TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_V Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 20922231 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:17526728 original size:669 final size:669 Alignment explanation
Indices: 17525451--17526763 Score: 2199 Period size: 669 Copynumber: 2.0 Consensus size: 669 17525441 AGCCCGATCT * * * * * 17525451 TTCTGATAACAAAACTCGAACAAGTCGGGAACGTTCGGAAAGCTCTGAGGAAAACTCCGACAGTA 1 TTCTGATAACAAAACTCCAACAAGTCGGAAACGTTCGGAAAACTCTGAAGAAAACTCCGACAATA * * * * * 17525516 TTATGCTTAAGTACGCAATTGAGCTATCTTTATTAGATTCGAAAGAGGACGCTTCAAAAATTGAA 66 TCATGCTTAAGTACGCAATTGAGCTATCTTTACTAGATTCAAAAAAGGACGCTACAAAAATTGAA * * 17525581 GCAATAACGAAGAAGCTTAAGTTGGAACTGGCGAAGCTTAAATTGAGAATTACGCAGTCTTTATC 131 GCAATAACGAAGAAGCTTAAGTTGGAACTGGCAAAGCTTAAATTGAGAATTACGAAGTCTTTATC * * *** 17525646 AGATTCAAAAGACGACTCTTTGTCCAATGAAGCAAATCTGCAGAACGATCTACCTTCGACTTCTG 196 AAATTCAAAAGACGACCCTTCAACCAATGAAGCAAATCTGCAGAACGATCTACCTTCGACTTCTG * * 17525711 ATAGCAAAACTCCAACAAGTCGGGAACGTTCGGAAAGCTCTGAGTCAAACATTAGCAACATCTTG 261 ATAACAAAACTCCAACAAGTCGGGAACGTTCGGAAAGCTCTGAGTCAAACATTAGCAACATCATG * * * 17525776 CGTGAATTGGAAAATGAGCAGTCTTTATTAGATTCGAAAAACGACTCTTCAAACCCTGAATACAT 326 CGTAAATTGGAAAACGAGCAGTCTTTATTAGATTCGAAAAACGACTCTTCAAACCCTGAATAAAT * 17525841 GATGAAGATGCTTAAGTTGGATCTGGCGAAGCTTAAATTGGTATTTTTTCAAGCTGTATTAGATG 391 GATGAAAATGCTTAAGTTGGATCTGGCGAAGCTTAAATTGGTATTTTTTCAAGCTGTATTAGATG * 17525906 CGAAAGGCAATTCCGCGACCGATGAAACACGTCCGGGAGACGTTCCATCCTTGAATTCCGAAGGC 456 CGAAAGGCAATTCCGCGACCGATGAAACACGTCCAGGAGACGTTCCATCCTTGAATTCCGAAGGC * * * ** * 17525971 AGAACACCAACAAGTCGGAAACGTTCGGAAAGCTCTGAGTCAAACATCGAAAACATCCTTTTGAA 521 AGAAAACCAACAAGTCGGAAACGTTCGGAAAGCTCTGAGTCAAACATCGAAAACAACATGATAAA 17526036 GTTGGCAATGAAGGAGTCTTTATTAGAATCAAAAGACGATTCTTCAACCAATGGAGCAAGTCTGC 586 GTTGGCAATGAAGGAGTCTTTATTAGAATCAAAAGACGATTCTTCAACCAATGGAGCAAGTCTGC 17526101 AGAAAGATCTACCTTCGAC 651 AGAAAGATCTACCTTCGAC * * * * 17526120 TTCTGATGACAGAACTCCAACAAGTCGGAAACTTTCGGAAAACTTTGAAGAAAACTCCGACAATA 1 TTCTGATAACAAAACTCCAACAAGTCGGAAACGTTCGGAAAACTCTGAAGAAAACTCCGACAATA * 17526185 TCATGCTTAAGTACGCAATTGAGCTATCTTTACTAGATTCAAAAAAGGACTCTACAAAAATTGAA 66 TCATGCTTAAGTACGCAATTGAGCTATCTTTACTAGATTCAAAAAAGGACGCTACAAAAATTGAA * * * * * * 17526250 GCAATACCGGAGAAGCTTAAGTTTGAACTGGCAAAGCTTAAATTGGGACTTATGAAGTCTTTATC 131 GCAATAACGAAGAAGCTTAAGTTGGAACTGGCAAAGCTTAAATTGAGAATTACGAAGTCTTTATC * * * * 17526315 AAATTCAAAAGACGATCCTTCAACCAATGGAGCAAGTCTGCAGAATGATCTACCTTCGACTTCTG 196 AAATTCAAAAGACGACCCTTCAACCAATGAAGCAAATCTGCAGAACGATCTACCTTCGACTTCTG * * 17526380 ATGACAGAACTCCAACAAGTCGGGAACGTTCGGAAAGCTCTGAGTCAAACATTAGCAACATCATG 261 ATAACAAAACTCCAACAAGTCGGGAACGTTCGGAAAGCTCTGAGTCAAACATTAGCAACATCATG * * 17526445 CGTAAATTGGAAATCGAGCAGTCTTTATTAGATTCGAAAAACGACTCTTCAAACCCTGAATCAAT 326 CGTAAATTGGAAAACGAGCAGTCTTTATTAGATTCGAAAAACGACTCTTCAAACCCTGAATAAAT * 17526510 GATGAAAATGCTTAAGTTGGATCTGGCGAAGCTTAAATTGGTATTTTTTCAAGGTGTATTAGATG 391 GATGAAAATGCTTAAGTTGGATCTGGCGAAGCTTAAATTGGTATTTTTTCAAGCTGTATTAGATG * 17526575 CGAAAGGCAATTCCGCGACCGATGAAACACGTCCAGGAGACGTTCTATCCTTGAATTCCGAAGGC 456 CGAAAGGCAATTCCGCGACCGATGAAACACGTCCAGGAGACGTTCCATCCTTGAATTCCGAAGGC * * * 17526640 AGAAATCCAACAAGTCGGAAACGTTCGGAAATCTCTGAGTCAAACATCGAAAACAAGATGATAAA 521 AGAAAACCAACAAGTCGGAAACGTTCGGAAAGCTCTGAGTCAAACATCGAAAACAACATGATAAA * ** ** * * 17526705 GTTGGCAATGAAGGAGTCTTTATTGGGTTCGGAAGACGGTTCTTCAACCGATGGAGCAA 586 GTTGGCAATGAAGGAGTCTTTATTAGAATCAAAAGACGATTCTTCAACCAATGGAGCAA 17526764 TGGCAAAGAT Statistics Matches: 583, Mismatches: 61, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 669 583 1.00 ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25 Consensus pattern (669 bp): TTCTGATAACAAAACTCCAACAAGTCGGAAACGTTCGGAAAACTCTGAAGAAAACTCCGACAATA TCATGCTTAAGTACGCAATTGAGCTATCTTTACTAGATTCAAAAAAGGACGCTACAAAAATTGAA GCAATAACGAAGAAGCTTAAGTTGGAACTGGCAAAGCTTAAATTGAGAATTACGAAGTCTTTATC AAATTCAAAAGACGACCCTTCAACCAATGAAGCAAATCTGCAGAACGATCTACCTTCGACTTCTG ATAACAAAACTCCAACAAGTCGGGAACGTTCGGAAAGCTCTGAGTCAAACATTAGCAACATCATG CGTAAATTGGAAAACGAGCAGTCTTTATTAGATTCGAAAAACGACTCTTCAAACCCTGAATAAAT GATGAAAATGCTTAAGTTGGATCTGGCGAAGCTTAAATTGGTATTTTTTCAAGCTGTATTAGATG CGAAAGGCAATTCCGCGACCGATGAAACACGTCCAGGAGACGTTCCATCCTTGAATTCCGAAGGC AGAAAACCAACAAGTCGGAAACGTTCGGAAAGCTCTGAGTCAAACATCGAAAACAACATGATAAA GTTGGCAATGAAGGAGTCTTTATTAGAATCAAAAGACGATTCTTCAACCAATGGAGCAAGTCTGC AGAAAGATCTACCTTCGAC Left flanking sequence: Indices 17524951 -- 17525450 CCCTCGACCACCGAAGACGAAACTTCTGAACTGCGAAGAAAATGGAAGACCATCCCAGAACGTGA TTTCAATATGATGCTTGAGTTGGTGATTACGAAGAGTTTAATAGATTCAAATTTAGTCCCTTCAA CCGATGGAGAAAGTCGACATTCAAAAAGCTCTGAGTCAAATATCAACAACAATATGCTTGAGTTG GAAGCTAAGCGGTCTTTACTGTTTTCGAAAGACGACTCTTCAAACGTTGGAAAAATGGCGAAGAG GGTTAAGTTCGAAATTATGCAGTCTTTGTTGGATCCTGAAAATAATTCTTCGACCGATGGAGCAG GTCTTTTGGACAATCTACCTTCCACTTCTGATAACAGGACTCCAAGAAGGCAAAGACATTTGGAA CACTCTATGGAAAGTTTCGACAATATCATGCTTGAGGCTGCAATTAAGCAATCTTTGTTAGATTT GAAAGGCGATTGTTCTGCCGATGGAACACGTCCGAAGCCCGATCT Right flanking sequence: Indices 17526764 -- 17527263 TGGCAAAGATGCTTAAGATGGCACTTGTGCAGTCTTTATTGGGTTCGGATGATTATTCTTCATCC GATGAAGCAAGCACGGAAGACGATCCACCTTCAAACTCTGATAACAAGACTCCGACAAGTGGGAA ACGTTTGGAAAGCTATGAGTCACGCATCGAAAACATCCTTTTGAAGTTGGCAATGAAGGAGTCTT TATTAGAATCAAAAGACGATTCTTCAACCAATGGAGCAAGTCTGCAGAAAGATCTACCTTCGACT TCTGATGACAGAACTCCAACAAGTCGGAAACTTTCGGAAAACTTTGAAGAAAACTCCGACAATAT CATGCTTAAGTACGCAATTGAGCTATCTTTATTAGATTCGAAAAAGGACTCTTCAAAAATTGAAG CAATAACGAAGAAGCTTACGTTGGAACTGGCGAAGCTTAAATTGGGAATCACGCAGTCTTTATCA GATTCAAAAGAAGATCCTTCAACCAATGAAGCAAGCCCGGAAGAC Found at i:17621938 original size:112 final size:112 Alignment explanation
Indices: 17621741--17622005 Score: 460 Period size: 112 Copynumber: 2.4 Consensus size: 112 17621731 ACAGTAATCC * * *** * * 17621741 TACAGTACTCCTACAGTACCCCTACAGTACTATTACAGTCCCCCGACTATATCCCACTACTAACC 1 TACAGTAATCCTACAGTACTCCTACAGTACCCCTACAGTACCCCGACCATATCCCACTACTAACC * 17621806 GCAAACCTATATCTCTTCAAAAGACAAAAACTCAACTTTTCCTAAAT 66 GCAAACCTATATCACTTCAAAAGACAAAAACTCAACTTTTCCTAAAT 17621853 TACAGTAATCCTACAGTACTCCTACAGTACCCCTACAGTACCCCGACCATATCCCACTACTAACC 1 TACAGTAATCCTACAGTACTCCTACAGTACCCCTACAGTACCCCGACCATATCCCACTACTAACC * 17621918 GCAAACCTATATCACTTCAAAAGACAAAAACTCAATTTTTCCTAAAT 66 GCAAACCTATATCACTTCAAAAGACAAAAACTCAACTTTTCCTAAAT * 17621965 TACAGTAATCCTACAGTTCTCCTACAGTACCCCTACAGTAC 1 TACAGTAATCCTACAGTACTCCTACAGTACCCCTACAGTAC 17622006 TACTACAGTA Statistics Matches: 143, Mismatches: 10, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 112 143 1.00 ACGTcount: A:0.35, C:0.33, G:0.07, T:0.25 Consensus pattern (112 bp): TACAGTAATCCTACAGTACTCCTACAGTACCCCTACAGTACCCCGACCATATCCCACTACTAACC GCAAACCTATATCACTTCAAAAGACAAAAACTCAACTTTTCCTAAAT Left flanking sequence: Indices 17621241 -- 17621740 GTAAATTCCAGAAGGTTCTAGAAAATTTCAGAACTTTCTCGAATTTTCCATAAGGTTCTAGTAAA TTCCAGAAGGTTCTAGAAAATTTCAGAACTTTCTCGAATTTTCCAGAAGGTTCTAGTAAATTCCA GAAGGTTCTAGAAAATTTCAGAACTTTCTCGAATTTTCCAGAAGGTTCTAGTAAATTCCAGAAGG TTCTAGAAAATTTCAGAACTTTCTCGAATTTTCCATAAGATTCTAGTAAATTCCAGAAGGTTCTA GAAAATTTCAGAACTTTCTCGAATTTTCCAGAAGGTTCTAGTAAATTCCAGAAGGTTCTAGAAAA TTTCAGAACTTTCTCGAATTTTCCAGAAGGTTCTAGTAAATTCCAGAAGGATCTAGAAAATTCCA GAATTTTCTCGAATTCTCCAGAAAGTTCTAGAGCTTTTCAGAATTTTCCCCAAGTTTCCAATATT CCTTCAAAAGACGAAAAGTCAATTTTTCTCAAACTACAGTAATCC Right flanking sequence: Indices 17622006 -- 17622505 TACTACAGTACCCCGACCATATCCCACTACTAACCCCAAACCTATCTCTCTTCAAGAGACAAAAA CACCTTGCCTTTGTAAGCTATGACGTCACTACTTAACAAACGGACACTATTTTTTTATATATAGG TAATAATACTCACCAATGAATTGTGGTGATTAAACTATCAGAAACGGACGCCGTATGAGATGCAA AGGAAATGAGGAATCTGTGGAAAATTGGAAAAAATTCTAGCGATGGCACTTCTTATCATCAACTG TTTAGTCAGGCACTCTCGAACTGTTGAGTGGCGAAGGCTCACTAAAAAATATACCTTTAACTAAA ACATTTATCCAAATTCATATTTTCTGTTTCCTTCTGTTTCCTGAATATATTCTTGGGAGTGCCTG GTGTTTCATTCCAGTAATGCAATGGCTCCGGAAATGTAAGTGATGTTAAGGTTTCCTCACGATTA ATTTTCAACAGTTTTTTAAAGGGAAATTCATTTTTAGTGTTTGTT Found at i:17765785 original size:328 final size:328 Alignment explanation
Indices: 17765188--17766362 Score: 2252 Period size: 328 Copynumber: 3.6 Consensus size: 328 17765178 AAGCTTGTTG 17765188 ATAGCTCTATCCGTTGCAGAGATACATCGGGTTAAAGTTTGAGCGGCGAGAGAGTATGAGGGAGG 1 ATAGCTCTATCCGTTGCAGAGATACATCGGGTTAAAGTTTGAGCGGCGAGAGAGTATGAGGGAGG * 17765253 GGGAGAGTGCAGACAAACGGACGGCCTGCGTCTCTCCTCCTCCCACACTCTTTTCCTTACTCTGG 66 GGGAGAGTGCAGACAAACGGACGGCCTGCGTCTCTCCTCCTCCCACACTCTTTTGCTTACTCTGG 17765318 TTCAAACGCGCATATCTCAGCGGGGAGTGGAGATATCAAAAAACTTTCAACTGACGAAATGTTCT 131 TTCAAACGCGCATATCTCAGCGGGGAGTGGAGATATCAAAAAACTTTCAACTGACGAAATGTTCT * 17765383 ACATGAGATTTTCTATTGACTCCGCATTCAAAACTTCACTTTTCTTTGAAAACAGATACGTTAGC 196 ACATGAGATTTTCTATTGACTCCGCATTCAAAACTTCACTTTTCTTTGAAAACAGATACGCTAGC 17765448 TGTAAAATGAGCTGGGTATCCAATTTTCTAGTGAAATTTTGAACATTGTCACAGTTGAAAATTTT 261 TGTAAAATGAGCTGGGTATCCAATTTTCTAGTGAAATTTTGAACATTGTCACAGTTGAAAATTTT 17765513 TCC 326 TCC 17765516 ATAGCTCTATCCGTTGCAGAGATACATCGGGTTAAAGTTTGAGCGGCGAGAGAGTATGAGGGAGG 1 ATAGCTCTATCCGTTGCAGAGATACATCGGGTTAAAGTTTGAGCGGCGAGAGAGTATGAGGGAGG 17765581 GGGAGAGTGCAGACAAACGGACGGCCTGCGTCTCTCCTCCTCCCACACTCTTTTGCTTACTCTGG 66 GGGAGAGTGCAGACAAACGGACGGCCTGCGTCTCTCCTCCTCCCACACTCTTTTGCTTACTCTGG 17765646 TTCAAACGCGCATATCTCAGCGGGGAGTGGAGATATCAAAAAACTTTCAACTGACGAAATGTTCT 131 TTCAAACGCGCATATCTCAGCGGGGAGTGGAGATATCAAAAAACTTTCAACTGACGAAATGTTCT 17765711 ACATGAGATTTTCTATTGACTCCGCATTCAAAACTTCACTTTTCTTTGAAAACAGATACGCTAGC 196 ACATGAGATTTTCTATTGACTCCGCATTCAAAACTTCACTTTTCTTTGAAAACAGATACGCTAGC 17765776 TGTAAAATGAGCTGGGTATCCAATTTTCTAGTGAAATTTTGAACATTGTCACAGTTGAAAATTTT 261 TGTAAAATGAGCTGGGTATCCAATTTTCTAGTGAAATTTTGAACATTGTCACAGTTGAAAATTTT 17765841 TCC 326 TCC 17765844 ATAGCTCTATCCGTTGCAGAGATACATCGGGTTAAAGTTTGAGCGGCGAGAGAGTATGAGGGAGG 1 ATAGCTCTATCCGTTGCAGAGATACATCGGGTTAAAGTTTGAGCGGCGAGAGAGTATGAGGGAGG 17765909 GGGAGAGTGCAGACAAACGGACGGCCTGCGTCTCTCCTCCTCCCACACTCTTTTGCTTACTCTGG 66 GGGAGAGTGCAGACAAACGGACGGCCTGCGTCTCTCCTCCTCCCACACTCTTTTGCTTACTCTGG 17765974 TTCAAACGCGCATATCTCAGCGGGGAGTGGAGATATCAAAAAACTTTCAACTGACGAAATGTTCT 131 TTCAAACGCGCATATCTCAGCGGGGAGTGGAGATATCAAAAAACTTTCAACTGACGAAATGTTCT 17766039 ACATGAGATTTTCTATTGACTCCGCATTCAAAACTTCACTTTTCTTTGAAAACAGATACGCTAGC 196 ACATGAGATTTTCTATTGACTCCGCATTCAAAACTTCACTTTTCTTTGAAAACAGATACGCTAGC * 17766104 TGTAAAATCAGCTGGGTATCCAATTTTCTAGTGAAATTTTGAACATTGTCACAGTTGAAAATTTT 261 TGTAAAATGAGCTGGGTATCCAATTTTCTAGTGAAATTTTGAACATTGTCACAGTTGAAAATTTT 17766169 TCC 326 TCC * 17766172 ATAGCTCTATCCGTTGCAGAGATACATCGGGTTAAAGTTTGAGCGGCGAGAGAGTGTGAGGGAGG 1 ATAGCTCTATCCGTTGCAGAGATACATCGGGTTAAAGTTTGAGCGGCGAGAGAGTATGAGGGAGG * ** * * * * * 17766237 GGGAGAGTGCAGGCAGGCGGACGGCCTGCGTCTCTCCCCCTCCCACACTATTTCGCTCACTCTGA 66 GGGAGAGTGCAGACAAACGGACGGCCTGCGTCTCTCCTCCTCCCACACTCTTTTGCTTACTCTGG * * 17766302 CTCAAACGCGCATATCTCAGCGAGGAGTGGAGATATCAAAAAACTTTCAACTGACGAAATG 131 TTCAAACGCGCATATCTCAGCGGGGAGTGGAGATATCAAAAAACTTTCAACTGACGAAATG 17766363 ATCAGCATGC Statistics Matches: 833, Mismatches: 14, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 328 833 1.00 ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28 Consensus pattern (328 bp): ATAGCTCTATCCGTTGCAGAGATACATCGGGTTAAAGTTTGAGCGGCGAGAGAGTATGAGGGAGG GGGAGAGTGCAGACAAACGGACGGCCTGCGTCTCTCCTCCTCCCACACTCTTTTGCTTACTCTGG TTCAAACGCGCATATCTCAGCGGGGAGTGGAGATATCAAAAAACTTTCAACTGACGAAATGTTCT ACATGAGATTTTCTATTGACTCCGCATTCAAAACTTCACTTTTCTTTGAAAACAGATACGCTAGC TGTAAAATGAGCTGGGTATCCAATTTTCTAGTGAAATTTTGAACATTGTCACAGTTGAAAATTTT TCC Left flanking sequence: Indices 17764688 -- 17765187 GGTGTTCTTCCGGTACCCGGAAAGGCCTGCGGTTCCGATTCTTCAAGGCCTGAATGTCCACGTGA AGCCCGGGCAGACACTTGCATTGGTGGGACCTAGTGGTTGTGGAAAGAGTACGGTTATTTCATTG TTGGAGAGGTTATACGACCCATTGGAGGGTGCAGTGGTGGGTTTTTTCAAATTTTTAAATTTTAA ATTCGAAAATCTTTGCTTCATTCCCAAATTTTCCAGACAGTCGACAACAATGACCTCCGCCAAAT GAACCCGAAACATCTCCGCAAGCACATTGCTCTCGTCTCCCAGGAGCCCATTCTCTTCGATACTT CGATTAGAGAAAATATTGTATATGGTCTTCAGCCTGGCGAGTACACCCATGAACAGATTGAAACT GCGTGTTCAAAGGCCAATATTCACAAGTTTATCGATGAACTTCCTGATGTAAGTTGACTGATAAT GTTAAGCAGAAAATTTCAAGTATTTTGTTAGTTGGAAGCTTGTTG Right flanking sequence: Indices 17766363 -- 17766862 ATCAGCATGCAATTTTTCTTCGAATTAGTTTTTAACTGAAATTCTATAGATTTCCAAATTTTCTG AAAATCATGAGCTATATGAGCTATGCATTTCAACGTGTTCCCTGTAAAATTTTTAATATTTTGCC ATTTTAAAACGATTAGATGCCTCAAACCATTGCAAAGTTACAACGGTTCAAAGTTTGCGCGGTGA GAGAGTGTAAGGGAAGGGGAGAGTGCAGACTTTCTCGTCACCTGCGTCTCTCCCTTTCCCACACT GTCTTGCCTCCTCTAATTCAAACGCGTATATCTCTCCAACGGTGAGAGTAATCGAAACATTTTCA ACTGAGGATATGATCAGCTTAACATTTTACACCGAATAGATAAAAAAAAACAATATTTTTTAATT ACGAAATACATTTTTTCAGGGCTACGAAACCCGTGTCGGAGAGAAGGGAACCCAGTTGTCCGGTG GCCAAAAACAACGTATCGCCATCGCGCGAGCCCTCATTAGAAATC Found at i:17772946 original size:201 final size:201 Alignment explanation
Indices: 17772593--17773615 Score: 1974 Period size: 201 Copynumber: 5.1 Consensus size: 201 17772583 TGTAGCAATA * * * * * 17772593 CTGTGGGAGTACTGTATATTGAAAAGGGTGTTGTGTGGGTACTGTATGGGTACTGTAGCAGTACT 1 CTGTAGGGGTACTGTAGATTGAAGAGGGTGTTGTG-GGGTACTGTAGGGGTACTGTAGCAGTACT 17772658 GTGGGAGTACTGTAAATTGACGATGGTGTTGTGGGGGTACAGTGGGGGTACTGTAGAGCGTAGAG 65 GTGGGAGTACTGTAAATTGACGATGGTGTTGTGGGGGTACAGTGGGGGTACTGTAGAGCGTAGAG * 17772723 GGCACTATGGGGAGTACTGTACCGGAATTTTGAGAATGACTATTGGGATATTGTAGTGGTAATGT 130 GGCACTATGGGGAGTACTGTACCGGAATTTTGAGAGTGACTATTGGGATATTGTAGTGGTAATGT 17772788 CAGGGTC 195 CAGGGTC ** 17772795 CTGTAGCAGTACTGTAGATTGAAGAGGGTGTTGTGGGGTACTGTAGGGGTACTGTAGCAGTACTG 1 CTGTAGGGGTACTGTAGATTGAAGAGGGTGTTGTGGGGTACTGTAGGGGTACTGTAGCAGTACTG 17772860 TGGGAGTACTGTAAATTGACGATGGTGTTGTGGGGGTACAGTGGGGGTACTGTAGAGCGTAGAGG 66 TGGGAGTACTGTAAATTGACGATGGTGTTGTGGGGGTACAGTGGGGGTACTGTAGAGCGTAGAGG 17772925 GCACTATGGGGAGTACTGTACCGGAATTTTGAGAGTGACTATTGGGATATTGTAGTGGTAATGTC 131 GCACTATGGGGAGTACTGTACCGGAATTTTGAGAGTGACTATTGGGATATTGTAGTGGTAATGTC 17772990 AGGGTC 196 AGGGTC 17772996 CTGTAGGGGTACTGTAGATTGAAGAGGGTGTTGTGGGGTACTGTAGGGGTACTGTAGCAGTACTG 1 CTGTAGGGGTACTGTAGATTGAAGAGGGTGTTGTGGGGTACTGTAGGGGTACTGTAGCAGTACTG 17773061 TGGGAGTACTGTAAATTGACGATGGTGTTGTGGGGGTACAGTGGGGGTACTGTAGAGCGTAGAGG 66 TGGGAGTACTGTAAATTGACGATGGTGTTGTGGGGGTACAGTGGGGGTACTGTAGAGCGTAGAGG 17773126 GCACTATGGGGAGTACTGTACCGGAATTTTGAGAGTGACTATTGGGATATTGTAGTGGTAATGTC 131 GCACTATGGGGAGTACTGTACCGGAATTTTGAGAGTGACTATTGGGATATTGTAGTGGTAATGTC 17773191 AGGGTC 196 AGGGTC 17773197 CTGTAGGGGTACTGTAGATTGAAGAGGGTGTTGTGGGGTACTGTAGGGGTACTGTAGCAGTACTG 1 CTGTAGGGGTACTGTAGATTGAAGAGGGTGTTGTGGGGTACTGTAGGGGTACTGTAGCAGTACTG 17773262 TGGGAGTACTGTAAATTGACGATGGTGTTGTGGGGGTACAGTGGGGGTACTGTAGAGCGTAGAGG 66 TGGGAGTACTGTAAATTGACGATGGTGTTGTGGGGGTACAGTGGGGGTACTGTAGAGCGTAGAGG 17773327 GCACTATGGGGAGTACTGTACCGGAATTTTGAGAGTGACTATTGGGATATTGTAGTGGTAATGTC 131 GCACTATGGGGAGTACTGTACCGGAATTTTGAGAGTGACTATTGGGATATTGTAGTGGTAATGTC 17773392 AGGGTC 196 AGGGTC 17773398 CTGTAGGGGTACTGTAGATTGAAGAGGGTGTTGTGGGGTACTGTAGGGGTACTGTAGCAGTACTG 1 CTGTAGGGGTACTGTAGATTGAAGAGGGTGTTGTGGGGTACTGTAGGGGTACTGTAGCAGTACTG 17773463 TGGGAGTACTGTAAATTGACGATGGTGTTGTGGGGGTACAGTGGGGGTACTGTAGAGCGTAGAGG 66 TGGGAGTACTGTAAATTGACGATGGTGTTGTGGGGGTACAGTGGGGGTACTGTAGAGCGTAGAGG * 17773528 GCACTATGGGGAGTACTGTACCGAAATTTTGAGAGTGACTATTGGGATATTGTAGTGGTAATGTC 131 GCACTATGGGGAGTACTGTACCGGAATTTTGAGAGTGACTATTGGGATATTGTAGTGGTAATGTC 17773593 AGGGTC 196 AGGGTC 17773599 CTGTAGGGGTACTGTAG 1 CTGTAGGGGTACTGTAG 17773616 GGGTACTGTA Statistics Matches: 812, Mismatches: 9, Indels: 1 0.99 0.01 0.00 Matches are distributed among these distances: 201 781 0.96 202 31 0.04 ACGTcount: A:0.22, C:0.10, G:0.39, T:0.29 Consensus pattern (201 bp): CTGTAGGGGTACTGTAGATTGAAGAGGGTGTTGTGGGGTACTGTAGGGGTACTGTAGCAGTACTG TGGGAGTACTGTAAATTGACGATGGTGTTGTGGGGGTACAGTGGGGGTACTGTAGAGCGTAGAGG GCACTATGGGGAGTACTGTACCGGAATTTTGAGAGTGACTATTGGGATATTGTAGTGGTAATGTC AGGGTC Left flanking sequence: Indices 17772093 -- 17772592 GCTCACGGAGCATCTTCCACACTTTTAATGCTTTACCTTCAGAGGCCTTACAAGAAGTTTTGCTT GAAAATTTTAAACTTATCGTATAATACAGAAAATTCTTGAGTTTGAAATAATAGTTTGAAATAAT AAAAATTTATTTCTTAACCGCCAAACTATTGGGACTAACACTTTTATTGAACATTTCAAAATAGA TATCCCCTTCGGTTTCCTTTGGTTTTGTAAATGGGAAAATCGATTTTCTCCGGATTACGGCTACC GTATTCGGGCGGATTTTGTGCTGCAGGGTACGGTAGTAAGATAGAAAAACTTTCCGAAATGATTC CATCAACGCGACCACCGTAGGCACAACCACGAGAGGATCACTGAAATAATTGATGTTAGAACAGT AGAAGGTATTGTAATAAGAACTGGGGGGGGGGGGGGGGGGTACTGTAGAGGGTAGTGTAGGGAGT ACTGTAACAGTACTGTTGGAGTACTGTAGGGATACTGTAGCAATA Right flanking sequence: Indices 17773616 -- 17774115 GGGTACTGTAGCGGTACAGCCGAAGTACTGCAGGGACTTTAGCGGTACTGTGAGAGTAACTGTAG CGGTATTATGGGAGTAGTGTAGGTGTACTGTAGGAGTACTGTAGAAAATACAATAGGAGTACTGT AGGGGTACTGTAGGAGTACTCACGTGTGGACGGTCGTGTCAAATATCAAATTGCACCACATTTGC ACCTCATCCGAAAAATCTAGAATAATTGGTAGACATTCTGCCAAAATCAGCATTATTATAAAAGC GCCGACGACAACTACCGCAGGGCGCATTAACTGAAATATGGAGACAATTGATCATTAAATGGGCG GAGCCCAACTCACCCGACAACTGCGCACATTTTCCTGTAACTGATACTTGATGCTCAGCGTATAA AGGACCATTGTATTATCATGTCTTATCAGAGAATCGAGACGCTTTCGATTCAGAAAATAAATAAT TTCCAGTAAAATTATGGATACAACAGCCACGGCGAGACACACGAT Found at i:17862838 original size:108 final size:107 Alignment explanation
Indices: 17862650--17862864 Score: 400 Period size: 108 Copynumber: 2.0 Consensus size: 107 17862640 GAAAATTTAA * 17862650 GCGATTTTTGGCCTAAAAATTGGAAATTTTAAGCGATTTTTGCCTAAAAATTGGAAATTTTAAGC 1 GCGATTTTTGGCCTAAAAATTGGAAAATTTAAGCGATTTTTGCCTAAAAATTGGAAATTTTAAGC * * 17862715 GATTTTTAAGCTTAAAAATTGGAAATTTTAAGCGATTTTTGG 66 GATTTTCAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGG 17862757 GCGATTTTTGGCCTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAAG 1 GCGATTTTTGGCCTAAAAATTGGAAAATTTAAGCGATTTTT-GCCTAAAAATTGGAAATTTTAAG 17862822 CGATTTTCAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGG 65 CGATTTTCAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGG 17862865 CCTAAAAATT Statistics Matches: 104, Mismatches: 3, Indels: 1 0.96 0.03 0.01 Matches are distributed among these distances: 107 40 0.38 108 64 0.62 ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38 Consensus pattern (107 bp): GCGATTTTTGGCCTAAAAATTGGAAAATTTAAGCGATTTTTGCCTAAAAATTGGAAATTTTAAGC GATTTTCAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGG Left flanking sequence: Indices 17862150 -- 17862649 TTTTTTGGAAACAATTTGCGAATTTTCAGGCCAAAAAAGAGAGATTTCGCTGAAAATTTCAAGTT TTAGCTGGAAAAACGTGAAAAATGGTTAATTTGGCGGAAATTTAAAAAAGAAACCGCGAAAATTC GCTCAAAAAATTGAAGAATAGATTACAAAAATGAAAGGCGCATAAAGGTTTTCCGGCATCGAGGT CTCACCACGATTACCGTATCTGGCGGAATTTCGGTGAATTTTCGCTTAAAAATTGGATTTACAGC TTTAAGCGATTTTTGCCTAAAAATTGGAAATTTTAAGCGATTATAAGCTTAAAAATTGGAAATTT TAAGCGATTTTTGCCTAAAAATTGGAAATTTTAAGCGATTTTTAAGCTTAAAAATTGGAAATTTT AAGCGATTTTTGGGCGATTTTTGGCCTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAAAT TGGAAATTTTAAGCGATTTTCAAGCTTAAAAATTGGAAAATTTAA Right flanking sequence: Indices 17862865 -- 17863364 CCTAAAAATTGGAAATTTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAAGCGATTTTTAAG CTTAAAAATTGGAAATTTTAAGCGATTTTTGCCTAAAAATTGGAAATTTTAAGCGATTTTTAAGC TTAAAAATTGGAAATTTTAAGCGATTTTTGGGCGATTTTTGGCCTAAAAATTGGAAAATTTAAGC GATTTTTGGCCTAAAAATTGGAAATTTTAAGCGATTTTCAAGCTTAAAAATTGGAAAATTTAAGC GATTTTTGGCCTAAAAATTGGAAATTTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAAGCG ATTTTTAAGCTTAAAAATTGGAAATTTTAAGCGATTTTTGCCTAAAAATTGGAAATTTTAAGCGA TTTTTAAGCTTAAAAATTGGAAATTTTAAGCGATTTTTGGGCGATTTTTGGCCTAAAAATTGGAA AATTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAAGCGATT Found at i:17862887 original size:269 final size:268 Alignment explanation
Indices: 17862410--17863821 Score: 2138 Period size: 269 Copynumber: 5.3 Consensus size: 268 17862400 GATTTACAGC * 17862410 TTTAAGCGATTTTTGCCTAAAAATTGGAAATTTTAAGCGA-TTATAAGCTTAAAAATTGGAAATT 1 TTTAAGCGATTTTTGCCTAAAAATTGGAAATTTTAAGCGATTTTTAAGCTTAAAAATTGGAAATT **** *** ** ** ** * *** 17862474 TTAAGCGATTTTTGCCTAAAAATTGG---AAATTTTAAGCGATTTTTAAGCTTAAAAATTGG--- 66 TTAAGCGATTTTTGGGCGATTTTTGGCCTAAAAATT--GGAAAATTTAAGC--GATTTTTGGCCT ** ** * ** ** * 17862533 AAATTTTAAGCGATTTTTGGGCGATTTT-TGGCCTAAAAATTGGAAAATTTAAGCGATTTTTGGC 127 AAAAATT--GGAAATTTTAAGCGATTTTCAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGGC ** * * * 17862597 CTAAAAATTGGAAATTTTAAGCGATTTTCAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGGC 190 CTAAAAATTGGAAATTTTAAGCGATTTT-TGGCCTAAAAATTGGAAATTTTAAGCGATTTTTAGC * 17862662 CTAAAAATTGGAAAT 254 TTAAAAATTGGAAAT 17862677 TTTAAGCGATTTTTGCCTAAAAATTGGAAATTTTAAGCGATTTTTAAGCTTAAAAATTGGAAATT 1 TTTAAGCGATTTTTGCCTAAAAATTGGAAATTTTAAGCGATTTTTAAGCTTAAAAATTGGAAATT 17862742 TTAAGCGATTTTTGGGCGATTTTTGGCCTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAA 66 TTAAGCGATTTTTGGGCGATTTTTGGCCTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAA 17862807 ATTGGAAATTTTAAGCGATTTTCAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAA 131 ATTGGAAATTTTAAGCGATTTTCAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAA 17862872 ATTGGAAATTTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAAGCGATTTTTAAGCTTAAAA 196 ATTGGAAATTTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAAGCGATTTTT-AGCTTAAAA 17862937 ATTGGAAAT 260 ATTGGAAAT 17862946 TTTAAGCGATTTTTGCCTAAAAATTGGAAATTTTAAGCGATTTTTAAGCTTAAAAATTGGAAATT 1 TTTAAGCGATTTTTGCCTAAAAATTGGAAATTTTAAGCGATTTTTAAGCTTAAAAATTGGAAATT 17863011 TTAAGCGATTTTTGGGCGATTTTTGGCCTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAA 66 TTAAGCGATTTTTGGGCGATTTTTGGCCTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAA 17863076 ATTGGAAATTTTAAGCGATTTTCAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAA 131 ATTGGAAATTTTAAGCGATTTTCAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAA 17863141 ATTGGAAATTTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAAGCGATTTTTAAGCTTAAAA 196 ATTGGAAATTTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAAGCGATTTTT-AGCTTAAAA 17863206 ATTGGAAAT 260 ATTGGAAAT 17863215 TTTAAGCGATTTTTGCCTAAAAATTGGAAATTTTAAGCGATTTTTAAGCTTAAAAATTGGAAATT 1 TTTAAGCGATTTTTGCCTAAAAATTGGAAATTTTAAGCGATTTTTAAGCTTAAAAATTGGAAATT 17863280 TTAAGCGATTTTTGGGCGATTTTTGGCCTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAA 66 TTAAGCGATTTTTGGGCGATTTTTGGCCTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAA * 17863345 ATTGGAAATTTTAAGCGATTTTTAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAA 131 ATTGGAAATTTTAAGCGATTTTCAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAA * * * * 17863410 ATTGGAAATTTTAAGCGATTTTTAAGCTTAAAAATTGGAAATTTTAAGCGATTTTTGGCCTAAAA 196 ATTGGAAATTTTAAGCGATTTTT-GGCCTAAAAATTGGAAATTTTAAGCGATTTTTAGCTTAAAA 17863475 ATTGGAAAT 260 ATTGGAAAT * * 17863484 TTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAAGCGATTTTT-GGCCTAAAAATTGGAAAT 1 TTTAAGCGATTTTT-GCCTAAAAATTGGAAATTTTAAGCGATTTTTAAGCTTAAAAATTGGAAAT ** * * * 17863548 TTTAAGCGA--TTT-----A---TAAGCTTAAAAATTGGAAATTTTAAGCGATTTTTGGCTTAAA 65 TTTAAGCGATTTTTGGGCGATTTTTGGCCTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAA * * * 17863603 AATTGGAAATTTTAAGCGATTTTTAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTAAGCTTAA 130 AATTGGAAATTTTAAGCGATTTTCAAGCTTAAAAATTGGAAAATTTAAGCGATTTTT-GGCCTAA * * * * 17863668 AAATTGGAAAATTTAAGCGATTTTTGGCCTAAAAATTGGAAAATTTAAGCGATTATAAGCTTAAA 194 AAATTGGAAATTTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAAGCGATTTTTAGCTTAAA * 17863733 AATTCGAAAT 259 AATTGGAAAT * * * * 17863743 TTTAAGCGATTTTTAAGCTTAAAAATTCGAAATTTTAAGCGATTTTT-GGCCTAAAAATTGGAAA 1 TTTAAGCGATTTTT--GCCTAAAAATTGGAAATTTTAAGCGATTTTTAAGCTTAAAAATTGGAAA * * 17863807 ATTTAAGCGAGTTTT 64 TTTTAAGCGATTTTT 17863822 AAGCTTAAAA Statistics Matches: 1069, Mismatches: 61, Indels: 35 0.92 0.05 0.03 Matches are distributed among these distances: 259 150 0.14 260 84 0.08 262 4 0.00 267 48 0.04 268 85 0.08 269 627 0.59 270 66 0.06 271 5 0.00 ACGTcount: A:0.37, C:0.08, G:0.17, T:0.37 Consensus pattern (268 bp): TTTAAGCGATTTTTGCCTAAAAATTGGAAATTTTAAGCGATTTTTAAGCTTAAAAATTGGAAATT TTAAGCGATTTTTGGGCGATTTTTGGCCTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAA ATTGGAAATTTTAAGCGATTTTCAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAA ATTGGAAATTTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAAGCGATTTTTAGCTTAAAAA TTGGAAAT Left flanking sequence: Indices 17861910 -- 17862409 TGTTTTGAATAAGAAAATGGTGAAAATTCTTTTTTGGATTTCCCGCCAACTTTAGGCAAAAACTT GATTTTTAGGATTAAATATGCGAATTTTAACCCAAAAATATCGAAAAAAAAACCGATTAAAAACT CGCTTTTAGCAGTGAAAAACGTCAAAATTCACTCCAAAAATGAAGAAATGATTACAAAATTTAAA GGCGCATTGAATTTCGAGAACAGCTGGGTCTCACCACGATTACCGTTTTTTGGAAACAATTTGCG AATTTTCAGGCCAAAAAAGAGAGATTTCGCTGAAAATTTCAAGTTTTAGCTGGAAAAACGTGAAA AATGGTTAATTTGGCGGAAATTTAAAAAAGAAACCGCGAAAATTCGCTCAAAAAATTGAAGAATA GATTACAAAAATGAAAGGCGCATAAAGGTTTTCCGGCATCGAGGTCTCACCACGATTACCGTATC TGGCGGAATTTCGGTGAATTTTCGCTTAAAAATTGGATTTACAGC Right flanking sequence: Indices 17863822 -- 17864321 AAGCTTAAAATTACTTAAATTCTGCAATTTTTAGGCTTAAAAATCGCTTAAAATTTCCAATTTTT AAGCTTAAAAATCGCTTAAATTTTCCAATTTTCCGGTCTAAATTGGTCTAAAAATATCAAAATAA ATAAGATTCATGATAGTGGTGGAGTCGTGTGATTTTTACAACAAAAAAAAAACGAGAAAAAATTT AAATATCTCCCAAATCTTCCAAATATTGCACTTGTTGCTGTGGCTGTTGATCATAAGCAATATTA AAATCATCAGATAATCCAGATGGTCCAGCAATTCCTCTCGGATCTTCATCCACATCAATTCCACC AAAATTCCGATCGAATTTCGCCGATTCCTTTTGATTTTTACGTTTTGGACGGGTTTCTTTGTCGG AAATTGAGTGAATATTTGCTCCGGCAAGTGTAGTTTTCCATAAAAGTGATTTGGCTTTTTGAGTT GCCCGATCACAAGTGACGTTTACTCTGAAAATATTAGGAAATTAG Found at i:17863032 original size:108 final size:108 Alignment explanation
Indices: 17862918--17863133 Score: 381 Period size: 108 Copynumber: 2.0 Consensus size: 108 17862908 GAAATTTTAA * * 17862918 GCGATTTTTAAGCTTAAAAATTGGAAATTTTAAGCGATTTTT-GCCTAAAAATTGGAAATTTTAA 1 GCGATTTTT-AGCCTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAA * * 17862982 GCGATTTTTAAGCTTAAAAATTGGAAATTTTAAGCGATTTTTGG 65 GCGATTTTCAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGG * 17863026 GCGATTTTTGGCCTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAAG 1 GCGATTTTTAGCCTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAAG 17863091 CGATTTTCAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGG 66 CGATTTTCAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGG 17863134 CCTAAAAATT Statistics Matches: 102, Mismatches: 5, Indels: 2 0.94 0.05 0.02 Matches are distributed among these distances: 107 29 0.28 108 73 0.72 ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38 Consensus pattern (108 bp): GCGATTTTTAGCCTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAAG CGATTTTCAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGG Left flanking sequence: Indices 17862418 -- 17862917 ATTTTTGCCTAAAAATTGGAAATTTTAAGCGATTATAAGCTTAAAAATTGGAAATTTTAAGCGAT TTTTGCCTAAAAATTGGAAATTTTAAGCGATTTTTAAGCTTAAAAATTGGAAATTTTAAGCGATT TTTGGGCGATTTTTGGCCTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAAATTGGAAATT TTAAGCGATTTTCAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAAATTGGAAATT TTAAGCGATTTTTGCCTAAAAATTGGAAATTTTAAGCGATTTTTAAGCTTAAAAATTGGAAATTT TAAGCGATTTTTGGGCGATTTTTGGCCTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAAA TTGGAAATTTTAAGCGATTTTCAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAAA TTGGAAATTTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAA Right flanking sequence: Indices 17863134 -- 17863633 CCTAAAAATTGGAAATTTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAAGCGATTTTTAAG CTTAAAAATTGGAAATTTTAAGCGATTTTTGCCTAAAAATTGGAAATTTTAAGCGATTTTTAAGC TTAAAAATTGGAAATTTTAAGCGATTTTTGGGCGATTTTTGGCCTAAAAATTGGAAAATTTAAGC GATTTTTGGCCTAAAAATTGGAAATTTTAAGCGATTTTTAAGCTTAAAAATTGGAAAATTTAAGC GATTTTTGGCCTAAAAATTGGAAATTTTAAGCGATTTTTAAGCTTAAAAATTGGAAATTTTAAGC GATTTTTGGCCTAAAAATTGGAAATTTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAAGCG ATTTTTGGCCTAAAAATTGGAAATTTTAAGCGATTTATAAGCTTAAAAATTGGAAATTTTAAGCG ATTTTTGGCTTAAAAATTGGAAATTTTAAGCGATTTTTAAGCTTA Found at i:17863301 original size:108 final size:108 Alignment explanation
Indices: 17863187--17863402 Score: 388 Period size: 108 Copynumber: 2.0 Consensus size: 108 17863177 GAAATTTTAA * * 17863187 GCGATTTTTAAGCTTAAAAATTGGAAATTTTAAGCGATTTTT-GCCTAAAAATTGGAAATTTTAA 1 GCGATTTTT-AGCCTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAA * 17863251 GCGATTTTTAAGCTTAAAAATTGGAAATTTTAAGCGATTTTTGG 65 GCGATTTTTAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGG * 17863295 GCGATTTTTGGCCTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAAG 1 GCGATTTTTAGCCTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAAG 17863360 CGATTTTTAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGG 66 CGATTTTTAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGG 17863403 CCTAAAAATT Statistics Matches: 103, Mismatches: 4, Indels: 2 0.94 0.04 0.02 Matches are distributed among these distances: 107 29 0.28 108 74 0.72 ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38 Consensus pattern (108 bp): GCGATTTTTAGCCTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAAG CGATTTTTAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGG Left flanking sequence: Indices 17862687 -- 17863186 TTTTGCCTAAAAATTGGAAATTTTAAGCGATTTTTAAGCTTAAAAATTGGAAATTTTAAGCGATT TTTGGGCGATTTTTGGCCTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAAATTGGAAATT TTAAGCGATTTTCAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAAATTGGAAATT TTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAAGCGATTTTTAAGCTTAAAAATTGGAAATT TTAAGCGATTTTTGCCTAAAAATTGGAAATTTTAAGCGATTTTTAAGCTTAAAAATTGGAAATTT TAAGCGATTTTTGGGCGATTTTTGGCCTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAAA TTGGAAATTTTAAGCGATTTTCAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAAA TTGGAAATTTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAA Right flanking sequence: Indices 17863403 -- 17863902 CCTAAAAATTGGAAATTTTAAGCGATTTTTAAGCTTAAAAATTGGAAATTTTAAGCGATTTTTGG CCTAAAAATTGGAAATTTTAAGCGATTTTTGGCCTAAAAATTGGAAATTTTAAGCGATTTTTGGC CTAAAAATTGGAAATTTTAAGCGATTTATAAGCTTAAAAATTGGAAATTTTAAGCGATTTTTGGC TTAAAAATTGGAAATTTTAAGCGATTTTTAAGCTTAAAAATTGGAAAATTTAAGCGATTTTTAAG CTTAAAAATTGGAAAATTTAAGCGATTTTTGGCCTAAAAATTGGAAAATTTAAGCGATTATAAGC TTAAAAATTCGAAATTTTAAGCGATTTTTAAGCTTAAAAATTCGAAATTTTAAGCGATTTTTGGC CTAAAAATTGGAAAATTTAAGCGAGTTTTAAGCTTAAAATTACTTAAATTCTGCAATTTTTAGGC TTAAAAATCGCTTAAAATTTCCAATTTTTAAGCTTAAAAATCGCT Found at i:17883734 original size:379 final size:379 Alignment explanation
Indices: 17882946--17884336 Score: 2362 Period size: 379 Copynumber: 3.6 Consensus size: 379 17882936 GCAAACCGGC ** * * * * * * * * 17882946 AATTTGCCGGAAT-TGAAATTTCCTGAAAATCGGCAAATCGCCGAAAATGAAAATTTCTGGCAAA 1 AATTTGCCGGAATCCAAAATATCCGGCAAATCGGCAATTTGCCGGAATTGAAAATTTCCGGCAAA ** * * 17883010 TCAACAATTTGCAGAAATCGAAAATTTCGGGCAAATCTGCAATTTGCCAAAAATGAAAATTTCCG 66 TCAGAAATTTGC------CGAAAAATTCGGGCAAATCGGCAATTTGCCAAAAATGAAAATTTCCG * 17883075 GCAAATCAAAAACTTGCCGAAATCGAAAATTTCGGGCAAATCGGCAAATTGCTGAGATTGAACTT 125 GCAAATCAAAAATTTGCCGAAATCGAAAATTTCGGGCAAATCGGCAAATTGCTGAGATTGAACTT 17883140 TTCCGGCAAATCGGCAATTCGCCGAAATTTAAAATTTCCGACAAATCGGCAAATTGCCGGAATCC 190 TTCCGGCAAATCGGCAATTCGCCGAAATTTAAAATTTCCGACAAATCGGCAAATTGCCGGAATCC 17883205 AAATTTTCCAGCAAATTGTCAAATTGCTGAGATTGAACTTTTCCGACAAATCGGCAATTTGTCAA 255 AAATTTTCCAGCAAATTGTCAAATTGCTGAGATTGAACTTTTCCGACAAATCGGCAATTTGTCAA 17883270 AATTGAAATTTTCCAGCAAATTGGCAAATTGCCGGAATCCAAAATTTCCGGCAAATCTAA 320 AATTGAAATTTTCCAGCAAATTGGCAAATTGCCGGAATCCAAAATTTCCGGCAAATCTAA 17883330 AATTTGCCGGAATCCAAAATATCCGGCAAATCGGCAATTTGCCGGAATTGAAAATTTCCGGCAAA 1 AATTTGCCGGAATCCAAAATATCCGGCAAATCGGCAATTTGCCGGAATTGAAAATTTCCGGCAAA * 17883395 TCAGAAATTTGCCGAAAAATTCGGGCAAATCTGCAATTTGCCAAAAATGAAAATTTCCGGCAAAT 66 TCAGAAATTTGCCGAAAAATTCGGGCAAATCGGCAATTTGCCAAAAATGAAAATTTCCGGCAAAT 17883460 CAAAAATTTGCCGAAATCGAAAATTTCGGGCAAATCGGCAAATTGCTGAGATTGAACTTTTCCGG 131 CAAAAATTTGCCGAAATCGAAAATTTCGGGCAAATCGGCAAATTGCTGAGATTGAACTTTTCCGG 17883525 CAAATCGGCAATTCGCCGAAATTTAAAATTTCCGACAAATCGGCAAATTGCCGGAATCCAAATTT 196 CAAATCGGCAATTCGCCGAAATTTAAAATTTCCGACAAATCGGCAAATTGCCGGAATCCAAATTT 17883590 TCCAGCAAATTGTCAAATTGCTGAGATTGAACTTTTCCGACAAATCGGCAATTTGTCAAAATTGA 261 TCCAGCAAATTGTCAAATTGCTGAGATTGAACTTTTCCGACAAATCGGCAATTTGTCAAAATTGA 17883655 AATTTTCCAGCAAATTGGCAAATTGCCGGAATCCAAAATTTCCGGCAAATCTAA 326 AATTTTCCAGCAAATTGGCAAATTGCCGGAATCCAAAATTTCCGGCAAATCTAA 17883709 AATTTGCCGGAATCCAAAATATCCGGCAAATCGGCAATTTGCCGGAATTGAAAATTTCCGGCAAA 1 AATTTGCCGGAATCCAAAATATCCGGCAAATCGGCAATTTGCCGGAATTGAAAATTTCCGGCAAA * 17883774 TCAGAAATTTGCCGAAAAATTCTGGCAAATCGGCAATTTGCCAAAAATGAAAATTTCCGGCAAAT 66 TCAGAAATTTGCCGAAAAATTCGGGCAAATCGGCAATTTGCCAAAAATGAAAATTTCCGGCAAAT 17883839 CAAAAATTTGCCGAAATCGAAAATTTCGGGCAAATCGGCAAATTGCTGAGATTGAACTTTTCCGG 131 CAAAAATTTGCCGAAATCGAAAATTTCGGGCAAATCGGCAAATTGCTGAGATTGAACTTTTCCGG 17883904 CAAATCGGCAATTCGCCGAAATTTAAAATTTCCGACAAATCGGCAAATTGCCGGAATCCAAATTT 196 CAAATCGGCAATTCGCCGAAATTTAAAATTTCCGACAAATCGGCAAATTGCCGGAATCCAAATTT 17883969 TCCAGCAAATTGTCAAATTGCTGAGATTGAACTTTTCCGACAAATCGGCAATTTGTCAAAATTGA 261 TCCAGCAAATTGTCAAATTGCTGAGATTGAACTTTTCCGACAAATCGGCAATTTGTCAAAATTGA 17884034 AATTTTCCAGCAAATTGGCAAATTGCCGGAATCCAAAATTTCCGGCAAATCTAA 326 AATTTTCCAGCAAATTGGCAAATTGCCGGAATCCAAAATTTCCGGCAAATCTAA 17884088 AATTTGCCGGAATCCAAAATATCCGGCAAATCGGCAATTTGCCGGAATTGAAAATTTCCGGCAAA 1 AATTTGCCGGAATCCAAAATATCCGGCAAATCGGCAATTTGCCGGAATTGAAAATTTCCGGCAAA * * * * * 17884153 TCAGAAATTTGCCGAAAAATTCTGGCAAATCGGCAATTTGCCGAAAATGAAAATTTACTGAAAAT 66 TCAGAAATTTGCCGAAAAATTCGGGCAAATCGGCAATTTGCCAAAAATGAAAATTTCCGGCAAAT * * ** * * * * ** * 17884218 CGACAAAGTGCCGAGATTG-AAATTTCCGGCAAATCGGCAAACCGGCAATATGCCGGAATTGAAA 131 CAAAAATTTGCCGAAATCGAAAATTTCGGGCAAATCGGC--A-----AAT-TGCTGAGATTGAAC * * * * * * * 17884282 TTTTCCGGCAAACCGGCAATTTGCCAAAAATGAAAATTTCCGGCAAATTGGCAAA 188 TTTTCCGGCAAATCGGCAATTCGCCGAAATTTAAAATTTCCGACAAATCGGCAAA 17884337 CCGGCATATT Statistics Matches: 960, Mismatches: 38, Indels: 16 0.95 0.04 0.02 Matches are distributed among these distances: 378 18 0.02 379 816 0.85 380 1 0.00 384 13 0.01 385 54 0.06 386 58 0.06 ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25 Consensus pattern (379 bp): AATTTGCCGGAATCCAAAATATCCGGCAAATCGGCAATTTGCCGGAATTGAAAATTTCCGGCAAA TCAGAAATTTGCCGAAAAATTCGGGCAAATCGGCAATTTGCCAAAAATGAAAATTTCCGGCAAAT CAAAAATTTGCCGAAATCGAAAATTTCGGGCAAATCGGCAAATTGCTGAGATTGAACTTTTCCGG CAAATCGGCAATTCGCCGAAATTTAAAATTTCCGACAAATCGGCAAATTGCCGGAATCCAAATTT TCCAGCAAATTGTCAAATTGCTGAGATTGAACTTTTCCGACAAATCGGCAATTTGTCAAAATTGA AATTTTCCAGCAAATTGGCAAATTGCCGGAATCCAAAATTTCCGGCAAATCTAA Left flanking sequence: Indices 17882446 -- 17882945 TTTACAAACAACTTGTTTAAATTAAATTAAATTATTAAGTTTTATATATTACTTCACGAATTCAT TTCTTCACTTCCAACAACTCCACAGCCTCTTCTTTCTCCTTAACTTCTTCCGATGCTTCCGATGC TTCCAGATCCTTCTGCTTCTTCCATCCTCTGAACAATGGCCCGGCGTCGAATTGATCGAGATCTT CGGGAAGCTTCTTGTTCTTGGTCTCTGGCTGCAGAAGAACCAGAAAAGCGGCGACGATCGACATT ATTGAGATCAGAATTGCGGGAGCGTCCTGGTTGATTGCTGTCTGGAATTTGGTACATTTTGTTAG AGTTTCAGTATAGTTTCCGGCAAATGGGCATTTTGCCGGAATTGAAAATTTCCGGCAAATCAAAA ATTTGCCGAAAATGAAAATTTCCGGCAAATCAAAAATTTGCCGAAAATGAAAATTCCGGCAAATC AAAAATTTGCCGAAAATGAAAATCCTGGCAAATCTGCAAACCGGC Right flanking sequence: Indices 17884337 -- 17884836 CCGGCATATTGCCGAAATGAAAATTTCCGGCAAATCGTCAAAATTGGAAATTTCCTGAAAATCGG CAAATCGGCAAACCGGCAGTTTGCCGAAATTGAAATTTGCGGAAAATCAAAAATTTGCCGAAAAT GAAAATCCTGGAAAATCGGCAAATCGCCGAAATTTAAAATTTCCGGCAAATCGGCAAGTCGGCAA ATCGGCAATTTTGTCAAAATTGAAATTTTCCTGAAAATCGGCAATTTGCCGAAAATGAAATTTTC CGACAAACCGGCAATTTTCCGGAATTAAAATTTTCCGGCAAATCGACAAATTGCCGAAATTTAAA ATTTCCGCCAAATTGGCAAATTGCCGGAATCCAAAATTTCCGGCAAATCTAAAATTTGCCGAAAA TGAAAATTCTGGCAAATCGACAATTTGTCAAAATTGAAATTTTCCAGCAAATTGGAAAATTGCCG GAACTGAAACTTTTCGGCAAATTGCCGGAATTGAAATTTCCGGCA Found at i:17959658 original size:105 final size:105 Alignment explanation
Indices: 17959346--17959645 Score: 565 Period size: 105 Copynumber: 2.9 Consensus size: 105 17959336 GCAAATATCT * 17959346 GGCAAATTGCAGTTTTCGAGTTTCCGGCAAATTCGTCAAATCGGCAAATTGGTGATATTGCCGAA 1 GGCAAATTGCCGTTTTCGAGTTTCCGGCAAATTCGTCAAATCGGCAAATTGGTGATATTGCCGAA 17959411 AATTCTGAAAACTGGCAAAATGCCCGACTTGAAAATTTAC 66 AATTCTGAAAACTGGCAAAATGCCCGACTTGAAAATTTAC 17959451 GGCAAATTGCCGTTTTCGAGTTTCCGGCAAATTCGTCAAATCGGCAAATTGGTGATATTGCCGAA 1 GGCAAATTGCCGTTTTCGAGTTTCCGGCAAATTCGTCAAATCGGCAAATTGGTGATATTGCCGAA 17959516 AATTCTGAAAACTGGCAAAATGCCCGACTTGAAAATTTAC 66 AATTCTGAAAACTGGCAAAATGCCCGACTTGAAAATTTAC * 17959556 GGCAAACTGCCGTTTTCGAGTTTCCGGCAAATTCGTCAAATCGGCAAATTGGTGATATTGCCGAA 1 GGCAAATTGCCGTTTTCGAGTTTCCGGCAAATTCGTCAAATCGGCAAATTGGTGATATTGCCGAA * ** 17959621 AATTCTGAAAACCGGCAATTTGCCC 66 AATTCTGAAAACTGGCAAAATGCCC 17959646 ATCTGTCCAA Statistics Matches: 190, Mismatches: 5, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 105 190 1.00 ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27 Consensus pattern (105 bp): GGCAAATTGCCGTTTTCGAGTTTCCGGCAAATTCGTCAAATCGGCAAATTGGTGATATTGCCGAA AATTCTGAAAACTGGCAAAATGCCCGACTTGAAAATTTAC Left flanking sequence: Indices 17958846 -- 17959345 CTTGGAGCACCACTTGCTGCTCCTCCAGTGGCTCCTCCAGCAGCTCCAGCTGCTCCAGCTCCTGA TGCTGAAGCACTAGCCTTCTTCTTCTTCTTTTCACGTTCCTCATCCTCCAAATCACTATCATCAT CACTTTCTTGTGGTGAGTCGTATTCAAATTCCCAATTTCCGTGAGCATCTTTACGCAACTTTCCA GAAGCCACTTTTTTCGACGAGTGATGGGCGACTACTGGAACTGAAGCGAGATTCTCAATGAGAGT ATGTACCAGATATTTCTTGTCTTTTCCTTTTTTGAAGAACGAATATTTCAAGAGTTCGGAGGCTG TTGGACGCTTTGCTGGGTCTTTCTGAAATTAGAATTGATAGAATCGGTGGCAAACCGGGGCAAAC CGGCAAAATGCCCGACTTGAAAATTTCCGGCAAATTGCCGTTTTTCGAGTTTCCGGCAAATTCGT CAAATCGGCAAATTGGTGATATTGCCGAAAGTCTGGCAAATATCT Right flanking sequence: Indices 17959646 -- 17960145 ATCTGTCCAATTTGCCGGAAAAGAGGCAATTGTCGGAATTGAGAATTTCCGGCAAATTCGGCAAA GCGGCAAAATGCCCGAATTGAAAATTTCAGCCAAAGTAGGCATATTGCCGTTTTTAAATTTCCGG CAAATCGTCAACTTGCCGGAATTTTAAATTTCCGGCAAATTGTAGTTTTGCACCTTTTTTTTGTT GGTAATTTCAATTTTAATCGACAAAATTGCACGCATCCTAAACTTTTCGGCAATTTGCCGGTTTG CCGAAAATGAAAATTTCTGGCAAATTCTCTAAATTGTCGATTTGCCGGAAATCCTCTATTCCCGT AATTGGATAAAATTGCCAAAAATTCTGAAAACCGGCAATTTGCCGGAATTGAAAATTGCCCGGAA AATCACCGAAAATGAAAATTTCCGGCAAATCGCTAACTTGCCGGAATTGTAAATTTCCGGCAAAT CGCCAACTTGCCGGAATTGAAAATATCCGGCAAATCGGCAACTTG Found at i:17985169 original size:173 final size:174 Alignment explanation
Indices: 17984907--17985362 Score: 737 Period size: 174 Copynumber: 2.6 Consensus size: 174 17984897 CCTAGAAACC * * 17984907 TGAATTTTTAATTAAATTTTATTGATTTTTTGACATTTTT-TACATTAAAATCCAGAAAAATCGA 1 TGAATTTTTAATTAAATTTTATTGATTTTTCGACATTTTTCTACATTAAAAACCAGAAAAATCGA 17984971 CGAATTTCGGGGTTTTTCGAGAAAAATTCGA-TTTTTTCTGATTTTTTTCCGGAAAAATCTGAAA 66 CGAATTTCGGGGTTTTTCGAGAAAAATTCGACTTTTTTCTGATTTTTTTCCGGAAAAATCTGAAA * 17985035 ATTTCGATTTTTCGACATTTTCCAGTTTAATTTTCTAGGAAATT 131 ATTTCGATTTTTCAACATTTTCCAGTTTAATTTTCTAGGAAATT * * 17985079 TGAATTTTTAATTAATTTTTATTGATTTTTCGACATTTTTCTACATTAAAAACCGGAAAAATCGA 1 TGAATTTTTAATTAAATTTTATTGATTTTTCGACATTTTTCTACATTAAAAACCAGAAAAATCGA ** * * * 17985144 AAAATTTTGGGGTTTTTCGAGAAAAATTCGATTTTTTTCTAATTTTTTTCCGGAAAAATCTGAAA 66 CGAATTTCGGGGTTTTTCGAGAAAAATTCGACTTTTTTCTGATTTTTTTCCGGAAAAATCTGAAA 17985209 ATTTCGATTTTTCAACATTTTCCAGTTTAATTTTCTAGGAAATT 131 ATTTCGATTTTTCAACATTTTCCAGTTTAATTTTCTAGGAAATT * * * * * 17985253 TGAATTTTTAATTAAGTTTTATTGATTTTTCGATA-TTTTCTATATT-AAAACCTGAACAATCGA 1 TGAATTTTTAATTAAATTTTATTGATTTTTCGACATTTTTCTACATTAAAAACCAGAAAAATCGA * * ** * * 17985316 CGAATTTCGGGTTTTCTCCCGAAAAATTCAACTTTTTTCCGATTTTT 66 CGAATTTCGGGGTTTTTCGAGAAAAATTCGACTTTTTTCTGATTTTT 17985363 CTCAGAATTT Statistics Matches: 257, Mismatches: 25, Indels: 4 0.90 0.09 0.01 Matches are distributed among these distances: 172 89 0.35 173 60 0.23 174 108 0.42 ACGTcount: A:0.31, C:0.12, G:0.12, T:0.46 Consensus pattern (174 bp): TGAATTTTTAATTAAATTTTATTGATTTTTCGACATTTTTCTACATTAAAAACCAGAAAAATCGA CGAATTTCGGGGTTTTTCGAGAAAAATTCGACTTTTTTCTGATTTTTTTCCGGAAAAATCTGAAA ATTTCGATTTTTCAACATTTTCCAGTTTAATTTTCTAGGAAATT Left flanking sequence: Indices 17984407 -- 17984906 CAAGACAATTAATCAATTTTCAGTATAGTGGCGATCATCGGTCGGGTACGCAAACACCGAGGTCC GCAAGCATCATTCGGTGTCACGACGCATTGTCGTCGTCTACCGTACCCCGGCGTTGAAATTTGGA GGTTTTGAGTTTTTTCAGCATGCAAAAAACCACCGAAAATCGATAAAATCCGAGGAACACGACGA TAAAATCCTGCAAAACGTGCATTTCCATCCGAAAAACTAATAAAAATGGACTGAAAATCGACAAA AATCGGGGGAAAACCGGCCTGCAAAATCAATAAAATGACGAAAAGCTCTCCCGAGACGAAAAACT CCGAGTTTTCAGTACTATTTCCTGGTGGTTAAGCTCCTTTTCTGGAGTCTCACGAATTATTAGCA TATTTGAGCAATTTTCTCATGTTTATTCAGTTTTTAGACGATTTTTAATGCTTTTTTTGTTTTTT TTTCCCTGTAAAAATCTGAAATTTTTGGTTTTTTTCCTAGAAACC Right flanking sequence: Indices 17985363 -- 17985862 CTCAGAATTTCGTCAATTTTCGCCAGTTTTTCATCATTTTCAATATTAAATTACTTGAAAATCAA GGAACTCTCACCGAAAAACGCACTTTTTCCAGTTTTTCTACGAGTTTTTTAGGAGAAACTGTAAA AATTGTGTATTTTACGGATTTTTGCATGAAAAATTGTGTAAAACCTATAGAAAATTCCGAAAATA TATGATTTAGTGGATTTTTTAACGATTTTTACATTAAAAAATGCATCAAAAACTGGGAAATTCAA CTATTTTTTGCAAAAAATCCCAAAAAAATTGCAATAATTCGTCGAGTACGGTAGGCGATGGTGTT TGCGTACTTCGCTGTTTGCGTACAAAACACCACGTAACTGTCTACCGTACTCAGCAATTTTTTTT GCGCTTTTTATCGATTTTTATGGATTTTCAGCGATTTTAACCCAAAATAAGTAAATTTTATGAAA ATTCTCATTTTTAATTAATTTTAACCGTCTTTTCCAACATTTTCC Found at i:18013091 original size:117 final size:117 Alignment explanation
Indices: 18012659--18013062 Score: 766 Period size: 117 Copynumber: 3.5 Consensus size: 117 18012649 TGTCCAACAT * * * ** 18012659 TTCCAGTAATTCCTCCGAGACCTCCGGTGGCTCCTCCTGCAGCTCCTCCAAGAATGCCAGATAGA 1 TTCCAGTTAATCCTCCGAGAGCTCCGGTGGCTCCTCCTGTGGCTCCTCCAAGAATGCCAGATAGA 18012724 CCCCCAAGACCTCCTGTTGCTCCTCCCAGAGCGTTAGTAAGACCTCCGACGG 66 CCCCCAAGACCTCCTGTTGCTCCTCCCAGAGCGTTAGTAAGACCTCCGACGG 18012776 TTCCAGTTAATCCTCCGAGAGCTCCGGTGGCTCCTCCTGTGGCTCCTCCAAGAATGCCAGATAGA 1 TTCCAGTTAATCCTCCGAGAGCTCCGGTGGCTCCTCCTGTGGCTCCTCCAAGAATGCCAGATAGA * 18012841 CCCCCAAGACCTCCTGTTGCTCCTTCCAGAGCGTTAGTAAGACCTCCGACGG 66 CCCCCAAGACCTCCTGTTGCTCCTCCCAGAGCGTTAGTAAGACCTCCGACGG 18012893 TTCCAGTTAATCCTCCGAGAGCTCCGGTGGCTCCTCCTGTGGCTCCTCCAAGAATGCCAGATAGA 1 TTCCAGTTAATCCTCCGAGAGCTCCGGTGGCTCCTCCTGTGGCTCCTCCAAGAATGCCAGATAGA 18012958 CCCCCAAGACCTCCTGTTGCTCCTCCCAGAGCGTTAGTAAGACCTCCGACGG 66 CCCCCAAGACCTCCTGTTGCTCCTCCCAGAGCGTTAGTAAGACCTCCGACGG 18013010 TTCCAGTTAATCCTCCGAGAGCTCCGGTGGCTCCTCCTGTGGCTCCTCCAAGA 1 TTCCAGTTAATCCTCCGAGAGCTCCGGTGGCTCCTCCTGTGGCTCCTCCAAGA 18013063 CCTCCAGTAA Statistics Matches: 280, Mismatches: 7, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 117 280 1.00 ACGTcount: A:0.19, C:0.36, G:0.22, T:0.23 Consensus pattern (117 bp): TTCCAGTTAATCCTCCGAGAGCTCCGGTGGCTCCTCCTGTGGCTCCTCCAAGAATGCCAGATAGA CCCCCAAGACCTCCTGTTGCTCCTCCCAGAGCGTTAGTAAGACCTCCGACGG Left flanking sequence: Indices 18012159 -- 18012658 ACGTTCATATTGCCCATCACCTACTCTCCTCATCAAAAAAAAAATTTCCAATTTCATGTTCCAAT TTCATCCCGATTTTAATCGTAATAAATCAAATTAAATCTCGCGCTTTTCAATTTTTTCCTGCAAA CAGAATGCAAACGGACCATTTCCAAAAAAAAACATCATTTGAAATGTATTTCGAGCAGGTGAGAA GATACTTAACTTAGGAAACGTCATGGTAAATCTTTGTTTGAAAGAAATGACGCCAAAAAAGATGT TTTCATAATTTTTGTTGATATCAATTGGCATGCGCTCATACCATCATCAGTTTTGTTACATAAAT AATTCCAAAATGTCAGACTCGTAGTGAAAGTAAATGTTGAATAAAATACGAATTCCCAATGTTCA ATTTATTGATTCCCAAAAAATACGAAAGAATTTATCAAGAGCTTAGGCAGCAATTCCTACTGCTG GAACTGCAGGGACATTTGGAATCGCACCAGCAACTTGTCCAACAT Right flanking sequence: Indices 18013063 -- 18013562 CCTCCAGTAAGATCTCCAACTGTTCCTGTTACTCCGTCCACTACTCCGGTGACTGCTCCAAGACT TCCTGTGGCTCCTCCAGCAACTCCTCCAACTGAGGAAGCCAATGATGTCACAAGTTCAAGCACGG TTGCCAAAAGCCCAGTCACCAATTCCAGCACAGCTTCCACTTTCACTTGATCAGTCTGAAACAGT CACTGTAATTTTTACCAAGATCCCGAAAACTTACAATGGCTCCAACATCTGGAACTTCTGGAATT TCTGGAACTTCTGGAGCTGGAAGATCCTGTGAGAATCCAAAGTTTGCAACACAGGCGATGAGGGC GAGAAGGTAGAAGATGGAATTCATGTTGAATGAATTGTGACTATTCCATTCTTACAGGGCTCTTT TTATATGGAACACTGACAAAAGAGATATCCAATAAAAACATATTATTCTGGATTTTCAGACATTC CTTTTGTAATGTGTATATGTTTTCAGAATACAACAATACTTCAAA Found at i:18045636 original size:106 final size:106 Alignment explanation
Indices: 18045517--18045848 Score: 608 Period size: 106 Copynumber: 3.1 Consensus size: 106 18045507 AATCTTTCTG 18045517 AAAATTTCCGGCAAATCGGCGATTTGCCTGAATTGAAAGTTTCCGGCAGAACGGAAATTTTTCCG 1 AAAATTTCCGGCAAATCGGCGATTTGCCTGAATTGAAAGTTTCCGGCAGAACGGAAATTTTTCCG * 18045582 AAAATGACAATTTCCGGCAAATCGTAATTTTGCCGGAATTT 66 AAAATGACAATTTCCGGCAAATCGTCATTTTGCCGGAATTT ** ** * 18045623 AAAATTTCCGGCAAATTAGCACTTTGCCGGAATTGAAAGTTTCCGGCAGAACGGAAATTTTTCCG 1 AAAATTTCCGGCAAATCGGCGATTTGCCTGAATTGAAAGTTTCCGGCAGAACGGAAATTTTTCCG 18045688 AAAATGACAATTTCCGGCAAATCGTCATTTTGCCGGAATTT 66 AAAATGACAATTTCCGGCAAATCGTCATTTTGCCGGAATTT 18045729 AAAATTTCCGGCAAATCGGCGATTTGCCTGAATTGAAAGTTTCCGGCAGAACGGAAATTTTTCCG 1 AAAATTTCCGGCAAATCGGCGATTTGCCTGAATTGAAAGTTTCCGGCAGAACGGAAATTTTTCCG * 18045794 AAAATAACAATTTCCGGCAAATCGTCATTTTGCCGGAATTT 66 AAAATGACAATTTCCGGCAAATCGTCATTTTGCCGGAATTT * 18045835 GAAATTTCCGGCAA 1 AAAATTTCCGGCAA 18045849 TTTTTCCGAA Statistics Matches: 213, Mismatches: 13, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 106 213 1.00 ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29 Consensus pattern (106 bp): AAAATTTCCGGCAAATCGGCGATTTGCCTGAATTGAAAGTTTCCGGCAGAACGGAAATTTTTCCG AAAATGACAATTTCCGGCAAATCGTCATTTTGCCGGAATTT Left flanking sequence: Indices 18045017 -- 18045516 CTCTGTGTAGTTTGTAGTCTGGCAGACCAATGGGGAAGACCTTTGGTCTGCCAGACTACAAACTA CACTATTTTTTTTAAAGTTTTATCGAAAAATCCCAGTTTTCAAGCTAATTGCACCGTTTTTTGCT TTAAAATTTAAAATTACCAACAAAAAAAAACAGTTTTCATCAGATTTTTGTAAATTTTTAGTTTT TTCCCACTTAAATTCGAATTAAATTCTCATTTAAACAAAATTTGCCAAAAATCGCTATTTTTCGT GATTTTTTTTCTAAAAATTGCTCTTTTCTCTGAAAATTTGAAAAATTACATTGAAAATGTTTTGC AATTTTTTATTTATATACTAAATTAATATAGTTCATACCGGGAGTGGGCGGCGAACGATTTTTCC GGCAAATACGGCAAATAGCCGTTTTTCGAATTTTGGGCAAACCGGCAATTTGCCGAATTTTCAAA AAGGCACAGTTTCAAGTGTTAACCGTCTTATTAAAAATCTTTCTG Right flanking sequence: Indices 18045849 -- 18046348 TTTTTCCGAAAATTAAACTTACCGCCAAATCGGCAATTTTCAAATTTTCGGCAATTGTCGTTTTT CAGTTTTCCGGGAAACCGGCAATTTGCCGATTTGCCTAAAATAAATTTGTTAGAAATAGATATTT TTTTCTAATTTTCGCTGAAGTTTAGCAATTTAGGAAATAATCGTTTCGAAAACTAACTATATATA AAGAAATGCCAATTGGAAAAAAAAAATAAATTTTTAATATTAATACTCATATAATTGATTTTACC AAAAAAAACCCTTAACGGAATAAATACTTTTTACAGCTACTCCTCAAACCTAAAACAATGGGCTA TCAAGTAGTTAATGTTTATACAACTGCATCCTCCGCTGATAATCTATCCCGTCATGAAATGCTCA TGTGGGTAAATGACTGCCTTCAGGCTCATTTTACGAAAATTGAGCAACTTCATACTGGAGCCGGA TATTGCTTGGTAAGGAGAGGGGCATTATACAATGCGCAGAACCAC Found at i:18051692 original size:148 final size:148 Alignment explanation
Indices: 18051519--18051854 Score: 558 Period size: 148 Copynumber: 2.3 Consensus size: 148 18051509 ATTTTTGGCG * * 18051519 ATTTGCCGGAAATTTTCAATTCCGGCCAGTTGCCGATTTGCCAGAAATTATAAATTCCGGCCAGT 1 ATTTGCCGGAAATTTTCAATTCCGGCCAGTTGCCGATTTGCCAGAAATTATAAATTCCGGCAAAT * * 18051584 TGCCGATTTGCCAGAAATTATGAATTCCGGCAAATTTCCATTTTGCCGGAAATTTTCAATTCCGG 66 TGCCAATTTGCCAGAAATTATCAATTCCGGCAAATTTCCATTTTGCCGGAAATTTTCAATTCCGG 18051649 CAAATGCAGGTTTGCCTA 131 CAAATGCAGGTTTGCCTA * 18051667 ATTTGCCGGAAATTTTCAATTCCGGCCAGTTGCCGATTTGCCAGAAATTATGAATTCCGGCAAAT 1 ATTTGCCGGAAATTTTCAATTCCGGCCAGTTGCCGATTTGCCAGAAATTATAAATTCCGGCAAAT * * * * * 18051732 TTCCATTTTGCCGGAAATTTTCTATTCCGGCAAATTTCCATTTTGCCGGAAATTTTCAATTCCGG 66 TGCCAATTTGCCAGAAATTATCAATTCCGGCAAATTTCCATTTTGCCGGAAATTTTCAATTCCGG 18051797 CAAATGCAGGTTTGCCTA 131 CAAATGCAGGTTTGCCTA * * * ** 18051815 ATTTGCCGGAAAATGTTCCATTCCGGCAATCTGCCGATTT 1 ATTTGCCGG-AAATTTTCAATTCCGGCCAGTTGCCGATTT 18051855 TTGGCGATTT Statistics Matches: 172, Mismatches: 15, Indels: 1 0.91 0.08 0.01 Matches are distributed among these distances: 148 147 0.85 149 25 0.15 ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33 Consensus pattern (148 bp): ATTTGCCGGAAATTTTCAATTCCGGCCAGTTGCCGATTTGCCAGAAATTATAAATTCCGGCAAAT TGCCAATTTGCCAGAAATTATCAATTCCGGCAAATTTCCATTTTGCCGGAAATTTTCAATTCCGG CAAATGCAGGTTTGCCTA Left flanking sequence: Indices 18051019 -- 18051518 TGTCGTCTTCGGCAAATTTCCGGTTTCCCCATTTGCCGGAAATGTTAATTTTTGCCAAATTGCCG ATTTGCCGGAATATATAAATTCCGGCGAATTGCTGATTTGATGGGAATTATCAATTTTGGCAATT TGCCGGAAATGTTCATTTTTGGAAAATTGCCCATTTACCGGAAATTTTCATTTTTGGAAAATTTC AGGTTTGCCCAATTGCGGGAAATTATCGATTCCGGCAAATTGCATGTTTGCCCAATTTGCCGAAA ACTTTCAATTCCGGCAAATTGCCGATTTTTCGATTCCGGCACATTTCAGATTTTCCAATATGCCG GATATTTGCAATTCCGGCAATATGCCGATTTTCCGCTTTGCCGGAACTTTCCAATACCGGCAAAT TGCCGATTTTCCGATATGCCGGAAATTTTCAATTCCGGCAAATTGCCGATTTGCCGGAATTTTTC TATTCCGGCAAGTTGCCGATTTTCGGAAAATTTTCATTTTTGGCG Right flanking sequence: Indices 18051855 -- 18052354 TTGGCGATTTGCCGGAAATTTTCTGCAAATCGCATGATGATTGCCTAATTTGCCGGAATAATTCA ATTCCGGCAAAATGCCAAATGCTTGCCACCCACCTCTCTGTTTCATACTAGTTTATTTCGAAAAA AAAATTTTTTTCTGAAATAAAAAAAAATACACTAAATTTTTTGAAAATTGAAATTTTTAATTAAA AAAAACTTTTTTTTTTTCAGAAAACCAGTGACCACAATGAGAACTCCAGCCGCCACCCCGGCTGC TCCACCAACCCGTCCAACTCCATCCCGTTCTTCAGCTGCTCCGAGAGCAACAGCTCCAACTCCAA CAGCAGCACCTCCAAAAACTTGTGCACCGCCCGTTCGTTCTGCATCAACCGTAGCAGCGGCTGCT GCTGCTGCACCACCGGGAGTCGATATGGCGACATTTAATAAATTAAAAGAAGAACTGGAAGAAGT TACACGTCAGCTGACAGAATCTGACAATGTTATTGCAAGTCTGGA Found at i:18060077 original size:148 final size:148 Alignment explanation
Indices: 18059904--18060239 Score: 558 Period size: 148 Copynumber: 2.3 Consensus size: 148 18059894 ATTTTTGGCG * * 18059904 ATTTGCCGGAAATTTTCAATTCCGGCCAGTTGCCGATTTGCCAGAAATTATAAATTCCGGCCAGT 1 ATTTGCCGGAAATTTTCAATTCCGGCCAGTTGCCGATTTGCCAGAAATTATAAATTCCGGCAAAT * * 18059969 TGCCGATTTGCCAGAAATTATGAATTCCGGCAAATTTCCATTTTGCCGGAAATTTTCAATTCCGG 66 TGCCAATTTGCCAGAAATTATCAATTCCGGCAAATTTCCATTTTGCCGGAAATTTTCAATTCCGG 18060034 CAAATGCAGGTTTGCCTA 131 CAAATGCAGGTTTGCCTA * 18060052 ATTTGCCGGAAATTTTCAATTCCGGCCAGTTGCCGATTTGCCAGAAATTATGAATTCCGGCAAAT 1 ATTTGCCGGAAATTTTCAATTCCGGCCAGTTGCCGATTTGCCAGAAATTATAAATTCCGGCAAAT * * * * * 18060117 TTCCATTTTGCCGGAAATTTTCTATTCCGGCAAATTTCCATTTTGCCGGAAATTTTCAATTCCGG 66 TGCCAATTTGCCAGAAATTATCAATTCCGGCAAATTTCCATTTTGCCGGAAATTTTCAATTCCGG 18060182 CAAATGCAGGTTTGCCTA 131 CAAATGCAGGTTTGCCTA * * * ** 18060200 ATTTGCCGGAAAATGTTCCATTCCGGCAATCTGCCGATTT 1 ATTTGCCGG-AAATTTTCAATTCCGGCCAGTTGCCGATTT 18060240 TTGGCGATTT Statistics Matches: 172, Mismatches: 15, Indels: 1 0.91 0.08 0.01 Matches are distributed among these distances: 148 147 0.85 149 25 0.15 ACGTcount: A:0.25, C:0.23, G:0.19, T:0.33 Consensus pattern (148 bp): ATTTGCCGGAAATTTTCAATTCCGGCCAGTTGCCGATTTGCCAGAAATTATAAATTCCGGCAAAT TGCCAATTTGCCAGAAATTATCAATTCCGGCAAATTTCCATTTTGCCGGAAATTTTCAATTCCGG CAAATGCAGGTTTGCCTA Left flanking sequence: Indices 18059404 -- 18059903 TGTCGTCTTCGGCAAATTTCCGGTTTCCCCATTTGCCGGAAATGTTAATTTTTGCCAAATTGCCG ATTTGCCGGAATATATAAATTCCGGCGAATTGCTGATTTGATGGGAATTATCAATTTTGGCAATT TGCCGGAAATGTTCATTTTTGGAAAATTGCCCATTTACCGGAAATTTTCATTTTTGGAAAATTTC AGGTTTGCCCAATTGCGGGAAATTATCGATTCCGGCAAATTGCATGTTTGCCCAATTTGCCGAAA ACTTTCAATTCCGGCAAATTGCCGATTTTTCGATTCCGGCACATTTCAGATTTTCCAATATGCCG GATATTTGCAATTCCGGCAATATGCCGATTTTCCGCTTTGCCGGAACTTTCCAATACCGGCAAAT TGCCGATTTTCCGATATGCCGGAAATTTTCAATTCCGGCAAATTGCCGATTTGCCGGAATTTTTC TATTCCGGCAAGTTGCCGATTTTCGGAAAATTTTCATTTTTGGCG Right flanking sequence: Indices 18060240 -- 18060739 TTGGCGATTTGCCGGAAATTTTCTGCAAATCGCATGATGATTGCCTAATTTGCCGGAATAATTCA ATTCCGGCAAAATGCCAAATGCTTGCCACCCACCTCTCTGTTTCATACTAGTTTATTTCGAAAAA AAAATTTTTTTCTGAAATAAAAAAAAATACACTAAATTTTTTGAAAATTGAAATTTTTAATTAAA AAAAACTTTTTTTTTTTCAGAAAACCAGTGACCACAATGAGAACTCCAGCCGCCACCCCGGCTGC TCCACCAACCCGTCCAACTCCATCCCGTTCTTCAGCTGCTCCGAGAGCAACAGCTCCAACTCCAA CAGCAGCACCTCCAAAAACTTGTGCACCGCCCGTTCGTTCTGCATCAACCGTAGCAGCGGCTGCT GCTGCTGCACCACCGGGAGTCGATATGGCGACATTTAATAAATTAAAAGAAGAACTGGAAGAAGT TACACGTCAGCTGACAGAATCTGACAATGTTATTGCAAGTCTGGA Found at i:18172199 original size:125 final size:124 Alignment explanation
Indices: 18171956--18173891 Score: 3053 Period size: 125 Copynumber: 15.5 Consensus size: 124 18171946 TTTCTGTGGA * 18171956 AAATTACAAA-TTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGGAA 1 AAATT-CAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTAGCGGGAA * ** * 18172020 ATTCAAATTTTCAGTCAATTTTTTAGCGGGAAATTTAAATTTTCAGTCAATTTTTATCTGG 65 ATTCAAATTTTCAGTCAA-TTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGG * ** * * * 18172081 AACTTCAAATTTTCAGTCAATTTTTATCTGGAAGTTCAAATTTTCAGTCAATTTTTGGCGGGAAA 1 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTAGCGGGAAA * * 18172146 TTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTTAGCGGG 66 TTCAAATTTTCAGTCAATTTTTAGCGGGAAATTCAAATTTTCAGTCAA-TTTTTGGCGGG * ** * * * 18172206 AAATTTAAATTTTCAGTCAATTTTTATCTGGAAGTTCAAATTTTCAGTCAATTTTTGGCGGGAAA 1 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTAGCGGGAAA * * 18172271 TTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTTAGCGGG 66 TTCAAATTTTCAGTCAATTTTTAGCGGGAAATTCAAATTTTCAGTCAA-TTTTTGGCGGG * ** * * * 18172331 AAATTTAAATTTTCAGTCAATTTTTATCTGGAAGTTCAAATTTTCAGTCAATTTTTGGCGGGAAA 1 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTAGCGGGAAA * * 18172396 TTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTTAGCGGG 66 TTCAAATTTTCAGTCAATTTTTAGCGGGAAATTCAAATTTTCAGTCAA-TTTTTGGCGGG ** * * * * 18172456 AAATTTGAATTTTCAGTCAATTTTTTAGCGGGAAATTTAAATTTTCAGTCAATTTTTATCTGGAA 1 AAATTCAAATTTTCAGTCAA-TTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTAGCGGGAA * * 18172521 GTTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGG 65 ATTCAAATTTTCAGTCAATTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGG * * * 18172581 AAATTCAAATTTTCAGTCAATTTTTTAGCGGGAAATTTAAATTTTCAGTCAATTTTTGGCGGGAA 1 AAATTCAAATTTTCAGTCAA-TTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTAGCGGGAA * * * 18172646 ATTCAAATTTTCAGTCAATTTTTATCTGGAACTTCAAATTTTCAGTCAATTTTTGGCGGG 65 ATTCAAATTTTCAGTCAATTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGG * * * 18172706 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTATCTGGAAG 1 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTAGCGGGAAA * 18172771 TTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGG 66 TTCAAATTTTCAGTCAATTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGG ** * * * * * 18172830 AAATTCAAATTTTCAGTCAATTTTTATCTGGAACTTCAAATTTTCAGTCAATTTTTATCTGGAAG 1 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTAGCGGGAAA * 18172895 TTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGG 66 TTCAAATTTTCAGTCAATTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGG * * * * 18172954 AAATTCAAATTTTCAGTCAATTTTTTAGCGGGAAATTTAAATTTTCAGTCAATTTTTATCTGGAA 1 AAATTCAAATTTTCAGTCAA-TTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTAGCGGGAA * * 18173019 GTTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGG 65 ATTCAAATTTTCAGTCAATTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGG 18173079 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTTAGCGGGAA 1 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAA-TTTTTAGCGGGAA * * * * 18173144 ATTTAAATTTTCAGTCAATTTTTATCTGGAAGTTCAAATTTTCAGTCAATTTTTGGCGGG 65 ATTCAAATTTTCAGTCAATTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGG 18173204 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTTAGCGGGAA 1 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAA-TTTTTAGCGGGAA * * * * 18173269 ATTTAAATTTTCAGTCAATTTTTATCTGGAAGTTCAAATTTTCAGTCAATTTTTGGCGGG 65 ATTCAAATTTTCAGTCAATTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGG 18173329 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTTAGCGGGAA 1 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAA-TTTTTAGCGGGAA ** * * * ** * 18173394 ATTTGAATTTTCAGTCAATTTTTATCTGGAACTTCAAATTTTCAGTCAATTTTTATCTGG 65 ATTCAAATTTTCAGTCAATTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGG * 18173454 AAGTTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTTAGCGGGAA 1 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAA-TTTTTAGCGGGAA ** * * * 18173519 ATTTGAATTTTCAGTCAATTTTTATCTGGAACTTCAAATTTTCAGTCAATTTTTGGCGGG 65 ATTCAAATTTTCAGTCAATTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGG 18173579 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTTAGCGGGAA 1 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAA-TTTTTAGCGGGAA ** * * * 18173644 ATTTGAATTTTCAGTCAATTTTTATCTGGAACTTCAAATTTTCAGTCAATTTTTGGCGGG 65 ATTCAAATTTTCAGTCAATTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGG 18173704 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTTAGCGGGAA 1 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAA-TTTTTAGCGGGAA ** * * * 18173769 ATTTGAATTTTCAGTCAATTTTTATCTGGAACTTCAAATTTTCAGTCAATTTTTGGCGGG 65 ATTCAAATTTTCAGTCAATTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGG * * ** * 18173829 AAATTCAAATTTTCAGTCAATTTTTGGCGGAAAATTCAAAATTTTTGTCAATTTTTGGCGGGA 1 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTAGCGGGA 18173892 GTATCAACGC Statistics Matches: 1732, Mismatches: 74, Indels: 11 0.95 0.04 0.01 Matches are distributed among these distances: 124 307 0.18 125 1340 0.77 126 85 0.05 ACGTcount: A:0.29, C:0.12, G:0.17, T:0.42 Consensus pattern (124 bp): AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTAGCGGGAAA TTCAAATTTTCAGTCAATTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGG Left flanking sequence: Indices 18171456 -- 18171955 GCCCCATTTTGGCAAGAAATTCAAACTTCGGCCAATTTTTTTTAGCTGGAAATCAAACGGTCACG GTCAAATTTTTTTACGAATTTTGTAACAAAAAAAAGCCGGAAAACAAACAAATAATTTAGTCACA ACTTTTTGGACGCTAAACAATAAATCAATCAATCGGAAAACCCAATAATTTTATTCATTTTGACG AGAGTTCAATTTAAAGCGGGAAAATGCGAATTCCGTACGTGTTGAGATAAATAAGAACAAAGAAA CACAGACAAATAACCCAAATGCCGATCATTGTCCAGAAGAAAATTTTCACGTTTTTCTGGAAAGA TTTTAATTTTACTTGATAAAAATTTCTGGAATTTCTATTAAAAACTGCTTTTTTCTTAAAATTTT CGAGAAAAAATTCTAAAATGGCGGGGGTGTAATACACAAGTACCCAATATTTTCTTTATACCTTT ACCGCCCATGCTTGTGAGCAAACCGTTGGGCTGCTTTTCTGTGGA Right flanking sequence: Indices 18173892 -- 18174391 GTATCAACGCAAAAAAACTCACGATCTTGTTCTTCAACTTTTTGATTTTTGCCTTATTGCCTCTT GGCTTCTTGAGCGATGGATTCGATTCGGGCAACTTCTGAACTCCATCACCACTTGTCACTTTTGC TCCATTATCCGAAATAAGTGCGTCTTGAGCAACTGTCAGCGGTGGTGGTGGTGGTGGTGGTTCGT TTCCTCCGACTGCCGGCGCATTTGGATCCAGAATCGCTAGATTTTGATACTCATTGCCGTCGGAT TTCAATAAATTATTTGTTGGATCAAAGAATGGATCACCCATTGTTTTCAGAATGTGAGAATTCCT AGTTTTTGATTTGCCACCAAACTTTTTTGAAATTGAAATGAATAGAATTTTGAAGAAGGAGAAGG AAAAAGGATGGGGGAGAGTTTGGATTTTTTGAAAGTTCACGTATTTTCAAAATGAGAACAACAAG ATTTGGGTACTTGTGTATTATATCTTCGCCATTTTAGAAATTAAT Found at i:18172250 original size:156 final size:155 Alignment explanation
Indices: 18171956--18173891 Score: 3088 Period size: 156 Copynumber: 12.4 Consensus size: 155 18171946 TTTCTGTGGA 18171956 AAATTACAAA-TTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGGAA 1 AAATT-CAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGGAA * * * * 18172020 ATTCAAATTTTCAGTCAATTTTTTAGCGGGAAATTTAAATTTTCAGTCAATTTTTATCTGGAACT 65 ATTCAAATTTTCAGTCAA-TTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTAGCGGGAAAT ** * 18172085 TCAAATTTTCAGTCAATTTTTATCTGG 129 TCAAATTTTCAGTCAATTTTTGGCGGG * 18172112 AAGTTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGGAAA 1 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGGAAA * * * * 18172177 TTCAAATTTTCAGTCAATTTTTTAGCGGGAAATTTAAATTTTCAGTCAATTTTTATCTGGAAGTT 66 TTCAAATTTTCAGTCAA-TTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTAGCGGGAAATT 18172242 CAAATTTTCAGTCAATTTTTGGCGGG 130 CAAATTTTCAGTCAATTTTTGGCGGG * 18172268 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTTAGCGGGAA 1 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAA-TTTTTGGCGGGAA * * * * * 18172333 ATTTAAATTTTCAGTCAATTTTTATCTGGAAGTTCAAATTTTCAGTCAATTTTTGGCGGGAAATT 65 ATTCAAATTTTCAGTCAATTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTAGCGGGAAATT 18172398 CAAATTTTCAGTCAATTTTTGGCGGG 130 CAAATTTTCAGTCAATTTTTGGCGGG * ** * 18172424 AAATTCAAATTTTCAGTCAATTTTTTAGCGGGAAATTTGAATTTTCAGTCAATTTTTTAGCGGGA 1 AAATTCAAATTTTCAGTCAA-TTTTTGGCGGGAAATTCAAATTTTCAGTCAA-TTTTTGGCGGGA * * * * * 18172489 AATTTAAATTTTCAGTCAATTTTTATCTGGAAGTTCAAATTTTCAGTCAATTTTTGGCGGGAAAT 64 AATTCAAATTTTCAGTCAATTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTAGCGGGAAAT 18172554 TCAAATTTTCAGTCAATTTTTGGCGGG 129 TCAAATTTTCAGTCAATTTTTGGCGGG * * 18172581 AAATTCAAATTTTCAGTCAATTTTTTAGCGGGAAATTTAAATTTTCAGTCAATTTTTGGCGGGAA 1 AAATTCAAATTTTCAGTCAA-TTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGGAA * * * * 18172646 ATTCAAATTTTCAGTCAATTTTTATCTGGAACTTCAAATTTTCAGTCAATTTTTGGCGGGAAATT 65 ATTCAAATTTTCAGTCAATTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTAGCGGGAAATT 18172711 CAAATTTTCAGTCAATTTTTGGCGGG 130 CAAATTTTCAGTCAATTTTTGGCGGG ** * * 18172737 AAATTCAAATTTTCAGTCAATTTTTATCTGGAAGTTCAAATTTTCAGTCAATTTTTGGCGGGAAA 1 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGGAAA * * * * 18172802 TTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTATCTGGAACTTC 66 TTCAAATTTTCAGTCAATTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTAGCGGGAAATTC ** * 18172867 AAATTTTCAGTCAATTTTTATCTGG 131 AAATTTTCAGTCAATTTTTGGCGGG * 18172892 AAGTTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGGAAA 1 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGGAAA * * * * 18172957 TTCAAATTTTCAGTCAATTTTTTAGCGGGAAATTTAAATTTTCAGTCAATTTTTATCTGGAAGTT 66 TTCAAATTTTCAGTCAA-TTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTAGCGGGAAATT 18173022 CAAATTTTCAGTCAATTTTTGGCGGG 130 CAAATTTTCAGTCAATTTTTGGCGGG 18173048 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGGAAA 1 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGGAAA * * * * 18173113 TTCAAATTTTCAGTCAATTTTTTAGCGGGAAATTTAAATTTTCAGTCAATTTTTATCTGGAAGTT 66 TTCAAATTTTCAGTCAA-TTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTAGCGGGAAATT 18173178 CAAATTTTCAGTCAATTTTTGGCGGG 130 CAAATTTTCAGTCAATTTTTGGCGGG * 18173204 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTTAGCGGGAA 1 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAA-TTTTTGGCGGGAA * * * * * 18173269 ATTTAAATTTTCAGTCAATTTTTATCTGGAAGTTCAAATTTTCAGTCAATTTTTGGCGGGAAATT 65 ATTCAAATTTTCAGTCAATTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTAGCGGGAAATT 18173334 CAAATTTTCAGTCAATTTTTGGCGGG 130 CAAATTTTCAGTCAATTTTTGGCGGG * ** ** * 18173360 AAATTCAAATTTTCAGTCAATTTTTTAGCGGGAAATTTGAATTTTCAGTCAATTTTTATCTGGAA 1 AAATTCAAATTTTCAGTCAA-TTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGGAA * * * * * 18173425 CTTCAAATTTTCAGTCAATTTTTATCTGGAAGTTCAAATTTTCAGTCAATTTTTGGCGGGAAATT 65 ATTCAAATTTTCAGTCAATTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTAGCGGGAAATT * 18173490 CAAATTTTCAGTCAATTTTTTAGCGGG 130 CAAATTTTCAGTCAA-TTTTTGGCGGG ** ** * * 18173517 AAATTTGAATTTTCAGTCAATTTTTATCTGGAACTTCAAATTTTCAGTCAATTTTTGGCGGGAAA 1 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGGAAA * 18173582 TTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTTAGCGGGAAATT 66 TTCAAATTTTCAGTCAATTTTTAGCGGGAAATTCAAATTTTCAGTCAA-TTTTTAGCGGGAAATT ** ** * 18173647 TGAATTTTCAGTCAATTTTTATCTGG 130 CAAATTTTCAGTCAATTTTTGGCGGG * 18173673 AACTTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGGAAA 1 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGGAAA ** * * * 18173738 TTCAAATTTTCAGTCAATTTTTTAGCGGGAAATTTGAATTTTCAGTCAATTTTTATCTGGAACTT 66 TTCAAATTTTCAGTCAA-TTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTAGCGGGAAATT 18173803 CAAATTTTCAGTCAATTTTTGGCGGG 130 CAAATTTTCAGTCAATTTTTGGCGGG * * ** 18173829 AAATTCAAATTTTCAGTCAATTTTTGGCGGAAAATTCAAAATTTTTGTCAATTTTTGGCGGGA 1 AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGGA 18173892 GTATCAACGC Statistics Matches: 1660, Mismatches: 111, Indels: 18 0.93 0.06 0.01 Matches are distributed among these distances: 155 201 0.12 156 1105 0.67 157 354 0.21 ACGTcount: A:0.29, C:0.12, G:0.17, T:0.42 Consensus pattern (155 bp): AAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGGAAA TTCAAATTTTCAGTCAATTTTTAGCGGGAAATTCAAATTTTCAGTCAATTTTTAGCGGGAAATTC AAATTTTCAGTCAATTTTTGGCGGG Left flanking sequence: Indices 18171456 -- 18171955 GCCCCATTTTGGCAAGAAATTCAAACTTCGGCCAATTTTTTTTAGCTGGAAATCAAACGGTCACG GTCAAATTTTTTTACGAATTTTGTAACAAAAAAAAGCCGGAAAACAAACAAATAATTTAGTCACA ACTTTTTGGACGCTAAACAATAAATCAATCAATCGGAAAACCCAATAATTTTATTCATTTTGACG AGAGTTCAATTTAAAGCGGGAAAATGCGAATTCCGTACGTGTTGAGATAAATAAGAACAAAGAAA CACAGACAAATAACCCAAATGCCGATCATTGTCCAGAAGAAAATTTTCACGTTTTTCTGGAAAGA TTTTAATTTTACTTGATAAAAATTTCTGGAATTTCTATTAAAAACTGCTTTTTTCTTAAAATTTT CGAGAAAAAATTCTAAAATGGCGGGGGTGTAATACACAAGTACCCAATATTTTCTTTATACCTTT ACCGCCCATGCTTGTGAGCAAACCGTTGGGCTGCTTTTCTGTGGA Right flanking sequence: Indices 18173892 -- 18174391 GTATCAACGCAAAAAAACTCACGATCTTGTTCTTCAACTTTTTGATTTTTGCCTTATTGCCTCTT GGCTTCTTGAGCGATGGATTCGATTCGGGCAACTTCTGAACTCCATCACCACTTGTCACTTTTGC TCCATTATCCGAAATAAGTGCGTCTTGAGCAACTGTCAGCGGTGGTGGTGGTGGTGGTGGTTCGT TTCCTCCGACTGCCGGCGCATTTGGATCCAGAATCGCTAGATTTTGATACTCATTGCCGTCGGAT TTCAATAAATTATTTGTTGGATCAAAGAATGGATCACCCATTGTTTTCAGAATGTGAGAATTCCT AGTTTTTGATTTGCCACCAAACTTTTTTGAAATTGAAATGAATAGAATTTTGAAGAAGGAGAAGG AAAAAGGATGGGGGAGAGTTTGGATTTTTTGAAAGTTCACGTATTTTCAAAATGAGAACAACAAG ATTTGGGTACTTGTGTATTATATCTTCGCCATTTTAGAAATTAAT Found at i:18385946 original size:165 final size:167 Alignment explanation
Indices: 18385766--18386135 Score: 684 Period size: 166 Copynumber: 2.2 Consensus size: 167 18385756 GAATAATTGC * 18385766 ACTAAAAAAAAAATTAGAAACCCATTTTCATAGAAATTCTCCCAAAACTCCAAA-TTTTTTTTTG 1 ACTAAAAAAAAAATTAGAAACCCATTTTTATAGAAATTCTCCCAAAACTCCAAATTTTTTTTTTG * 18385830 CAAAAAAGTGCAGTCATATGTATGTAAAAAAATGAATTGAAGACCAAAACGCCTGTAGCGCGGCC 66 CAAAAAAGTGCAGTCATATGTATGTAAAAAAATCAATTGAAGACCAAAACGCCTGTAGCGCGGCC * 18385895 AAAATCGAATTTCTTGACCCAGAAACGTATCCTTAAT 131 AAAATCGAATTTCTTGACCCAGAAACGTACCCTTAAT * * 18385932 ACT-AAAAAAAAATTAAAAACCCATTTTTATAGAAATTCTCCCAAAATTCCAAATTTTTTTTTTG 1 ACTAAAAAAAAAATTAGAAACCCATTTTTATAGAAATTCTCCCAAAACTCCAAATTTTTTTTTTG 18385996 CAAAAAAGTGCAGTCATATGTATGTAAAAAAATCAATTGAAGACCAAAACGCCTGTAGCGCGGCC 66 CAAAAAAGTGCAGTCATATGTATGTAAAAAAATCAATTGAAGACCAAAACGCCTGTAGCGCGGCC 18386061 AAAATCGAATTTCTTGACCCAGAAACGTACCCTTAAT 131 AAAATCGAATTTCTTGACCCAGAAACGTACCCTTAAT * 18386098 ATTAAAAAAAAAATTAGAAACCCATTTTTATAGAAATT 1 ACTAAAAAAAAAATTAGAAACCCATTTTTATAGAAATT 18386136 GTCATATTAT Statistics Matches: 195, Mismatches: 7, Indels: 3 0.95 0.03 0.01 Matches are distributed among these distances: 165 47 0.24 166 115 0.59 167 33 0.17 ACGTcount: A:0.43, C:0.18, G:0.11, T:0.28 Consensus pattern (167 bp): ACTAAAAAAAAAATTAGAAACCCATTTTTATAGAAATTCTCCCAAAACTCCAAATTTTTTTTTTG CAAAAAAGTGCAGTCATATGTATGTAAAAAAATCAATTGAAGACCAAAACGCCTGTAGCGCGGCC AAAATCGAATTTCTTGACCCAGAAACGTACCCTTAAT Left flanking sequence: Indices 18385266 -- 18385765 TTTTGAAGAGGATTTAGGTGGGTAGTAGTGTCATCGTCGGGGAAGTAGCTCTGAAATTGAAAAAT AATTGGTTTTTTGAAAAGATTGTGCAATTTTTCGGGCTTCAGATTTATCTAAATTTGGAAAATTG GTTTAAAAAAAATTTCAGGGCCTAGAAATAATTTTTTGAAAATTTCAAAAAAGTTCTAACAGTAC TGAGTCTTTTTTAAAGTTGTTCAGAATTTTAGGGAATTTTTTTTCTGAATTTTTCAAAACTTTGA AAATTTTTTAAAAATAAGTTGTTCCAATTTCCAACTTTTTTACCAGTTTTTTGTTTTGGAATTTT CCGGTTTTTTTCAATTTTTTATTATTTTTAAATAAATATTTAAAAACTGAAAATTTTTTACATAT AGTGATCCCTAAAAAATACAGAAATTTTCAGAGTTTTGGGGTTTTTTGCACTTTAAATTTTCTCT AAAACTTACAGTTTCCAAAATTGTCCTACTTTTGAGAATAATTGC Right flanking sequence: Indices 18386136 -- 18386635 GTCATATTATTATTATTATTATTATTGAATACGTTTATTTGAACGTAAAATTAAGAGAAAAAAAG AGGGAAAAATATAAAATATGATGAATATTATGGGATAATACAGAAAAAGTGGGAACGGGTTGAGG CCTTGTTACATAACCTTATCATTTCTTAATGTGTCTAAAAATGGGATAAAGTTTGTGTCTGATGA ACAAAAGTTAAGAATGATTGCCTTTTGCAGGGTTTACTATAGCACTGAGAACACGATGAGTGAAA AAATGAGTTCGAAGTTTGCTTTTGGGAGTTTTCCACCTATAAGCGTGGCTGTTCCTCGTTCTTTC AGAAGGTTTGAACTCAAAAAACTGTGAGTGGTCTATATTGATTTTGCCCGCTATTAGTTTCCTAA TGAACTTTACATCTAAAAGCTTTCTTCTACAGTGCGTGCAACTTCTATAGAACCCCCTAAATTTT CGAGTTTCAGCATGTTCTGATATTTTTCATGAAATTTTGTTAATG Found at i:18439723 original size:182 final size:182 Alignment explanation
Indices: 18439410--18439835 Score: 726 Period size: 182 Copynumber: 2.3 Consensus size: 182 18439400 GTCACTGGCA * 18439410 GTGTTTACATCATCTGCGTCAGGAAGCTTCTGCTGAAGGACTACGACCGTCGGGCTGCCGCTGAT 1 GTGTCTACATCATCTGCGTCAGGAAGCTTCTGCTGAAGGACTACGACCGTCGGGCTGCCGCTGAT * * 18439475 GTTTGGATTCCTATTGTCCTCAACTTCGCGGAAATCGATTTTATCGAGCCACTGTGCCCAAAGAA 66 GTTTGGATTCCTATTGTCCTAAACTTCGCGGAAATCGATTTTATCGAACCACTGTGCCCAAAGAA 18439540 CGTTTTCTGCGAAAAGGACAAAGGAGTCACGCCGTCACTGCCATAACTGGTC 131 CGTTTTCTGCGAAAAGGACAAAGGAGTCACGCCGTCACTGCCATAACTGGTC * 18439592 GTGTCTACATCATCTACGTCAGGAAGCTTCTGCTGAAGGACTACGACCGTCGGGCTGCCGCTGAT 1 GTGTCTACATCATCTGCGTCAGGAAGCTTCTGCTGAAGGACTACGACCGTCGGGCTGCCGCTGAT * ** * * 18439657 GTTTGGATTCCTCTTGTCCTAAACTTCTTGGAAATCGATTTTATCGGACCACTGTGCCCGAAGAA 66 GTTTGGATTCCTATTGTCCTAAACTTCGCGGAAATCGATTTTATCGAACCACTGTGCCCAAAGAA * * * * * 18439722 CGTTTTCTGTGAATAGGACAGAGGAGTCACGCTGTCACTGCCATCACTGGTC 131 CGTTTTCTGCGAAAAGGACAAAGGAGTCACGCCGTCACTGCCATAACTGGTC * ** * 18439774 GTGTCTACATCATCTGCGTCAGGAAGCTACTGCTGAAGGACCGCGACCGTCGGACTGCCGCT 1 GTGTCTACATCATCTGCGTCAGGAAGCTTCTGCTGAAGGACTACGACCGTCGGGCTGCCGCT 18439836 TGGACTGCTG Statistics Matches: 225, Mismatches: 19, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 182 225 1.00 ACGTcount: A:0.22, C:0.26, G:0.25, T:0.27 Consensus pattern (182 bp): GTGTCTACATCATCTGCGTCAGGAAGCTTCTGCTGAAGGACTACGACCGTCGGGCTGCCGCTGAT GTTTGGATTCCTATTGTCCTAAACTTCGCGGAAATCGATTTTATCGAACCACTGTGCCCAAAGAA CGTTTTCTGCGAAAAGGACAAAGGAGTCACGCCGTCACTGCCATAACTGGTC Left flanking sequence: Indices 18438910 -- 18439409 CAACTGTGTTCTCTTATTCACATCGCTTATCTCTTCTTCCTCGATGGCACTCCGCAACCGCCAGT ATCTCTCTAGACGCTTAATGTATTTGACGTCAGAGGTGTTTCCCCAACGCACTAATCTGAGCTGT CAACATGATGCATCGACCGGTTTCGAAGCTTTGCTTCGAAATTGGAAACGAATGAACCTGTTGGG AAGAGAGAACTGGTTGCCACGAGCGAAGTTAGAGAAGGCAGGTGGATAAACCACCTTTTGTTGAC CCGAACTACCTTAGCTCGGAGATTACTCCGTCTTTCCCTGGCTAGACACCCCCGGAGCTCACTGA CAGCCCCGGAGCACCATTTCGGTTCTCCGGAGGACGGTCGGAAACCCCCGGAGTGGGACAGTCGT CAGGAGAAGGATGGAGCAACCCAGAAAACATCTAAATTACGTAGAGACCTCAATTTCTCTACTCG TCTTCTACCATCGATCTATGGAGGATTTTCGGGACGTCACTGGCA Right flanking sequence: Indices 18439836 -- 18440335 TGGACTGCTGCAAATGCTGAAAGAAGCTGATGTTTGGATCCCTCTTGCCCTAAATCGTCATGGAA ATCGGGTTTTATCGGGCCACTGTGCCCGAGGAACGTTTTCTGTGAGAAGGACAAAGGAGTCACGC CGTCACTGCCGCCGACACGAATCTCCATCCGAAGATCGAGGAGAATGTGGAAAAATTGTCGTTAG CGAGGAAATTGCACTGTCAATTTCCCCTAATGATCAATACAAATTCGTTTCTGGAATTTGTGGCG CCAAAGGTGACTCAACGACAACATCCGCGTCGAAAACGCACTTTTAGAGACGTTACAATCAACAA ATGTCGGTTGAGCGTCCAGAAGTGGCGATCGATACGGATGTTACGAGAAAACCAGACAGCGACCT CAAATTACCAGTAAACGAGTAGAACACCACCTAAAAATTGATCGAAACTGAGAAAATTGCTCTAG CATTTTCCGTTCGACGATTTCCCCACTAAAAAACTCTAAATTACA Found at i:18515819 original size:301 final size:301 Alignment explanation
Indices: 18515399--18517130 Score: 3078 Period size: 301 Copynumber: 5.8 Consensus size: 301 18515389 ATTTCCCGGG * ** 18515399 ATTTGACACCCATATTGGCTATATTTCGAAAAAGTTAAATTTCAGGCTGGAATGGGCCGTTTTGG 1 ATTTGACACCCATATTGGCTATAATCTGAAAAA-TTAAATTTCAGGCTGGAATGGGCCGTTTTGG * * 18515464 GCCGGTTGTAGGCCCGAATCTTCATGTTTTCTGAATACGCTGCACTTAACATTATTAAGCAAAAA 65 GCCGGTTGTAGGCCCGAATGTCCATGTTTTCTGAATACGCTGCACTTAACATTATTAAGCAAAAA * 18515529 CTGAGCGTAGAATGTCCGTTAATTAGAACCCCCAATTGGCTAAATTCTGAAAAAGTTACATTTCA 130 CTGAGCGTAGAATGTCCGTTAATTAGAACCCCAAATTGGCTAAATTCTGAAAAAGTTACATTTCA 18515594 GGCTTGAATAGCCCGTTTCAGGCCGGGTTCAGGCCCGAAACTTAGTGGTTTCACGATATGCGGCA 195 GGCTTGAATAGCCCGTTTCAGGCCGGGTTCAGGCCCGAAACTTAGTGGTTTCACGATATGCGGCA 18515659 CTTTTCATGCCAAACATCGAGTTTTTCGTGAAATTTCCTAAA 260 CTTTTCATGCCAAACATCGAGTTTTTCGTGAAATTTCCTAAA 18515701 ATTTGACACCCATATTGGCTATAATCTGAAAAATTAAATTTCAGGCTGGAATGGGCCGTTTTGGG 1 ATTTGACACCCATATTGGCTATAATCTGAAAAATTAAATTTCAGGCTGGAATGGGCCGTTTTGGG * 18515766 CCGGTTGTAGGCCCGAATGTCCATGTTTTCTGAATACGCTGCACTTCACATTATTAAGCAAAAAC 66 CCGGTTGTAGGCCCGAATGTCCATGTTTTCTGAATACGCTGCACTTAACATTATTAAGCAAAAAC 18515831 TGAGCGTAGAATGTCCGTTAATTAGAACCCCAAATTGGCTAAATTCTGAAAAAGTTACATTTCAG 131 TGAGCGTAGAATGTCCGTTAATTAGAACCCCAAATTGGCTAAATTCTGAAAAAGTTACATTTCAG 18515896 GCTTGAATAGCCCGTTTCAGGCCGGGTTCAGGCCCGAAACTTAGTGGTTTCACGATATGCGGCAC 196 GCTTGAATAGCCCGTTTCAGGCCGGGTTCAGGCCCGAAACTTAGTGGTTTCACGATATGCGGCAC * 18515961 TTTTCATGCCAAACATCGAGTTTTTCGTAAAATTTCCTAAA 261 TTTTCATGCCAAACATCGAGTTTTTCGTGAAATTTCCTAAA 18516002 ATTTGACACCCATATTGGCTATAATCTGAAAAATTAAATTTCAGGCTGGAATGGGCCGTTTTGGG 1 ATTTGACACCCATATTGGCTATAATCTGAAAAATTAAATTTCAGGCTGGAATGGGCCGTTTTGGG 18516067 CCGGTTGTAGGCCCGAATGTCCATGTTTTCTGAATACGCTGCACTTAACATTATTAAGCAAAAAC 66 CCGGTTGTAGGCCCGAATGTCCATGTTTTCTGAATACGCTGCACTTAACATTATTAAGCAAAAAC 18516132 TGAGCGTAGAATGTCCGTTAATTAGAACCCCAAATTGGCTAAATTCTGAAAAAGTTACATTTCAG 131 TGAGCGTAGAATGTCCGTTAATTAGAACCCCAAATTGGCTAAATTCTGAAAAAGTTACATTTCAG 18516197 GCTTGAATAGCCCGTTTCAGGCCGGGTTCAGGCCCGAAACTTAGTGGTTTCACGATATGCGGCAC 196 GCTTGAATAGCCCGTTTCAGGCCGGGTTCAGGCCCGAAACTTAGTGGTTTCACGATATGCGGCAC * 18516262 TTTTCATGCCAAACATCGAGTTTTTCGTAAAATTTCCTAAA 261 TTTTCATGCCAAACATCGAGTTTTTCGTGAAATTTCCTAAA 18516303 ATTTGACACCCATATTGGCTATAATCTGAAAAATTAAATTTCAGGCTGGAATGGGCCGTTTTGGG 1 ATTTGACACCCATATTGGCTATAATCTGAAAAATTAAATTTCAGGCTGGAATGGGCCGTTTTGGG 18516368 CCGGTTGTAGGCCCGAATGTCCATGTTTTCTGAATACGCTGCACTTAACATTATTAAGCAAAAAC 66 CCGGTTGTAGGCCCGAATGTCCATGTTTTCTGAATACGCTGCACTTAACATTATTAAGCAAAAAC 18516433 TGAGCGTAGAATGTCCGTTAATTAGAACCCCAAATTGGCTAAATTCTGAAAAAGTTACATTTCAG 131 TGAGCGTAGAATGTCCGTTAATTAGAACCCCAAATTGGCTAAATTCTGAAAAAGTTACATTTCAG 18516498 GCTTGAATAGCCCGTTTCAGGCCGGGTTCAGGCCCGAAACTTAGTGGTTTCACGATATGCGGCAC 196 GCTTGAATAGCCCGTTTCAGGCCGGGTTCAGGCCCGAAACTTAGTGGTTTCACGATATGCGGCAC * 18516563 TTTTCATGCCAAACATCGAGTTCTTCGTGAAATTTCCTAAA 261 TTTTCATGCCAAACATCGAGTTTTTCGTGAAATTTCCTAAA 18516604 ATTTGACACCCATATTGGCTATAATCTGAAAAATTAAATTTCAGGCTGGAATGGGCCGTTTTGGG 1 ATTTGACACCCATATTGGCTATAATCTGAAAAATTAAATTTCAGGCTGGAATGGGCCGTTTTGGG 18516669 CCGGTTGTAGGCCCGAATGTCCATGTTTTCTGAATACGCTGCACTTAACATTATTAAGCAAAAAC 66 CCGGTTGTAGGCCCGAATGTCCATGTTTTCTGAATACGCTGCACTTAACATTATTAAGCAAAAAC 18516734 TGAGCGTAGAATGTCCGTTAATTAGAACCCCAAATTGGCTAAATTCTGAAAAAGTTACATTTCAG 131 TGAGCGTAGAATGTCCGTTAATTAGAACCCCAAATTGGCTAAATTCTGAAAAAGTTACATTTCAG 18516799 GCTTGAATAGCCCGTTTCAGGCCGGGTTCAGGCCCGAAACTTAGTGGTTTCACGATATGCGGCAC 196 GCTTGAATAGCCCGTTTCAGGCCGGGTTCAGGCCCGAAACTTAGTGGTTTCACGATATGCGGCAC * 18516864 TTTTCATGCCAAACATCGAGTTCTTCGTGAAATTTCCTAAA 261 TTTTCATGCCAAACATCGAGTTTTTCGTGAAATTTCCTAAA * ** 18516905 ATTTGACACCCATATTGGCTATAATCTGAAAAATTAAATTTCAGGCTGGAATAGGCCGTTTCAGG 1 ATTTGACACCCATATTGGCTATAATCTGAAAAATTAAATTTCAGGCTGGAATGGGCCGTTTTGGG * *** * * * ** ** * 18516970 CCGGTTTTAGGCCCGATACTCCATATTTTCTGAATATGCAGCACTTGTCATGTTTAAACTTTAAA 66 CCGGTTGTAGGCCCGAATGTCCATGTTTTCTGAATACGCTGCACTTAACATTATTAAGC---AAA * * * * * * * ** * *** * 18517035 AAATGGGCGTAGAATGT-C---AATTTGAGCCACATATTGACT-AATTTGGAGAAATGCAAATTT 128 AACTGAGCGTAGAATGTCCGTTAATTAGAACCCCAAATTGGCTAAATTCTGAAAAAGTTACATTT * * ** * 18517095 TAAGCTGAAATAGGCCGTTTCAGGCCGGGTTCAGGC 193 CAGGCTTGAATAGCCCGTTTCAGGCCGGGTTCAGGC 18517131 TATTTTCAAA Statistics Matches: 1382, Mismatches: 45, Indels: 9 0.96 0.03 0.01 Matches are distributed among these distances: 299 45 0.03 300 16 0.01 301 1272 0.92 302 30 0.02 303 1 0.00 304 18 0.01 ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30 Consensus pattern (301 bp): ATTTGACACCCATATTGGCTATAATCTGAAAAATTAAATTTCAGGCTGGAATGGGCCGTTTTGGG CCGGTTGTAGGCCCGAATGTCCATGTTTTCTGAATACGCTGCACTTAACATTATTAAGCAAAAAC TGAGCGTAGAATGTCCGTTAATTAGAACCCCAAATTGGCTAAATTCTGAAAAAGTTACATTTCAG GCTTGAATAGCCCGTTTCAGGCCGGGTTCAGGCCCGAAACTTAGTGGTTTCACGATATGCGGCAC TTTTCATGCCAAACATCGAGTTTTTCGTGAAATTTCCTAAA Left flanking sequence: Indices 18514899 -- 18515398 CCGCCGGAACCGCATTTTTGCAGTACAAATCCGGTGTTCTAGTCACAGAAGATTGTGATTTAGCT GGCACCGTTTGGCACGCCGGAGCCATAGTCGGCTACGGAGAGGAAAACGATCTACGCGGGCGGAG CCAACGCTTCTGGATCATGAAAAACTCTTGGGGAGTGTCTGGATGGGGTACTGGTGGATACGTGA AGCTAATTCGCGGGAAAAATTGGTGTGGGATTGAGCGTGGAGCCATCGGAGCAAATATGGAGGAG CATTATCATGGTTGACTTTTTTTTCATCCAAATTTTTTAAATAAATTTTTATAATTTTACAAAGT GTGCTACACTAAATAGAAATTAAAATTTTTAACGTTTTACTAAAAAAAATTTGAAAAATGGTTAA AATTGAGGGTTTTTCACTTGAAGGGGCACATTTGGACCACTGCGGGGACATTGGGACATCGTGGG ACACTTTTTATGTAGAAATTCGAATTCTACGCCAAATTTCCCGGG Right flanking sequence: Indices 18517131 -- 18517630 TATTTTCAAAACATGCGGCTCTTTTCATGTGTAAACTCGAACTGAGCGCGGGCAAGCGTAAATTG AGATTACCGGTTAAAAATCGACTTTTAACATAAATTTCGAGTTGAATTGAGTTTTCACGGGCACC CCCTCCCCCTTCTCTGGCTTTAAAGGCGCATAACTTTGCTGAAAATTCTCCAATCTGAAAATAAT CATGATTTTCAGAATCACTGTGAAATTCTAAACATGAACGGTGACATCAAAAAACCAAGATTTTC AAAATTTCAAAATTTCTAATGTGTAGAAGTGGCTCAGGTGGGAGTGGTGGTAGTGGAGCCCACTT GGAGTGAAGGGTCTCGGGTTCGACCCCCCGGTAGTGTCACTTTTTTTTCCAGAGCTGTTGTTGTA AACTAGTAGAGCGTATTTAAGACAGGGAGAGTTGAAAGGTAGAAATTCTGCAAAAAAAAATTTCC AAAAAAAAATTTTTTTTTTTTTCTTTAACGTTGTACTTCGACCCC Found at i:18533032 original size:312 final size:312 Alignment explanation
Indices: 18532467--18533502 Score: 2016 Period size: 312 Copynumber: 3.3 Consensus size: 312 18532457 AAAATATCTA * * ** ** 18532467 TTTTTACAGTTTTATATCAAACATTTCGGTTTGAAACTAGAAAATTTGAATTCCTCATGCAAAAT 1 TTTTTACAGTTTTATATTAACCATTTCGGTTTTTAACTGAAAAATTTGAATTCCTCATGCAAAAT 18532532 TACCCCTTCATCCAAATTTTCTGTGTTTTAGTGTAATTTTCCGTCAAATCAGGTGCCAAGTCCGC 66 TACCCCTTCATCCAAATTTTCTGTGTTTTAGTGTAATTTTCCGTCAAATCAGGTGCCAAGTCCGC 18532597 AAACACCAGCCTACAGTAACCCAAGACACCAGAATTGACGGAAAATTGCACTAAAACGCTGAAAA 131 AAACACCAGCCTACAGTAACCCAAGACACCAGAATTGACGGAAAATTGCACTAAAACGCTGAAAA 18532662 TAGGTGAGCCAGGGGTAATTTAGCACGAGGAAACCGAAAATTAGCTCGAAATTCGAAAAAATTAA 196 TAGGTGAGCCAGGGGTAATTTAGCACGAGGAAACCGAAAATTAGCTCGAAATTCGAAAAAATTAA 18532727 AGTTTGAACTCATTTTTTGAACGTTTTTCGAAAATTTCGGAAAAATAGCTGT 261 AGTTTGAACTCATTTTTTGAACGTTTTTCGAAAATTTCGGAAAAATAGCTGT 18532779 TTTTTACAGTTTTATATTAACCATTTCGGTTTTTAACTGAAAAATTTGAATTCCTCATGCAAAAT 1 TTTTTACAGTTTTATATTAACCATTTCGGTTTTTAACTGAAAAATTTGAATTCCTCATGCAAAAT 18532844 TACCCCTTCATCCAAATTTTCTGTGTTTTAGTGTAATTTTCCGTCAAATCAGGTGCCAAGTCCGC 66 TACCCCTTCATCCAAATTTTCTGTGTTTTAGTGTAATTTTCCGTCAAATCAGGTGCCAAGTCCGC 18532909 AAACACCAGCCTACAGTAACCCAAGACACCAGAATTGACGGAAAATTGCACTAAAACGCTGAAAA 131 AAACACCAGCCTACAGTAACCCAAGACACCAGAATTGACGGAAAATTGCACTAAAACGCTGAAAA 18532974 TAGGTGAGCCAGGGGTAATTTAGCACGAGGAAACCGAAAATTAGCTCGAAATTCGAAAAAATTAA 196 TAGGTGAGCCAGGGGTAATTTAGCACGAGGAAACCGAAAATTAGCTCGAAATTCGAAAAAATTAA 18533039 AGTTTGAACTCATTTTTTGAACGTTTTTCGAAAATTTCGGAAAAATAGCTGT 261 AGTTTGAACTCATTTTTTGAACGTTTTTCGAAAATTTCGGAAAAATAGCTGT * 18533091 TTTTTACAGTTTTATATTAACCATTCCGGTTTTTAACTGAAAAATTTGAATTCCTCATGCAAAAT 1 TTTTTACAGTTTTATATTAACCATTTCGGTTTTTAACTGAAAAATTTGAATTCCTCATGCAAAAT 18533156 TACCCCTTCATCCAAATTTTCTGTGTTTTAGTGTAATTTTCCGTCAAATCAGGTGCCAAGTCCGC 66 TACCCCTTCATCCAAATTTTCTGTGTTTTAGTGTAATTTTCCGTCAAATCAGGTGCCAAGTCCGC 18533221 AAACACCAGCCTACAGTAACCCAAGACACCAGAATTGACGGAAAATTGCACTAAAACGCTGAAAA 131 AAACACCAGCCTACAGTAACCCAAGACACCAGAATTGACGGAAAATTGCACTAAAACGCTGAAAA 18533286 TAGGTGAGCCAGGGGTAATTTAGCACGAGGAAACCGAAAATTAGCTCGAAATTCGAAAAAATTAA 196 TAGGTGAGCCAGGGGTAATTTAGCACGAGGAAACCGAAAATTAGCTCGAAATTCGAAAAAATTAA 18533351 AGTTTGAACTCATTTTTTGAACGTTTTTCGAAAATTTCGGAAAAATAGCTGT 261 AGTTTGAACTCATTTTTTGAACGTTTTTCGAAAATTTCGGAAAAATAGCTGT * 18533403 TTTTTACAGTTTTATATTAACCATTTCGGTTTTTAACTGAAAAATTTGAATTTCTCATGCAAAAT 1 TTTTTACAGTTTTATATTAACCATTTCGGTTTTTAACTGAAAAATTTGAATTCCTCATGCAAAAT 18533468 TACCCCTTCATCCAAATTTTCTGTGTTTTAGTGTA 66 TACCCCTTCATCCAAATTTTCTGTGTTTTAGTGTA 18533503 CAGGGTGAGT Statistics Matches: 715, Mismatches: 9, Indels: 0 0.99 0.01 0.00 Matches are distributed among these distances: 312 715 1.00 ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32 Consensus pattern (312 bp): TTTTTACAGTTTTATATTAACCATTTCGGTTTTTAACTGAAAAATTTGAATTCCTCATGCAAAAT TACCCCTTCATCCAAATTTTCTGTGTTTTAGTGTAATTTTCCGTCAAATCAGGTGCCAAGTCCGC AAACACCAGCCTACAGTAACCCAAGACACCAGAATTGACGGAAAATTGCACTAAAACGCTGAAAA TAGGTGAGCCAGGGGTAATTTAGCACGAGGAAACCGAAAATTAGCTCGAAATTCGAAAAAATTAA AGTTTGAACTCATTTTTTGAACGTTTTTCGAAAATTTCGGAAAAATAGCTGT Left flanking sequence: Indices 18531967 -- 18532466 GTGAATTTTTCGATTTTTCGGGTCAAATTACTTGAAAATTACAACACTCTTCTAGACCACTATTT CCATCGGTTTCCGCGAAAAATTTCATATAAAAATCCAGTAGTTCGTTCACACGTGGCTTTTTCGT TGACGATGGTGATGTTGGAAACTGCAAATTTTATCGATTTTATGGATTTTGGATCAATTTTCCGG GTTTTTCGGGTATTTTTAGGTGATTTTTTATGATTTTTTACCCTGTTGCACATTTTCCTGCGCGT TGAACCAGTGATGAGCGCTCTCGTGGATTAAAAGGCCCGTATAGTGAAAAACTGTGGGTCTTGAC GCTGGAAATGCTCGAAAAACGTCGATTGCCGGCTTTACAAGTGCCGATTTGCGTTTTTCATCCGG AAAACATGCGCGGCTCCGATAGATTGACGTCAAATCGCCGAGACACGCGATTTTGTGGAATTCCT CGAAGATTTGCACGGTTTTCGCGTATTTCTGCAATAAAATATCTA Right flanking sequence: Indices 18533503 -- 18534002 CAGGGTGAGTCAAAATTATGGTAAGTCGAGGCGCGCGCGCGAAAGTTCTGTGGTTCGGGTCTCCC CGCCAAAATTAATTGATTAAGTTATTTCGTGTTTTGTTCATTTATTTTTCCATCGTTTTTCCTAA AAAATAATTTTTTTTTCGCAGGTATGAGAGCGTCACCCATGCGTGAACCCATCGTTCGTTTTCAT AGGAATGGTGTCGCGGCGAAGAGCATTGCTCGACGGCTCAAAGTGTCTGAAAAACTTGTTTCTAC CACCATTGCACGGTTCAAGGAGCTCGGCAACTTTTCCGATAGATCCGGACGCGGAAGACCCCCAC AGTCACTACACCAGCGATGATAAAAAAAGTTCGTGGACGCTTCCGTCACAACTCCGGGCGGTCGG TCCGTGCGATGGCCCGAGAATTGAAAATTTCGCAAAGTTCTCTGTGCCGAATGGTAAAAAACAAC TTGAAATTGAAGGCTTACAAAAAATCTACTTGTCAATTTCTGTCT Found at i:18535507 original size:311 final size:311 Alignment explanation
Indices: 18534789--18535815 Score: 1940 Period size: 311 Copynumber: 3.3 Consensus size: 311 18534779 CCCTGTAATT * 18534789 TTCCGTCAAATCAGGTGCCAAGTCCGCAAACACCAGCCTACAGTAACCCAAGACACCAGAATTGA 1 TTCCGTCAAATCAGGTGCCAAGTCCGCAAACACCAGCCTACAGTAACCCAAGACACCAAAATTGA * * * 18534854 CGGAAAATTGCACTAAAACGCTGAAAATAGGTGAGCCAGGGGTAATTTAGCACGAGGAAACCGAA 66 CGAAAAATTGCACTAAAACGCTGAAAATAGATGGGCCAGGGGTAATTTAGCACGAGGAAACCGAA * 18534919 AATTAGCTCGAAATTCGAAAAAATTAAAGTTTGAACTCATTTTTTGAACGTTTTTCGAAAATTTC 131 AATTAGCTCGAAATTCGAAAAAATTTAAGTTTGAACTCATTTTTTGAACGTTTTTCGAAAATTTC * 18534984 GGAAAAATAGCTGTTTTTTACAGTTTTATATTAACCATTTCGGTTTTTAACTGAAAAATTTGAAT 196 GGAAAAACAGCTGTTTTTTACAGTTTTATATTAACCATTTCGGTTTTT-ACTGAAAAATTTGAAT * ** 18535049 TTCTCATGCAAAATTACTCCTACACCCACATTTGCAGAGTTTTAGTGCCATT 260 TTCTCATGCAAAATTACTCCTACACCCACATTTGCAGAGTTTTAGTGCAAAA 18535101 TTCCGTCAAATCAGGTGCCAAGTCCGCAAACACCAGCCTACAGTAACCCAAGACACCAAAATTGA 1 TTCCGTCAAATCAGGTGCCAAGTCCGCAAACACCAGCCTACAGTAACCCAAGACACCAAAATTGA 18535166 CGAAAAATTGCACTAAAACGCTGAAAATAGATGGGCCAGGGGTAATTTAGCACGAGGAAACCGAA 66 CGAAAAATTGCACTAAAACGCTGAAAATAGATGGGCCAGGGGTAATTTAGCACGAGGAAACCGAA 18535231 AATTAGCTCGAAATTCGAAAAAATTTAAGTTTGAACTCATTTTTTGAACGTTTTTCGAAAATTTC 131 AATTAGCTCGAAATTCGAAAAAATTTAAGTTTGAACTCATTTTTTGAACGTTTTTCGAAAATTTC 18535296 GGAAAAACAGCTGTTTTTTACAGTTTTATATTAACCATTTCGGTTTTTACTGAAAAATTTGAATT 196 GGAAAAACAGCTGTTTTTTACAGTTTTATATTAACCATTTCGGTTTTTACTGAAAAATTTGAATT 18535361 TCTCATGCAAAATTACTCCTACACCCACATTTGCAGAGTTTTAGTGCAAAA 261 TCTCATGCAAAATTACTCCTACACCCACATTTGCAGAGTTTTAGTGCAAAA 18535412 TTCCGTCAAATCAGGTGCCAAGTCCGCAAACACCAGCCTACAGTAACCCAAGACACCAAAATTGA 1 TTCCGTCAAATCAGGTGCCAAGTCCGCAAACACCAGCCTACAGTAACCCAAGACACCAAAATTGA 18535477 CGAAAAATTGCACTAAAACGCTGAAAATAGATGGGCCAGGGGTAATTTAGCACGAGGAAACCGAA 66 CGAAAAATTGCACTAAAACGCTGAAAATAGATGGGCCAGGGGTAATTTAGCACGAGGAAACCGAA 18535542 AATTAGCTCGAAATTCGAAAAAATTTAAGTTTGAACTCATTTTTTGAACGTTTTTCGAAAATTTC 131 AATTAGCTCGAAATTCGAAAAAATTTAAGTTTGAACTCATTTTTTGAACGTTTTTCGAAAATTTC 18535607 GGAAAAACAGCTGTTTTTTACAGTTTTATATTAACCATTTCGGTTTTTACTGAAAAATTTGAATT 196 GGAAAAACAGCTGTTTTTTACAGTTTTATATTAACCATTTCGGTTTTTACTGAAAAATTTGAATT 18535672 TCTCATGCAAAATTACTCCTACACCCACATTTGCAGAGTTTTAGTGCAAAA 261 TCTCATGCAAAATTACTCCTACACCCACATTTGCAGAGTTTTAGTGCAAAA * ** * * 18535723 TTCCGTCAAATCAGGTGTCTGGCCCGCAAACACCAGCCTACAGTAACCCAAGACACCAGAATTGA 1 TTCCGTCAAATCAGGTGCCAAGTCCGCAAACACCAGCCTACAGTAACCCAAGACACCAAAATTGA * 18535788 CGAAAAATTGCACTAAAACGCAGAAAAT 66 CGAAAAATTGCACTAAAACGCTGAAAAT 18535816 TGGGGTATGG Statistics Matches: 700, Mismatches: 15, Indels: 1 0.98 0.02 0.00 Matches are distributed among these distances: 311 463 0.66 312 237 0.34 ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28 Consensus pattern (311 bp): TTCCGTCAAATCAGGTGCCAAGTCCGCAAACACCAGCCTACAGTAACCCAAGACACCAAAATTGA CGAAAAATTGCACTAAAACGCTGAAAATAGATGGGCCAGGGGTAATTTAGCACGAGGAAACCGAA AATTAGCTCGAAATTCGAAAAAATTTAAGTTTGAACTCATTTTTTGAACGTTTTTCGAAAATTTC GGAAAAACAGCTGTTTTTTACAGTTTTATATTAACCATTTCGGTTTTTACTGAAAAATTTGAATT TCTCATGCAAAATTACTCCTACACCCACATTTGCAGAGTTTTAGTGCAAAA Left flanking sequence: Indices 18534289 -- 18534788 ATATGTTGAAGACGGAACTCATGCCCTGGGTCAAGAAGCATTTCAAAAAAACAAAATGGACTTTT CAGCAGGATGGGGCGCCTGCTCATAAGCACAAGAACGTTCAGGCATGGTGTGAAAGCAACTTCCC GGACTTCATCGCTTTCAATCAATGGCCACCGTCATCCCCGGATCTCAATCCGATGGATTACTCAG TATGGAGTGTCCTCGAAGCAAAAGCTTGTTCAAAACCGCATAGGAATATCGATTCGTTGAAAGAT TCACTGAAGAAGGCATGGGACGAGCTGGATATCAACTACTTGCGCGCCACAGTCGACTCGTTCCC TAGGCGTCTGGAGGCCTGTGTTGCTGCTAATGGAGATATTTTCGAACTTTAAAATGTTTTTCTAT AGTGTTTTTTACGGTGAATAAAATGTGTATAGTTAGAAGTTGTTTGTGTTTCTGGAAAAATGTAT GGAGCACGGGAACTACTTACCATAATTTTGACTCACCCTGTAATT Right flanking sequence: Indices 18535816 -- 18536315 TGGGGTATGGGAGTATTTTTGCGTGGAAAAAATCGATTTGTTTGGTTTTCAATTCATAAAAATTT ACGGAAAAGGGAGAAAATTTAGGATTTTTGCAATTTTTCGGAATAAAAATCCGAAAAAAAATGAA AGGAGGGGGGGGGGTACTATACGTTTATCTTAAAATCGATTATAAGTCGCGAAATTTTGCGGTGG AGCATTTGTGCAACTCAAGAAGAAGAAAAATCACAAAAAAAGAGCAAATGCTGTGCAAAGTACAA AAAACAGCCGTACTCTAGCCACCCATTGGAAAAAATGAATAAAAATGTCGAACAATTCCTCACTT TGAGCAAAAAAATGCCGCGTTAAATGAAAGAGGGACGAAATTGAAATTAAAGAAGAGTAGATCAT AAATAAATATTTGTCGTAGGTCTGGAATACTGTGATTATCGATTTTCTCAGCTCCCCCTTTATCA ATTTTTATCGCAAGCCACTCAAAATGTAGCTAATTTTTTCCCTTT Found at i:18549436 original size:428 final size:428 Alignment explanation
Indices: 18548639--18549963 Score: 2622 Period size: 428 Copynumber: 3.1 Consensus size: 428 18548629 AAATCGATAA * * 18548639 TTCAAAAATTTTCAAAAAAATCGATTTTTTCTAAATTTTTCAAAAACAAAATCGAAAATTTCATG 1 TTCAAAATTTTTCGAAAAAATCGATTTTTTCTAAATTTTTCAAAAACAAAATCGAAAATTTCATG 18548704 AAAAATTCGAAAAAAAATCGATAATTCAACAATTTTCAAAAAAATCGATTTTTTTTCTAAATTTT 66 AAAAATTCGAAAAAAAATCGATAATTCAACAATTTTCAAAAAAATCGATTTTTTTTCTAAATTTT 18548769 TCAAAAAAATCGATTTTTTCAAAATTTTTCGAAAATTTCATGAAAAATTCGAAAAAATCGATAAT 131 TCAAAAAAATCGATTTTTTCAAAATTTTTCGAAAATTTCATGAAAAATTCGAAAAAATCGATAAT 18548834 TCAAAGATTTTCAAAAAAAATCGATTTTTTCAAAAATTTTCCAGAAAAATCGAAAATTTCATGAA 196 TCAAAGATTTTCAAAAAAAATCGATTTTTTCAAAAATTTTCCAGAAAAATCGAAAATTTCATGAA 18548899 AAATTCGAAAAAATCGATTTTTTTCTAAATTTTTTAAAAAAAAATCGATAATTTAATGAAAATTT 261 AAATTCGAAAAAATCGATTTTTTTCTAAATTTTTTAAAAAAAAATCGATAATTTAATGAAAATTT 18548964 CGAAAAAAATCGATAATTCAACAATTTTCAAAAAAATCAATTTTTTTCAAAATTTTTCGAAAAAA 326 CGAAAAAAATCGATAATTCAACAATTTTCAAAAAAATCAATTTTTTTCAAAATTTTTCGAAAAAA 18549029 TCGATTTTTTCAAAATTTTTCCAGAAAAATCAATTTTT 391 TCGATTTTTTCAAAATTTTTCCAGAAAAATCAATTTTT 18549067 TTCAAAATTTTTCGAAAAAATCGATTTTTTCTAAATTTTTCAAAAACAAAATCGAAAATTTCATG 1 TTCAAAATTTTTCGAAAAAATCGATTTTTTCTAAATTTTTCAAAAACAAAATCGAAAATTTCATG 18549132 AAAAATTCGAAAAAAAATCGATAATTCAACAATTTTCAAAAAAATCGATTTTTTTTCTAAATTTT 66 AAAAATTCGAAAAAAAATCGATAATTCAACAATTTTCAAAAAAATCGATTTTTTTTCTAAATTTT 18549197 TCAAAAAAATCGATTTTTTCAAAATTTTTCGAAAATTTCATGAAAAATTCGAAAAAATCGATAAT 131 TCAAAAAAATCGATTTTTTCAAAATTTTTCGAAAATTTCATGAAAAATTCGAAAAAATCGATAAT 18549262 TCAAAGATTTTCAAAAAAAATCGATTTTTTCAAAAATTTTCCAGAAAAATCGAAAATTTCATGAA 196 TCAAAGATTTTCAAAAAAAATCGATTTTTTCAAAAATTTTCCAGAAAAATCGAAAATTTCATGAA 18549327 AAATTCGAAAAAATCGATTTTTTTCTAAATTTTTTAAAAAAAAATCGATAATTTAATGAAAATTT 261 AAATTCGAAAAAATCGATTTTTTTCTAAATTTTTTAAAAAAAAATCGATAATTTAATGAAAATTT 18549392 CGAAAAAAATCGATAATTCAACAATTTTCAAAAAAATCAATTTTTTTCAAAATTTTTCGAAAAAA 326 CGAAAAAAATCGATAATTCAACAATTTTCAAAAAAATCAATTTTTTTCAAAATTTTTCGAAAAAA * 18549457 TCGATTTTTTCAAAATTTTTCCAGAAAAATCGATTTTT 391 TCGATTTTTTCAAAATTTTTCCAGAAAAATCAATTTTT 18549495 TTCAAAATTTTTCGAAAAAATCGATTTTTTCTAAATTTTTCAAAAACAAAATCGAAAATTTCATG 1 TTCAAAATTTTTCGAAAAAATCGATTTTTTCTAAATTTTTCAAAAACAAAATCGAAAATTTCATG 18549560 AAAAATTCGAAAAAAAATCGATAATTCAACAATTTTCAAAAAAATCGATTTTTTTTCTAAATTTT 66 AAAAATTCGAAAAAAAATCGATAATTCAACAATTTTCAAAAAAATCGATTTTTTTTCTAAATTTT 18549625 TCAAAAAAATCGATTTTTTCAAAATTTTTCGAAAATTTCATGAAAAATTCGAAAAAATCGATAAT 131 TCAAAAAAATCGATTTTTTCAAAATTTTTCGAAAATTTCATGAAAAATTCGAAAAAATCGATAAT 18549690 TCAAAGATTTTCAAAAAAAATCGATTTTTTCAAAAATTTTCCAGAAAAATCGAAAATTTCATGAA 196 TCAAAGATTTTCAAAAAAAATCGATTTTTTCAAAAATTTTCCAGAAAAATCGAAAATTTCATGAA 18549755 AAATTCGAAAAAATCGATTTTTTTCTAAATTTTTTAAAAAAAAATCGATAATTTAATGAAAATTT 261 AAATTCGAAAAAATCGATTTTTTTCTAAATTTTTTAAAAAAAAATCGATAATTTAATGAAAATTT 18549820 CGAAAAAAATCGATAATTCAACAATTTTCAAAAAAATCAATTTTTTTCAAAATTTTTCGAAAAAA 326 CGAAAAAAATCGATAATTCAACAATTTTCAAAAAAATCAATTTTTTTCAAAATTTTTCGAAAAAA 18549885 TCGATTTTTTCAAAATTTTTCCAGAAAAATCAATTTTT 391 TCGATTTTTTCAAAATTTTTCCAGAAAAATCAATTTTT * 18549923 TTCAAAATTTTTCGAAAAAATCGATTTTTTCAAAATTTTTC 1 TTCAAAATTTTTCGAAAAAATCGATTTTTTCTAAATTTTTC 18549964 CAGAAAAATC Statistics Matches: 892, Mismatches: 5, Indels: 0 0.99 0.01 0.00 Matches are distributed among these distances: 428 892 1.00 ACGTcount: A:0.46, C:0.11, G:0.06, T:0.37 Consensus pattern (428 bp): TTCAAAATTTTTCGAAAAAATCGATTTTTTCTAAATTTTTCAAAAACAAAATCGAAAATTTCATG AAAAATTCGAAAAAAAATCGATAATTCAACAATTTTCAAAAAAATCGATTTTTTTTCTAAATTTT TCAAAAAAATCGATTTTTTCAAAATTTTTCGAAAATTTCATGAAAAATTCGAAAAAATCGATAAT TCAAAGATTTTCAAAAAAAATCGATTTTTTCAAAAATTTTCCAGAAAAATCGAAAATTTCATGAA AAATTCGAAAAAATCGATTTTTTTCTAAATTTTTTAAAAAAAAATCGATAATTTAATGAAAATTT CGAAAAAAATCGATAATTCAACAATTTTCAAAAAAATCAATTTTTTTCAAAATTTTTCGAAAAAA TCGATTTTTTCAAAATTTTTCCAGAAAAATCAATTTTT Left flanking sequence: Indices 18548139 -- 18548638 GTTTTCGAACGTCTTTCCCCAAATAGTCATAATTGAAGAAAGCGGAATCGAAAGACGACTTCCTC CAGAAAATTTTCTTCCCTCCATCCCATTTTGAGGAGTCTCCCGCATGGCCGAGTGGTTAGTGCGT ATTTCTGCAGAAATTTTGGTAGTTGGTTCAATTCTACCAACTGACGAACTTTTTTGTTTTTTGTG AGTAATCGGGATTCGAATAGAAATACTCGATTTTATACAAAATATGGGTACGTCTCCCCCAATAT AAACCCTCCTAAAACTTCAATCAATCAAAACTCAGCTTTAACTGATTCATCGGGTGCATCTGTTT TTGGTCAAACCGAACTCAAAAAACAAGAAGACTCCCATTGACCTACTGAAATTTTCACGAACCCT CTAACAGGTTCGAGGCGAAGCCGAGAGCCTACGCCCGGCAAGGGGACTCGCCTTACACCCCCTAC AACTGGCGGGCCCGCAGGGCCCGCTAGTCATGAAAAAATCGATAA Right flanking sequence: Indices 18549964 -- 18550463 CAGAAAAATCGATTTTTTCAAAATTTTTCGAACATTTCATGAAAAATTCGAAAAAAAATCGATTT TTTTTCCAATTTTTTCACCAAAAAACCAACCATTCCAGACACGTTGAAATCGCCCAACGCATCGC CCGTTCGCCGTTCTCCGACGGAATCCTGCGTATTCTTGCCGAAACTCGAAGTTTCGCCTACTGCC TGCCTATCATGAAGTCGAAGTTGGCCGTGCTGCTCAACGATACCGAAAAATTCCCCGAACACGTA GCAATTTCCGAGCCAACGCGGCAAAAGCTACAAAACTGGGTGTTTTTGGCGCAAAAAGGCGGGAT TTTGCCCGGCAGACTGGCGCCGATTTGCGATTTGGAACAATTCTCCACGTGTCATGAGACACATT TGATGCTCGTCGAGATTTGGCGATTTTTTGTGGTAAAAATAGGAAAAATTTCGAAAATTTTTGAA AATTGACCCAAATTTTGATTTCCGCACCGCCAAAAACTTGGCCCA Found at i:18564525 original size:181 final size:182 Alignment explanation
Indices: 18564221--18564601 Score: 653 Period size: 181 Copynumber: 2.1 Consensus size: 182 18564211 AATAAATATA 18564221 TAGGTCAAATTTCAAATAAATCTGAAATAAGTAGGCCACATTTCCAAGAAATTTGAAAAAGTAGG 1 TAGGTCAAATTTCAAATAAATCTGAAATAAGTAGGCCACATTTCCAAGAAATTTGAAAAAGTAGG * 18564286 TCAAAGTCTAGAGGGAATTATAGAAGTAGGTTAAATTTTGGAGAAACCTCAGAAAGTAGGTCAAA 66 TCAAAGTCTAAAGGGAATTATAGAAGTAGGTTAAATTTTGGAGAAACCTCAGAAAGTAGGTCAAA * * * 18564351 TTTAAAAGAAATCTGA-AAAAGTAAGTCAAATTC-AAAAGAAATCTGGAAAAG 131 TTTAAAAGAAATCTAATAAAAGTAAGTCAAATTCTAAAAAAAAT-TGAAAAAG 18564402 TAGGTCAAATTTCAAATAAATCTGAAATAAGTAGGCCACATTTCCAAGAAATTTGAAAAAGTAGG 1 TAGGTCAAATTTCAAATAAATCTGAAATAAGTAGGCCACATTTCCAAGAAATTTGAAAAAGTAGG * 18564467 TCAAAGTCTAAAGGGAATTATAGAAGTAGGTTAACTTTTGGAGAAACCTCAGAAAGTAGGTCAAA 66 TCAAAGTCTAAAGGGAATTATAGAAGTAGGTTAAATTTTGGAGAAACCTCAGAAAGTAGGTCAAA ** * * * * 18564532 TTTGGAAGAAATCTAATAAAAGTAGGTTAGATTCTAAAAAAGATTGAAAAAG 131 TTTAAAAGAAATCTAATAAAAGTAAGTCAAATTCTAAAAAAAATTGAAAAAG 18564584 TAGGTCAAATTTCGAAAT 1 TAGGTCAAATTTC-AAAT 18564602 TTACCTTTCA Statistics Matches: 186, Mismatches: 11, Indels: 4 0.93 0.05 0.02 Matches are distributed among these distances: 181 141 0.76 182 34 0.18 183 11 0.06 ACGTcount: A:0.45, C:0.10, G:0.19, T:0.25 Consensus pattern (182 bp): TAGGTCAAATTTCAAATAAATCTGAAATAAGTAGGCCACATTTCCAAGAAATTTGAAAAAGTAGG TCAAAGTCTAAAGGGAATTATAGAAGTAGGTTAAATTTTGGAGAAACCTCAGAAAGTAGGTCAAA TTTAAAAGAAATCTAATAAAAGTAAGTCAAATTCTAAAAAAAATTGAAAAAG Left flanking sequence: Indices 18563721 -- 18564220 CTTTGAAAAAAAATCACCTGAACACTAAAGATCAACCAGTAAACACATACTTCCTCTCAATTATT TGCTCTATTTCTTCCGTTTTTTTTCACGTTATTTTTGAAAAGGGGCTGCTAATGCCAACAAAAAT GACGTGACGAACAAAAAAAGGTCAGAAAATAGAAACATCACGAACTTTTGACATTTTCAAGAAAG TAGGTCAAATTTAAAAGAAATCTGGAAAAGTAGGTCAAATATCTGTGGCACATCCAACAAAAGCT TTTTACATAAGTATCTTCCCCTATGGAACAGTGTAGCTTTATTATTACCGGTTAAATTTTCCCGC CCAGCCTTCTCAGCACTTATAAGCTCTATACCTCTTGATAAACTTCTTCCCCACATTTGATCTCG AAACTATATTACGGTTACTTGATCATCTTATCGCTCACATGTTTTGTCCTTTTTAAACCCTTTGA TTCTTCTTCTTGCCATTTCTTTAAAAACGTGAACGAATAAATATA Right flanking sequence: Indices 18564602 -- 18565101 TTACCTTTCAACCCCCTTTTCTCATTTGTTTCGTTAGTCAGTTTGTCTATTTTAGTAGTTCCGTG TCTGTGGTTACCTTGTGCACTGTTTGCTCAACAAACTATGATTTTACAAAAAAAAAGTCGTCGCG AATTTGTAGTCTGTGAAAAAAAGAAAAAAAAAGTTTTATTTTAGGGTTAAAACATTTTTTAATCA AGAATTTGGCGCCATTGTGTTCAGATTCTTCGGCAGGGACATTACTACAATATTGCTGTTGCTCT CGGCAAAAAATCTGTGATTCTTGAATTTTTCCAATAGTCGATTAGATTCCGCGCATTTTCGACGA ACCTGGAAAAAAAAATTTTTTCGACGAAATTTTTTTTTGAATTTTTATTTTTTATTTTTCATTTT TCTAGTAAAGTTTTTTCTCCTGATTCCAAAAATATACTTTTCATCGGTCTCAGTAACCGAGTTAC GGCGGGTTTTGCAAGCGCCGGCGAGAGAGGTGGAGAGCGCAGAGA Found at i:18584191 original size:126 final size:126 Alignment explanation
Indices: 18583968--18584377 Score: 694 Period size: 126 Copynumber: 3.3 Consensus size: 126 18583958 GAAATTTTTC * * * * * 18583968 AAGTCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGACTATCCC 1 AAGCCTAAACCTAAGCCTAAGCCTAAGCCTAAACCAAAGCCTAAGCCTGAGCCTAAGACTATCCC * 18584033 TAAGCCTAAGCCTAAGCCAAAGCCTACGCCTAAATCTAAGCATTAGCTTAAGCCTAAGCCT 66 TAAGCCTAAGCCTAAGCCAAAGCCTACGCCTAAATCTAAGCCTTAGCTTAAGCCTAAGCCT * * * 18584094 AAGCCTAAATCTAAGCCTGAGCCTAAGCCTAAACCACAGCCTAAGCCTGAGCCTAAGACTATCCC 1 AAGCCTAAACCTAAGCCTAAGCCTAAGCCTAAACCAAAGCCTAAGCCTGAGCCTAAGACTATCCC * * 18584159 TAAGCCTAAGCCTAAGCCAAAGCCTACGCCTAAATCTAAGCCTTAGCTGAAGCCTAAGACT 66 TAAGCCTAAGCCTAAGCCAAAGCCTACGCCTAAATCTAAGCCTTAGCTTAAGCCTAAGCCT * 18584220 AAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAACCAAAGCCTAAGCCTGAGCCTAAGACTATCCC 1 AAGCCTAAACCTAAGCCTAAGCCTAAGCCTAAACCAAAGCCTAAGCCTGAGCCTAAGACTATCCC * 18584285 TAAGCCTAAGCCTAAGCCAAAGCCTACGCCTAAATCTAAGCCTTAGATTAAGCCTAAGCCT 66 TAAGCCTAAGCCTAAGCCAAAGCCTACGCCTAAATCTAAGCCTTAGCTTAAGCCTAAGCCT ** * ** 18584346 AAATCTAAACCTAAGCCTTAGATTAAGCCTAA 1 AAGCCTAAACCTAAGCCTAAGCCTAAGCCTAA 18584378 GCAATATCAA Statistics Matches: 260, Mismatches: 24, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 126 260 1.00 ACGTcount: A:0.35, C:0.31, G:0.15, T:0.19 Consensus pattern (126 bp): AAGCCTAAACCTAAGCCTAAGCCTAAGCCTAAACCAAAGCCTAAGCCTGAGCCTAAGACTATCCC TAAGCCTAAGCCTAAGCCAAAGCCTACGCCTAAATCTAAGCCTTAGCTTAAGCCTAAGCCT Left flanking sequence: Indices 18583468 -- 18583967 AATTTTGTTTTTTTTTGTGAACTTTGAATCATCACCCTCGTCAACAGCTTACAATTTGTATCATC ATACTGTTTTATTTTAACATTCACTTTTTTTCCAGTTTTGTTCAGTTTTTTTTATTGGAAAATTT CATATAAAAGTCTAAATTTCTATGTAAAAACCTTTGAATTTGTTATTTTTTGTCCTAAAAATTTT GGATTTTCTACAAAAAAACCATATGCGAATTCAATTTCCTACCTAAACACCTCTGAAACCTTGAT TTTTAGCTAAAAATTTCTGAAATTTCGAATTTCACATTTAACCAAAAATATTTTCCAACTCAAAA ACCGTCAAACCTCATGATTTTCTGTTAAAAGTGTCTGAATATTAGATTTTTGAGAACTAAAATTC ACTGAAAATTCAAATTTCCTATGTTAATGGCCGTTTTATGACACTTTTTGACCCGACTTAAAAAA TTTTTTTCTTTTTTTCGGATTTTTCGGAATTTCTGGAAATTTTTC Right flanking sequence: Indices 18584378 -- 18584877 GCAATATCAAGCTCTTTGAACTTTTTGTTGATGCTTCTTCACTCTATTTCCGATCGCAAAACGAC CAAAATTCCATCAATCTTCCCAAAAGTCACGCGGCGGGACCCAAAATTAATGTCAGCTGCCGTCG TAGGGAAAAGAGGCCAAACTTTTCGAAAAGTTGACATGATCATACAACACTTGGCACCCGAATTC CTGTCAAAAAGTGTAATTTGGAGCACACAGCTGTCCGTAAAGACGGGATGCTTCTTCTAAACAAC CCACCCGGAGCATTTGCTCTTTGAAATGCCTCTTGGAAATGCTCCACGAGCTCCAAGAATTTTTA AATTTCAAATTTTTTTAGAAATGCACCTCCAAGAGCCTAACTTGAAAATTGTTTGCTATTATTCC CACGTCAAATTTTATCTGAAAAACAAATTCCAGCATAATTCTGAGTTTACTGGTACAGTCTTCAG GCGTAGGCTTAGGCTTAGTGTTAGGGTTAGGCTTAGGCTTGGGCT Found at