTCAGTTGTAGTTAGTTTTTTTTTCAAAAGAAATGTAATCTAGAAATTTAAACATC TCTTTTTGGGAAGTTGGAATATTTTTGACAATACAGAAACTTGACAATTGTCAGATGTATGAAAA AAAGTTCGGATCACTTAACTTTAATTGGTGTCCATCCCTGTTTTGAGTTAAAGCTCTGATTCGGA AAAAAAACCAAATGTGCACAATTGCTCCAAAAAGTTTCAAAAAAAAATTCGAAAAAAATCTCACT TGTTCAGCTGCTCCATCTTGGCAAGCAAATCGACTTCATTTAGCGATACTGGGGCTCCTGTCTCG CACGGCTCACCACACTCGGTGTCTGCGGATCCTGAAAAAAAAACAAAATCGTGTACTACATACTT CAAGGGGGCTCATTTCAAAAATGTCAGTCAACTTAACCTAGGAAT Right flanking sequence: Indices 16408970 -- 16409469 ACGAAAGAACGCAACCAGCCACAAGTTTGCTGCCAAATATACACGCAGTAGTAGTAGTAGCCGGT GCAAAAAAAAAGTGTGGGGGGGATGAGGTCTCTAATAAACGTTTTTTCCACTCTAACGCCTCTCT CATTCCACATTTACAAAAAAGCCAATAGATAGTTTCGAAAAAGAGTGGGAGGACATTCATTTTGA AATGACAAAGAACAACAATCGGTTAGTTATAATATGAACAAAAGAGACTGAAAAAGGGCGACGGC AGTTGGTGGCGTGGTTGAGAATGAGACAAGTGGAAAATAGAGCTAAAATAGAGAGAAGTGTATGC AACAAATATGACAAATGACGACGACACCCCCCATCTCTTCTCAACCCCTCATGTCCATTTTTGCC ATCGTCGCCGCCGTCGCCGCCGCCGCCGCCATTCCGAAACAAACCAACGCCGGTTCACCCTAAAG TCGTGATGCATTATGCCAAGACAAGGCTTACATAAAAGTGGAGAG Found at i:16408966 original size:7 final size:7 Alignment explanation
Indices: 16408954--16408967 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 16408944 AATGAAAAGT 16408954 GAGAAAA 1 GAGAAAA 16408961 GAGAAAA 1 GAGAAAA 16408968 AAACGAAAGA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00 Consensus pattern (7 bp): GAGAAAA Left flanking sequence: Indices 16408454 -- 16408953 TGCGAAAGGCGGCAATTCAGAAATTCATAAAAATTTGGTTGATAAAAAAAATTCAAAAAAAAGTA ACTTCAGTTGTAGTTAGTTTTTTTTTCAAAAGAAATGTAATCTAGAAATTTAAACATCTCTTTTT GGGAAGTTGGAATATTTTTGACAATACAGAAACTTGACAATTGTCAGATGTATGAAAAAAAGTTC GGATCACTTAACTTTAATTGGTGTCCATCCCTGTTTTGAGTTAAAGCTCTGATTCGGAAAAAAAA CCAAATGTGCACAATTGCTCCAAAAAGTTTCAAAAAAAAATTCGAAAAAAATCTCACTTGTTCAG CTGCTCCATCTTGGCAAGCAAATCGACTTCATTTAGCGATACTGGGGCTCCTGTCTCGCACGGCT CACCACACTCGGTGTCTGCGGATCCTGAAAAAAAAACAAAATCGTGTACTACATACTTCAAGGGG GCTCATTTCAAAAATGTCAGTCAACTTAACCTAGGAATGAAAAGT Right flanking sequence: Indices 16408968 -- 16409467 AAACGAAAGAACGCAACCAGCCACAAGTTTGCTGCCAAATATACACGCAGTAGTAGTAGTAGCCG GTGCAAAAAAAAAGTGTGGGGGGGATGAGGTCTCTAATAAACGTTTTTTCCACTCTAACGCCTCT CTCATTCCACATTTACAAAAAAGCCAATAGATAGTTTCGAAAAAGAGTGGGAGGACATTCATTTT GAAATGACAAAGAACAACAATCGGTTAGTTATAATATGAACAAAAGAGACTGAAAAAGGGCGACG GCAGTTGGTGGCGTGGTTGAGAATGAGACAAGTGGAAAATAGAGCTAAAATAGAGAGAAGTGTAT GCAACAAATATGACAAATGACGACGACACCCCCCATCTCTTCTCAACCCCTCATGTCCATTTTTG CCATCGTCGCCGCCGTCGCCGCCGCCGCCGCCATTCCGAAACAAACCAACGCCGGTTCACCCTAA AGTCGTGATGCATTATGCCAAGACAAGGCTTACATAAAAGTGGAG Found at i:16408980 original size:8 final size:8 Alignment explanation
Indices: 16408965--16408980 Score: 25 Period size: 8 Copynumber: 2.0 Consensus size: 8 16408955 AGAAAAGAGA 16408965 AAAAAACG 1 AAAAAACG * 16408973 AAAGAACG 1 AAAAAACG 16408981 CAACCAGCCA Statistics Matches: 7, Mismatches: 1, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 8 7 1.00 ACGTcount: A:0.69, C:0.12, G:0.19, T:0.00 Consensus pattern (8 bp): AAAAAACG Left flanking sequence: Indices 16408465 -- 16408964 GCAATTCAGAAATTCATAAAAATTTGGTTGATAAAAAAAATTCAAAAAAAAGTAACTTCAGTTGT AGTTAGTTTTTTTTTCAAAAGAAATGTAATCTAGAAATTTAAACATCTCTTTTTGGGAAGTTGGA ATATTTTTGACAATACAGAAACTTGACAATTGTCAGATGTATGAAAAAAAGTTCGGATCACTTAA CTTTAATTGGTGTCCATCCCTGTTTTGAGTTAAAGCTCTGATTCGGAAAAAAAACCAAATGTGCA CAATTGCTCCAAAAAGTTTCAAAAAAAAATTCGAAAAAAATCTCACTTGTTCAGCTGCTCCATCT TGGCAAGCAAATCGACTTCATTTAGCGATACTGGGGCTCCTGTCTCGCACGGCTCACCACACTCG GTGTCTGCGGATCCTGAAAAAAAAACAAAATCGTGTACTACATACTTCAAGGGGGCTCATTTCAA AAATGTCAGTCAACTTAACCTAGGAATGAAAAGTGAGAAAAGAGA Right flanking sequence: Indices 16408981 -- 16409480 CAACCAGCCACAAGTTTGCTGCCAAATATACACGCAGTAGTAGTAGTAGCCGGTGCAAAAAAAAA GTGTGGGGGGGATGAGGTCTCTAATAAACGTTTTTTCCACTCTAACGCCTCTCTCATTCCACATT TACAAAAAAGCCAATAGATAGTTTCGAAAAAGAGTGGGAGGACATTCATTTTGAAATGACAAAGA ACAACAATCGGTTAGTTATAATATGAACAAAAGAGACTGAAAAAGGGCGACGGCAGTTGGTGGCG TGGTTGAGAATGAGACAAGTGGAAAATAGAGCTAAAATAGAGAGAAGTGTATGCAACAAATATGA CAAATGACGACGACACCCCCCATCTCTTCTCAACCCCTCATGTCCATTTTTGCCATCGTCGCCGC CGTCGCCGCCGCCGCCGCCATTCCGAAACAAACCAACGCCGGTTCACCCTAAAGTCGTGATGCAT TATGCCAAGACAAGGCTTACATAAAAGTGGAGAGATTGAGAGATA Found at i:16409374 original size:9 final size:9 Alignment explanation
Indices: 16409362--16409389 Score: 49 Period size: 9 Copynumber: 3.1 Consensus size: 9 16409352 TTTTTGCCAT 16409362 CGTCGCCGC 1 CGTCGCCGC 16409371 CGTCGCCGC 1 CGTCGCCGC * 16409380 CGCCGCCGC 1 CGTCGCCGC 16409389 C 1 C 16409390 ATTCCGAAAC Statistics Matches: 18, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 9 18 1.00 ACGTcount: A:0.00, C:0.61, G:0.32, T:0.07 Consensus pattern (9 bp): CGTCGCCGC Left flanking sequence: Indices 16408862 -- 16409361 CGGATCCTGAAAAAAAAACAAAATCGTGTACTACATACTTCAAGGGGGCTCATTTCAAAAATGTC AGTCAACTTAACCTAGGAATGAAAAGTGAGAAAAGAGAAAAAAACGAAAGAACGCAACCAGCCAC AAGTTTGCTGCCAAATATACACGCAGTAGTAGTAGTAGCCGGTGCAAAAAAAAAGTGTGGGGGGG ATGAGGTCTCTAATAAACGTTTTTTCCACTCTAACGCCTCTCTCATTCCACATTTACAAAAAAGC CAATAGATAGTTTCGAAAAAGAGTGGGAGGACATTCATTTTGAAATGACAAAGAACAACAATCGG TTAGTTATAATATGAACAAAAGAGACTGAAAAAGGGCGACGGCAGTTGGTGGCGTGGTTGAGAAT GAGACAAGTGGAAAATAGAGCTAAAATAGAGAGAAGTGTATGCAACAAATATGACAAATGACGAC GACACCCCCCATCTCTTCTCAACCCCTCATGTCCATTTTTGCCAT Right flanking sequence: Indices 16409390 -- 16409889 ATTCCGAAACAAACCAACGCCGGTTCACCCTAAAGTCGTGATGCATTATGCCAAGACAAGGCTTA CATAAAAGTGGAGAGATTGAGAGATATAGATGGTTAGACAAAAGACAAAGTTGTAGTGTTTTTGT GGAAAATTGTGCTCTAGAAATCAAAAGTCGTATTAAAAATCGGTTCTTTTACAATTTGATCTTTA GAAATCGCGCCAAATAGATTTTTAACAAAATGACGTCATGCTTTTTTTCAAGTGGCTTTTTACAA TAAGATTAATGTCACTGTTTTGTAAAATAGTAAATTAACAATGAATTGTTTTGAATAAACCATTC CGATAAAACCCTTCTCACACATGTTTTATATAAATTTAACCTAACCATAGAAAAATAAAACTAAC CACAAAAAAACAAAACATGCACAGATTTCAAATGACTTGAACAAATTCAATATACGAAAAAAAAC TCAGATTTGTCAATTTGAACTAGTAAATTGGGAAATGTTTTATTA Found at i:16409504 original size:6 final size:7 Alignment explanation
Indices: 16409490--16409503 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 16409480 ATAGATGGTT 16409490 AGACAAA 1 AGACAAA 16409497 AGACAAA 1 AGACAAA 16409504 GTTGTAGTGT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.71, C:0.14, G:0.14, T:0.00 Consensus pattern (7 bp): AGACAAA Left flanking sequence: Indices 16408990 -- 16409489 ACAAGTTTGCTGCCAAATATACACGCAGTAGTAGTAGTAGCCGGTGCAAAAAAAAAGTGTGGGGG GGATGAGGTCTCTAATAAACGTTTTTTCCACTCTAACGCCTCTCTCATTCCACATTTACAAAAAA GCCAATAGATAGTTTCGAAAAAGAGTGGGAGGACATTCATTTTGAAATGACAAAGAACAACAATC GGTTAGTTATAATATGAACAAAAGAGACTGAAAAAGGGCGACGGCAGTTGGTGGCGTGGTTGAGA ATGAGACAAGTGGAAAATAGAGCTAAAATAGAGAGAAGTGTATGCAACAAATATGACAAATGACG ACGACACCCCCCATCTCTTCTCAACCCCTCATGTCCATTTTTGCCATCGTCGCCGCCGTCGCCGC CGCCGCCGCCATTCCGAAACAAACCAACGCCGGTTCACCCTAAAGTCGTGATGCATTATGCCAAG ACAAGGCTTACATAAAAGTGGAGAGATTGAGAGATATAGATGGTT Right flanking sequence: Indices 16409504 -- 16410003 GTTGTAGTGTTTTTGTGGAAAATTGTGCTCTAGAAATCAAAAGTCGTATTAAAAATCGGTTCTTT TACAATTTGATCTTTAGAAATCGCGCCAAATAGATTTTTAACAAAATGACGTCATGCTTTTTTTC AAGTGGCTTTTTACAATAAGATTAATGTCACTGTTTTGTAAAATAGTAAATTAACAATGAATTGT TTTGAATAAACCATTCCGATAAAACCCTTCTCACACATGTTTTATATAAATTTAACCTAACCATA GAAAAATAAAACTAACCACAAAAAAACAAAACATGCACAGATTTCAAATGACTTGAACAAATTCA ATATACGAAAAAAAACTCAGATTTGTCAATTTGAACTAGTAAATTGGGAAATGTTTTATTAAAAA ATTAAAAATAAGTTTGGACTCTAAGCATTATCTCGTGTTGGCTGGAAAAATGTGCTCTAAAGTGC ATAATTTGTATTTAAAAAAGTTAATTTCCAAACTGTGCTGAATGA Found at i:16409897 original size:8 final size:8 Alignment explanation
Indices: 16409886--16409901 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 16409876 GAAATGTTTT 16409886 ATTAAAAA 1 ATTAAAAA 16409894 ATTAAAAA 1 ATTAAAAA 16409902 TAAGTTTGGA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25 Consensus pattern (8 bp): ATTAAAAA Left flanking sequence: Indices 16409386 -- 16409885 CGCCATTCCGAAACAAACCAACGCCGGTTCACCCTAAAGTCGTGATGCATTATGCCAAGACAAGG CTTACATAAAAGTGGAGAGATTGAGAGATATAGATGGTTAGACAAAAGACAAAGTTGTAGTGTTT TTGTGGAAAATTGTGCTCTAGAAATCAAAAGTCGTATTAAAAATCGGTTCTTTTACAATTTGATC TTTAGAAATCGCGCCAAATAGATTTTTAACAAAATGACGTCATGCTTTTTTTCAAGTGGCTTTTT ACAATAAGATTAATGTCACTGTTTTGTAAAATAGTAAATTAACAATGAATTGTTTTGAATAAACC ATTCCGATAAAACCCTTCTCACACATGTTTTATATAAATTTAACCTAACCATAGAAAAATAAAAC TAACCACAAAAAAACAAAACATGCACAGATTTCAAATGACTTGAACAAATTCAATATACGAAAAA AAACTCAGATTTGTCAATTTGAACTAGTAAATTGGGAAATGTTTT Right flanking sequence: Indices 16409902 -- 16410401 TAAGTTTGGACTCTAAGCATTATCTCGTGTTGGCTGGAAAAATGTGCTCTAAAGTGCATAATTTG TATTTAAAAAAGTTAATTTCCAAACTGTGCTGAATGAACAATGTGCCCGTTCACAATTTGATCCC TAGAAATTGCGCCAAATAGATTAAAAATGACGTCATGTGTTTTTTCAAGTGGCTTCTCACAATAA AATTAATGTGGCGTTCTTTGGTAAAATAATGATTTAACAATAATGCAGTTTAGATTGTTTTGATT AAAGTCATATACTATTCCAACACAAGACACAAGTTTTAATATTATTATTCAACTTATTCTTCTTA TTAGACTTGCACCATCTCTTGATCTACGTCGACAGAACGTATATCGGTTCTTTTTGGTTTTGTTT AAAAAATGTGATTTGACAAAACACGTACGTACTACTTTTCTAAATTTTTACAGTGGAACATTTGT AGGCTAAACTTAAGACGAATTAAATATAAGCTGCCAAAATAAAGC Found at i:16410161 original size:9 final size:9 Alignment explanation
Indices: 16410144--16410161 Score: 29 Period size: 9 Copynumber: 2.0 Consensus size: 9 16410134 CAATAATGCA 16410144 GTTTAGATT 1 GTTTAGATT * 16410153 GTTTTGATT 1 GTTTAGATT 16410162 AAAGTCATAT Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 8 1.00 ACGTcount: A:0.17, C:0.00, G:0.22, T:0.61 Consensus pattern (9 bp): GTTTAGATT Left flanking sequence: Indices 16409644 -- 16410143 TTACAATAAGATTAATGTCACTGTTTTGTAAAATAGTAAATTAACAATGAATTGTTTTGAATAAA CCATTCCGATAAAACCCTTCTCACACATGTTTTATATAAATTTAACCTAACCATAGAAAAATAAA ACTAACCACAAAAAAACAAAACATGCACAGATTTCAAATGACTTGAACAAATTCAATATACGAAA AAAAACTCAGATTTGTCAATTTGAACTAGTAAATTGGGAAATGTTTTATTAAAAAATTAAAAATA AGTTTGGACTCTAAGCATTATCTCGTGTTGGCTGGAAAAATGTGCTCTAAAGTGCATAATTTGTA TTTAAAAAAGTTAATTTCCAAACTGTGCTGAATGAACAATGTGCCCGTTCACAATTTGATCCCTA GAAATTGCGCCAAATAGATTAAAAATGACGTCATGTGTTTTTTCAAGTGGCTTCTCACAATAAAA TTAATGTGGCGTTCTTTGGTAAAATAATGATTTAACAATAATGCA Right flanking sequence: Indices 16410162 -- 16410661 AAAGTCATATACTATTCCAACACAAGACACAAGTTTTAATATTATTATTCAACTTATTCTTCTTA TTAGACTTGCACCATCTCTTGATCTACGTCGACAGAACGTATATCGGTTCTTTTTGGTTTTGTTT AAAAAATGTGATTTGACAAAACACGTACGTACTACTTTTCTAAATTTTTACAGTGGAACATTTGT AGGCTAAACTTAAGACGAATTAAATATAAGCTGCCAAAATAAAGCAATACGATAAGTTCGAAAAA AAATACCTGTGAGGTTTGTGGGTTTACGCTAATAAAAAAAACAATTTCTAGTGTTCAGAAAAAAA GAGCACTGTAAATATTGAACAAGTCTAGAGTTGCAACAAGCAAAAAAAATGGGAGAGCACAGCAA ATTGCTCGTCTCAATTTTTGTCACCCAGCGCCGTTCTCCACACACACACACAGGTGTTGTGTTTG TTAATCGCCGTTCCCCTCCCGTCTCCTTCTCTCCTGTAAACGGCT Found at i:16410193 original size:7 final size:7 Alignment explanation
Indices: 16410181--16410194 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 16410171 TACTATTCCA 16410181 ACACAAG 1 ACACAAG 16410188 ACACAAG 1 ACACAAG 16410195 TTTTAATATT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.29, G:0.14, T:0.00 Consensus pattern (7 bp): ACACAAG Left flanking sequence: Indices 16409681 -- 16410180 AAATTAACAATGAATTGTTTTGAATAAACCATTCCGATAAAACCCTTCTCACACATGTTTTATAT AAATTTAACCTAACCATAGAAAAATAAAACTAACCACAAAAAAACAAAACATGCACAGATTTCAA ATGACTTGAACAAATTCAATATACGAAAAAAAACTCAGATTTGTCAATTTGAACTAGTAAATTGG GAAATGTTTTATTAAAAAATTAAAAATAAGTTTGGACTCTAAGCATTATCTCGTGTTGGCTGGAA AAATGTGCTCTAAAGTGCATAATTTGTATTTAAAAAAGTTAATTTCCAAACTGTGCTGAATGAAC AATGTGCCCGTTCACAATTTGATCCCTAGAAATTGCGCCAAATAGATTAAAAATGACGTCATGTG TTTTTTCAAGTGGCTTCTCACAATAAAATTAATGTGGCGTTCTTTGGTAAAATAATGATTTAACA ATAATGCAGTTTAGATTGTTTTGATTAAAGTCATATACTATTCCA Right flanking sequence: Indices 16410195 -- 16410694 TTTTAATATTATTATTCAACTTATTCTTCTTATTAGACTTGCACCATCTCTTGATCTACGTCGAC AGAACGTATATCGGTTCTTTTTGGTTTTGTTTAAAAAATGTGATTTGACAAAACACGTACGTACT ACTTTTCTAAATTTTTACAGTGGAACATTTGTAGGCTAAACTTAAGACGAATTAAATATAAGCTG CCAAAATAAAGCAATACGATAAGTTCGAAAAAAAATACCTGTGAGGTTTGTGGGTTTACGCTAAT AAAAAAAACAATTTCTAGTGTTCAGAAAAAAAGAGCACTGTAAATATTGAACAAGTCTAGAGTTG CAACAAGCAAAAAAAATGGGAGAGCACAGCAAATTGCTCGTCTCAATTTTTGTCACCCAGCGCCG TTCTCCACACACACACACAGGTGTTGTGTTTGTTAATCGCCGTTCCCCTCCCGTCTCCTTCTCTC CTGTAAACGGCTCTCGGAGAATAATCAGTTCTCTTTGTTAATGCA Found at i:16410220 original size:9 final size:9 Alignment explanation
Indices: 16410206--16410228 Score: 32 Period size: 9 Copynumber: 2.6 Consensus size: 9 16410196 TTTAATATTA 16410206 TTATTCAAC 1 TTATTCAAC ** 16410215 TTATTCTTC 1 TTATTCAAC 16410224 TTATT 1 TTATT 16410229 AGACTTGCAC Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.22, C:0.17, G:0.00, T:0.61 Consensus pattern (9 bp): TTATTCAAC Left flanking sequence: Indices 16409706 -- 16410205 AAACCATTCCGATAAAACCCTTCTCACACATGTTTTATATAAATTTAACCTAACCATAGAAAAAT AAAACTAACCACAAAAAAACAAAACATGCACAGATTTCAAATGACTTGAACAAATTCAATATACG AAAAAAAACTCAGATTTGTCAATTTGAACTAGTAAATTGGGAAATGTTTTATTAAAAAATTAAAA ATAAGTTTGGACTCTAAGCATTATCTCGTGTTGGCTGGAAAAATGTGCTCTAAAGTGCATAATTT GTATTTAAAAAAGTTAATTTCCAAACTGTGCTGAATGAACAATGTGCCCGTTCACAATTTGATCC CTAGAAATTGCGCCAAATAGATTAAAAATGACGTCATGTGTTTTTTCAAGTGGCTTCTCACAATA AAATTAATGTGGCGTTCTTTGGTAAAATAATGATTTAACAATAATGCAGTTTAGATTGTTTTGAT TAAAGTCATATACTATTCCAACACAAGACACAAGTTTTAATATTA Right flanking sequence: Indices 16410229 -- 16410728 AGACTTGCACCATCTCTTGATCTACGTCGACAGAACGTATATCGGTTCTTTTTGGTTTTGTTTAA AAAATGTGATTTGACAAAACACGTACGTACTACTTTTCTAAATTTTTACAGTGGAACATTTGTAG GCTAAACTTAAGACGAATTAAATATAAGCTGCCAAAATAAAGCAATACGATAAGTTCGAAAAAAA ATACCTGTGAGGTTTGTGGGTTTACGCTAATAAAAAAAACAATTTCTAGTGTTCAGAAAAAAAGA GCACTGTAAATATTGAACAAGTCTAGAGTTGCAACAAGCAAAAAAAATGGGAGAGCACAGCAAAT TGCTCGTCTCAATTTTTGTCACCCAGCGCCGTTCTCCACACACACACACAGGTGTTGTGTTTGTT AATCGCCGTTCCCCTCCCGTCTCCTTCTCTCCTGTAAACGGCTCTCGGAGAATAATCAGTTCTCT TTGTTAATGCAAAAGCACAGACACACACACATGCGCTCAAAAAAT Found at i:16411827 original size:7 final size:7 Alignment explanation
Indices: 16411812--16411828 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 16411802 TCTGCACTAG * 16411812 AATATCA 1 AATACCA 16411819 AATACCA 1 AATACCA 16411826 AAT 1 AAT 16411829 TTAGCCATCT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.59, C:0.18, G:0.00, T:0.24 Consensus pattern (7 bp): AATACCA Left flanking sequence: Indices 16411312 -- 16411811 CAATCTGGTTCTAGGATTTTGATCTCTACTGGAGTGGAAGAGAGTGGTGAAGTGGTCTACTGTTG GATCGACAGTTTTTTTTCTTTTAGGAAAATAATCGGCTTGGTTTTGGTCAAATTTAAATTTGAAA AGAACTCAAGTTGAAAATTTATTGCTGTGTAGAAAAACCAAAAAATGCTAAGGAAAGCAAAAATA ACAAAAAAAAAGTATCTCAGGTCAATCTGATTTATATAGTGAAATCAAATCAAATCAGTGTCAGT CAATTCTAATTTGCAGGGAAAAATATCTCAATATCGAGAAAATAGGATATACTTGCGAGGTTTTG AGAAAAAAAAACGGAAAATTTTTAATTAAATAAGATTGCAGTTCTATCTACGAGTTTCAACTAAA AAGGCTCATTATTTAAAAAAAAATTTTGAAACTAAATTGGCAAAATAAAACAATAAATTTCTGAT TGAATTTTTTCTAAACAAAATTTGTCGTGGTGATTTCTGCACTAG Right flanking sequence: Indices 16411829 -- 16412328 TTAGCCATCTATAATTAAAAAGTCGGAATTGTCAAAATTCAAAAAGTTAATTTCTCTAGATGTTT TCTTATAAAGAAAATTTTTTTTTCCATAAAATTTTTGAAAATCCATAGACAGGATATCAGCGCAT AAGGAACATTACTGCAGTTTCGCCAAAAAGTAGAACTCGAAAAAAAAACACTTAAAATAAATACA CCGCAGGTATGAGTAACCTATGCAGTGAAAAAGACTAATTTCGCAACTATTTGGTCTCACGTCCT GCTCAGGTAGGACAGTCAAAAATCAATAAGTGTCAACAAGCAGCGGCGAGAAAAGAAGACAAACT GTGATTCGATGTATACATACTTTTTCCCAACGTTTACCGCTCTGCGTCTTCAGTATTTTGTCAAA ATTTTAAAGATACCTGACTTGGGAAAAAAAGGCGACCTACAATTTCTAATAAAAGTAAAAAGCCG CCCACCTCGTCGGTCGAGGCCCAATTAAAGATTTCGGTGACCCAG Found at i:16413654 original size:7 final size:7 Alignment explanation
Indices: 16413642--16413656 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 16413632 CTAACGGAAT 16413642 ATTTCAA 1 ATTTCAA 16413649 ATTTCAA 1 ATTTCAA 16413656 A 1 A 16413657 AGGTGGGCGA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40 Consensus pattern (7 bp): ATTTCAA Left flanking sequence: Indices 16413142 -- 16413641 AGTGGCTGCCATCGGCGGTGACAATTGGGACGGCGAGTTGCGTGGCGACGACGTTGAATTCGAGT TTGAACGCGAATGCCTGAAAAAAAAACATATTTCAATGATCGAACATATAGAAATTGGAAAACGC GAATGGAAAGAGTCATCAGCGTCATGAAAATGCCATTTTTTATTGTACAAAGTAATGCTGGCCAA GGAGAGCACTGATGAGTAAAAATGTCAATAGTCAAACCGGAAGTCTATCCAATCACTTTTTGGGT AGCACAGAAGAGAGAAAAGTCTTAAACTGAAAAAAAAAAACGCAAAGAAAAAAGCTACGGGGAGA AATCAAGTAGCCGCTGACACCACGCAAGGCGTCATCTTTAATTTTAATTAACAAAACCTCCTTCC ACCCCATCATTGTCAACATTGCAATGGTCGAAAAACACAATACAAAATGAAATAAAAATGCAAAG AGCTGTTCCTATAAAGTTCCACGAAGAACGGAATACTAACGGAAT Right flanking sequence: Indices 16413657 -- 16414156 AGGTGGGCGAGCCATCTCTTGTTGTGTCATTCTTCCAGCTTTGAATGCTTTCCTTATCAGTTTTA ATACTAGCCACCGCCTCTGCATAGTGCGAGATAACAAAACAGTTCTCTTGTAAGGGACACGTGGA TGGGGAATACTTTTAATATTAATTGAGATTTGAGAAAAAACATAAAGTTTGACTGAAAATGATGC ACTGAAAATTATTCAGAATACACTCAAAACTTTCTACATTGTTTAAAACAAAAATAATCATAACT GTCGGAAAAAATGATAATTGTTATTTTTTCAGAAAAAAAACTGTTCTAGTTTATAATTTTGAATT CAACATTGTAGATCTACACAAATTTCTAAATTTCATATTCAGTTCAATTTTAAATCAACCAAAAT TGAAAAATACAAAAAAAAACATTTATGTGAATTTTTTGGAGACTACACCTACTGTGCTAAAATGG CCAAATATCACAGTAAAACTTTTTTAATGTTTTTTTTTTCAAATT Found at i:16418215 original size:8 final size:8 Alignment explanation
Indices: 16418202--16418217 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 16418192 TTTCAAGGAT 16418202 AAAATATG 1 AAAATATG 16418210 AAAATATG 1 AAAATATG 16418218 GTTTTCTCCA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.00, G:0.12, T:0.25 Consensus pattern (8 bp): AAAATATG Left flanking sequence: Indices 16417702 -- 16418201 ATTTCACATTTCCGCCGACGGACACTAACTGACTGAGAACCCGAGTAATTCGAGGCCCTGCATCT TATCGGTTTTGTTTTTATTTGTATACCAAATGACTAACTGAAAAGTGGCACAACGAGCTGGCCTG TTTGATGAGGAGATTTTGATATTAGTAGGTCGCAGAGGCGAACAAAAAAAAAGCAAAAACTTTCG CCTGCAAATATTTGTGGTGGTGGTGTTGATACCCTGACACCGAAATATGAATCAGAATCGAATGG GACGGAAGAATAGAGAAGAGTGGAATGGCGAACAAAATAGCAGAATGAATAGTTACTGGAGGTAT GATATTACTGTACGTTCAACTAGATAAATCATATATATATATATAATGATAAAATTTCAGAATGT TTCAGAGTAAAATGTGCGACTTAAATGTAAAAATTTTCAGTAGTTTTTAAATTTTCCGGAAGAAT CAAAAGTATCGGAGTAAGCTCGAAAATTTAAGGGGTTTCAAGGAT Right flanking sequence: Indices 16418218 -- 16418717 GTTTTCTCCAAATTTTGTATCCACTACTGATAAAACACTACCGTACCAACTACCGTAACCTAAAA AAGAACCGCACAGTCAATTCATAAATAATATGTCAAAAGTTTGTCGGAAAACAGAAAACAGAAAA TAAAAACAAAACCTTTAAAAAGTAAAAATTGAAATGAAAACAAACAGAGAGAGTGACTAATGAGG GAAACGGAATCAAAAAATGGTGGTCCGTTGCGACGAGAGAGTGAGAGACGGAAAAGAAGAGAGGG GAGAGAACGCGCGGGGGGCGCCTCCAACACAAGATCAAAAGAGGGGGGAGGTGTGCAATCGAACA GTATGCAAGTCTAGAATTGGTAAATGTGAGAGTAAAAAAGAGACTTTGAAATATAAGTAAGTGTA TCAAGTATTTATTTTTGTAGAATAATATGAAAATTGAAATTTAACAATTGAAATTGAAATGAAGT CCGCGGAGATTTTCGTTATGATTTATTAGCCATCAAAACATGAAA Found at i:16418358 original size:6 final size:7 Alignment explanation
Indices: 16418329--16418355 Score: 40 Period size: 7 Copynumber: 4.0 Consensus size: 7 16418319 AAGTTTGTCG 16418329 GAAAACA 1 GAAAACA 16418336 GAAAACA 1 GAAAACA * 16418343 GAAAATA 1 GAAAACA 16418350 -AAAACA 1 GAAAACA 16418356 AAACCTTTAA Statistics Matches: 18, Mismatches: 2, Indels: 1 0.86 0.10 0.05 Matches are distributed among these distances: 6 5 0.28 7 13 0.72 ACGTcount: A:0.74, C:0.11, G:0.11, T:0.04 Consensus pattern (7 bp): GAAAACA Left flanking sequence: Indices 16417829 -- 16418328 CTGTTTGATGAGGAGATTTTGATATTAGTAGGTCGCAGAGGCGAACAAAAAAAAAGCAAAAACTT TCGCCTGCAAATATTTGTGGTGGTGGTGTTGATACCCTGACACCGAAATATGAATCAGAATCGAA TGGGACGGAAGAATAGAGAAGAGTGGAATGGCGAACAAAATAGCAGAATGAATAGTTACTGGAGG TATGATATTACTGTACGTTCAACTAGATAAATCATATATATATATATAATGATAAAATTTCAGAA TGTTTCAGAGTAAAATGTGCGACTTAAATGTAAAAATTTTCAGTAGTTTTTAAATTTTCCGGAAG AATCAAAAGTATCGGAGTAAGCTCGAAAATTTAAGGGGTTTCAAGGATAAAATATGAAAATATGG TTTTCTCCAAATTTTGTATCCACTACTGATAAAACACTACCGTACCAACTACCGTAACCTAAAAA AGAACCGCACAGTCAATTCATAAATAATATGTCAAAAGTTTGTCG Right flanking sequence: Indices 16418356 -- 16418855 AAACCTTTAAAAAGTAAAAATTGAAATGAAAACAAACAGAGAGAGTGACTAATGAGGGAAACGGA ATCAAAAAATGGTGGTCCGTTGCGACGAGAGAGTGAGAGACGGAAAAGAAGAGAGGGGAGAGAAC GCGCGGGGGGCGCCTCCAACACAAGATCAAAAGAGGGGGGAGGTGTGCAATCGAACAGTATGCAA GTCTAGAATTGGTAAATGTGAGAGTAAAAAAGAGACTTTGAAATATAAGTAAGTGTATCAAGTAT TTATTTTTGTAGAATAATATGAAAATTGAAATTTAACAATTGAAATTGAAATGAAGTCCGCGGAG ATTTTCGTTATGATTTATTAGCCATCAAAACATGAAAAGAGGAATAACATGGAAAGTTCACATTT CAAAAAGGATCTATATTTTTTGCGGGTTTTGGGGGAAAAATTCCAGAATTTCTAAACATATTAAA TCTCAAAAAAATAATTTTTTAAAAAATGTTAAAAGAAACTTAATT Found at i:16419201 original size:7 final size:7 Alignment explanation
Indices: 16419189--16419206 Score: 29 Period size: 7 Copynumber: 2.6 Consensus size: 7 16419179 GTTAATGGAA 16419189 ATTTAAG 1 ATTTAAG * 16419196 ATTTAAT 1 ATTTAAG 16419203 ATTT 1 ATTT 16419207 TTTTAAATAA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.39, C:0.00, G:0.06, T:0.56 Consensus pattern (7 bp): ATTTAAG Left flanking sequence: Indices 16418689 -- 16419188 TATGATTTATTAGCCATCAAAACATGAAAAGAGGAATAACATGGAAAGTTCACATTTCAAAAAGG ATCTATATTTTTTGCGGGTTTTGGGGGAAAAATTCCAGAATTTCTAAACATATTAAATCTCAAAA AAATAATTTTTTAAAAAATGTTAAAAGAAACTTAATTTATATGTGGGTCTTTTTGAGGTGTTTAT CATTTTTCTTAGTACTAATATAATATAAAAATGAAACAGCAAGGAAATATCCATGAAAATGTTAC ATCTAGCGTTTAAAAACTTTTTAAAAAAGAAAATTTTGTGGTCTTCTTCAAGCCTAAAACTGGCC TATTTCTGTTTTGAAGCATAAAACAAACTATTGATAAAAAAAAAACAACAAATCAAGTGTGTTGT CAAAAATATCTTGATTAGTTGTTTTTTTTTGAAATCAAAAGATCAACGAAATTGTTTTGAAATTT AAGAAACAAAAATTTTTTATACAAATTTTATTACGGTTAATGGAA Right flanking sequence: Indices 16419207 -- 16419706 TTTTAAATAAAGTTAAAAACCTCAAAGTCTGTTCTTCAAAAGTTCCTGAACGACGAAAAAATTAT TTTTCTTGATGTATAGCGAATCTCCGATAGCGTGGAATTGTTAATTACGAATTTTCTTTGCGCTT GTGATTTTTGATTTCAGATTTTAGAATTCAATGATATATAAAAATTCTGCCCAACTTTAATAATA TTATTTAAAAAAAAGCAAAACATTATGAAGGTTTTGTCAAATGCGGACATTTTCAATTCAACAAC TTCTACTTCTACATACTTTCCAATATAATACACTATTGAAAAAAAGAGCTTTCCAATAAAAAGCT ACAGACACTGATCAAAATTCGGTCTCATGCTGAAGAGTGTTATAAAATTCTGTGTCTGTGAGGAG CATCTGCTCAGACTTTTGTTGAACGTTCGCTGGATGTTCGAATTGGGAAAAGGTCAACTAGAATA ATGGTCAGAGCAGCTGTGATAGAGAAAATATTTTTAAACTTTTTT Found at i:16419976 original size:8 final size:8 Alignment explanation
Indices: 16419963--16419987 Score: 36 Period size: 8 Copynumber: 3.1 Consensus size: 8 16419953 AAACAAAAAG 16419963 AATTAAGA 1 AATTAAGA * 16419971 AATTAAGC 1 AATTAAGA * 16419979 AATCAAGA 1 AATTAAGA 16419987 A 1 A 16419988 TCAATTAAGA Statistics Matches: 14, Mismatches: 3, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 8 14 1.00 ACGTcount: A:0.60, C:0.08, G:0.12, T:0.20 Consensus pattern (8 bp): AATTAAGA Left flanking sequence: Indices 16419463 -- 16419962 CAACTTCTACTTCTACATACTTTCCAATATAATACACTATTGAAAAAAAGAGCTTTCCAATAAAA AGCTACAGACACTGATCAAAATTCGGTCTCATGCTGAAGAGTGTTATAAAATTCTGTGTCTGTGA GGAGCATCTGCTCAGACTTTTGTTGAACGTTCGCTGGATGTTCGAATTGGGAAAAGGTCAACTAG AATAATGGTCAGAGCAGCTGTGATAGAGAAAATATTTTTAAACTTTTTTACAAAAATGGTACGAT GTAATAAATGTTTTGAAATTAATCAAAACACATTTTTATCCAAAGTGCACAAAAGTCAAACGAAA TTGTGCATAAAGGAATAATGAACCAATAACTAATTTTCACAAGCTACAATTAAAATTAAGAGTTA TAAGAAATTTTCAGCTGTACTTTTATTCTTTAGCCTAACTTTCATTAAATGTTTTAAATTGACCA ACAGTTTTCAATTTCTCCAACTTCTATCGAACTTCAAACAAAAAG Right flanking sequence: Indices 16419988 -- 16420487 TCAATTAAGAGAAGTTTGCAAAAAGTGTGGAATAATAGACGTTTTGTTTGCATTTTGCTAGCAGC CGGCCTGTTTGGCGACAGCGATGCCACCAGGCAGCCACGAGCTTATTTATACAAAAAAGATCCTT CATTGCTCCTCCAAATACATTTTATGATAGTTATAATATACAAATCCGCTGACCACCCATACACA CATTGACTGCCGGATGCATATCTATCTATCCATATATTTCTACTTCGCCATGTTATTATGTTCAG CCCCCTCTCTTTCTTGGCGATCTTCTTCCATAGCAACCAAGCTGCTCGGGAGCATTTTGATAACA AGTTTTAGATTTCATAAGTAGGTAGAGTTAGGCAAAAATGCTTTAAATATGTCAAGTTTGATATA TTTTTTTTGCCATTGAGCGAGTTCCAATAATAGTTTTTAAAAAAAGTTATACAACATTTTAATAA TTTTCGTATTAAAAATCAACTGAGCGAAAAAATATGTATTGGCCC Found at i:16419989 original size:7 final size:8 Alignment explanation
Indices: 16419963--16419991 Score: 30 Period size: 8 Copynumber: 3.8 Consensus size: 8 16419953 AAACAAAAAG * 16419963 AATTAAGA 1 AATCAAGA * * 16419971 AATTAAGC 1 AATCAAGA 16419979 AATCAAG- 1 AATCAAGA 16419986 AATCAA 1 AATCAA 16419992 TTAAGAGAAG Statistics Matches: 19, Mismatches: 2, Indels: 1 0.86 0.09 0.05 Matches are distributed among these distances: 7 6 0.32 8 13 0.68 ACGTcount: A:0.59, C:0.10, G:0.10, T:0.21 Consensus pattern (8 bp): AATCAAGA Left flanking sequence: Indices 16419463 -- 16419962 CAACTTCTACTTCTACATACTTTCCAATATAATACACTATTGAAAAAAAGAGCTTTCCAATAAAA AGCTACAGACACTGATCAAAATTCGGTCTCATGCTGAAGAGTGTTATAAAATTCTGTGTCTGTGA GGAGCATCTGCTCAGACTTTTGTTGAACGTTCGCTGGATGTTCGAATTGGGAAAAGGTCAACTAG AATAATGGTCAGAGCAGCTGTGATAGAGAAAATATTTTTAAACTTTTTTACAAAAATGGTACGAT GTAATAAATGTTTTGAAATTAATCAAAACACATTTTTATCCAAAGTGCACAAAAGTCAAACGAAA TTGTGCATAAAGGAATAATGAACCAATAACTAATTTTCACAAGCTACAATTAAAATTAAGAGTTA TAAGAAATTTTCAGCTGTACTTTTATTCTTTAGCCTAACTTTCATTAAATGTTTTAAATTGACCA ACAGTTTTCAATTTCTCCAACTTCTATCGAACTTCAAACAAAAAG Right flanking sequence: Indices 16419992 -- 16420491 TTAAGAGAAGTTTGCAAAAAGTGTGGAATAATAGACGTTTTGTTTGCATTTTGCTAGCAGCCGGC CTGTTTGGCGACAGCGATGCCACCAGGCAGCCACGAGCTTATTTATACAAAAAAGATCCTTCATT GCTCCTCCAAATACATTTTATGATAGTTATAATATACAAATCCGCTGACCACCCATACACACATT GACTGCCGGATGCATATCTATCTATCCATATATTTCTACTTCGCCATGTTATTATGTTCAGCCCC CTCTCTTTCTTGGCGATCTTCTTCCATAGCAACCAAGCTGCTCGGGAGCATTTTGATAACAAGTT TTAGATTTCATAAGTAGGTAGAGTTAGGCAAAAATGCTTTAAATATGTCAAGTTTGATATATTTT TTTTGCCATTGAGCGAGTTCCAATAATAGTTTTTAAAAAAAGTTATACAACATTTTAATAATTTT CGTATTAAAAATCAACTGAGCGAAAAAATATGTATTGGCCCAACT Found at i:16420510 original size:9 final size:9 Alignment explanation
Indices: 16420492--16420511 Score: 33 Period size: 9 Copynumber: 2.2 Consensus size: 9 16420482 TGGCCCAACT * 16420492 TTTTAAAAA 1 TTTGAAAAA 16420501 TTTGAAAAA 1 TTTGAAAAA 16420510 TT 1 TT 16420512 AATTTATTTA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45 Consensus pattern (9 bp): TTTGAAAAA Left flanking sequence: Indices 16419992 -- 16420491 TTAAGAGAAGTTTGCAAAAAGTGTGGAATAATAGACGTTTTGTTTGCATTTTGCTAGCAGCCGGC CTGTTTGGCGACAGCGATGCCACCAGGCAGCCACGAGCTTATTTATACAAAAAAGATCCTTCATT GCTCCTCCAAATACATTTTATGATAGTTATAATATACAAATCCGCTGACCACCCATACACACATT GACTGCCGGATGCATATCTATCTATCCATATATTTCTACTTCGCCATGTTATTATGTTCAGCCCC CTCTCTTTCTTGGCGATCTTCTTCCATAGCAACCAAGCTGCTCGGGAGCATTTTGATAACAAGTT TTAGATTTCATAAGTAGGTAGAGTTAGGCAAAAATGCTTTAAATATGTCAAGTTTGATATATTTT TTTTGCCATTGAGCGAGTTCCAATAATAGTTTTTAAAAAAAGTTATACAACATTTTAATAATTTT CGTATTAAAAATCAACTGAGCGAAAAAATATGTATTGGCCCAACT Right flanking sequence: Indices 16420512 -- 16421011 AATTTATTTATGTCCATTTTTAATTAAATCAAAATAATAACGTTTTATATTGAAAATACTTGAAA ATATTGAAAATACTGAAAGAAAAAATGTAAGTTTTAGTACTTACTAAAATGCGCTTTTTCACGCA GGGGAGCAACGGATGAAAAGTTAGAAAAATATAAAAAATGAAATATTGTCAAGGTTAAAAAAAGA AAAAGCCGCCTAGAAAAAACAGGTGAAACAATAATTTAATACAAGTTAAAAACACACAACAACAT CAAACCAATCAAAGTAATTTCATAGTTTCAGTGAAAAGGGTGTGGTCAACTTCTTGAAGTAAAAC TCAAATTAGTCGGATTAAGAAGACTAGTAAAAAAAAGTCATTAGGATGGGTGGAAGGCCATTGAT ATATTATTCTGCGGGTCTTGTTCTTTTCTCTTGTCGATTTCGATTTGGGTGCTACCAACTAACAT TTCGAACTTTTTTTGTTGGACGAAGTATTTTGGTGAAGTAGACTT Found at i:16420585 original size:9 final size:9 Alignment explanation
Indices: 16420558--16420594 Score: 58 Period size: 9 Copynumber: 4.0 Consensus size: 9 16420548 ATAACGTTTT 16420558 ATATTGAAA 1 ATATTGAAA 16420567 ATACTTGAAA 1 ATA-TTGAAA 16420577 ATATTGAAA 1 ATATTGAAA * 16420586 ATACTGAAA 1 ATATTGAAA 16420595 GAAAAAATGT Statistics Matches: 26, Mismatches: 1, Indels: 2 0.90 0.03 0.07 Matches are distributed among these distances: 9 17 0.65 10 9 0.35 ACGTcount: A:0.54, C:0.05, G:0.11, T:0.30 Consensus pattern (9 bp): ATATTGAAA Left flanking sequence: Indices 16420058 -- 16420557 TGTTTGGCGACAGCGATGCCACCAGGCAGCCACGAGCTTATTTATACAAAAAAGATCCTTCATTG CTCCTCCAAATACATTTTATGATAGTTATAATATACAAATCCGCTGACCACCCATACACACATTG ACTGCCGGATGCATATCTATCTATCCATATATTTCTACTTCGCCATGTTATTATGTTCAGCCCCC TCTCTTTCTTGGCGATCTTCTTCCATAGCAACCAAGCTGCTCGGGAGCATTTTGATAACAAGTTT TAGATTTCATAAGTAGGTAGAGTTAGGCAAAAATGCTTTAAATATGTCAAGTTTGATATATTTTT TTTGCCATTGAGCGAGTTCCAATAATAGTTTTTAAAAAAAGTTATACAACATTTTAATAATTTTC GTATTAAAAATCAACTGAGCGAAAAAATATGTATTGGCCCAACTTTTTAAAAATTTGAAAAATTA ATTTATTTATGTCCATTTTTAATTAAATCAAAATAATAACGTTTT Right flanking sequence: Indices 16420595 -- 16421094 GAAAAAATGTAAGTTTTAGTACTTACTAAAATGCGCTTTTTCACGCAGGGGAGCAACGGATGAAA AGTTAGAAAAATATAAAAAATGAAATATTGTCAAGGTTAAAAAAAGAAAAAGCCGCCTAGAAAAA ACAGGTGAAACAATAATTTAATACAAGTTAAAAACACACAACAACATCAAACCAATCAAAGTAAT TTCATAGTTTCAGTGAAAAGGGTGTGGTCAACTTCTTGAAGTAAAACTCAAATTAGTCGGATTAA GAAGACTAGTAAAAAAAAGTCATTAGGATGGGTGGAAGGCCATTGATATATTATTCTGCGGGTCT TGTTCTTTTCTCTTGTCGATTTCGATTTGGGTGCTACCAACTAACATTTCGAACTTTTTTTGTTG GACGAAGTATTTTGGTGAAGTAGACTTATGTTAAGGTTATTTTTCAATGACTTAAAAAAACATGG ACTAAAAAATTCAATGCGTAATATATCAAGGCAAAATATTAAAAA Found at i:16421099 original size:8 final size:9 Alignment explanation
Indices: 16421082--16421102 Score: 35 Period size: 8 Copynumber: 2.4 Consensus size: 9 16421072 ATATCAAGGC 16421082 AAAATATTA 1 AAAATATTA 16421091 AAAAT-TTA 1 AAAATATTA 16421099 AAAA 1 AAAA 16421103 GAGTAATACA Statistics Matches: 12, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 8 7 0.58 9 5 0.42 ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29 Consensus pattern (9 bp): AAAATATTA Left flanking sequence: Indices 16420582 -- 16421081 GAAAATACTGAAAGAAAAAATGTAAGTTTTAGTACTTACTAAAATGCGCTTTTTCACGCAGGGGA GCAACGGATGAAAAGTTAGAAAAATATAAAAAATGAAATATTGTCAAGGTTAAAAAAAGAAAAAG CCGCCTAGAAAAAACAGGTGAAACAATAATTTAATACAAGTTAAAAACACACAACAACATCAAAC CAATCAAAGTAATTTCATAGTTTCAGTGAAAAGGGTGTGGTCAACTTCTTGAAGTAAAACTCAAA TTAGTCGGATTAAGAAGACTAGTAAAAAAAAGTCATTAGGATGGGTGGAAGGCCATTGATATATT ATTCTGCGGGTCTTGTTCTTTTCTCTTGTCGATTTCGATTTGGGTGCTACCAACTAACATTTCGA ACTTTTTTTGTTGGACGAAGTATTTTGGTGAAGTAGACTTATGTTAAGGTTATTTTTCAATGACT TAAAAAAACATGGACTAAAAAATTCAATGCGTAATATATCAAGGC Right flanking sequence: Indices 16421103 -- 16421602 GAGTAATACAGAAAAATCAATAAAAAACACCTTAGGTTTACAAATTTTTTTGGACAATGTAGCAC AAATTAACCCAAGATAGCTATAATTGAAAGATTACTTAAATAGTAAGTTTAAAATGGAAAAATCC GCTCAGAAAAATAGAACCAATTTTGTTTTTTTCTTATAATAATATCCTAATATTAAACTGGAAAC AGAAAAAAAATAATGATACGTTAAAAAAAATCATTTTTAATCTCAACTGTTATAAAAGAAGTGCT TTTTTTCAACATGTGAAAGTGCAAAACTTTTGAAAACATAGTCGATTTTGTTTATTATATCAACA ATATTTTTTCATGGAATCATTTTTCCTTCTCTCTATTCAACAAAGAAACCGAAAATTTTCATAAA AACACCTGCAAAAGCGTGTGTAAAACTTTTCTGTTTTGTATCTGACAACAACAGGCTCATTACTA ACAAAAAGGTAAGCAATCTGTGTCGGTAATTCGACCGGTTTTTGG Found at