TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_II Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15279311 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:2926040 original size:6 final size:6 Alignment explanation
Indices: 2926029--2926045 Score: 27 Period size: 6 Copynumber: 2.8 Consensus size: 6 2926019 GCAATGACTT * 2926029 CTGCAG CTGCAG CGGCA 1 CTGCAG CTGCAG CTGCA 2926046 CATCCCATCC Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.18, C:0.35, G:0.35, T:0.12 Consensus pattern (6 bp): CTGCAG Left flanking sequence: Indices 2925529 -- 2926028 GCCTGTCCAAATGCGAGCCGCCCAACGTCGGGACGTCTTTGTCCTGATGTGGGCATTCGAGACGG CGACTTTCTGCGATCTAGCTTATCACGTCGGGATGTTCATGTTGGCCGATGAGCACGCCGCGAAT AGTTGCTCCGCGATCTTTGTAAGTTTTATGCTGAGAGTTTGAAATTCGTAGTTTGTTTCAGTACC ACGATCAACTGCGCTACACCGCACTCAAGGCTCCGTACGACTTTATCAACTTTATCATGCCAGTC TGGGCGATCCTGTATGTGTTCCGATCGAAGACCAAGCTGAGATCGGATAGTGATGAGGATTCGGC AGAGTCATCAACCGCCTCCTCCACCTGGTCCTCCAACCACTCCCGAAACAACGTCCGAATCGCCG ACGTGATAACCGTCCGTAACTGGCGCCGCGCTACCGCCCACTCACCCAGCCTTCCGCCTCAGAAC GTCCCGTCCTTCACTCCCAATGGCGTCAGAATCGAGCAATGACTT Right flanking sequence: Indices 2926046 -- 2926545 CATCCCATCCCAAACATGCTCTCCCCACCACCATCTGCTGCTCCAGCGGCACCCCGACTCCGAAG TGTGTCATCAGCCCCTATGATCCGCCGGATCAGTGTCTCACACTCCATTGTGAGCTCCCCGCTGT ACAGTATACCAGAGGAGTATCAGGTGAGATGAGCTCCAGTTGGGACTGATTTTCAAGATTTCAAT TTAGAGAACTCGGGCCCACCACAGATGATCGTCGGCTCGCTGGACACCTTCTCAACAGTACCTCT TCTAGATTAAAGAGCATCTAGTACACATTTGTACTAGAAATACTAACATTTTTTCCTACTAACAC CTTGGTCTTTCACATTTTTCCCGCCTTCACGTTCCATTGAGCTTTTCGTGTGTTGTTTCTTCATA TGTATCACAGTTTTCACTTGAACCGACGGGTTTGTTAATTTGTAATTTATGTACATATATATACT CATGTCGTCTATAAATTCTGAAACTTCTTGGTAGCTTACTGAATT Found at i:2927407 original size:4 final size:4 Alignment explanation
Indices: 2927398--2927411 Score: 28 Period size: 4 Copynumber: 3.5 Consensus size: 4 2927388 GAAGGACTAG 2927398 GTAA GTAA GTAA GT 1 GTAA GTAA GTAA GT 2927412 GAAACGGAAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 10 1.00 ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29 Consensus pattern (4 bp): GTAA Left flanking sequence: Indices 2926898 -- 2927397 CTGTAACTTCTCAACGGGGACAGCTATCGAATAATTTTCCACTGCAAAAATGCTCCAAATTCAGA GCTCTACACATTGTTTGGGACCTTTTTTTGTAAGTTAGAAACACATATATATATATTAGAATATT TATTCAAGAGCTCCAAAAAACACCAAAATCACTTCTTCTTCACAGTCACTGAATGGGTCTCCTTT TCCTTCTGAAGGCCACTTTTATAGGTAGCCGTTTCATGTGTGATCTTGACTTCAACTTGGCGAAC GCTGCTGCTATCACAATCTGAAAAAATTTGATAGAATCTTGAAAATAGCTTCGAACTTACGAGCT TGAACCTGATGGTCCGCGAAAGTCGCCACTTGATTATTCGAGGATTTTGAGCCTTGGGAGTCCAT GACCTGAAACAAAAAGAAGTAGTTAGTGTAAGGGCAAGACCAAAAAGCTTGGAAGTCTGGGCCGG GCTTGGGTTGGGCCGAAATCTGGGCCGCAGGCTGAGAAGGACTAG Right flanking sequence: Indices 2927412 -- 2927911 GAAACGGAAAGTACTAAAAACATCCACAGTTCCTTTTTTAAAGAGGATCTTATCAGGTTATCAAT AAAAATTGTTTTTGTACGCAAATATTTTTGTTTTTGACAAATTTGGTTCAGTTTTACGATGAGCA AGACCGGAAAGTTGATAAGCTTCGGTGCTGGTCTTGTGCCAGGCAAAGGAGGCAAGAGGCGTATA TAAAACGGTAAGGGTGTGCTCATTTTTGTGCATTATCTTGTTTAGGGCTCCCATGAGGTCGCCGC AACGGCGCCTGCGCCGGCCTTACCCAGGCCGAATGTATAGTGCGGCGCGGACCTCCTAACGTGGC GGCCGCTTCCAAATAACTACCCTTTCGCGCCTTGCTCAGCTAGGCTCAACATCACAATTTGATTC AAATTTCAGGCCTTTCTTCAGTCCCAGAACACATTATGGACCCCCAAGGCTCGAAAAACGCAATT AATCAAGTTTCGCGCTCCGTTGAGAAGCAGGTCTATAACCCTCGT Found at i:2928204 original size:6 final size:6 Alignment explanation
Indices: 2928193--2928211 Score: 38 Period size: 6 Copynumber: 3.2 Consensus size: 6 2928183 GTGCTCATCT 2928193 CGCCTA CGCCTA CGCCTA C 1 CGCCTA CGCCTA CGCCTA C 2928212 ATATACTACC Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 13 1.00 ACGTcount: A:0.16, C:0.53, G:0.16, T:0.16 Consensus pattern (6 bp): CGCCTA Left flanking sequence: Indices 2927693 -- 2928192 ACCCAGGCCGAATGTATAGTGCGGCGCGGACCTCCTAACGTGGCGGCCGCTTCCAAATAACTACC CTTTCGCGCCTTGCTCAGCTAGGCTCAACATCACAATTTGATTCAAATTTCAGGCCTTTCTTCAG TCCCAGAACACATTATGGACCCCCAAGGCTCGAAAAACGCAATTAATCAAGTTTCGCGCTCCGTT GAGAAGCAGGTCTATAACCCTCGTATGTTCAGTGCTTTTTCTTATTTTTAGTCTTAATTCCATCC TTATTCCAGCAGCAACCAACGGCTGGAAGCAAATTGAAGTCAAAAACGAAGTGCACAATATTCAA CGCCCGAATGGTGCAGTCCAGGAGAAAAGAATTCAAAATGTGGTGTACAAGAAGTAAATTTTTTG TGTTTTAACTTATTTTATTATCACCGCCACGCACAATAATAATAAACTTGTAACTATTCTTTGAT GAGATCCAGTGTAATAACTTTCATGCTCTGAAAAAGTGCTCATCT Right flanking sequence: Indices 2928212 -- 2928711 ATATACTACCTACCACATTGTCGATTGTCAACTTGTACATTTGTCAGGTAGGTTATACGGAACAT CAGACATTCATAGTTGTTTTGGAATAACAATGGGTTATCGTAAAGGGCAACTGGTGTGCTGGAAG TGGAGATGGCGTGCTGAAAAGAACCAAGATGCAGGATCAGCCTTTTAAAAAACGACGCGTTACTA CCTCTAAACTTGCCAAAATTGCGTTCTTCAGATATTTATTCGAACGGATCAAAATCGCTGGCCGA GCCGCATCCGGTGCGATCACATAAGCTAACTTGTACAAAAAGTCCAAACCTTCCGCTTTCATGTA CTGAATTTTCAGCGATCCAAAAATGAAAACCACACCAAAAAGCTTGTATAAATGAGTTCCCGAGT TGACGTCGACCTCCACATCGCCAATGATTCCATAACAATTGGTGGGCAGTTTTTCCAACGTGTAG AATATACAGACTCGTGCCCAATCTCGGATGTTTCCCACATCTTTT Found at i:2929288 original size:5 final size:5 Alignment explanation
Indices: 2929278--2929290 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 2929268 GGTTCCTAGT 2929278 TTGGC TTGGC TTG 1 TTGGC TTGGC TTG 2929291 AACGCTGATT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.00, C:0.15, G:0.38, T:0.46 Consensus pattern (5 bp): TTGGC Left flanking sequence: Indices 2928778 -- 2929277 AAGGTTAGGCAAAAATCGGGATGCAGGTTCTCGAGGTTCAGGATCGTTGCGCCGGGGTCTATCTC GTTGAAGAGCTGCTGAAAGTTTTGAGGGTTGGCTTGATCTACCTCCTGGCCAAGATATGACAAAG GCCTGTCCGAGGTCGGTCCGAGGCCTGTTTCTACCAAATGTTAAATAGAAGGGTGACAGATGTTT GTCTAGATCCTATGATATTAGCTAAAGGGCCTATCGAGTTCTGTCCAAAGTCTGACCAAGGTCTC ACCGAGTTAAGACTGAAGCCTGTGCCTAGATAAGTCTGTCCGAGTTTGGAGACTGGTCATACCCT GGACGATCTGCCAAATGTCTTTCCAACCAGAGTTTGTGCTAAGCGTGATCTAAAGTCTGACCAAG GCCTGCGTTCACTTTTAAGATGTACCCCGTCGTGGACATAGATTATTGGCGCTAACGTCAAACTT CTACTGGGTACGTTTACCGCTGCGCTGAATGTCGCGGTTCCTAGT Right flanking sequence: Indices 2929291 -- 2929790 AACGCTGATTATCATTAACTATAAAACATCATAGTGGTCCAATTGGCGGCCCAAAATCCCGGAAT GGACCAACTCTCACTTACCAATCTTTCATTAAACCCCAATCGTGTCATCTCATAGTTATCGTGAA TGTTAACCACTACTTTGTCCCCCAACCTGCCATTTCTCGACACAATAACTTTCACATTTTTCAAA AACGTCAAGTTTTCGAAATCAGTGAACCCAATCTCAACATCGCCTCTTATTTGAACGACATTCGT TAGAGCACTTAAATCCTCAGTAAACGTGAAGTTTATTAGCAGAAGTCCGCCAATCAGCGTCTTGC ATTTTCGATAGGTATGTAGGTTTTCGGCAGTGATAAGGCCACCGTTGCATTCTGAATTTATATCT TGATCTCTAGAAAAGTGACTACGGGCACAAATACCGCAATCGTTGAAATTTCCAGTAACAATCAT ATCAAACATGTCTGCCACAGCACCTTGAGCACAAAGATGTGTTGC Found at i:2932998 original size:4 final size:4 Alignment explanation
Indices: 2932989--2933001 Score: 26 Period size: 4 Copynumber: 3.2 Consensus size: 4 2932979 AGGAGAGACG 2932989 CAGA CAGA CAGA C 1 CAGA CAGA CAGA C 2933002 TTTTAGTCTT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 9 1.00 ACGTcount: A:0.46, C:0.31, G:0.23, T:0.00 Consensus pattern (4 bp): CAGA Left flanking sequence: Indices 2932489 -- 2932988 AAGGTTCGGGATTTCTACAAAAGCGGTGAGTTTGGAGGATCTTCTGGAAGGCCCATTCATTATTA ACTTGGAAAACTTGCACCCAGACTTTTGTCTGACTTTTGAGGAATTTCTATTCTTTTTGTACAAC AATATATCCTTCAAAAACCTTGACGCAACCTATTGCGATAACGAGACCCAAATCTATGGGGAACC GATTTGTGAATTCAAAACCATGAGGGATCTGAAATATGGATGCAGTTATATTATTGGAAATGTGA TGATTGGTCCGGGCGATGAAGAATTCGTATATAAATTGAAGGAACTTGAAGTTTTATTCGGGAGC TTGACGATACGAAATACTACACTGAAAAATGCAAACTTTCTATTTTATTTGAGTTTCATTGTGCA TTTGGAAGAAGATCATGTGATGCAAATTATGTTAAATCAGAATTTAGAAGATTTGTATTTTCCTT ATTTGCAGGTGAATTGAAAGTTTTCCTCTATCTCTAGGAGAGACG Right flanking sequence: Indices 2933002 -- 2933501 TTTTAGTCTTCCCATATCCCTAGGTTTAGACTTCGGCTTAGGCGTAGGGCTAGGCTTTGACTTAG GCTTAGGTTTAGGCTTAGGCTTTGGCTCAGGCGCAGGCTTAGGATTAAGCTTAGGCTTCACTTTA ACCCGATGTATCTTTGCAACGATTGTAGATATCGCAAAAAAAGACAAAATTATTAAAAATTTCAG CGAAAATTTTTTCGTTCAGAATATTATTACAAAACACACTTCCCGGACTGCAGTAGTTCACAAAA ATCCAAAACTCGTTGCTAAAAAACGATTTATATATCCGATCAGTTATCAAACTAATTTAGCGCTT CTTGGTGACTTTTTCGGTGAGTTTTGAAAAGTTTTTAAAATTCAAGTTGGTTTTTATTTCAGAAA GCTCAACAACAAGGTCGTATGCTACAACTTGTGTGATTTTTATATTATTATTGAAAATAAACTTT TAGTTTTTCAAAGAATAAGATAAAAACCATAACGAAAAAGCTCGA Found at i:2935077 original size:5 final size:5 Alignment explanation
Indices: 2935067--2935080 Score: 28 Period size: 5 Copynumber: 2.8 Consensus size: 5 2935057 TCTGAAGGGT 2935067 TTTAA TTTAA TTTA 1 TTTAA TTTAA TTTA 2935081 TTAATTTTTT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 9 1.00 ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64 Consensus pattern (5 bp): TTTAA Left flanking sequence: Indices 2934567 -- 2935066 ATTGTAACCGTCATGAAGCCGGGAGATGTTCCGCCAAGAGTGTAACTTTGCTAACCTGTAAGGCG TCGGCTGCAAAAGTTGGCTAAGGGTTGAGAGCTCAATTCGCATACCCGGAAGATGTCGGCTGCTA ACATATACAAAAACATTTCAGGTTTTCTACACTATATTTTCTATTTTTTGAGGGCATCATTAAAC CTGTAGGGTGTCGGCTGCTACTATTTTACGAGTACACATTTATTCAAGAGCAACTAAAAAGAAAA GTAGTGAAACAATATATTTTCCTGTGAATATGCCATTGCTCAGTTTCCCTGAAAAACTTTTGCTG TCCTTATGATCTTCTCAAGACACTTACCACAATCTTGATTATCAAGTTCAATATCATAACCTTCA GCATCATAACCTATACTCATTAGAGAACATCGTTCATAATCAGTAGGTAAAAGTTGATTATCATA AATTACAGCTTGCTGGCCACTAGATGAGATAATATTCTGAAGGGT Right flanking sequence: Indices 2935081 -- 2935580 TTAATTTTTTTTGTTGAAACAAACCATTATCACTGGAAGGTTAGGCTTGATTAAATAGTTATTTG ATCTGATAAGAACCGCCGGAATAGAAGCTGAAAGGTAACTCTTATATTTTCAATTTTCATTTAAG CTCGGCTGAGCCCAACTGAGCCTGAGCTCACCAACCATCCAAGTTCCCAATATAGTTAAGATCTG TCAAAAAGTACAACCCATCCGATTTAGAGTACTGAATTTTCAACGTGCCAAATATATATTTGATT TTAAAAAGTTTGTAGAGATATCTACCATCGTTGGCGTCGACCACCACATTTCCCACTAGTGCTGT ACAGTTTTCCTCTGAAGAGCTCAACTTGGAAAATGCACAAGGTTTAGTGAGATATGGGATTTTTT TGGCTAGATTCTGTGAGCAATATTTGGCTTGTATATTCGTGAATTTTACGTATGCAAGAAAATTC ATCATTTCTTGAATGGTTAGACAGAAGTCGGGGTGCAAATTTTGC Found at i:2940649 original size:6 final size:6 Alignment explanation
Indices: 2940638--2940650 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 2940628 TGTTCTGCGT 2940638 CTCCCC CTCCCC C 1 CTCCCC CTCCCC C 2940651 ACACTCTCTC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.85, G:0.00, T:0.15 Consensus pattern (6 bp): CTCCCC Left flanking sequence: Indices 2940138 -- 2940637 TGACACTTGTGAGCTCCGAATTGTTGAGAACCGACATACCGACTGAAAAATGTTACCATAACTAT GTAAAACTATCCAAAAAACTACAGTTAACTCACAAGTTTTACAGTTGAATGTTATTGAGTCTACG TCATGCACCCAAAAAATCGATAAATTTTGAAAACCTGTGTTCTCAAATGTGATCCCGCCGGAGAA AGTTCTCATATTTTTGAATAAAGTAACTAATTCAGAATGTGATAGATCCGTGTCAGAATTAAACG TAAGAATCCCGCATACTGTATCGCAGGTTGTTGGGAAGTATTGAGCAGTAGAAGATGTGACTTCA GAATGATTAAAGGTGCATAGAGGATCTAAAATTTGAGTAGATATTTAAATTTTGAGTATTTCACC AGTTGGAAGTTTTTGATATCTCTAACCATTCCGGAGATATAAAGGGTTAAAGGAAAACCGCGAGA GAGTGTAGGGGGAGGGGAGACGCAGATGGCGAGAGTGTTCTGCGT Right flanking sequence: Indices 2940651 -- 2941150 ACACTCTCTCGCGTATCAACTTTGAAGCGGCATAACTCAGCAACGAGAAGAGCTATCTATTTGAA ACTTTTTCGTCATTGCAGCAATTTTTCCATCGAATTTCCTTACCACACTTATGAGTCAACGATAA TTTTTCCAAATTTGAATTAAAATCCGCTAGAACAAGTGACACCAAACAGGAGAGAAAACGCATTA TTTGTTCTGAGAATGAGACAATCTTTGTGTGGAGACTAAAGAAAATTGGCACTTTCTGATATATA ATTTGTTTTTGGGTACAAAACAAGTACTAGTAATATTCATTTGGAGAAAATGAAAAGTAGAAAAC AAAGAAAATGGAGAGTTTACAAGTTTGTCCCTCGGAAAACACGTAGATTTGACGGTCTGAAAGTT TTCGAAGCTGAAATTTCAAGTCTAGAGCTTAAGTTTTGGGCTTTACCACAATCCTGATTATTGAT CGGAAGTCTTGCATTATAAGTAAGCCGAAACAGGAGACACTTGTC Found at i:2945595 original size:6 final size:6 Alignment explanation
Indices: 2945584--2945596 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 2945574 TGCTAGACGC 2945584 AGGCAT AGGCAT A 1 AGGCAT AGGCAT A 2945597 TGTGTATGAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.38, C:0.15, G:0.31, T:0.15 Consensus pattern (6 bp): AGGCAT Left flanking sequence: Indices 2945084 -- 2945583 GGGATCTTTGCGAATATGACCCTTTTGGCAAGCTGTTCAGTGTGATTTTCAGAGGAAATTCCAAG GATTGCGGTAACTATTTTCCTTTAATTTTAGGCCCAGTTTCAGCTTGTTCCAGGTTGCCGCGGCG ACCAGATCACTGCCGATTCTATGAAAAAACTACGAAAATGCTCAGTAATTTTCACTCTAAACTTG ACAAACATCTCTAAATTCGACGCGGATTTTCTGGATCTTTCGCGAATCTACGAAGTACGTGGATT GGTGGAGATTCGCGGCACTGACGTCACAAATTTGTCGTTTTTGAAGAAGCTGGAAGAGATTCGTT CGAATAATGGGGTGACACATGAGAATGTTCTTTTTAACATTCGCGATAATCCGAATATGACAACA TTTGGAATGCCGGTGTTGAATGTGAGTTATGGTGAGAGGCGTAAGGGTAAAGTGGGCGTAGATGT AGGCGTTAGGTACCAGGACTACGGCGTAGGCTTAGTGCTAGACGC Right flanking sequence: Indices 2945597 -- 2946096 TGTGTATGAATAGGCGTGGGCGTGGGCGTAAACGTGGACATGGGCGTGTGCGTGGGAGTAGGTGT ATGTGTAGGTGTGGGCGTATGTGTCGGCGTATGCGTCTGTGTATGTGTAGGCGTAAGTCGATGCC CTAAATGGCCTAAACGCCCTAAAAGCCCTAAACGTCATAAACGCTCAGAATGCCCTAAACGCCCT GAACGGCCTGAAAGGTCTTAACGCCCTTAACGTCCCAAACGGTCTAAACGGCCTAAAAAGCCTAT ACGCCCCAAACGACCCACACGGCCTAAAAAACCAAAACGCCCTGAATGTCACAAACGGCTTAAAA GATCTTAACGCCCTGAAAACCCCAAACGGCCAATAAGGCCTAAAAAGCCTATACGCCCCAAAGGA CCCACACGGCCTAGAAAATCTAAACGCCCTGATCGGCCCTGATGGCTTAAACGACCTTAAAGGCT TAAACGCCCTAACCCTAAGCAATTGTACTACAGATTCTTTCCGAC Found at i:2948046 original size:1 final size:1 Alignment explanation
Indices: 2948040--2948057 Score: 36 Period size: 1 Copynumber: 18.0 Consensus size: 1 2948030 GTAGCTGAAA 2948040 CCCCCCCCCCCCCCCCCC 1 CCCCCCCCCCCCCCCCCC 2948058 AGTATTGTCT Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 17 1.00 ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00 Consensus pattern (1 bp): C Left flanking sequence: Indices 2947540 -- 2948039 GATATATAATCATGAAGTCCTCTGGAAGAGCTGACAAGCTTGCAAGACCATCATCAGGTTATCTT ATTACATTTATCATTTCTGTCATCAGTGCAGCGCTGTCTGGGTGGTACTATGGTAGGTACTATTT AGAAAAAGACCAGAATCTATGGATTATGTGGGATGAGTGAGTGATTAACAATTAGGTGCGTTTAA AAAATTGGTTTTTTTTAAAGATGTGCCGGGTATCGACCAAAAGTGAAAGGCATCAGATACTTTCT GGTTATGGATGACGCGGCGATTCATAGTCGGTCCCATACAATCATTAATGCAATTTCCAGAGTAA TCTTGCATACTTCCTCCAAACTCTAAAATTCCCACATTTTCAGACACTTATAAGCTTTCTCTACC CAATCATTGGTGTCTTGCTAATGGTGGAGATTCGTAGATCAGCAAAGTTTGCGGCAAAAAAGCTG AAAAGCGAGAAGAGCGCGACGGAAAGGTTGGTTTTGTAGCTGAAA Right flanking sequence: Indices 2948058 -- 2948557 AGTATTGTCTTCAACATTGATCTTCAGATACCACGCCAGCCGTATGATCCTTGTGATGACAGTCA TGTACTTCCTGGCCAGTGCGCCCATTGGAGCGCTAGACTTTATTAACGTATCCGAGATAGTTACT GAATCTTCCTTTCTACGTCTCAGCCTAGACCATAGTGCCTACCTCATGTCTGCTATATTTTGCTT GAATTCGGCTTCACATTGCATTATTAATCTCTCAATGTCTTCCGCTTACCGTAATACTATTAAGA TGAGTTGGATGAGGTCACCAAAGAGCGTTAAGATATTCACGGTATGGATTAGTTGAACCGAAGAG AGCAAAAACTGTGATTTCAGGTCACCAGGATCAAGTCTATCGGATGAAGGTCCTAGATTAAAATT AAATATGTTTTTAAAAAATTATTTGGGCTTTTGAATGAACACGAATTTGTTGTTTGAAACACCTA TGGCGTGATTCACATTGTATGACTAGTAATTGGCACCAACCACTG Found at i:2953370 original size:4 final size:4 Alignment explanation
Indices: 2953361--2953377 Score: 34 Period size: 4 Copynumber: 4.2 Consensus size: 4 2953351 CTACAAAATA 2953361 TTAT TTAT TTAT TTAT T 1 TTAT TTAT TTAT TTAT T 2953378 AAATTTATAA Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 13 1.00 ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76 Consensus pattern (4 bp): TTAT Left flanking sequence: Indices 2952861 -- 2953360 AATGCCAAGCTAAAACTATGACGATATTGAGTACCAAAATTAATTCCGCGATCTGAAAATTTTTG GAGCAAGTATTGAAAACCTCTGAGGCTTAAAAATCACCACAATCCTGATTGTTAATCCTAATAAA ATAATCATAAGTTATTTGATACATAAGGCATTTTTCATTATTGGCAAACAGCCCGGGATTGTCGT AGAGCATCACTTGCTCATTGCTCGGCGCGATGACAGCCTGAAAATTAATGTTATCTGTGCATCCG ACATTTCCCTGGACTTTTCTACAAGCTACAGTGAGCGTCCGACATCTAACTGTGGGGAAAAGGCA ATTAAAACTAGATATAAGAGATATAAGGCCTATGCCTAAGTCTAAGACTAAGCCTAAGACTAAGT CTTAGCCTAATGTAAGCCTAAGCTCAACTTACTCGAAGATTTGGAAGTAAACCTTGCTTCAAATA ACTATTTGATCTGATCAGAATTGCTGGACGAGATGCTACAAAATA Right flanking sequence: Indices 2953378 -- 2953877 AAATTTATAACATTCAACTCACCATCCAACGAGGCAACATACCGCAATTCGCCCAAAAAATACAA TCCCTCAATTTTGGTATACTGTACTTTCAACGAACCAAATATAAACTCAACATGGAAAAGCTTGT ACAAATACCGCCCGTCGTTCGCGTCCACAACCACATCACCCACAATCGACGTGCAATTTTCTGGC AAAGTGATCAATGTTTGGAAGTTGCACAGTTTTTTGAAAAGTTTTGGATTAGTCGCTTCTTCGTT TACTTCGGTTTCACAATATTTGGCTTGTAGATTTTGAAAGTTGATCACCTTGCTTTCCACAAAAA ATTGACTTCCGGAAGGGTGAGACAGAATTCTGGATGCAAGTTTTCCAGGTTCATTATGAAACGGC CGCCGAGTTTGTCGTAGAAGAACTGGAAATTTAGCATGTCACACAGCCCGGTAGGCGCCGGAACA TGAGAAATGCGCAGCCGACATGATCCTAGAAACACTGTTACCAGG Found at i:2955245 original size:6 final size:6 Alignment explanation
Indices: 2955231--2955247 Score: 27 Period size: 6 Copynumber: 2.8 Consensus size: 6 2955221 GTCTCTGATA * 2955231 AGTTCG AGTTGG AGTTG 1 AGTTGG AGTTGG AGTTG 2955248 ATCACGAGAA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.18, C:0.06, G:0.41, T:0.35 Consensus pattern (6 bp): AGTTGG Left flanking sequence: Indices 2954731 -- 2955230 CGTGCAATTTTGGTACTCGCGAATGTTATCCGTAGTGATAAGATCCCCACGGCAACCTAAATTAT CAGATAAAAGGTAAGAAATTTGAGAAAACCTTCCACAATCCTTGAAATTCCCGGAAATTTCCATA CCAATCATCTCATACATCATTCCCCGCTCGCAAAGTGTCGTTGCATCGAGAATTGGATTATTTGC CACGTGGAATGGACATTCGTTTGTTATCACTGATACAAAAAAGAAGTGATTTAAAATATCAATAT TGAATAATTTAGAATTGTTTATAATTGATATCCCATCTGAAATTGAGAAAAATATTGCAAAAAAA AAAATTATCCCGAATTTTCTAAGCTTACAATTTGCCATGCATTCCAGATTAAATTCTGCTCGGTT TTTGCTCAGAGCAATAAATGATAAGCTCTCCAGACTTGAATTTTCTACTATAAGCCCTCCAACTA ACTTGTACGTCTCTTGAAAGACCACTTTCAGCTGAGTCTCTGATA Right flanking sequence: Indices 2955248 -- 2955747 ATCACGAGAATACCGCACACGGCTTTACACTTTTTTGGGAAGAATTTGATAGTTTCGGAAGTTAG TTCGGAATGATTGAATGTGCATTTGACATCTGAAAAATTAGGAAAAAATTCGCAGATGTGGGCAT GTGGCGCAGTGGTATTTTTGATTTCTTCAGAGCAGAAGGGTACGGGTTCAATCCCCGCCAGGGTG AATCAATTTTTATTTGTTTTATTTGACGTTGAAAATGTGTCATAAACTTCCGAAAACACATAATT GCACGTTTTTCAGGAAACTGTCCAACTGGCACAGTGGTATTTTGATTTCTTTGGAGCAGAAGGTC ACGGGTTCAATCCCCGCCAGGGTGAATCAATTTTTATTTGTTTTATTTGACGTTGAAAATGTGTC ATAAACTTCCGAAAACACATAATTGCACGTTTTTCAGGAAACTGTCCAACTGGCACAGTGGTATT TTGATTTCTTTGGAGCAGAAGGTCACGGGTTCAATCCCCGAGAGG Found at i:2956014 original size:6 final size:6 Alignment explanation
Indices: 2956003--2956015 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 2955993 AGACAATCCC 2956003 AGAGAA AGAGAA A 1 AGAGAA AGAGAA A 2956016 AAAAGCAATA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00 Consensus pattern (6 bp): AGAGAA Left flanking sequence: Indices 2955503 -- 2956002 TAATTGCACGTTTTTCAGGAAACTGTCCAACTGGCACAGTGGTATTTTGATTTCTTTGGAGCAGA AGGTCACGGGTTCAATCCCCGCCAGGGTGAATCAATTTTTATTTGTTTTATTTGACGTTGAAAAT GTGTCATAAACTTCCGAAAACACATAATTGCACGTTTTTCAGGAAACTGTCCAACTGGCACAGTG GTATTTTGATTTCTTTGGAGCAGAAGGTCACGGGTTCAATCCCCGAGAGGGTGAATCAATTTTTA TTTGTTTTATTTGGCGTTGAAAATGTGTCATAAACTTCCGAAAACACATAATTTCACGTTTTTCA GGAAACTGTCCAACTGGCGCAGGGGTATATTTGACATCTTTGGAGCAGAAGGTCACGGGTTCAAT CCCCGCATGGGAAAATAATTTTTGTTTGATTTGTTAACAACAGCTAACTCACCACAAAGTTCATT TGCCCGAACTGCTTCCAAATCCTGTGCAAAATCAGAGACAATCCC Right flanking sequence: Indices 2956016 -- 2956515 AAAAGCAATATAAGGTTCATACTAAAGTGAAGTTTGAGAGCAGAATGGCGATAACTTTATGGTTG GTCGCGCGGAGCAAATTGCTAGGTAAGCAACTAGTAGTCAGTGCAAACTTTTCACATGTTTTCAG TTTCTTTAATCAAAATTGCTCAATCAAAATGCTTCTTATCACCTTATTTTTGTCGTGTGTCATGG CTGATTTCAATTACGACTTGGAGAAGTTAACGTTAACCCATAAATGTGGTAGGTAACATTTTTAT TCAAGAAAATACTAACTTTTTCAAAATATATATGAAATTCTGTACATTTCACTAGTTGAAAGTTT TTCGGTATCTCTACTCGCAGCGGAGTTATAGAGCTTTGAAGGTGATGGGTGAGAGAGTGTAGGGG AGGAGAGACGCAGGCACGTGCCTGCGTCTCTCCTCCCCCACACTCTCTTGCCTCTCAACTTTAAT GTCGCGTACCTCCTGAGTGGTTAGAGCTATCAAAAAACTTCCAAC Found at i:2957419 original size:6 final size:6 Alignment explanation
Indices: 2957408--2957509 Score: 197 Period size: 6 Copynumber: 17.0 Consensus size: 6 2957398 TTGTTCAGAT 2957408 ATAGGC ATAGGC ATAGGC ATAGGC ATAGGC ATAGGC ATAGGC ATAGGC 1 ATAGGC ATAGGC ATAGGC ATAGGC ATAGGC ATAGGC ATAGGC ATAGGC * 2957456 ATAGGC ATAGGC ATAGGC ATAGGC ATAGGC ATAGGC ATAGGC ATAGGT 1 ATAGGC ATAGGC ATAGGC ATAGGC ATAGGC ATAGGC ATAGGC ATAGGC 2957504 ATAGGC 1 ATAGGC 2957510 GTTGGCGTTG Statistics Matches: 94, Mismatches: 2, Indels: 0 0.98 0.02 0.00 Matches are distributed among these distances: 6 94 1.00 ACGTcount: A:0.33, C:0.16, G:0.33, T:0.18 Consensus pattern (6 bp): ATAGGC Left flanking sequence: Indices 2956908 -- 2957407 ATCAGTGAATTGGAGTTGCACACCGATGAGCAAACTCACGAGTGCTCGTTTCAAATCGAGAACAA CGAGAAATTGGACGCAGGCAAGCTGTGTTCCACTACTCAGTTAAATGGAATGTTCAGAGTGAGAG TGTCCGGGAATTCGAAAAACTGTGGTGAGATTGTAAAAGCTACAGCAACCCTACTGGAACCTTTT CAGGCTGCAATGGATATCAGATCAACACAGATACGCTGCACACTTTTCTAAAATGCAAAGTCACA TATGGACTAGTGCTGACAAACATTACTGAATCTGATCTTTCAGCTCTGTCCAACATTAAAGAAGT CAGAGGACTCGTTGACATTCAGATGACCAATCTCAAAAATTTATCAGTCCTCAGAAATTTGAAAG AAATCTACTCGAAAAACGGGGAATTCAATGAGAATGTGTGTTTTAATGTGCAGAATAACCCGGAG ATGACTAGGCTGGCAATGCCAGCTTTGAAGGTTTGTTGTTCAGAT Right flanking sequence: Indices 2957510 -- 2958009 GTTGGCGTTGGCGTTTGCCATTCAACCGTGATGTTTTCAGGAACTCTTCGACGCTCAGCTAGGCC CATTTATCATGAACCTGCGAGACCTTCACCCAGAATTTTGTATTACCTACGACGAAATGAAGCTG TTCATGGAGAAACGTGTGTATTTTATCAATATCGACGCGAAATATTGCACTGAAGACAGTTCGTA TTTCTCCGGTAGTTCCTGTCTGTTCACAAATATGAGCTCACTTCCCGATTATTGCAAATACATTT TTGGAGATTTAACGATTGGCGCCGGAGATGAGGGATTCGTTGTTAAATTGACGAAAGTGTCACAT TTGTTCGGGTCCCTGACAATACGGAATACTCTTTTGGAGGATATCGAGTTTTTATCGCAACTGGA GTTTATCGCAGTGCTCGATAATGTTGATGTCATTCAAATTGTATCGAATCAGAATTTGAACTTTG TGTATTTTCCGTGGATGAGTGTGAGTACTGTAGTCTGACGTCGTA Found at i:2957516 original size:6 final size:6 Alignment explanation
Indices: 2957507--2957524 Score: 36 Period size: 6 Copynumber: 3.0 Consensus size: 6 2957497 CATAGGTATA 2957507 GGCGTT GGCGTT GGCGTT 1 GGCGTT GGCGTT GGCGTT 2957525 TGCCATTCAA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 12 1.00 ACGTcount: A:0.00, C:0.17, G:0.50, T:0.33 Consensus pattern (6 bp): GGCGTT Left flanking sequence: Indices 2957007 -- 2957506 ACTCAGTTAAATGGAATGTTCAGAGTGAGAGTGTCCGGGAATTCGAAAAACTGTGGTGAGATTGT AAAAGCTACAGCAACCCTACTGGAACCTTTTCAGGCTGCAATGGATATCAGATCAACACAGATAC GCTGCACACTTTTCTAAAATGCAAAGTCACATATGGACTAGTGCTGACAAACATTACTGAATCTG ATCTTTCAGCTCTGTCCAACATTAAAGAAGTCAGAGGACTCGTTGACATTCAGATGACCAATCTC AAAAATTTATCAGTCCTCAGAAATTTGAAAGAAATCTACTCGAAAAACGGGGAATTCAATGAGAA TGTGTGTTTTAATGTGCAGAATAACCCGGAGATGACTAGGCTGGCAATGCCAGCTTTGAAGGTTT GTTGTTCAGATATAGGCATAGGCATAGGCATAGGCATAGGCATAGGCATAGGCATAGGCATAGGC ATAGGCATAGGCATAGGCATAGGCATAGGCATAGGCATAGGTATA Right flanking sequence: Indices 2957525 -- 2958024 TGCCATTCAACCGTGATGTTTTCAGGAACTCTTCGACGCTCAGCTAGGCCCATTTATCATGAACC TGCGAGACCTTCACCCAGAATTTTGTATTACCTACGACGAAATGAAGCTGTTCATGGAGAAACGT GTGTATTTTATCAATATCGACGCGAAATATTGCACTGAAGACAGTTCGTATTTCTCCGGTAGTTC CTGTCTGTTCACAAATATGAGCTCACTTCCCGATTATTGCAAATACATTTTTGGAGATTTAACGA TTGGCGCCGGAGATGAGGGATTCGTTGTTAAATTGACGAAAGTGTCACATTTGTTCGGGTCCCTG ACAATACGGAATACTCTTTTGGAGGATATCGAGTTTTTATCGCAACTGGAGTTTATCGCAGTGCT CGATAATGTTGATGTCATTCAAATTGTATCGAATCAGAATTTGAACTTTGTGTATTTTCCGTGGA TGAGTGTGAGTACTGTAGTCTGACGTCGTACGCCAAAAAATCCTT Found at i:2958193 original size:6 final size:6 Alignment explanation
Indices: 2958182--2958196 Score: 30 Period size: 6 Copynumber: 2.5 Consensus size: 6 2958172 CCTGAAAATA 2958182 TTTAAT TTTAAT TTT 1 TTTAAT TTTAAT TTT 2958197 TTTTTCTCTT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73 Consensus pattern (6 bp): TTTAAT Left flanking sequence: Indices 2957682 -- 2958181 TATTGCACTGAAGACAGTTCGTATTTCTCCGGTAGTTCCTGTCTGTTCACAAATATGAGCTCACT TCCCGATTATTGCAAATACATTTTTGGAGATTTAACGATTGGCGCCGGAGATGAGGGATTCGTTG TTAAATTGACGAAAGTGTCACATTTGTTCGGGTCCCTGACAATACGGAATACTCTTTTGGAGGAT ATCGAGTTTTTATCGCAACTGGAGTTTATCGCAGTGCTCGATAATGTTGATGTCATTCAAATTGT ATCGAATCAGAATTTGAACTTTGTGTATTTTCCGTGGATGAGTGTGAGTACTGTAGTCTGACGTC GTACGCCAAAAAATCCTTGTCTTTCAGGTAATTATCACAAGGTACAACCGTACTGTAGTTATTGA TAAAAATCCAAAACTAACGTCTCCCGAGTTGTCAATTTTCAATGTGCAATATGCTACGCGCATTG CAATTGTTGGAGATTCCCTAGGTAAGGGTTTTTTACCTGAAAATA Right flanking sequence: Indices 2958197 -- 2958696 TTTTTCTCTTCAGAATACTCATCCAAAACTTCCCGACCATTCTGTTTTATTGCCTTGTTTTTAAT TTTTTTTTTTGGATTTTGAATAAAATATCGTTTATTTTTTAACTTTGAGCACCTGTATCTTTGCA GCGGTAGGAGAAGAATCTCTTGAAAAATTGCTCGTCAGTTGACAATTTTTTGATAGTTCTGGTTC TGCCCACTTTTTGCTCTTTTGATTTTTGACCACTTCTTGCCACTTTCATTTTTGACCAGCTTGCT TTTTCGGACTTCAACAAAAAACACAACAAACATGATACATATCACCTAATAACTAGTTGAGTTTC TCTGGGCAATTATTGGTTTTCCGCCGCCACTTCTGCTCAACTTTTTTCCACTGTTGTCACAAGCT TTTGCCTCCCTCAAAAATGGGCCAAGATTGGACTTTCACCGAATACTACTATGATGATATGAGCC ACCCGGAAAATGCAAGGCTCAGAACATTCAGTGAAATTATCGCAA Found at i:2961561 original size:6 final size:6 Alignment explanation
Indices: 2961552--2961580 Score: 58 Period size: 6 Copynumber: 4.8 Consensus size: 6 2961542 TAGGCCGCGC 2961552 CCTATG CCTATG CCTATG CCTATG CCTAT 1 CCTATG CCTATG CCTATG CCTATG CCTAT 2961581 TTCTACGCCT Statistics Matches: 23, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 23 1.00 ACGTcount: A:0.17, C:0.34, G:0.14, T:0.34 Consensus pattern (6 bp): CCTATG Left flanking sequence: Indices 2961052 -- 2961551 ACGTTTCAGAACCATTGGTAACATTCTGAAAAATTTTGGAAGGTTCTAAAAAGTTTTGAAACGTT CTAATGAACGGTCTCATAAAATCAATGAATTTTGGAAATTTCTTAAAAAATTTGAAAACTTCTAG AACGTTTTGGAACGTTCTTTAACATTCTGAGAAACTCTGTAAGAATCAGAAAATTTCTGGAAACT TTAGAAGTATTTCTGGAAAAACATAAAACTTGTTCACTTTCTGTAGATGATCGCCGCGTTCTTTC TCCCAATCTTGGCAATAGCTCTGGTCAGACGTCTGCGGCAAGCGGCTGAATCAAGGAAGCACCTG TCAAACAGTAAACCACTACAAACTGATAAATCCATTCGTATGGTCACTTTTATGACCCTATTCTC TGTATTTGCCGAGGGACCAATGGGCATTTTCTCTTTTATTCGGTCATTCTACTTGCGGTTCTCAT CGATAGAGTGAGTTGGGAGACATACTCGATAGGCCTAGGCCGCGC Right flanking sequence: Indices 2961581 -- 2962080 TTCTACGCCTTACGCCTCATTTTTCCAGAGCAAGTGTGGAAAGCCTTGATAAAATGCTTATCAAC TTAGTGATAGTCAACGTCATCGCCCATTGTTTTATTAGTATGCAAATGTCGTCACAGTACAGGGA TATCGCAACGCAGCTGTTTTTGAGGAAAGTTATTCGGAGATGGAAGAAGGATCGGGTGAGTTGAT CGTGTTGATTTTTTTTTTCATTTTTTAACTTCAGGTCAGCGTTGTTCCGCAAGCTGAGATGTCCT TAACACATGGCCCAACAAATGTTCATGTTTTGTCGTAATGAAGATGTTTTAGTTTTTTTGCAATA TTTGAGCAGCCGACGTTATATGGGCCTTTACCTTTTTTTTAAACCCTACGTATCTGCAACGGCTA CAGTTATCGAAAAGTTATCAACTAGCAAAATATAGAGCTTGAAATTCTCTATATTTGGCTAGTTA ACAACTTTTCTCTATCTTTTGCCGTTATGAAGATATAAGCGTTTG Found at i:2963211 original size:5 final size:5 Alignment explanation
Indices: 2963201--2963217 Score: 34 Period size: 5 Copynumber: 3.4 Consensus size: 5 2963191 GGCTCAAAAT 2963201 TTAAA TTAAA TTAAA TT 1 TTAAA TTAAA TTAAA TT 2963218 TTTTTCATAC Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 12 1.00 ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47 Consensus pattern (5 bp): TTAAA Left flanking sequence: Indices 2962701 -- 2963200 CCACTATACTCTAGGCCGTCTGCGTCTCCGGTGTCGTCATGCTCTCTCGTCAGGGCAATAATGTT GCCTAAAGAAGGGAAGGACAACGGAATGGAACAAAACGCAATTTTTTTTCTCTTTTTTTCTCCTT TTTTTCTCCTTTTTTCTATTATTTTTTGTTGTGTTCATAGGCAAGAGCTTTTCCTTTTTTTTGCG GAGAAAAATATCCTTTTGTTGCAATTTTTCGGCGTAAAAGTGTAAAAAATGACTGAGAAATTGTT CGTTTTCTAGTTATGACGTCACAGCTTGAGTCAATTAGTAGGCGGAGTCTTCTGGGCTCCGCCCA TTTATTGGTCAAGTATTTTCTTTTTTAAATGCTGATGTAACTGTTGATAGGGATTTTTTTTTAAT TTTTAAGCAATTTTTTGGAAACTTTTGAAAGTAAAATTTTAAATTTCTGTAAAAATTTTTTTGAA TTCAATTTTTTTTCAAAAAATTTTTAACAAATGTTGGCTCAAAAT Right flanking sequence: Indices 2963218 -- 2963717 TTTTTCATACCATTTTTGGCGCGAAATTCAAATTTTAAATTCATATAATCGGCTTTTCCTGATTT TTTTCCTGAAATTATTATTATTATATTTTCATTTGAAAAGCTCACAACTCATTCATAAATCCCAA TATTCATCATCAATTAAACACAAAAAAAACATGATTTCCTTTTTTGTTGAACCACTGAATTAATG TTAATACCCCCATGGTGGATTAGTAGTGGTCGAATGTTGAAAAAAAAAAAAACCTCAAAAGCGGA AAATTATTTTTTTTTTCAAACCACGTTTTTTTCAATTAGAAAGGTTTTTTCCCTGTTTGCCTACC ATTGCCTACCTGCCTATTCCTACCTGTCTATGCCTACCTGCCTATGCTTAGCTATCTATGCCTAC CTGCCGTTGCCTACCTATCTGCGCCTACCTGCCTATACCTACCTGCCTATGCCTACAAGCCTAGC ATTTCTTCTCCGATTCTGGTGAATAGCACATGATCAATCATATTT Found at i:2963299 original size:3 final size:3 Alignment explanation
Indices: 2963293--2963306 Score: 28 Period size: 3 Copynumber: 4.7 Consensus size: 3 2963283 TTTTCCTGAA 2963293 ATT ATT ATT ATT AT 1 ATT ATT ATT ATT AT 2963307 ATTTTCATTT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 11 1.00 ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64 Consensus pattern (3 bp): ATT Left flanking sequence: Indices 2962793 -- 2963292 GGAACAAAACGCAATTTTTTTTCTCTTTTTTTCTCCTTTTTTTCTCCTTTTTTCTATTATTTTTT GTTGTGTTCATAGGCAAGAGCTTTTCCTTTTTTTTGCGGAGAAAAATATCCTTTTGTTGCAATTT TTCGGCGTAAAAGTGTAAAAAATGACTGAGAAATTGTTCGTTTTCTAGTTATGACGTCACAGCTT GAGTCAATTAGTAGGCGGAGTCTTCTGGGCTCCGCCCATTTATTGGTCAAGTATTTTCTTTTTTA AATGCTGATGTAACTGTTGATAGGGATTTTTTTTTAATTTTTAAGCAATTTTTTGGAAACTTTTG AAAGTAAAATTTTAAATTTCTGTAAAAATTTTTTTGAATTCAATTTTTTTTCAAAAAATTTTTAA CAAATGTTGGCTCAAAATTTAAATTAAATTAAATTTTTTTCATACCATTTTTGGCGCGAAATTCA AATTTTAAATTCATATAATCGGCTTTTCCTGATTTTTTTCCTGAA Right flanking sequence: Indices 2963307 -- 2963806 ATTTTCATTTGAAAAGCTCACAACTCATTCATAAATCCCAATATTCATCATCAATTAAACACAAA AAAAACATGATTTCCTTTTTTGTTGAACCACTGAATTAATGTTAATACCCCCATGGTGGATTAGT AGTGGTCGAATGTTGAAAAAAAAAAAAACCTCAAAAGCGGAAAATTATTTTTTTTTTCAAACCAC GTTTTTTTCAATTAGAAAGGTTTTTTCCCTGTTTGCCTACCATTGCCTACCTGCCTATTCCTACC TGTCTATGCCTACCTGCCTATGCTTAGCTATCTATGCCTACCTGCCGTTGCCTACCTATCTGCGC CTACCTGCCTATACCTACCTGCCTATGCCTACAAGCCTAGCATTTCTTCTCCGATTCTGGTGAAT AGCACATGATCAATCATATTTTCTGTTCCTTTTGTCGGTTTGTACCAGTTCTTTTTCCCATTCAT ACCCTTTTTTTCAATGAAAACCTTCTGATTTTTTCCCACACTATC Found at i:2963458 original size:1 final size:1 Alignment explanation
Indices: 2963452--2963464 Score: 26 Period size: 1 Copynumber: 13.0 Consensus size: 1 2963442 TCGAATGTTG 2963452 AAAAAAAAAAAAA 1 AAAAAAAAAAAAA 2963465 CCTCAAAAGC Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 12 1.00 ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00 Consensus pattern (1 bp): A Left flanking sequence: Indices 2962952 -- 2963451 GAAATTGTTCGTTTTCTAGTTATGACGTCACAGCTTGAGTCAATTAGTAGGCGGAGTCTTCTGGG CTCCGCCCATTTATTGGTCAAGTATTTTCTTTTTTAAATGCTGATGTAACTGTTGATAGGGATTT TTTTTTAATTTTTAAGCAATTTTTTGGAAACTTTTGAAAGTAAAATTTTAAATTTCTGTAAAAAT TTTTTTGAATTCAATTTTTTTTCAAAAAATTTTTAACAAATGTTGGCTCAAAATTTAAATTAAAT TAAATTTTTTTCATACCATTTTTGGCGCGAAATTCAAATTTTAAATTCATATAATCGGCTTTTCC TGATTTTTTTCCTGAAATTATTATTATTATATTTTCATTTGAAAAGCTCACAACTCATTCATAAA TCCCAATATTCATCATCAATTAAACACAAAAAAAACATGATTTCCTTTTTTGTTGAACCACTGAA TTAATGTTAATACCCCCATGGTGGATTAGTAGTGGTCGAATGTTG Right flanking sequence: Indices 2963465 -- 2963964 CCTCAAAAGCGGAAAATTATTTTTTTTTTCAAACCACGTTTTTTTCAATTAGAAAGGTTTTTTCC CTGTTTGCCTACCATTGCCTACCTGCCTATTCCTACCTGTCTATGCCTACCTGCCTATGCTTAGC TATCTATGCCTACCTGCCGTTGCCTACCTATCTGCGCCTACCTGCCTATACCTACCTGCCTATGC CTACAAGCCTAGCATTTCTTCTCCGATTCTGGTGAATAGCACATGATCAATCATATTTTCTGTTC CTTTTGTCGGTTTGTACCAGTTCTTTTTCCCATTCATACCCTTTTTTTCAATGAAAACCTTCTGA TTTTTTCCCACACTATCTATCAATTGATAGATCTATGGAGGTATATTGTAGTTTTATAGAACATA TTTGAAAAAAAAATTGTTTTTGAAAATGTGGAAATTTTGCCTACCTGCCTATGCCTAACTGCCGG CATCTACCTGCCTCTGCCTACCTGCCCAAGCCTAACTGCCAATGC Found at i:2964016 original size:6 final size:6 Alignment explanation
Indices: 2964005--2964017 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 2963995 CGAGCCTATC 2964005 TGCCAA TGCCAA T 1 TGCCAA TGCCAA T 2964018 TTGCCTATCC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.31, C:0.31, G:0.15, T:0.23 Consensus pattern (6 bp): TGCCAA Left flanking sequence: Indices 2963505 -- 2964004 TTTTTCAATTAGAAAGGTTTTTTCCCTGTTTGCCTACCATTGCCTACCTGCCTATTCCTACCTGT CTATGCCTACCTGCCTATGCTTAGCTATCTATGCCTACCTGCCGTTGCCTACCTATCTGCGCCTA CCTGCCTATACCTACCTGCCTATGCCTACAAGCCTAGCATTTCTTCTCCGATTCTGGTGAATAGC ACATGATCAATCATATTTTCTGTTCCTTTTGTCGGTTTGTACCAGTTCTTTTTCCCATTCATACC CTTTTTTTCAATGAAAACCTTCTGATTTTTTCCCACACTATCTATCAATTGATAGATCTATGGAG GTATATTGTAGTTTTATAGAACATATTTGAAAAAAAAATTGTTTTTGAAAATGTGGAAATTTTGC CTACCTGCCTATGCCTAACTGCCGGCATCTACCTGCCTCTGCCTACCTGCCCAAGCCTAACTGCC AATGCCTCATGCCTACCTGTCTATGCCGACCTTCCCGAGCCTATC Right flanking sequence: Indices 2964018 -- 2964517 TTGCCTATCCTTTCAAGGCTCACCTGACTATGCCCTCCGGCCTATGCCTACCTGCCTATGCCTAC CTACCTATGCTTACTTAAATATGCCTATCTGCCTGTGCACACCTGCCTATTCCTCCCTACCTTTT CCTACCTGCCTATGCCCACCTATCTATGCCTACCTGCCTTCGCCTATCTGCCTACCTAAAAAATA TTAAAAAATTTGTTGAAAATTTTATAGTTCCCGCCAATTTTTTTAATTTAGAAAACTCGAATTTT GCGCCAAAATTTTTTTTCAAAAAAAAAATTGATTTTCAGACAAAAATAGTGATAAATTGATTTGA AATCTTAAAACTTTGTCATTTTTGCTGGAAAATTCTAGTTTCTGACCAATAAGTTTTTATATAAA ATTTTAAATTTCCCGCTGAAAAAATAACTTTCCAGTTCCCTCCCGTCCTAAAGTGTGCTCAAAGT GAGCGTGAAAAAGATGTAGGAAACAAGAAACGAGAGAGAAAATAA Found at i:2966275 original size:6 final size:6 Alignment explanation
Indices: 2966264--2966276 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 2966254 GTAATTTTTA 2966264 ATGCCT ATGCCT A 1 ATGCCT ATGCCT A 2966277 CCTACTTAAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.23, C:0.31, G:0.15, T:0.31 Consensus pattern (6 bp): ATGCCT Left flanking sequence: Indices 2965764 -- 2966263 CCTAGTTAACATGGCTAGGCTCACCAGGACCAGCTTGGACAAGGCTTGTTAGCTTGGGCCTGTAA GTTGGCCTGGGCAGGGGTACATTTGTGTGGGACTCAAAGTTTGTTCAAGCGGGCCTGAGTCGGCC TGCCCGAGTTTTCTCTGATCTGGGCCTGGTAGGCCTAAGCAAGCTAATATTTTCAAGTCAGGTAG GCACAGGTAGGTAGGCATAGCCAGGTAGGCATAGGGAGGTAGGCATAGGGAGGTAGGCATAGGTA GGCAGTAAGAATCATTTTCAAATTTTTCCACAAATGGTCCGACTTTTTTTTCTGAAATTTCTCAT GTATTTTTAGAATTTTTCAGTACTTCTTTCGTGTATATTTCAGAGAGTGTATCTGATTCTTCTTT GAGATTTCCTGAAATTTCGAAAAATTCGCGAATTTCTGAGATATATTTCATAGTTTCCAGAAAAC TTTTTGCATTGTTTTTTCAACAATTTGAAAAAATAGTAATTTTTA Right flanking sequence: Indices 2966277 -- 2966776 CCTACTTAATTCTACCTCCATATGTTTACCTGTTATGCCTACCTGCCTATGCCTACCTGCCTATG GCTGCATGCATTTGCCTACCTGCTTGTACCTAACTGCCTATGACCATCTGCCGTCGTCTACCTGC CTATGCCTACCTGTCTGTGCCTACCTGCCTATGCCTACCTGCCTATGCATACCTGCCTATGCCTA CCTGCCTATGCCTACCTGCCTATGTCTTTCTGCTATGCACACCTGTTATACCTACCTGCCTATGC CTACCTGCTTATGCCTACCTGCCTATGCCTAATTACCTATGCCTAACTGCCCATGTCTAAATACT TATGTCTATCTGCCTAGGGCTACCTGCCTATGCCTATCTGCCTATTCCTACCTGCCTATGAATAC CTTCCTATGCCTACCTGCCTATGCACACCTGTTATACCTACCTGCCTATGCCTGCCTGCCTATGC CTACCTGATATACCTACCTTCCTATGCCTTTCTGCTATGCACACC Found at i:2966722 original size:4 final size:4 Alignment explanation
Indices: 2966715--2966727 Score: 26 Period size: 4 Copynumber: 3.2 Consensus size: 4 2966705 TACCTGCCTA 2966715 TGCC TGCC TGCC T 1 TGCC TGCC TGCC T 2966728 ATGCCTACCT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 9 1.00 ACGTcount: A:0.00, C:0.46, G:0.23, T:0.31 Consensus pattern (4 bp): TGCC Left flanking sequence: Indices 2966215 -- 2966714 AAACTTTTTGCATTGTTTTTTCAACAATTTGAAAAAATAGTAATTTTTAATGCCTATGCCTACCT ACTTAATTCTACCTCCATATGTTTACCTGTTATGCCTACCTGCCTATGCCTACCTGCCTATGGCT GCATGCATTTGCCTACCTGCTTGTACCTAACTGCCTATGACCATCTGCCGTCGTCTACCTGCCTA TGCCTACCTGTCTGTGCCTACCTGCCTATGCCTACCTGCCTATGCATACCTGCCTATGCCTACCT GCCTATGCCTACCTGCCTATGTCTTTCTGCTATGCACACCTGTTATACCTACCTGCCTATGCCTA CCTGCTTATGCCTACCTGCCTATGCCTAATTACCTATGCCTAACTGCCCATGTCTAAATACTTAT GTCTATCTGCCTAGGGCTACCTGCCTATGCCTATCTGCCTATTCCTACCTGCCTATGAATACCTT CCTATGCCTACCTGCCTATGCACACCTGTTATACCTACCTGCCTA Right flanking sequence: Indices 2966728 -- 2967227 ATGCCTACCTGATATACCTACCTTCCTATGCCTTTCTGCTATGCACACCTGCCTATGCCTACCTG CCTATGCCTACCTGCTTATGCCTACCTACCTATGCCTAATTGCCTATGCCTAACTGCCCATGTCT AAATACTTATGTCTATCTGCCTAGGGCTACCTGTCTATTTCAATCTGCCACTGCCTACCTGCCTT TGACTACCCGCCTATTCCTGCCTGCCTATGACTACCTGCCTATGCCCACCTGCCCATGCCTACCT GCCCATGCCTACCCGCCTATGCCTACCTGCTTATGCCTACCTGCCTATGCCTACCTGCCTTACAT GCCCCTGAAGTCCTTAACATGTTCTATCTAATAAATACACATATGGTCAAGTCCCCCCGGCCGGC CGGGAAAAGTCGAAAATGCGCTCCACTTGAAATGTTGTTCCCGTCCGTCCTATATATGTTTCTAT TCTCGCCCCCCCCCTCTCCTGCCCCCCGTCCAAATCCTCTTTGCA Found at i:2967460 original size:1 final size:1 Alignment explanation
Indices: 2967456--2967468 Score: 26 Period size: 1 Copynumber: 13.0 Consensus size: 1 2967446 TTTTTCTGCG 2967456 CCCCCCCCCCCCC 1 CCCCCCCCCCCCC 2967469 ACCGCTTATA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 12 1.00 ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00 Consensus pattern (1 bp): C Left flanking sequence: Indices 2966956 -- 2967455 ACCTGCCTATGCCCACCTGCCCATGCCTACCTGCCCATGCCTACCCGCCTATGCCTACCTGCTTA TGCCTACCTGCCTATGCCTACCTGCCTTACATGCCCCTGAAGTCCTTAACATGTTCTATCTAATA AATACACATATGGTCAAGTCCCCCCGGCCGGCCGGGAAAAGTCGAAAATGCGCTCCACTTGAAAT GTTGTTCCCGTCCGTCCTATATATGTTTCTATTCTCGCCCCCCCCCTCTCCTGCCCCCCGTCCAA ATCCTCTTTGCAGACGGGGGTTGTATTTGTTCGTTTTTTGTCAAAAAAATTTTCCTCTCTTTCTC TAGCCCACTCTCTCGATTTCCTATACTATTTTTTTCGCAAGAGTTTCGTTTTCTGTTTGTATAAA CAGACAGTGTCTGTTCCCACATAACCTCTTAAATTTTTGTGTTATTTTTTTCTATTTGAAACACC AAAACCACCACCCGAAATTTTATGTATCAAATGGTTTTTTCTGCG Right flanking sequence: Indices 2967469 -- 2967968 ACCGCTTATAGGCTGCCTATAAACGTGTCTAGTAGTAAGTGTATGTAGGTTGATCGAGGATTACT GTAGGGAATTATGCGGACGCTGGAGACGGGCAAATCTTTGCAAATGACTTGAGCATATAAGTCTT CTCTAGAAGGCTTCCGTGGAAGGCACGCCCTGCCTTCTTTGAAATGTCATGAATTTTCCAATTTT CGAACGGTTTTTTTTTCGAAAATTTTTCGAATTTCTAAGATTCTGAGATTTCTGAATTTCTGAGA CTTTCATAGTTTCCAGAACTTTTTTTAATATTCTTTTTTTCAAAATCTTGAATTTTTAATGCCTA TGCCTACCTGCCTATGCCTACCTGCCTATTCCTACCTGCCTATTCCTACCTGCCTATTCCTACCT GCCTATGCCTACCTGCCTATTCCTACCTGCCTATGCCGGCCTTCCTATGCCTACCTTCTTATGCC TACTTGCCTCTGCCTACCTGTCTATACCTACCTGTCTATACCTAC Found at i:2968746 original size:6 final size:6 Alignment explanation
Indices: 2968737--2968750 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 2968727 GTTTTTTTTT 2968737 TTGAAA TTGAAA TT 1 TTGAAA TTGAAA TT 2968751 TTTAGAATTA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43 Consensus pattern (6 bp): TTGAAA Left flanking sequence: Indices 2968237 -- 2968736 GCACAAAAATTCTGTAAATTTAGTAAGAACTGGTTTTTTTTCTGAAATTTGACAATTTTTGGTAT GATTTTTAATTCTCCCAAAATTTGAAATCCCTGTTTTAGGATGTTTAGACCAACTTTTTTCAAAA ATTTTTTTTTTCGAACTTTTCAAAATTTTTTTTTTCAATTTTTTAAGAAATTTCAAAATTCCCCA TCCCCTCTTCACCTACATATATTTCATGAAACATACATTTTGTACTCCCGGAGGAAGTCAATGGG GGTTTAATGCAAAGTACACAAACACTTATTGAACCTCACTACCTACCGTACGGAACATTTTTACG GGCGGCCCAGCGGCCGGGTGAGACCACTTGTTTGTTGCAACATGAATATACTATTCACTAACAAA TGGAAAATCGACGGAGGGTATAGTTAAATTGTTTGAAGTGAGGGAGGAGAGGAAGTGAAGTTTTT GAATTCCCGCCGCCGCCCCCCTTGAAATGGAAAATGTTTTTTTTT Right flanking sequence: Indices 2968751 -- 2969250 TTTAGAATTAAAAAAAAATTTTTTTTTGAAATTTTCAATTTTTTTTTGGAATTTTCAGAACTTGA ACTTTCTGTTGAAAAAACCTTTTTTTGGGAATTTTGAAGGTTTAAGTATTGGAAAAAAATTCGGA TTTTTCTCGTATTTCCGAGATTGACTGAAATTTAGGTCCGAATTTTAGGTTTTTTCGAAATTTTT TTTGTAATGATTTTTGTAACGAATTTGTTCAATTGTTTGATTAGTTGGATTTTTCAGCATGTTCA ACTTTTCAAAAATTAAAATATCTGAAACAGTAAAAAATTTTGAAATTAAAAAAAAATTTTTTTCG AATTTTTGACTATTTTTTAAAATTAAAATTCTGAAACTGACTTTTCAGCGAGATTTTTTTGTATT TTCCCGTTTTTGTCACTGACTTTTATATATATATATATATATATATATATATATATATTTTATAT ATATATATATATATATATATATATATATATATATAAATTTCGGAA Found at i:2969103 original size:6 final size:6 Alignment explanation
Indices: 2969092--2969105 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 2969082 TGACTATTTT 2969092 TTAAAA TTAAAA TT 1 TTAAAA TTAAAA TT 2969106 CTGAAACTGA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43 Consensus pattern (6 bp): TTAAAA Left flanking sequence: Indices 2968592 -- 2969091 TTTGTTGCAACATGAATATACTATTCACTAACAAATGGAAAATCGACGGAGGGTATAGTTAAATT GTTTGAAGTGAGGGAGGAGAGGAAGTGAAGTTTTTGAATTCCCGCCGCCGCCCCCCTTGAAATGG AAAATGTTTTTTTTTTTGAAATTGAAATTTTTAGAATTAAAAAAAAATTTTTTTTTGAAATTTTC AATTTTTTTTTGGAATTTTCAGAACTTGAACTTTCTGTTGAAAAAACCTTTTTTTGGGAATTTTG AAGGTTTAAGTATTGGAAAAAAATTCGGATTTTTCTCGTATTTCCGAGATTGACTGAAATTTAGG TCCGAATTTTAGGTTTTTTCGAAATTTTTTTTGTAATGATTTTTGTAACGAATTTGTTCAATTGT TTGATTAGTTGGATTTTTCAGCATGTTCAACTTTTCAAAAATTAAAATATCTGAAACAGTAAAAA ATTTTGAAATTAAAAAAAAATTTTTTTCGAATTTTTGACTATTTT Right flanking sequence: Indices 2969106 -- 2969605 CTGAAACTGACTTTTCAGCGAGATTTTTTTGTATTTTCCCGTTTTTGTCACTGACTTTTATATAT ATATATATATATATATATATATATATATTTTATATATATATATATATATATATATATATATATAT ATATAAATTTCGGAATTGATTTCATACGTTTTTGGAAACTTTTGGCAATTTTTTGGCAATTTTAC AATAATTTTGAAAATTTCAAAAAAAAAATCCGGGATTTTTTTTCAATTTTAAGGTTTTTTTTTCA AATTGAAATATATTAATTAATTTGGTATACAATTTTCTTCAAAAAAAAATTTCAAAAATGTTGCC AAATTTAAGTTACAAAAACATGGTGCATCGATCAGGAGAACATTATTTGTACTTTTTATATATTT TTTGGCCCTTTTTTATCATTTTTTTTCTGGCAATTGGCAGATTTTTTCGGGTTTAATTCCATAAG TTTTTGGCAATTTTGGCCAATTTCTCCAAGTTTTTCACAGCTTCC Found at