TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_II Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15279311 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:2335633 original size:8 final size:8 Alignment explanation
Indices: 2335617--2335637 Score: 35 Period size: 8 Copynumber: 2.6 Consensus size: 8 2335607 TTATGGAATT * 2335617 AATTGTTG 1 AATTATTG 2335625 AATTATTG 1 AATTATTG 2335633 AATTA 1 AATTA 2335638 AAATTGTTAT Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 12 1.00 ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48 Consensus pattern (8 bp): AATTATTG Left flanking sequence: Indices 2335117 -- 2335616 ATTTTTGCTCACCAAGATAATGCTCAAGAAGATTATGATCACCATAGCAACTGAGCTCTATCGCT GAGCTGGCTCCGCGGCTCTCCTCATTCCATCTCCTTTGGGTGCCTACGGAATGTGCGCCCTCCTT TTTTCTCTACTATTGATTTTATGTTAATTTCTACTAAACTTTGCTGGTTTTAATTATTCTCGACA GGTCGAATAAATGCTTGAGCAAAAAAAAACTTTTATTTTAAAAGTTTCAAGGTGAGCAAAACTTG CTAATATCCTTAATATTTTTTTCTGTATTCCAGACTCGGCTACAACTCCCACCGTCAGACACGTC ATAGTAACTTACTTCTTCAATTATATCAAATTTTTAAAAAATTTTATTTTTTCATTTCTGCTCTT GTGCACCATCGTCCTAAAAAAAAGTGAGTTATTTTTCTGGAAAATGTTTCTTTTGTGTTCCGATT TTTACGAGTTTTTTTTTCAGAAATTGGTGATCTCGTTATGGAATT Right flanking sequence: Indices 2335638 -- 2336137 AAATTGTTATAATAAATTGTTTTTTGTTTTGGTTTTGTTCCGCAAATTTTTTACCATATGGTATG ACGTCATAGGGTTGTGACGTCACTACTAAAAAGCGAGGGTCTCCTTTTTCATATTAGAAATAATT TCAAGTAGAAATTGGAGCAAACAAGTGAATTTTGGGAAATTGACATGTGAATTGGTTATCTAAAG AATAGCACGAGTGAGGAAGCAACGACCTTGATAAGAGTGTAGTTTCAATTTCATTTTCTAATTTC TGTCGACTGGCCAGTAAAATAAACAAAATTCGAAAAAAAAATGTCGTTTCTGAAATGCGGAGTTT GCACCGAGGACTATTCAAATGTGATCACAAATCGGCATCCCAAGAATTTGAGTGAGTTTTGACTT GAGACCACTATTGCATAGCTTACGCTAAAAAATGTTCCAAGTTGCGTTGGGCTCCGTCCAAATTT AAAATGTAATAGGCCCATGATTAGCCCAAGAATATCATCTTACTA Found at i:2335666 original size:7 final size:7 Alignment explanation
Indices: 2335654--2335667 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 2335644 TTATAATAAA 2335654 TTGTTTT 1 TTGTTTT 2335661 TTGTTTT 1 TTGTTTT 2335668 GGTTTTGTTC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86 Consensus pattern (7 bp): TTGTTTT Left flanking sequence: Indices 2335154 -- 2335653 ATCACCATAGCAACTGAGCTCTATCGCTGAGCTGGCTCCGCGGCTCTCCTCATTCCATCTCCTTT GGGTGCCTACGGAATGTGCGCCCTCCTTTTTTCTCTACTATTGATTTTATGTTAATTTCTACTAA ACTTTGCTGGTTTTAATTATTCTCGACAGGTCGAATAAATGCTTGAGCAAAAAAAAACTTTTATT TTAAAAGTTTCAAGGTGAGCAAAACTTGCTAATATCCTTAATATTTTTTTCTGTATTCCAGACTC GGCTACAACTCCCACCGTCAGACACGTCATAGTAACTTACTTCTTCAATTATATCAAATTTTTAA AAAATTTTATTTTTTCATTTCTGCTCTTGTGCACCATCGTCCTAAAAAAAAGTGAGTTATTTTTC TGGAAAATGTTTCTTTTGTGTTCCGATTTTTACGAGTTTTTTTTTCAGAAATTGGTGATCTCGTT ATGGAATTAATTGTTGAATTATTGAATTAAAATTGTTATAATAAA Right flanking sequence: Indices 2335668 -- 2336167 GGTTTTGTTCCGCAAATTTTTTACCATATGGTATGACGTCATAGGGTTGTGACGTCACTACTAAA AAGCGAGGGTCTCCTTTTTCATATTAGAAATAATTTCAAGTAGAAATTGGAGCAAACAAGTGAAT TTTGGGAAATTGACATGTGAATTGGTTATCTAAAGAATAGCACGAGTGAGGAAGCAACGACCTTG ATAAGAGTGTAGTTTCAATTTCATTTTCTAATTTCTGTCGACTGGCCAGTAAAATAAACAAAATT CGAAAAAAAAATGTCGTTTCTGAAATGCGGAGTTTGCACCGAGGACTATTCAAATGTGATCACAA ATCGGCATCCCAAGAATTTGAGTGAGTTTTGACTTGAGACCACTATTGCATAGCTTACGCTAAAA AATGTTCCAAGTTGCGTTGGGCTCCGTCCAAATTTAAAATGTAATAGGCCCATGATTAGCCCAAG AATATCATCTTACTAGATCCGGACAGTTTAACAAGAGTTTGGCCA Found at i:2339254 original size:7 final size:7 Alignment explanation
Indices: 2339242--2339258 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 2339232 AATTTTCAGC 2339242 TCGAAAA 1 TCGAAAA 2339249 TCGAAAA 1 TCGAAAA 2339256 TCG 1 TCG 2339259 CGTGAAATTC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.47, C:0.18, G:0.18, T:0.18 Consensus pattern (7 bp): TCGAAAA Left flanking sequence: Indices 2338742 -- 2339241 TGGTAGATCCGTGCATCCATATTTGTCGTTAAAAAATCAATATCGATGACTTGCTCCGATTGCTG AGCCATTGTGTTGAGCCGATCGAGCATTTTCTTGATTCCAATGATTTTTAGTGGGAAATCGAGGA AGATGTACTGAAAAATAAAATTTCCAGTATTAAAATTGAATTTCGGGTATATTTTTTAGTCTAAA TTTCAATTTTTAGCTCGAAATTCAAAAATCGCGTGAAATTCGGTGCTTGCGTACTTTTGGCGCTA CCGTAACGCGGAAAATTTTAAAATTGAACTAGAATGGTCTAGTTTTTGAGGTTTAGCATGAAATT TTATGAGAAATTCAATTTTGAGAAGAAAATTTCAAAATAAGTTCCAAGATTTGAATGCGTCGCGG TCGCGTTGAGGCTCAAAATTGAATTCTCGGTGTTAGGATTTTTTCTCCGCATTTTCCTTATCAAA TTCGAATTCTCCGTAATTTTCTTAGTTTAACCATGAATTTTCAGC Right flanking sequence: Indices 2339259 -- 2339758 CGTGAAATTCTGTGTTTCTGGGGGTACTGTAGTCGGTGTTCGCGTATCTCTGGTGCTACAGTAAC CCTTAAAATTTCAAAATTGAGCTAGAGAGCTCTAGTTTTCGGCTGCCTTAGTAAAATTTTGTGTA GATTTCAGATTTGACTATAAAAATTGGAAATTATCTGAATATCTAACAATATCTGACAACTTTCA GACAACAAGTTTAGTTTTTGGGGCTCAAAAGTTGTTATAATGAATTTTTTATTTAAATGTCGAAT TCCACATAATTATCTCAGCTTAACCCCTAGCTTTCAGCAGAAAATTTAAAAATCGCGTAAAATTC TGTTTTTCTGGGAGTACTGTAGTCGGTGTCTGCGTACTTTTGGCGCTACAGTAACCCTTGAAATT CCAAAATTGAGCTAGCGAGCTCTAGTTTTTCAGTATCAAACTGAAATTTTGTGAGGAATTTGAAA TTGGCAAGGAAAAGTGTAAATTCGTGCCAAATTTTTTGAATTTTT Found at i:2339441 original size:10 final size:10 Alignment explanation
Indices: 2339426--2339447 Score: 37 Period size: 10 Copynumber: 2.2 Consensus size: 10 2339416 AAATTATCTG 2339426 AATATCTAAC 1 AATATCTAAC * 2339436 AATATCTGAC 1 AATATCTAAC 2339446 AA 1 AA 2339448 CTTTCAGACA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.50, C:0.18, G:0.05, T:0.27 Consensus pattern (10 bp): AATATCTAAC Left flanking sequence: Indices 2338926 -- 2339425 TTTAGTCTAAATTTCAATTTTTAGCTCGAAATTCAAAAATCGCGTGAAATTCGGTGCTTGCGTAC TTTTGGCGCTACCGTAACGCGGAAAATTTTAAAATTGAACTAGAATGGTCTAGTTTTTGAGGTTT AGCATGAAATTTTATGAGAAATTCAATTTTGAGAAGAAAATTTCAAAATAAGTTCCAAGATTTGA ATGCGTCGCGGTCGCGTTGAGGCTCAAAATTGAATTCTCGGTGTTAGGATTTTTTCTCCGCATTT TCCTTATCAAATTCGAATTCTCCGTAATTTTCTTAGTTTAACCATGAATTTTCAGCTCGAAAATC GAAAATCGCGTGAAATTCTGTGTTTCTGGGGGTACTGTAGTCGGTGTTCGCGTATCTCTGGTGCT ACAGTAACCCTTAAAATTTCAAAATTGAGCTAGAGAGCTCTAGTTTTCGGCTGCCTTAGTAAAAT TTTGTGTAGATTTCAGATTTGACTATAAAAATTGGAAATTATCTG Right flanking sequence: Indices 2339448 -- 2339947 CTTTCAGACAACAAGTTTAGTTTTTGGGGCTCAAAAGTTGTTATAATGAATTTTTTATTTAAATG TCGAATTCCACATAATTATCTCAGCTTAACCCCTAGCTTTCAGCAGAAAATTTAAAAATCGCGTA AAATTCTGTTTTTCTGGGAGTACTGTAGTCGGTGTCTGCGTACTTTTGGCGCTACAGTAACCCTT GAAATTCCAAAATTGAGCTAGCGAGCTCTAGTTTTTCAGTATCAAACTGAAATTTTGTGAGGAAT TTGAAATTGGCAAGGAAAAGTGTAAATTCGTGCCAAATTTTTTGAATTTTTTACAAATTTTCCAA GTTTTTCAACAAAAAAACTTACATGCTTAGCCAACCCCAACTGAAAATCGTCCATAAAATCCATA TTACAAATCGCGAGCATTTTCTCTCCATTATTCACTTGTACCCGTTCTCTTTCCAGCACAGTTTT GTCATTTGTTATTAGATATTCCGAAAACGTTCCGAATATAGTTTT Found at i:2342268 original size:9 final size:8 Alignment explanation
Indices: 2342250--2342267 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 2342240 GAATGGGAAA 2342250 TTGTGGTT 1 TTGTGGTT * 2342258 TTGTGGGT 1 TTGTGGTT 2342266 TT 1 TT 2342268 TAAGTAGTTT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.00, C:0.00, G:0.39, T:0.61 Consensus pattern (8 bp): TTGTGGTT Left flanking sequence: Indices 2341750 -- 2342249 AATTGGTACGGTAATTTGGCAAAAAAAAGGGAAAATGCAAAAAAAAAACTATCTAAAAAAACTAA AATCTGGAGAAAATGGCAACAAATATTTTAAAAGTTCAGAAAATCTCTGTAAATTTGCCAAAAAA CTTCCAAACTAGCCAAAAACACATCTACTGAAAATCTAAAAAAAATAATTTTTGGTGAGAAATGT CGAAAAAAAAAGGTGCCAAAAATTACGAAAACTGCCCGAAAACCACTTGAAAAGTAGTGTAAATC AGGTAGAAGTTGGCGAAAATTTACAGAAATTTGGCGAAAGTTGGCGAAAATTGGAGAATTTCTGA AGTTTCTCATAGAAATCTACCTATTTTTTCAATAATTCTTCTAAAAAGTCGATAACTTTCCACTT TCTCACCCTCAATGCACCATGTGCCCCCCGCTAAACGACACTCCGCTCTCCCGTCAGCGGTGCGT GCTGTTTATCGTAAATCCACACAGCAGGGGAATTTGAATGGGAAA Right flanking sequence: Indices 2342268 -- 2342767 TAAGTAGTTTTTATTGGTTTTTAATAAAATTTTCAATGACTACTAATGCGAAAAGAAGTTTTGAA AGAAAAATCGTGAAAAATTCAGAGAAAATCGATAAAAATTAGGATTTTTTTTGTAAAAATACCAA AAATTATGAAAAATTTTACGAATTTTCATCAATTTCAGCAATGTTCCTACTCGATTTTTTATTTC TCGTCTCCTGGATTCTTCTTCTACTCGGCATATTCATTTTAACTCGGGAAGCCGTATTCCAATGG CATAAATCTGAAAATTTATCAATTTTTGGAGCATTTCTAGTTACCATGTAAGGTTTTCAGAGAGA AAATTTGCAATGAAAAACAAAAAAATTTTTAGGATAATATTTATCGAAGCAATTCTGATGTTGGA GGAGCATAAATGGAAAGATGGTGGGTTTTTTTTGTATATTTCAAAATTTTTTCTGAGGTTTTTTA CAAAGAAATTCGAATTTTCCGTCACTTTATTAGTCTACCGATGAA Found at i:2343329 original size:7 final size:7 Alignment explanation
Indices: 2343317--2343330 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 2343307 GAATTTCACG 2343317 CGATTTT 1 CGATTTT 2343324 CGATTTT 1 CGATTTT 2343331 TCAGCTGAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.14, G:0.14, T:0.57 Consensus pattern (7 bp): CGATTTT Left flanking sequence: Indices 2342817 -- 2343316 TTTGGCGCTACCGTAACCCTCGAAATTTCAAAACTGAGCTAGAAAGCTCTAGTTTTTGATTTTTA GACTGAAATTTTATGTGGATTTCAAATTTGAAAGTTAAAAATTCTGAAAAATCTCAGAATTTCCA ACAAATCAATTATTTTCAGACACCTTATCTAATCAGCTGCTCCGGTGGATGTTTGGCAAGGCAGA AAGTACACATTGGAAATGGCATGTGAATCCAGTTACAGTACCTTTTAGTCTACTTGGACGGATTA TAATATTGTGTGCTTCAGTAGTAAGTTTTAGATATTTTGAAGAAAACTGAAATCTCGAGTTTTCC AAGAAAACCAGAAGTTTTTGTGTAATTTTAGTGCAAAATCTGAAAACCTTATAAAATTTCAGGCT AAGCACAAAAAACTAGAAGCTTCTAGCGCAATTTTGAAAATCCCGGGTTACGGTAGCGCCAAAAG GACGCAAACACCGACTACAGTACACCAGAAACACCGAATTTCACG Right flanking sequence: Indices 2343331 -- 2343830 TCAGCTGAAAACTCACGGATATACAAAGTGAACAGCGGAGAATTCAAATTTAATAATGGAAATTC AATCTAATAGTGTTTGCGTATTTTTGGGGCTACAGTAACCCAAAAAAAACAAATTCAAATTCAAA ATCAAGCTAGAGACTTCTAGTTTTCTGTGTTTAAGCTGAAATTTTATGCAAAATTCGAATTTTTG CTTTAAAAATTTAAAAACTATATTTTCAGTTCGGTGAATCGTGTGGAAAACTAATTGGCCGCTTC ATCGCAGAGCTTCCACTTGCCACGTCACTAGTGATGGTTCCATTCTCATTTTTGTGCATTTTCCT TGGAATCTTTTGTATTTTTGGATATCAATTTAATATTGGTTATGGATTTCTGAAAGTTGAACGCA ATAATCGTCTGAAATCGATTTTCAAACCATCGGATACGGCGGGAAATTCGTCAAAAAAATTGGAG AAATGCATTTCAAAAATTGATTTTTGCGTGAAGAAAGTTAATGAA Found at i:2343540 original size:8 final size:8 Alignment explanation
Indices: 2343527--2343542 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 2343517 GAATTTTTGC 2343527 TTTAAAAA 1 TTTAAAAA 2343535 TTTAAAAA 1 TTTAAAAA 2343543 CTATATTTTC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38 Consensus pattern (8 bp): TTTAAAAA Left flanking sequence: Indices 2343027 -- 2343526 ATGGCATGTGAATCCAGTTACAGTACCTTTTAGTCTACTTGGACGGATTATAATATTGTGTGCTT CAGTAGTAAGTTTTAGATATTTTGAAGAAAACTGAAATCTCGAGTTTTCCAAGAAAACCAGAAGT TTTTGTGTAATTTTAGTGCAAAATCTGAAAACCTTATAAAATTTCAGGCTAAGCACAAAAAACTA GAAGCTTCTAGCGCAATTTTGAAAATCCCGGGTTACGGTAGCGCCAAAAGGACGCAAACACCGAC TACAGTACACCAGAAACACCGAATTTCACGCGATTTTCGATTTTTCAGCTGAAAACTCACGGATA TACAAAGTGAACAGCGGAGAATTCAAATTTAATAATGGAAATTCAATCTAATAGTGTTTGCGTAT TTTTGGGGCTACAGTAACCCAAAAAAAACAAATTCAAATTCAAAATCAAGCTAGAGACTTCTAGT TTTCTGTGTTTAAGCTGAAATTTTATGCAAAATTCGAATTTTTGC Right flanking sequence: Indices 2343543 -- 2344042 CTATATTTTCAGTTCGGTGAATCGTGTGGAAAACTAATTGGCCGCTTCATCGCAGAGCTTCCACT TGCCACGTCACTAGTGATGGTTCCATTCTCATTTTTGTGCATTTTCCTTGGAATCTTTTGTATTT TTGGATATCAATTTAATATTGGTTATGGATTTCTGAAAGTTGAACGCAATAATCGTCTGAAATCG ATTTTCAAACCATCGGATACGGCGGGAAATTCGTCAAAAAAATTGGAGAAATGCATTTCAAAAAT TGATTTTTGCGTGAAGAAAGTTAATGAAGGATATCAGAAAACAATTGAGAAGCTGAAAAATTGAA ATTCGATTTTTTAAAGAATATTTTATGGGTTTTGTAAATAAATAAACGGTTCTAATTTCAATTTT CTGTTAAATGTATTTTTCAAGCAAAATTGGTGAATAGTTAGACAAGAGTAATAAGCCAAAGTAGA TCCCGTTCTTGTGTAACTGGATTTCCAACAAGCTAATGTCTCAAT Found at i:2345568 original size:8 final size:8 Alignment explanation
Indices: 2345555--2345571 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 2345545 AGTTTCTAGC 2345555 TTCTAAGA 1 TTCTAAGA 2345563 TTCTAAGA 1 TTCTAAGA 2345571 T 1 T 2345572 AGTTTCTCAG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41 Consensus pattern (8 bp): TTCTAAGA Left flanking sequence: Indices 2345055 -- 2345554 ATTTCAAAATATCTTTAAAAAATGAATATTTTAACTATATTTCTAATTATTCCATGTTTGCTGCA TGCGAATGGTTCCGCCGGATGAAGCCTATATTCCGAGCACATTGGCTCCTAAGATGAGCACCCAA GCTCCTGAGGAAAGTACAATGGGTGTTGATACCACAATGGCCGGTGATAAAACAACTGAGGTAAA TAATATTTATTGAAAGATTCATAGTAATTTCCTGGGAAATCCTCAATTTATTTTTTAAAGGAAGT GATAGAAATGACAACACCCGCAATGGAGTCTTCAACCATGACAGGTGACTTTTTTTAAAAATAAA CTAATATTTTAATTTCAGTTGGTTTCAGAAAAAGAATGCCCGGTTAGTGCAGCCAAGTGTCCAGA TTTGGCGACAGTGGTCAAAGGTGAGATTTGTGGCCCATACTGATAAAAATATCGATGAAAATTGT TTTTTTTTTTTTTGAAATGAAATTCATGAACTTTTAGTTTCTAGC Right flanking sequence: Indices 2345572 -- 2346071 AGTTTCTCAGAAGTTTCAGTTCGCACCAAATTTTTTTCAATCTTCATCACCGATGTACTTTTTTT TACTGGAATTTCAGCTAGCGTGGTCATAATGACTGACTCGGGCGGCTGCATTGAGCTCTCGTGAA AGACTGGCGATAGTCCGGTTGCTATTGGCTCATTTGCGGAAAGTGAAATACCACCGCCTACCGAA GCTGACGTAGGACTTAAATTTGTAAGTGATATCACGATTTTTCCGTAAAAATGAAACTTTTACAG TCAATTTTACCCCCAGCTACACCGGAACAAATTGCACTCGGGTTAAATGCATTTTATGGGCTTGT ATGTGATAGTAATAAATTGACGGCCACAGAGTATCCACGTGGAATTATCACTTATACCGGTTCCG GTACTCACGGAGCAGATGGATCATACAGAGGAAAGAGATCGGCTCTAAACGAACTCGCTTGCGAT TGATATCTTAGATTAAATGAGGAAAACATGTGTATTGATAATTGG Found at i:2346241 original size:8 final size:8 Alignment explanation
Indices: 2346228--2346246 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 2346218 TTTGAATATG * 2346228 AAACGACA 1 AAACGAAA 2346236 AAACGAAA 1 AAACGAAA 2346244 AAA 1 AAA 2346247 GTTATGTGAA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.74, C:0.16, G:0.11, T:0.00 Consensus pattern (8 bp): AAACGAAA Left flanking sequence: Indices 2345728 -- 2346227 GGCTCATTTGCGGAAAGTGAAATACCACCGCCTACCGAAGCTGACGTAGGACTTAAATTTGTAAG TGATATCACGATTTTTCCGTAAAAATGAAACTTTTACAGTCAATTTTACCCCCAGCTACACCGGA ACAAATTGCACTCGGGTTAAATGCATTTTATGGGCTTGTATGTGATAGTAATAAATTGACGGCCA CAGAGTATCCACGTGGAATTATCACTTATACCGGTTCCGGTACTCACGGAGCAGATGGATCATAC AGAGGAAAGAGATCGGCTCTAAACGAACTCGCTTGCGATTGATATCTTAGATTAAATGAGGAAAA CATGTGTATTGATAATTGGTGATATTTTAAGTTTTTGGAATAAAGTTAGAAGCGTCTCCCCTCGT TTTTGGTGGAATTAAATAAATGTATTTTGTTGGAAATTTGTAATTTTTTCAACATTTTTCTAATT TAGTAGTAAATTAAGTAGTAAAAACTCTTTTTGGTTTTGAATATG Right flanking sequence: Indices 2346247 -- 2346746 GTTATGTGAAATAATAAGACTAGAGAATCCAATGGGATCACTATAGTCCAATGTCGAAAAATGAT TTTTGCATTCTATAATATGTATAAAAATGTTATTTGAGTGGAATTTAGCTTCAGCTCGATTTTTC AACCGCTAAGTTTTATATCGAAAATAATGAAAACAAAGCGATTTCAATGGGTCCAAACTATTCAT TTCTTAATCTAAACTACGGCAATACGCCAGACAAGAGTGATAAGCCAGGGTAGATCCCGTTCTTG TGTAACTAGATTTCCAAGAAACCACTGTCACAGAGATAAGATAAACAGAGATTGACGGGGAGATC ACAATAGAAACGCTATTCTTGTTTACAAATGATCCCCATGATAAAGTTCAAGACGACTATTAAGT CATAATACTTTGATTTTTTTATCTGTTAAATCTGAGCTACTTCCTACATCTCAGGCTTACCGTAT CAAGAATTCGGGTTGAGATATCAAGAAACACAGAAATTCGTTGTA Found at i:2348024 original size:10 final size:10 Alignment explanation
Indices: 2348009--2348029 Score: 35 Period size: 10 Copynumber: 2.1 Consensus size: 10 2347999 AATATTCTAG 2348009 AAATTTCAGA 1 AAATTTCAGA * 2348019 AAATTTTAGA 1 AAATTTCAGA 2348029 A 1 A 2348030 CGCTCCACGA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.52, C:0.05, G:0.10, T:0.33 Consensus pattern (10 bp): AAATTTCAGA Left flanking sequence: Indices 2347509 -- 2348008 GAACCAACTGTCCAGCTTTGTCCAGCCCTGTAATCTGGAGTGAGCTACTGTAGAAGGGCCGCACA TTGCTAAAAAAAACCGAACCCACAAAAAAACTATCATAACTTTGACACCTGACAAGCTACAAAAA TGTTAAACATATTCTCCAACTAAAATTTATGGCAATATAAATGTTACCAGCCGTTCGCACGCGCT AAAGCGCGTGCTCCGACTGGCGTACTCGAAATTAAAATGAAATTCTAGAAATTTTAAGCGCTTCT CTGCAGATGGGACGTTTTTTCTCAGTTTTCCAGATGTTTTTAAAGCAACATGAATATTATATGAC TAAGTGTTCAAGAGTTACAACTTTAAAAAACTCTAGTTTCCTGGAACTACTTCTGAATTTCATGA ACGTTTCTAGATATTCTTCATGTCATATGATCGTATGAAATTTTTCCTTTTATTTACATTTTTAA GTTCATGGCATTTATACAACTTTTGATCTTTTTAAAATATTCTAG Right flanking sequence: Indices 2348030 -- 2348529 CGCTCCACGAACTTCTTTTCTTTTGACTTTTCCAGAAGATCATTCCAGAGTTTTGTTGAATTTTT TAGAAAGTTCTGGAACATTTCAGACAATTCTTGAATTTTCTATAGCGATTTAGAACATTCCAGAA TTTTCCCGATTTTTCTAGAAAGTTCTGGAATATTCCAGAATTTTCTCGATTTTTCTAGAAAGTTC TGGAACGTTCCAGAATTTTTTCGAAAATTCCAGAATTTTAGAATTTTCAGAAAGTTTGAATTTCC CACCAAAACATTTTTTTCAGAAAATTTAAATATCCCACCAAAATATTTTTCACTAAAAATTTGAA TTTCCCGCCAATTTTTTTCACTAAAAATTTGAATTTCCCGCCAATTTTTTTCACTAAAAATTTGA ATGTCCCGCCAAATTTTTTCACTAAAAATTTGAATTTCCCGCCAAAATTTTTTCACTAAAAATTT GAATTTCCCGCCAAAATATTTTTCACTAAAAATTTGAATTTCCCG Found at i:2351089 original size:7 final size:7 Alignment explanation
Indices: 2351079--2351092 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 2351069 ATTTTCAAAA 2351079 AAATTTT 1 AAATTTT 2351086 AAATTTT 1 AAATTTT 2351093 TTTGAAAAGT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57 Consensus pattern (7 bp): AAATTTT Left flanking sequence: Indices 2350579 -- 2351078 CTCCAATGGTCTCAAAATGACCAAATATCTTGATAAAACTTTTCAAAAAAATTTTGAAACTTTTT AATTAACTGTCAAAAAGTGGCAATTACTCAGTTTTTGTTTTTACCACTCATAATTTTGGAAGTCG ACCAAAAAAATGTTCTTCTACATTTTTTTAATGTTTTAATTGCGTTCAAATTATTTGTATTGAAA CATTGTAAATTTCCTCAAAAGCTCGTATTTTTCAAAATTTTAGCAATTTGCCAAAACTTTGACCA GAAATTATGAAAAATCTAAAATTTTTTGGAGTATTTTATTATGATATTCGGTTGTTTTGGATAAT TTTAAGTGCATTTAGACAAAATCCCCACTGGCGCTACTCCACCTTTAATACGATTAATTAAAATA GAATTGAAGTATCAAAAATGTAGAAAAAAAAGAAGTTTTTTGGTCGACTTCCAAAATGGCAAAAA CTAAGCAATTGTCACTTTTTGACAATAAATAAAAAATTTTCAAAA Right flanking sequence: Indices 2351093 -- 2351592 TTTGAAAAGTTTTATTGTTATATTCGATCATTTTGGCACACTGGCACTACTCCACCTTCCAAGCT CAGTCAGGTAAAAGTCTTTGACCTAGGTATGATAACCAGCTTGTTGGAAAATGTGCATAGAAGAG CTTACCATTTTTGCGTTTTCCTGCCTCTTCCAACTCCTTGATCCGTTTTTCCAGTTTCTCCACTT TATCCTTTAATTCCAACACCATCTGCTCCAAATTAAAGCTCTTACTTTCTTTTTTCTGTGTTTTC GTTTTGAATTCCCTGACCAAGCTTACACTGGCTAGTCTTCTAGTGTATTCTTCTTCCGTAAACTC TGACTTTTGACGTTGTATAGAACGCATCCTTAGGCAATCGGAAAATGTCTCATCTTTCTGATCCT TCCGTTCTAACACGATATCCTTGAAATCAATGGTCATCCACTGTCTTTTTCCCATCTTGTATCAC CTTTCCGTACAAATTGTATATGGATCTCTTCAAAATTAGCATTAG Found at i:2355925 original size:7 final size:7 Alignment explanation
Indices: 2355913--2355926 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 2355903 TCTAACAAAA 2355913 TTCAGTT 1 TTCAGTT 2355920 TTCAGTT 1 TTCAGTT 2355927 CCACCGCACA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.14, G:0.14, T:0.57 Consensus pattern (7 bp): TTCAGTT Left flanking sequence: Indices 2355413 -- 2355912 GACCGTTGGTTCACGCATCGTTCGAAAACACCGAATTGCCAAAACCTACTGATATAATCCAAGAC ACTTTTGTAAGTGACTTCATAACTGCATGCTTAAAAAAAAAATTAATACAAATGCGCTATCTACA GATCATTGTTGCACGATATTCATGGGGACAAGTGGAAGACATGCTTAGTCAATTTGGAATTGAAT GTGATGGCGATAAGTGGAAGGTCACCAAATATCTTTTGGGAATTCATTATGCGACTCCAGATAAA GAATTCAGAAATCTTGGCAGAGATGGTTCATATGACGGAATGAAAACTGAAGTAATGCAAATGAC CTGGTGAGTGTCCTCAGAAAAGATATCTTAAAATCGGAAGGCAAAATCAAAAATGTGAAATGAAA TCAGAAATTTTGAAACCTTGAAAACCCTTTAAAGAAGATTTGTACGACACGCGCCTAATAGATAG TTGGACAAAGATTCAATCGTTTTATGTTATAGTATTCTAACAAAA Right flanking sequence: Indices 2355927 -- 2356426 CCACCGCACATCTACCTGGAGATTGACTATCACTTGAAACTAATAAATGATAAATCAATGTTACT TTCGAATGAAGCATGTTTTTTAAAACGTCCCTCCTAGTTTCGACTGTAAGATTCGACGGAATTCT GCACCAACGACGCCAGTTTCCGATTCAATCCGGTTCTAAGATTATTGGTACTTGCTTCGAGTAAT TTTAGTCTCAAAAGACAAAAAGTGCAACTGATAATATTAAAAATCCTGTTCTCTCTTTGCTGACA CAAGAAAAACTGAAGAATTATTTTTCTGGTAGCCTTTGGATCAAAACTACACCTAGTTAGTTATC AGGGTGGGCCAGTGGTTGATCAGCTTTTTGGAAATTGGAAAATTCATTGTTTAGGGTTCTGTCTT ATAGCCTCTAATTATATTGGCTTTTATTAAACAGTATCTTAAATGGAAGATTGTAAATTCAAGAG ATCTATCAGTGATAATGATTTTCTCAACAAAAAAAATTGCCGACT Found at i:2356291 original size:7 final size:7 Alignment explanation
Indices: 2356279--2356292 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 2356269 GATCAGCTTT 2356279 TTGGAAA 1 TTGGAAA 2356286 TTGGAAA 1 TTGGAAA 2356293 ATTCATTGTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29 Consensus pattern (7 bp): TTGGAAA Left flanking sequence: Indices 2355779 -- 2356278 CAAAATCAAAAATGTGAAATGAAATCAGAAATTTTGAAACCTTGAAAACCCTTTAAAGAAGATTT GTACGACACGCGCCTAATAGATAGTTGGACAAAGATTCAATCGTTTTATGTTATAGTATTCTAAC AAAATTCAGTTTTCAGTTCCACCGCACATCTACCTGGAGATTGACTATCACTTGAAACTAATAAA TGATAAATCAATGTTACTTTCGAATGAAGCATGTTTTTTAAAACGTCCCTCCTAGTTTCGACTGT AAGATTCGACGGAATTCTGCACCAACGACGCCAGTTTCCGATTCAATCCGGTTCTAAGATTATTG GTACTTGCTTCGAGTAATTTTAGTCTCAAAAGACAAAAAGTGCAACTGATAATATTAAAAATCCT GTTCTCTCTTTGCTGACACAAGAAAAACTGAAGAATTATTTTTCTGGTAGCCTTTGGATCAAAAC TACACCTAGTTAGTTATCAGGGTGGGCCAGTGGTTGATCAGCTTT Right flanking sequence: Indices 2356293 -- 2356792 ATTCATTGTTTAGGGTTCTGTCTTATAGCCTCTAATTATATTGGCTTTTATTAAACAGTATCTTA AATGGAAGATTGTAAATTCAAGAGATCTATCAGTGATAATGATTTTCTCAACAAAAAAAATTGCC GACTTTTTTCCATTAGCCGCACAGCCGTGACAATGAAAACCAACCAAACGTCAAACACCAAGTAA ACGTTGTGAAAAACCAAGAAAACCTAGCTACCGAGCCTTCCGGCTACATCACCGAAGAACGTACC CCCGTAACCATCTACCGCATAATTCTCCGACCAGCTAGGATCACATTCAATGGGGATAGAGTAGT TACAGATAACGTTCAAGGAACTAGTGATGCTGTTGAAATGGAGTCATGGACATTGAATAAGAGCC CTACTATTGATGGATCTTTTGTTCAACAAGGAGCTTTTCATTGATATATTCGTTTTTAATAAAAC ATTCTGAAAACTTCAGTTTTTTTTTGTGTAGTGTGTGAACTTAAA Found at i:2357556 original size:8 final size:8 Alignment explanation
Indices: 2357543--2357562 Score: 40 Period size: 8 Copynumber: 2.5 Consensus size: 8 2357533 TCAATTTTTT 2357543 GGAAAAAC 1 GGAAAAAC 2357551 GGAAAAAC 1 GGAAAAAC 2357559 GGAA 1 GGAA 2357563 CATTTTCATT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 12 1.00 ACGTcount: A:0.60, C:0.10, G:0.30, T:0.00 Consensus pattern (8 bp): GGAAAAAC Left flanking sequence: Indices 2357043 -- 2357542 ATGATAATCACTTGCTATAAAAGCCCAGCCCAGATCCCAGAGGAACAAGGACGATGTACTTCAAA ATGCACTTTTTCATGTTTATGACTCTGTGTTTGTTCGGCCATGCCCGTGCCGAATGTCCAATCGA CACGTTTACACAGGAAACAACTTCCAGTTCTGCTAAGGTATGATTTTTGACCGAAGATTTCAACA AAAAGAAAAAAAATCACATTTTTAGGTCTGTCTGGAGACCTACACTCCAGAGTGTGGAAATTTGA CATCACTTTTCATCAGTAGGTTTTTTTTATAACAAACTAAATCACTGATCGAATAATCACTTTTT TCTGGCACACCACCTAACTTCAGAACCTGATAAGATACAAATGTAAAATCTAGTTAAAATTAAAA TAATCTTTGTTTGGAAAACCCAAACTAAAAAAAACGTTTTTTTCGCTCGTTTCAAAAATCAGAAA TCCGCAAAATAGAACAATTCGAACAGCTAAAAATTTCAATTTTTT Right flanking sequence: Indices 2357563 -- 2358062 CATTTTCATTTTTTCAATTTTTAAAACAAGATTGAGAATCCACCGTCACAAACCATTCGATTTTA GTCTAACAGCGTTGTTGTTATTTCGTATGCATTTCAGATGAACAAGACATAGAAACCTTTGAACA AGATGGATGTACTGTGTTAAAATGTCCTGCAGGCGAAAGACCGTGGTTTATGTCATCGTTCGAAA ACAGTGAATTTCCAAAACCTACTGCTGAAAAGCCAAGTAATAATAACGCCATTGTGAGTGATCTT TTCATAACTGCACGCTTTTTTAAATTTAGTACAAATAATATATCTACAGGACATCAACGCACCAC GTTCAACAGAACATGTGGAACAAACGTTTAGTCAATTTGGAATTGAATGTGATGGCGATAAGTGG AAGGCCACCAAATATCCATTGGGAATTCATTATCTGACTACAGATTATGAAACAATTAATCTTGG CATTGATGGCTTATATGACGGAATGAAATCTGAAGTAATTAACAT Found at i:2357584 original size:9 final size:8 Alignment explanation
Indices: 2357565--2357584 Score: 33 Period size: 8 Copynumber: 2.5 Consensus size: 8 2357555 AAACGGAACA 2357565 TTTTCATT 1 TTTTCATT * 2357573 TTTTCAAT 1 TTTTCATT 2357581 TTTT 1 TTTT 2357585 AAAACAAGAT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.15, C:0.10, G:0.00, T:0.75 Consensus pattern (8 bp): TTTTCATT Left flanking sequence: Indices 2357065 -- 2357564 GCCCAGCCCAGATCCCAGAGGAACAAGGACGATGTACTTCAAAATGCACTTTTTCATGTTTATGA CTCTGTGTTTGTTCGGCCATGCCCGTGCCGAATGTCCAATCGACACGTTTACACAGGAAACAACT TCCAGTTCTGCTAAGGTATGATTTTTGACCGAAGATTTCAACAAAAAGAAAAAAAATCACATTTT TAGGTCTGTCTGGAGACCTACACTCCAGAGTGTGGAAATTTGACATCACTTTTCATCAGTAGGTT TTTTTTATAACAAACTAAATCACTGATCGAATAATCACTTTTTTCTGGCACACCACCTAACTTCA GAACCTGATAAGATACAAATGTAAAATCTAGTTAAAATTAAAATAATCTTTGTTTGGAAAACCCA AACTAAAAAAAACGTTTTTTTCGCTCGTTTCAAAAATCAGAAATCCGCAAAATAGAACAATTCGA ACAGCTAAAAATTTCAATTTTTTGGAAAAACGGAAAAACGGAACA Right flanking sequence: Indices 2357585 -- 2358084 AAAACAAGATTGAGAATCCACCGTCACAAACCATTCGATTTTAGTCTAACAGCGTTGTTGTTATT TCGTATGCATTTCAGATGAACAAGACATAGAAACCTTTGAACAAGATGGATGTACTGTGTTAAAA TGTCCTGCAGGCGAAAGACCGTGGTTTATGTCATCGTTCGAAAACAGTGAATTTCCAAAACCTAC TGCTGAAAAGCCAAGTAATAATAACGCCATTGTGAGTGATCTTTTCATAACTGCACGCTTTTTTA AATTTAGTACAAATAATATATCTACAGGACATCAACGCACCACGTTCAACAGAACATGTGGAACA AACGTTTAGTCAATTTGGAATTGAATGTGATGGCGATAAGTGGAAGGCCACCAAATATCCATTGG GAATTCATTATCTGACTACAGATTATGAAACAATTAATCTTGGCATTGATGGCTTATATGACGGA ATGAAATCTGAAGTAATTAACATGGCCTGGTGAGTGTCCTCAGCA Found at i:2361757 original size:8 final size:8 Alignment explanation
Indices: 2361740--2361757 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 2361730 GCTTTTGGTC 2361740 AATTTCTG 1 AATTTCTG * 2361748 AATTTTTG 1 AATTTCTG 2361756 AA 1 AA 2361758 AATAATCTTC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.33, C:0.06, G:0.11, T:0.50 Consensus pattern (8 bp): AATTTCTG Left flanking sequence: Indices 2361240 -- 2361739 CCATCTTGTTCAATAATCTCCATTGGGTCTGTGAGCTCGTGGATTATGAGAAATTGTTCTACAAC AAGCAAAGGCTTACCTTCGATGTACGGGGTCCACGCTGGACACATGGACTCTTCGCAAACTTTTT CTGAAACCTGTTCATTTTTAGAGAATATTTTTAATTGACAAATTTACCGGTCTCGGTTGATGTCT CCATCGCAAGTGTCGTCATCATTTCCTAAAATAAAGAGATAGGGGCGGGCGTGGGCAACTTATCT GATTGGTCAGCGCTACAGAGTGATAAAATGCAGGCCAGTGTTGAAAAGTTCATAGCTTGAAGTAT TCAGGCAAAAAAATTTGCAACTAAAAACACTGGCATCTCAGAACCAAGCACAGTAGTGTATAATT TTTAGTTGATTTTCGAAAAGAACATAGTAGAAAACCTTTAGATGCCTCTAACAATAAAAAAGAAC CACTTCATATGATTTTGACGTACTTTTAGAAAAAAGCTTTTGGTC Right flanking sequence: Indices 2361758 -- 2362257 AATAATCTTCCGTACGAGCTACTATCAAAATTTATGAATCGATCCTTCGATTTTGCAAAAATCTT TGCCGCACAGAAAGTTGGGCGGAGCGTCCTTTCGCAACACTGCCGCGCGGGGTTTGCCCCCGGCC CTTTTCCGCTGCTTTTCTTGTTGATTTTTTCAATAAAGTTTCGATTTTTCTTTTTTTTTTTCAAA TTGGATAACATTTTCATTCGAAAAAAAAAGAAAAATCGAAAATTTATTGAAAAAATCAACAAGAA AAGCAGCGGAAAATGGCCGGGGGCAAACCCCGCGCGGCAGTGTTGCGAAAGGACGCTCCTCCCAA CTTTCTGTGCGGCAAAGATTTTTGCAAAATCGAAGGATCGATTCATAAATTTTGATAGTAGCACA ATTTGTTTGGTATTTTCTGGTACATTTGACTATGCTGAACAGTTTTATAAAATAAAAAAGAATGA CTTCATATAATTTTGAGGTACTTTTGAATTTTTGAATATATCAGC Found at i:2362247 original size:8 final size:8 Alignment explanation
Indices: 2362234--2362249 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 2362224 TTTGAGGTAC 2362234 TTTTGAAT 1 TTTTGAAT 2362242 TTTTGAAT 1 TTTTGAAT 2362250 ATATCAGCTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.25, C:0.00, G:0.12, T:0.62 Consensus pattern (8 bp): TTTTGAAT Left flanking sequence: Indices 2361734 -- 2362233 TTGGTCAATTTCTGAATTTTTGAAAATAATCTTCCGTACGAGCTACTATCAAAATTTATGAATCG ATCCTTCGATTTTGCAAAAATCTTTGCCGCACAGAAAGTTGGGCGGAGCGTCCTTTCGCAACACT GCCGCGCGGGGTTTGCCCCCGGCCCTTTTCCGCTGCTTTTCTTGTTGATTTTTTCAATAAAGTTT CGATTTTTCTTTTTTTTTTTCAAATTGGATAACATTTTCATTCGAAAAAAAAAGAAAAATCGAAA ATTTATTGAAAAAATCAACAAGAAAAGCAGCGGAAAATGGCCGGGGGCAAACCCCGCGCGGCAGT GTTGCGAAAGGACGCTCCTCCCAACTTTCTGTGCGGCAAAGATTTTTGCAAAATCGAAGGATCGA TTCATAAATTTTGATAGTAGCACAATTTGTTTGGTATTTTCTGGTACATTTGACTATGCTGAACA GTTTTATAAAATAAAAAAGAATGACTTCATATAATTTTGAGGTAC Right flanking sequence: Indices 2362250 -- 2362749 ATATCAGCTTTTGGTTAAATTCTGCATTTTTTAAAAATAAACTTCCGTACGAGCTAGCACCTTTT TTTAAGTATTTTCTGGTACATTTGACTATGCTGAACAGTTTTATAAAATAAAAAAGAATGACTTC ATATAATTTTGAGGTACTTTTGAATTTTTGAAAATAACAGCTTTTGGTTAAATTCTGCATTTTTT AAAAATAAACTTCCGTACGAGCTAGCACCTTTTTTTAAGTATTTTCTGGTACATTTGACTATGTT GAACAGTTTTATAAAATAAAAAAAAATGACTTCATATGATTTTGAGGTACTTTTGAATTTTTGAA AATAAGAGCTTGTGGTTAAATTCTGCATTTTTTAAAAATAAACTTCCGTACGAGCTATTGTATAT TTTTTGGTATTTTCTGGTACATTTGACTATGATGAACAGTTTTATGAAATAAAAAAGAATGACTT CATATGATTTTGAGGTACTTTTGAATTTTTGAAAATAAGAGCTTT Found at i:2362652 original size:10 final size:10 Alignment explanation
Indices: 2362637--2362658 Score: 37 Period size: 10 Copynumber: 2.2 Consensus size: 10 2362627 AGCTATTGTA * 2362637 TATTTTTTGG 1 TATTTTCTGG 2362647 TATTTTCTGG 1 TATTTTCTGG 2362657 TA 1 TA 2362659 CATTTGACTA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.14, C:0.05, G:0.18, T:0.64 Consensus pattern (10 bp): TATTTTCTGG Left flanking sequence: Indices 2362137 -- 2362636 ATAGTAGCACAATTTGTTTGGTATTTTCTGGTACATTTGACTATGCTGAACAGTTTTATAAAATA AAAAAGAATGACTTCATATAATTTTGAGGTACTTTTGAATTTTTGAATATATCAGCTTTTGGTTA AATTCTGCATTTTTTAAAAATAAACTTCCGTACGAGCTAGCACCTTTTTTTAAGTATTTTCTGGT ACATTTGACTATGCTGAACAGTTTTATAAAATAAAAAAGAATGACTTCATATAATTTTGAGGTAC TTTTGAATTTTTGAAAATAACAGCTTTTGGTTAAATTCTGCATTTTTTAAAAATAAACTTCCGTA CGAGCTAGCACCTTTTTTTAAGTATTTTCTGGTACATTTGACTATGTTGAACAGTTTTATAAAAT AAAAAAAAATGACTTCATATGATTTTGAGGTACTTTTGAATTTTTGAAAATAAGAGCTTGTGGTT AAATTCTGCATTTTTTAAAAATAAACTTCCGTACGAGCTATTGTA Right flanking sequence: Indices 2362659 -- 2363158 CATTTGACTATGATGAACAGTTTTATGAAATAAAAAAGAATGACTTCATATGATTTTGAGGTACT TTTGAATTTTTGAAAATAAGAGCTTTTGGTTAAATTCTGCATTTTTTAAAAATAAACTTCCGTAC GAGCTAGCACCTTTTTTTAAGTATTTTCTGGTACATTTGACTATGCTGAACAGTTTTATAAAATA AAAAAGAATGACTTCATATAATTTTGAGGTACTTTTGAATTTTTGAAAAATACAGCTTTTGGTTA AATTCTGCATTTTTTAAAAATAAACTTCCGTACGAGCTAGCACCTTTTTTTAAGTATTTTCTGGT ACATTTGACTATGCTGAACAGTTTTATAAAATAAAAAAAAATGACTTCATATGATTTTGACGTAC TTTTGAATTTTTGAAAATAAGAGCTTTTGGTTAAATTCTGCATTTTTTAAAAATAAACTTCCGTA CGAGCTAGCACCTTTTTTTAAGTATTTTCTGGTACATTTGACTAT Found at i:2363303 original size:10 final size:10 Alignment explanation
Indices: 2363288--2363309 Score: 37 Period size: 10 Copynumber: 2.2 Consensus size: 10 2363278 AGCTATTGTA * 2363288 TATTTTTTGG 1 TATTTTCTGG 2363298 TATTTTCTGG 1 TATTTTCTGG 2363308 TA 1 TA 2363310 CATTTGACTA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.14, C:0.05, G:0.18, T:0.64 Consensus pattern (10 bp): TATTTTCTGG Left flanking sequence: Indices 2362788 -- 2363287 CGAGCTAGCACCTTTTTTTAAGTATTTTCTGGTACATTTGACTATGCTGAACAGTTTTATAAAAT AAAAAAGAATGACTTCATATAATTTTGAGGTACTTTTGAATTTTTGAAAAATACAGCTTTTGGTT AAATTCTGCATTTTTTAAAAATAAACTTCCGTACGAGCTAGCACCTTTTTTTAAGTATTTTCTGG TACATTTGACTATGCTGAACAGTTTTATAAAATAAAAAAAAATGACTTCATATGATTTTGACGTA CTTTTGAATTTTTGAAAATAAGAGCTTTTGGTTAAATTCTGCATTTTTTAAAAATAAACTTCCGT ACGAGCTAGCACCTTTTTTTAAGTATTTTCTGGTACATTTGACTATGCTGAACAGTTTTATAAAA TAAAAAAGAATGACTTCATATGATTTTGACGTACTTTTGAATTTTTGAAAATAACAGCTTTTGGT TAAATTCAGCATTTTTTTTAATAAACTTCCGTACGAGCTATTGTA Right flanking sequence: Indices 2363310 -- 2363809 CATTTGACTATGATGAACAGTTTTATGAAATAAAAAAGAATCGCTTCATATGATTTTTCAGTACT TTTGAATTTTTGAATATATCAGCTTTTGGTTAAATTCTGCATTTTTTTTAAATAAACTTTGGTAC GAGCTAGCATTCTTTGTTTAGTATTTTCTGGTATATTTGACTATGTTGAACAGTTTTATAAAATA AAAAAGAATGACTTCATATAATTTTGAGGTACTTTTGAATTTTTGAAAAATACAGCTTTTGGTTA AATTCTGTAAACTTCCGTACGAGCTACGGTATAACAATGTCTGTGTTTTTTTCAATCAATCAAAA ATTCAAACCTCTGGAACATCAGTCTCCTCGTAGGGTAATGTGCTGGAAATATACACCTCATCTGG TGGGATTGTTTTCATGCAGCCCTCTGTTATAACCATCAGACTAAGAACAATTGAAAACAGTGCTA TAATATTCATAGTTCGGAACCAGCAACAAAAATAAATGACAAGAC Found at i:2363387 original size:8 final size:8 Alignment explanation
Indices: 2363374--2363389 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 2363364 TTTTCAGTAC 2363374 TTTTGAAT 1 TTTTGAAT 2363382 TTTTGAAT 1 TTTTGAAT 2363390 ATATCAGCTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.25, C:0.00, G:0.12, T:0.62 Consensus pattern (8 bp): TTTTGAAT Left flanking sequence: Indices 2362874 -- 2363373 ATTTTGAGGTACTTTTGAATTTTTGAAAAATACAGCTTTTGGTTAAATTCTGCATTTTTTAAAAA TAAACTTCCGTACGAGCTAGCACCTTTTTTTAAGTATTTTCTGGTACATTTGACTATGCTGAACA GTTTTATAAAATAAAAAAAAATGACTTCATATGATTTTGACGTACTTTTGAATTTTTGAAAATAA GAGCTTTTGGTTAAATTCTGCATTTTTTAAAAATAAACTTCCGTACGAGCTAGCACCTTTTTTTA AGTATTTTCTGGTACATTTGACTATGCTGAACAGTTTTATAAAATAAAAAAGAATGACTTCATAT GATTTTGACGTACTTTTGAATTTTTGAAAATAACAGCTTTTGGTTAAATTCAGCATTTTTTTTAA TAAACTTCCGTACGAGCTATTGTATATTTTTTGGTATTTTCTGGTACATTTGACTATGATGAACA GTTTTATGAAATAAAAAAGAATCGCTTCATATGATTTTTCAGTAC Right flanking sequence: Indices 2363390 -- 2363889 ATATCAGCTTTTGGTTAAATTCTGCATTTTTTTTAAATAAACTTTGGTACGAGCTAGCATTCTTT GTTTAGTATTTTCTGGTATATTTGACTATGTTGAACAGTTTTATAAAATAAAAAAGAATGACTTC ATATAATTTTGAGGTACTTTTGAATTTTTGAAAAATACAGCTTTTGGTTAAATTCTGTAAACTTC CGTACGAGCTACGGTATAACAATGTCTGTGTTTTTTTCAATCAATCAAAAATTCAAACCTCTGGA ACATCAGTCTCCTCGTAGGGTAATGTGCTGGAAATATACACCTCATCTGGTGGGATTGTTTTCAT GCAGCCCTCTGTTATAACCATCAGACTAAGAACAATTGAAAACAGTGCTATAATATTCATAGTTC GGAACCAGCAACAAAAATAAATGACAAGACAGCCCTTCTGATTTTTATAATCTCACATCAGTTTC CCCGGAGATATCTCGAAATTCCGGTTAGCGAAATCTATTGTTCTT Found at i:2368115 original size:8 final size:8 Alignment explanation
Indices: 2368102--2368118 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 2368092 ACCCAGGGCC 2368102 AACCATCG 1 AACCATCG 2368110 AACCATCG 1 AACCATCG 2368118 A 1 A 2368119 CTTTCTCGGA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.41, C:0.35, G:0.12, T:0.12 Consensus pattern (8 bp): AACCATCG Left flanking sequence: Indices 2367602 -- 2368101 TGGGTGCGAGGAGCTAGGGTAAGCATTATAATCATTTATATATTAAACATAAGTTATAGTATCTG TGACGTCACACCTAACAGCAAAATTCAATTTTTTAGCAAATTTTAGTGGAATAATAGAAATTTCA AGTGAAAAAAATTATTCCACGAAATTCAGATGTTTTGAACAAAAATCGAAATTTCTTGATTATCT ATTTTTTGTGAACTCTCCGTGAACCTTCGGAACTACTCGAAAATTGCCCAATTATTTTTATAAAT TAGTCTTGACGAAATGGAAACTGCAAATTTTCAAACAGAATATAAATATTCAAACTAACTTTAAA ACTTATTGAATTGTATTTTTACCAGTAAGCTGGACTTTACCATTTTCTAGGAGGACCGCGAGCCG CCACCACCCCCGAGACGGCCAAGAACCAGGCTCCAAGTCAGAGTGGATCGTGAAGCCGCGGAGGC TAGGATGAGAAGTCGAAGCCGTAGCCAAAACCTCGACCCAGGGCC Right flanking sequence: Indices 2368119 -- 2368618 CTTTCTCGGACTCCACCACGTCGCCGATCCGAGGATCGCAGGTAGCAGTTTCTGAACAAAAAAAA TCATAAATTGTGTTGTTTTTCAGTGCCGAAAGAGCTCGAGGATCTCCGACGAACGATAATATTCA GATGGATCGTCAAAGCCATATCCTTTCTGTTGGATTGAAGAAGGTATTCATTATCACTTCTATTA TACTCCTACAGATTTATCTTCAGGCCTCAAACGGAGAGTTTGGGCTTCAAGTTATGGACGGAATT CGTGGACCTGTCATCAGTTTCGTCAGTCCGGGATCCGCCTCTGCTCACATCTTCCGAGCTGGCGA CGTGATTATGGCGGTCAACGATAGACAGGTTACTGATATGGTAAGATTGAAATTATTTGGACTAA AGAATCTTAAGTGATTGTTTTTTTTTTCTGGAAAACACTTCGAAAAACACTAAAGCTACCAGAAA ATGCTCTACAGCTTTATCACTTGTCTAATTTTGTAATTTTTTGCA Found at i:2369118 original size:9 final size:9 Alignment explanation
Indices: 2369100--2369118 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 2369090 TCAAATTCCA * 2369100 TTCTCTTTC 1 TTCCCTTTC 2369109 TTCCCTTTC 1 TTCCCTTTC 2369118 T 1 T 2369119 ATAAAATCGT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63 Consensus pattern (9 bp): TTCCCTTTC Left flanking sequence: Indices 2368600 -- 2369099 AATTTTGTAATTTTTTGCAGAAAACGGTGCAAGATTCCTTTGAAGCCGCTGGGAACGTCGTTTGG ATTGAGTTTTATCGTCCTGCTGGAATTACACAATTGAATCTCTGAGTTGATACCCTGATAACTGA ATAAATTATCGACTTGAACTGGGTACATTTTTAGAGCTTATAGTGTACCAACACACTTCTTTCAA GTGACGTCTCTTGCAGATTTGACGGCCTCTTTATTCCGCTCTAATTTCTGGTTTCAATTAACTGG AAATGTACAATTCGCACCAATTTTAGTCTGAAATTCATCAATTTTCAACGTATTTCGCAGAGATT TCACAGCTTTGTACACAGAATGTGATTTCATTTCATTTTTTCGCCAGTTTTAGAACTTTGAATAT TTGATAATTTATTCATAATTCGCAAAAAAACATTACTCACCAGATTGCAACTAACCGCGTGCATA CATCCATCAGTCTCCTCAAAAATAAGATCATTAAGTCAAATTCCA Right flanking sequence: Indices 2369119 -- 2369618 ATAAAATCGTGATTACATATCAAGAATGCGACTAAACAAGGAAGTTAAAAGTGCACCAGACAAGC CGATTTTGCGCAACAGGATTCGCAACCTGCATCCGAAGATATGAAAAGCAACTATAAAAGATTGG AATGATCTATGTATACGACACTTTCTGTCTCTTTTTATTTTAAAATGAATATTTTTTGGTCATTT ATCGTGATTGCACTTGTGATGGGCTTCACTGAGAGTTGTATGCGAACGGTTCCGCCGGATGATGC CTATATTCCTGTCACGTCGGCTCCTGGAGAAACTGAGATGCCTGGGGTAATGGTTTTTCATTTCA TAAAATCTAAATTTCCATGTAAATTTTAAACCTTCTAGGAAATGCTGACGACAATTGCAATGGAA GTCACAACAGGTTAGTTCTAGTAATACTACGATCTAACTTTTATATTATTTTCAGAAAAAGTCTG TGAAGCCACCTCAACTGCGACATGTCCAGATTTGGCGAATTTTTT Found at i:2370749 original size:10 final size:10 Alignment explanation
Indices: 2370730--2370750 Score: 35 Period size: 10 Copynumber: 2.1 Consensus size: 10 2370720 AATACGAGCT * 2370730 TTTGAGGAAA 1 TTTAAGGAAA 2370740 TTTAAGGAAA 1 TTTAAGGAAA 2370750 T 1 T 2370751 GTCGCATGTT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.43, C:0.00, G:0.24, T:0.33 Consensus pattern (10 bp): TTTAAGGAAA Left flanking sequence: Indices 2370230 -- 2370729 CGTTTTTGTTTTTCTTTGATTGGTTGCCATGAATTCATCTGTTAGCCTTTTGTCAAAAAAAAAAA CGAAAAAGAAAAAAATTGATTCCAATTTTTCTGAATAAGTTAATTTTGTTGTTTTCCGTATTTAA AATAACATTTTCAAAAAATTGCAGTAAACTTTGCGTTTTTCAGTTGAAAACAGTAGTTCTACAAA TGCAAACTGTTATAGTATCTCACAGAAAACATAAAATATTGTTTTGAGAAAATACCAAAAACATT GTCATAGATTTAACTGTTCTGGTGCTAAAATTACGTCAGTGTTACTAAATGTACCCATTTTCAGC CCGTGGTCACTCTGTCAATTTTGTCCTTTCGTAACTGGGGATTTTGTCTAAACGCACTCATAATA ATCCAAAACAACCAAATATCATAATAAAAAACTCCAAAAATTTTTTTAGATTTTTGATAATTTCC GTTTAAAGTTTTGGCAAATTGCCAAAATTTTGAAAAATACGAGCT Right flanking sequence: Indices 2370751 -- 2371250 GTCGCATGTTTCGACCCCTACAATGTTTTAATACAAATAATTTAAACAAAATTAAAACATAAAAA TTATGAAAAAAATGTTTTTTTTTGGTCGACTTCCAAAATTATGAGTGACAAAAACTGACTATTGA GTTATTGCCACTTTTTGACAGTTAATAAAAAATTTTCAAAATTTTTTTGCAAAGTTTTATCATGA TATTTGGTTATTTTATGACCAAAGAAGTGGTTTTTAATAATTTCCCCACTGGCGCTACTTCACCT TTAATTGAAGTTTTTAAAGTATCCTATAAAAAACAATATTGAAATCTATGAGTGTGTCTTTTTCA ATGGGTTTCAGATGGACTAAATCCTTTTTGAAAAAATGAATAATTAAGTTTCCACATAAAATCAA ATGTCCATAAAACTAGATCAACAAGCCAATTTTCCAATAGATCAATTTCAATTTCACAAAAACTT GATTATCATTCAAGAATGCGGCAAACAAGGAAGTTAAAAGTACAC Found at i:2372854 original size:7 final size:7 Alignment explanation
Indices: 2372838--2372855 Score: 29 Period size: 7 Copynumber: 2.7 Consensus size: 7 2372828 GCGAGCGTTA 2372838 GCTT-AG 1 GCTTAAG 2372844 GCTTAAG 1 GCTTAAG 2372851 GCTTA 1 GCTTA 2372856 TTTAAGCTTA Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 6 4 0.36 7 7 0.64 ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33 Consensus pattern (7 bp): GCTTAAG Left flanking sequence: Indices 2372338 -- 2372837 CCCCCCTCCCTCCCCGCTTCACTACTTAAGCCTGAATAATCACCTAGATTATTATGTTTAAAATG AATTTTCCTACTATTTGGCTAGTGATATTATTCTCAGTGGTAGATGGCTGCATGCGAACCATACC ACCGGATGAAGCTTATATATCTAGCACACTGGCTCCTGAGGAAAGTTCTAGTACAATGGATCCCG ATGATACGGTTACGGCAGAGGTATTTTTAAACAAACATAGTGTGTTGTGAATTTGAATTCCCGCC AAAATATTTCACAAAGAATTTGATTTCCGCTTCCTCAACTACTCTCACATAGTATAATCCTCCAA CTTTCAGGAAACAATGACAACACCTTCAATGGATGTCTGTTACAGTGATGTTGGAACCAAATATG CAAATTGGAATTCAATTGTTTTATGTAATAGCTGATCAATTTTGGAAAACTTCTGATTTAAATTC ATAAGTTAGGCTTAGGCTTAGGCTTGGCGTCAGTGGCGAGCGTTA Right flanking sequence: Indices 2372856 -- 2373355 TTTAAGCTTAAGCCGCGCCATACCGCCGGTGTGTCATAAGGATTACCAATATTTTATTCCAGTTG GGAATCTTAGTTTGTTTCGGCCCGTAGGCTTGTTGGATTGGGGATTTCCTATGATTTATCTAGAT TTTGAATTGAATTCTGAAATTTGTCGTAAGATCCGGCGTTTTAGCCAAACATGGTGCATCGACTA GCATTTTGTTTTAAAGGTGGAGTAGAGTCAAAAAAAATTTTTTTTGCTTTAAATGACAGAAAATG GACCCTAATAACCGAATATAACGGTAAAAAAATTTTAAAAAAATTTCTAATTTTTTAATGATTTT TTCAATTTTGAGAAAATCAAAGAAACGGCTGACGAAATTTGAATTGCCGCGCAAACGAATGACGT CATTTTTTATATTTTCGCGTTTTCTGGCTAAATTCGTCGATTTTTCTCGATTTTTTCTTCTATAT TTGATTTGAAACATTGTTTGTCAATTATGTAACCACTTTTCCGTA Found at i:2373620 original size:10 final size:10 Alignment explanation
Indices: 2373607--2373626 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 2373597 AAAAATTTAG 2373607 AAAATTTTTT 1 AAAATTTTTT 2373617 AAAATTTTTT 1 AAAATTTTTT 2373627 TACAGTTATA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60 Consensus pattern (10 bp): AAAATTTTTT Left flanking sequence: Indices 2373107 -- 2373606 CAGAAAATGGACCCTAATAACCGAATATAACGGTAAAAAAATTTTAAAAAAATTTCTAATTTTTT AATGATTTTTTCAATTTTGAGAAAATCAAAGAAACGGCTGACGAAATTTGAATTGCCGCGCAAAC GAATGACGTCATTTTTTATATTTTCGCGTTTTCTGGCTAAATTCGTCGATTTTTCTCGATTTTTT CTTCTATATTTGATTTGAAACATTGTTTGTCAATTATGTAACCACTTTTCCGTAAAAAAAAAACT TGAAAACCCTATGGAAAATGTCAGAAATGTCAAAATTGGCCTAAAATCCGCAATTTAATATTTGT TATTAATTTTTTTTCGAAATAACTATTTTAAATAATTGACAAACAATGTTTCAAATCAAATATAG AGAAAAAATCGAGAAAAATCGACGAATTTAGCCAGAAAACGCGACAATATCCAAAATGACGTCAT TCATTTGTGATTTTCTCAAAATTGAAAAAATCATAAAAAATTTAG Right flanking sequence: Indices 2373627 -- 2374126 TACAGTTATATTCGGTTATTAGGGTCCATTTTCTGTCATTTAAAGCAAAAAAAAATTTTTAACTC TACTCCACCTTTAAATTAGAGCATCATCACTAACTTTTTCAATGTTTTGATATTTTTACAACTTT AGACGAAGTACAAACTGTTGACCAAGATGGCTGCACTGTATTAAAATGTCCCGCAGGCAAAACTC CAGCTGTCTCTTCTCTTTATGATAAAAGTGAAATACCAGCGCCTATTGATGCTGATGCCGATTAT ATGACGTTTGTAGGTAAACTCTTTTTCAATCTGAATGCTTAAAATTATTTTAGGGAAGTATAAAT AAAGATTCAATGGCCGACATCAACGGAGACATGATTTTTGAATATTTTGGAGCAATGTGTGAAGG CGGTGAATTAATATACACAAATTATCCTGATGGAATAGCGTATGTCAAAGATGGAAACATGGCAT ATACTGGCCCAGATGCATCGTATAACGGAAAGAAGTCTAAAGTGA Found at