TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_III Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 13783317 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:7228064 original size:7 final size:7 Alignment explanation
Indices: 7228054--7228069 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 7228044 CTTGACTCGG 7228054 ATTGAAA 1 ATTGAAA 7228061 ATTGAAA 1 ATTGAAA 7228068 AT 1 AT 7228070 ACTCGGATCG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.56, C:0.00, G:0.12, T:0.31 Consensus pattern (7 bp): ATTGAAA Left flanking sequence: Indices 7227554 -- 7228053 TTGTTTCACCATAAGATCCTGAATCGCAGGAGCGGAACTTGACTCTCCGGGTGGCGGACGAATCA GTAGTTGAGGAGTAACTGTTGCAAGTACTGGATTCGTTGGTTTTCGTTTTGCTGGAGCAGTCTTC TTTCGAGTTGTCTTTTTAAGAAATGCGAGTTGACATGCAAAGTCTTCAGTTTCTTGTCGAACGAT GTCGCTCACTGGATTGCCAGGAACATCCGAAGTAGTATCATCACATTTTTTCTTTTTCGAAGCTG ACGAACTTGGTTCTCTGTAATGATATTTGGAACAACAGCTTTTTGGAACATCGAAAAATTTCGTT TTTTCGATATTTAGAAAAATATCTTAAATTTTTGTCATTTTTTTAGCAGCTATGTTTTTCATCAA CATGATCAAAATTTGATGAAAAATTTAATTTTATTGTTAATTTACTAAATATTTTTTGATCTCTC GATGTTCCCAAAAATGTTAATTTTTTAATGACACTCTTGACTCGG Right flanking sequence: Indices 7228070 -- 7228569 ACTCGGATCGGAGGAAAAAGCGACTCACGAATCTGCCGTTGGTTTGTCTCTTTTTCTGGTCTTAC TCGGCGCCAAACAATCTCCGTATCCTCTATTTAATAGATTAATCATTACTTTCCAGGGTTCAGAT GCTTGAATAGGTTGGTTCTCGTTATGAACTTGATATCTTAATTGGATTGGATTTTTACGGCCACA CTGAAAAATAGAACAAATAAAACTGATAATAAGAGTGTTAAATTAACTTACAACACAAAAAAGTT CCGCCACAATTGCATTTCGAACATTTTTAGAATTTATTCCTTCCGCAATAATTTCATCGGTTAAC GTGAAAGGTCTTGGATAAGTTACAGTATGAGATGGTTTTGTTTCTGAAAAAACAATAAATGTTTT TGTCAACTGAATCATTAACTAACTGATATTAACATCCGTCGCCACTTTTATTCCAGTTACTTCTA TTTTCTTAGCTTCCAGCTTCTCCTTACTCTCTTCTACATTCTTAA Found at i:7235212 original size:7 final size:7 Alignment explanation
Indices: 7235200--7235213 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 7235190 GTTAATTAGG 7235200 ATAGTTT 1 ATAGTTT 7235207 ATAGTTT 1 ATAGTTT 7235214 GGGGATTATG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57 Consensus pattern (7 bp): ATAGTTT Left flanking sequence: Indices 7234700 -- 7235199 TTAGGGGCAGTTGGGCGCCAGGCGCCCAACTTGAACGATATGAGGGCCACGAACGGTATAAATTG GGGAAATTTAATGTGCTGACGCCGTCGTGAAGAGCCCGATCGTTCGATGTTGCCGACATGATGTT GACTGTGCAGGAGCTGCTGGTGTTGCTGATGGAGCCGACTGTGCTGAAGTACGTGCTGCAAAAAC GAAAAAGGACGGACCGAAAGTACTTATTATTGGTTAAGGTGGCAAAAGAGGTAAAATGGTAAACC AACGTGAATCGATAATCCTGGCAACTCCTGTAGATCTGATACTTGAAGCTCGTCTGCTGCCCAAA CAAGGATCGTCGCTTCTCAACCCTCTGTTTTCGCGTTCCACCCACGTGCGAACAATCCGAAATTT CCCTAAATCCTTGACAAGAGCCCGCGAGATCTTTCACTGCCGCTCTCCGTTATGTCTCCTGAATA CCTAAAAATGGCGAACTGATCTGAAAACAAATTATGTTAATTAGG Right flanking sequence: Indices 7235214 -- 7235713 GGGGATTATGGCCGTTTCCCATTTAAAAGACCCCGAAAAAGAACTACCTGTAGTCTGTTATGAAG TAATCTCGCGACTCGTGGCCGACCGCGGTTTTCTCCACTCCGTTAGTTATCCTTTCCTTATCCAG GTCTTATCCGAAACTTGAAAACTTGTTCTTGTTGGCTCGCTGGATTCCTTCCCTGCCGTTCCAAT GTCACCCTTGATACCTCTAGGGAATTTCCTGTAAACCTTCAACGCCTGCAAATCGCCAAAATTAA CCTTTAGGGATATCAATTTTTGGTCGCTATTAAAAAATTTTTAAACCTTTCCTGCCACCGCCAAA AAAGACTGACAGATTACTCCTGCAATTATTTCGGAGGAATCCTGCCTGTCTACTCTGGTGGAATT GCGGAATTTTAAGAATAAGTTACCTGTCCTCGTGTTTGTCAACCTACCCACAATAGCTCGGTGTT AGAACCGCCGCTAGAATAGTGAATATAGAGTAGCAAAAATATCAG Found at i:7239798 original size:10 final size:10 Alignment explanation
Indices: 7239779--7239798 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 7239769 TTGAAATTAG 7239779 TTAAAAATTT 1 TTAAAAATTT * 7239789 TTATAAATTT 1 TTAAAAATTT 7239799 CTGTTGAATT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55 Consensus pattern (10 bp): TTAAAAATTT Left flanking sequence: Indices 7239279 -- 7239778 CCAAAACAACAGCCAAAGCAACAAGAAAAGAAACAAGATGGAAAGAAGCAGACATTGTTAGGAGT TGGAACCAAGAAAGATGATAACTATTCGGAATGGTACAGTGAAGTTATCACTAAGGCAGAAATGA TCGAATACTATGATGTATCTGGTTGCTATGTTCTTAGACCATGGTCATTTGCAGTTTGGGAATCT ATTCAAGAATGGTTTGATTCTGGAATTAAGAAATTAGGAGTGAAGAACTGCTACTTCCCAATGTT CGTATCAAATGCTGCCCTCGAACGCGAAAAGACTCATATTGCTGATTTTGCCCCAGAAGTTGCTT GGGTTACTCGTGCTGGAAACTCTGAAATGGCCGAACCAATCGCTATTCGCCCAACTTCAGAGACA GTTATGTACCCATCTTACAAGAAATGGGTTCAATCTCATCGCGATCTTCCAATCAAGTTGAACCA ATGGTGCAATGTTGTTGTAAGTATTGATTTTTTAATTGAAATTAG Right flanking sequence: Indices 7239799 -- 7240298 CTGTTGAATTTCTCCTAGCTGTCTTGCTCCACTGCAAAAATATTATCATAATACTTTTTTCCTTT ACAGCGATGGGAGTTCAAGCATCCAACACCATTCCTTCGTACTCGTGAATTTCTCTGGCAAGAGG GACATACGGCTTTTGCCAACCCAGCAGACGCTGAAAAAGAGGTTTTCCAAATCCTTGATCTCTAC GCAGGAGTCTACACTGATTTGCTCGCTATCCCAGTTGTGAAGGGACGAAAGAGTGAGAAGGAAAA GTTTGCTGGAGGAGATTTTACGACGACAGTCGAAGCATACGTGGCATGCAATGGTAGAGGAATCC AAGGAGCAACTTCTCACCATCTCGGACAAAATTTCTCCAAGATGTTTGATATTTCGTACGAGGAT CCAGCGAAGGAAGGAGAACGAGCATTCGCTTGGCAAAATTCGTGGGGTCTTTCCACTCGTACCAT TGGTGCAATGGTAATGATTCACGGAGATGACAAGGGATTAGTACT Found at i:7243546 original size:9 final size:9 Alignment explanation
Indices: 7243532--7243550 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 7243522 GAGCTTCCAT 7243532 CAACTGGAA 1 CAACTGGAA 7243541 CAACTGGAA 1 CAACTGGAA 7243550 C 1 C 7243551 TAGCGGTGTT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.42, C:0.26, G:0.21, T:0.11 Consensus pattern (9 bp): CAACTGGAA Left flanking sequence: Indices 7243032 -- 7243531 TATTCTTATGGTTGCAAAAGAAAAAAGATTACGAAAATATCTTGTGACAGAGTAAGAAACCATTG AAATTTAATTAATCACCGTGGAGACAGGTGTGCACTCTGCTCTTATTATATTATCAAAACGAGAA ACGCGTGAGCAAGAAGTGGGCGTGACTTGGTAGAAAGGTACTTAATCGAGATGTTGAGCCAACTT TCGAGATTATTCTAAAAGTTTCCATATCAATAAACTTTTTTGGAAATTTCATCTTGCAAGATGTC GAAGGCAACGTCCGCGTGTTCTCAAAAGGTGAGATTTCTGAAATAATACTTAGGATTAAACTTGA AATTTTATCCACATAACTTTATCTAGGAAAAAACTTTTTCGATTTATGTTAGAACCTAATAAATT TCAGAAGACCTCTCTCCTGGATCCGAGTCCAAAAAAGTCATCTGTAATTGAAACAACAACCAAAA AAACTTCTGGGATTGAGTCCAAACTATTGCCAAATGAGCTTCCAT Right flanking sequence: Indices 7243551 -- 7244050 TAGCGGTGTTAAGAATGGGGCTTCAAGTCCAAAAACTAGCCCAGCAAAAACCACTACTACCACAA CTACCGTAGTCACTCAAAAAGTTTCAAATCAACCAACTGCACCCATTTCAACACTTCCACCTCGT AAGCCAACAGCCCAAAAAAGTCGCGAATTGTCCCCTCCAAAAGCGAAGAAATCTCCGAGTCCAAG TCGTACTGGTTCAGGTGACTCTGGTTCAAGAAAGGAAAGCAGTGCATCCAGAAAAGATTCTTCGA AAACCGAAAAATTGGTCAAAGATTTGGAAAATGTCAAATTGGAGAAAGGAGGTAACAAACTCAGG CAACAATGGGCAAACTGAATACACTTAATTATATTTCAGATTCCCGTGAATCGGCTACTCTTCCA ACTCCGAAGCAGTATCCAGCTTCGGACGATGAGGAAGACACGGTTAGTGGTTAAACCAAAACCTA GCTAGAGCTCATATTACTCCTCTTGAGTTCTGAAACTCGTGGCAA Found at i:7243618 original size:9 final size:9 Alignment explanation
Indices: 7243600--7243620 Score: 35 Period size: 9 Copynumber: 2.3 Consensus size: 9 7243590 CCCAGCAAAA * 7243600 ACCACTACT 1 ACCACAACT 7243609 ACCACAACT 1 ACCACAACT 7243618 ACC 1 ACC 7243621 GTAGTCACTC Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.38, C:0.48, G:0.00, T:0.14 Consensus pattern (9 bp): ACCACAACT Left flanking sequence: Indices 7243100 -- 7243599 TTTAATTAATCACCGTGGAGACAGGTGTGCACTCTGCTCTTATTATATTATCAAAACGAGAAACG CGTGAGCAAGAAGTGGGCGTGACTTGGTAGAAAGGTACTTAATCGAGATGTTGAGCCAACTTTCG AGATTATTCTAAAAGTTTCCATATCAATAAACTTTTTTGGAAATTTCATCTTGCAAGATGTCGAA GGCAACGTCCGCGTGTTCTCAAAAGGTGAGATTTCTGAAATAATACTTAGGATTAAACTTGAAAT TTTATCCACATAACTTTATCTAGGAAAAAACTTTTTCGATTTATGTTAGAACCTAATAAATTTCA GAAGACCTCTCTCCTGGATCCGAGTCCAAAAAAGTCATCTGTAATTGAAACAACAACCAAAAAAA CTTCTGGGATTGAGTCCAAACTATTGCCAAATGAGCTTCCATCAACTGGAACAACTGGAACTAGC GGTGTTAAGAATGGGGCTTCAAGTCCAAAAACTAGCCCAGCAAAA Right flanking sequence: Indices 7243621 -- 7244120 GTAGTCACTCAAAAAGTTTCAAATCAACCAACTGCACCCATTTCAACACTTCCACCTCGTAAGCC AACAGCCCAAAAAAGTCGCGAATTGTCCCCTCCAAAAGCGAAGAAATCTCCGAGTCCAAGTCGTA CTGGTTCAGGTGACTCTGGTTCAAGAAAGGAAAGCAGTGCATCCAGAAAAGATTCTTCGAAAACC GAAAAATTGGTCAAAGATTTGGAAAATGTCAAATTGGAGAAAGGAGGTAACAAACTCAGGCAACA ATGGGCAAACTGAATACACTTAATTATATTTCAGATTCCCGTGAATCGGCTACTCTTCCAACTCC GAAGCAGTATCCAGCTTCGGACGATGAGGAAGACACGGTTAGTGGTTAAACCAAAACCTAGCTAG AGCTCATATTACTCCTCTTGAGTTCTGAAACTCGTGGCAACCTCTCTTTCAAAATTGTGATGGGA ACACTCTGAACACACAAAATTATTCCATTCTTGTTTGTACATAGG Found at i:7248068 original size:9 final size:9 Alignment explanation
Indices: 7248054--7248083 Score: 60 Period size: 9 Copynumber: 3.3 Consensus size: 9 7248044 AAATCTAATT 7248054 AATATAGGC 1 AATATAGGC 7248063 AATATAGGC 1 AATATAGGC 7248072 AATATAGGC 1 AATATAGGC 7248081 AAT 1 AAT 7248084 GCCTATAGGC Statistics Matches: 21, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 21 1.00 ACGTcount: A:0.47, C:0.10, G:0.20, T:0.23 Consensus pattern (9 bp): AATATAGGC Left flanking sequence: Indices 7247554 -- 7248053 ATTTAGACTTACCGTATCTTTTCTCCCTGCTCCCGAAACCAATCGGTTTTATGAAATCGAGGTTT TTATCAATATTCTCTTGAGCTTCACTAATTGCAAAAATCAAGAATATAAGAATAAAAAGTAATAT AGAACGCATAGGTCAAAAAATATTAAAAAGAACTGTACATACAAGAAGACTGAATGAAAGCAGCT GAGATGGAGAGTAAGAGAGAAAAAGATGAGGAAGAGGAAAACAAGTGTGAAAATATAGAGAAGGA TGGCATGGCAGAAGATGACGATGAAGATGTTGGCAGAATTCATGTACCGCCCACATTTCCAAAAT ACAGAGGGTCAGTCATCAGAAATTGAAGTTCGCGGTTCATAAGTAACCATTTTTGAAAAAATTGT ACTATTTCTCGAAAACGTATCATTAGCGTAGCACGTTTTCTTAGTCGTTTGTTTGCAAGATTTGC GAAAAAAAGTTTTCAGAGCATTATTACAAATGGAAAAATCTAATT Right flanking sequence: Indices 7248084 -- 7248583 GCCTATAGGCAATTCACCATAAATATATTTGTCTAAATTATTGGGAGAGTTTTCTTGCATTTTTT CTTTGGTTGTCAAAAACGAAACGTTTCAGTTTTGTTCTTGAAATTTTCTAGAAAAATAGAAGGTT TAATTTTAAGTTATTACTGAATTGTTATTTTTTCTCAGAAATAGTACAACAATCATAAATAAAAA GTGAAAGAAGAAGGTGAGCTTGTGTGAAACTTGTTCTTGAAGACGTTCTTGAACAATGTCAATCA CTTTTGTCAAGTATAATAATGTGACGTGGCATTCCTTTTACAACAACTAGATTAGCTACTTGAAG GACGTGAGACGACTTAACAAGAGTTGGGGGACAAGTGAAGGTTAAGAATAAAGTTTTAGGTATTT ATCTTAAATTGGAAGTAAATTTTTGTATTGTTTCGCTGAGTATTATGGAACACCGCAGGTTGTCA GTGGTTAGCGAACCTTCCAATTTAGAATTATTGTCTAGCCTCCAG Found at i:7249179 original size:8 final size:8 Alignment explanation
Indices: 7249166--7249183 Score: 36 Period size: 8 Copynumber: 2.2 Consensus size: 8 7249156 CGAACTAAAC 7249166 AAAATCTG 1 AAAATCTG 7249174 AAAATCTG 1 AAAATCTG 7249182 AA 1 AA 7249184 GCGATGAACG Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.56, C:0.11, G:0.11, T:0.22 Consensus pattern (8 bp): AAAATCTG Left flanking sequence: Indices 7248666 -- 7249165 AAAATGAAAGATAAAACTGTTTTCCTTCTTTCTCTCATTTCGTCTCACGCGTTCGTTCATACGGG GGTAGCAGAAGAAGAAGCTTTCAATGTTTTTGCCTTTTTCTAACCTTTCTCTAAACCTCTTTTTA TTCTTTACTATTCATCATCTCATCCCTCATTGCCTTAGAACATAAAAAACTTTCGCTAACTTATT ACAGCTTTTCATGATCATGGAGTGGTGTGTAGTCGGCAGGATGATGGCTGACGGACTGAAAATCA AAGTGTATTATTTTATTGAGTAAAAGATTTTTGTCGGTTTTTCTCACGGCAAAGGATAAGAAAGA CAGATATATAGATACATATGGAAAGTACTTACAGTTGATAAGATTATAAAAACAAGGAAGCGGAG AATTTTATGGATTTGGATACTGTAGATTAACAGAATGTCATAAAGCGATTCATATATTTAAAACC TTTGGAAACATTGTTCAAGGTAGCTACTACACAACCGAACTAAAC Right flanking sequence: Indices 7249184 -- 7249683 GCGATGAACGGAAACACGAAAAAGGCATCAGACAAATCCGACGCTGGGGGTTTCAGCCCTAAAAT TCGAAATATTAATCATTGTAACTGGCGTTCCTCAACGATTATTGTATTGGAGCAAAATGACTTTC CTGATTCCATAAGACTTTTACAATTTTGAGTAACCTATTTTATAAACATATGCCTCGTTTACGCA ACATCCGGTTTCAATTTCGCGGGTGTGAATTCTCTGGTTCTTTTCCTCATAATTATCCATAAAAC AATGCTGGACATACCGAGATGGCTATCTGTAAATGTGTTGCAATAATTCGAGATGACAATCATTT TTATGCTACAACGCCTGTTTGCATAATAAATTGCAGTTGAAATTTCAATCAAAGGGAAATACAAA TGTTACATGTTTAATTATGTACACAGACAATGTAGTTAATATTAAAAGAGAGGTTGAATAAAAAC CGTATCTAGTTTCTTCTGTTAAGAATAGATTCAATTTCCCAACTG Found at i:7251422 original size:8 final size:8 Alignment explanation
Indices: 7251405--7251423 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 7251395 TTCCGTTAAC 7251405 ACTCAAAA 1 ACTCAAAA * 7251413 ACTGAAAA 1 ACTCAAAA 7251421 ACT 1 ACT 7251424 AAATTTCATA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.58, C:0.21, G:0.05, T:0.16 Consensus pattern (8 bp): ACTCAAAA Left flanking sequence: Indices 7250905 -- 7251404 TATATTTCAGAATAAATTTTATTAAGCAAATAAGAAGCCCTTTTTTGTTTTTTAGATTTATAAAT AATTTCCAAAACTGAAGAAAAAATAATTAATCCCCTGGAGAAAAGCCTATTGACCTGAAAGAAAA GAAGCCCATTGATAATTTTGATCTGCAAATATTTTTTAAATCCTTTTTTGTTTTCTTTTTTGTGT CTGGGAAAAAGAAAAAAACATTTCCACATTTTTATCCATGCATTTTTTGGCGCTTTTTTGGCGGT TGGACGTGATTTCTGGATTTTGGGTTAGTTAAAAACATGGCGAGTATGAAGTAGAACATCCATTT TTGAAAGAAAGAAAAACGAATATTATTCTTAAACCTTTTACATTTTAATGCGATGATAATAGTAG GCTTAGAATAAACTGTAACCATGATTCGAATGCAGACAGAGAACGGCTGAGGTCAGTGCTAGAAA ACTGTTAAAAAGTGCTCTAGAAATGTTGCCGTGTTTTCCGTTAAC Right flanking sequence: Indices 7251424 -- 7251923 AAATTTCATAAAAAAGATAGCTCAAAAGTTTCCTAAATATTTTAACTGAGATTTAAATTTAAAAG ACCGAATTCTTATCGCAAAACCCTATTAACAGAACACATTTCCTTAGCACTATGAACTTTCAAAA ATTAATAGGAATGTTGACATACTTTCTTTTCAAGTTCTAAGAAAATAGTTCACCATTTTGTTATT TCTGAAAACAACAATAAATTATTTTGTTTTCTTTAAAAAATAATGTTTTTTTGCACCACATAAGT CTTTTTCCTTCTGAGAACTGAGAGAAAAAAAGTCATCAGAAAATAATGAAAGCTGAAACAGAAAG AAAAACCGCCATAAAATGTCTGCTTTTCAGTTCTAACTGACCACATCTCCCATAGTTTTATTGAT GATCATTACTTTGAATTCTTCGTATTACGATTACTACTTGTTCTGAATCTTATAGAAGTATGTTT ATATAAGCTCAAAATTGAACTAAAATTTCAAAATCCTAAAATAGA Found at i:7252361 original size:8 final size:8 Alignment explanation
Indices: 7252348--7252366 Score: 38 Period size: 8 Copynumber: 2.4 Consensus size: 8 7252338 TTCCAAAACA 7252348 TTCATTTT 1 TTCATTTT 7252356 TTCATTTT 1 TTCATTTT 7252364 TTC 1 TTC 7252367 TAATAGTTTT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.11, C:0.16, G:0.00, T:0.74 Consensus pattern (8 bp): TTCATTTT Left flanking sequence: Indices 7251848 -- 7252347 TACTTGTTCTGAATCTTATAGAAGTATGTTTATATAAGCTCAAAATTGAACTAAAATTTCAAAAT CCTAAAATAGAAATTCTAAATGAGAATTTATTTTTTCTGATCAAAATTGTAGTCAGACAATGTGT GTAATTCCATGAATTTGAGTGTGACTTGGCAGTGTTTTTCACTACCCTCAAAAATTTTCAAATCT GATTTCAAATTACCAGATTTATTGAAAAGTTTGAAATATTTTGGTTATTCAAAGCTATCTTAAAC TGTGTCCGTTGATTGGGAATATAAATATTCTTTGGAACAACCTCGAGTACTTAATGAAAATTGAA ATTTGCCGAGAAAAATTTGCATAATGTTTTTCGGCAAATGACAACTTTTAGTAAGTATTTGAGAT TATTTTCATATTTCAAAACAAGAGTAAAAACAATAAAATAATTATATACACTGATACATTTATTT TGGATTAATTTTGAATTTTCAAATTGACACTACCGTTCCAAAACA Right flanking sequence: Indices 7252367 -- 7252866 TAATAGTTTTAAATTAAAATTACAACGTTTATCTGTGAAACTAACAAATCTTAAAACCCGTTAAT TCCAGACATTTCAACCAATCATCACTTATTCAATTGTAGGAAGTGGAAAATCAGTACTCTGATGA CGCAATCTCCATGTTCTGATTGAATTTTTTGAAGTCTTCTTCTCCTCCCAAAGTATCTTTACGCG GTCACTTTTACAAATACGTTCTTTAGCCGCAAAATGATTGCCGCTTTTCTCTGCAAACAAATTGC GTACTTGTTGGGTACTCATAACTTCAACTACACCAATCCCTACTCTAAAACAAAAGTTTAGTGAT GAGGACGGTCGTTCCTAGTAATTTGCACGTTTTCTTGATCTGAAATTCACATTCGAAACTGCTTT AAAACTTTAGATTTTCTGCCTGAAGTTCTTGAATTAGTTTTAAAAAACAGACGGAAACCTTTTTT TTTTTAAATATTTTAAATTTTAATTATAAGATTTGAACTCATTGA Found at i:7252841 original size:7 final size:7 Alignment explanation
Indices: 7252831--7252844 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 7252821 TTTTTTAAAT 7252831 ATTTTAA 1 ATTTTAA 7252838 ATTTTAA 1 ATTTTAA 7252845 TTATAAGATT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57 Consensus pattern (7 bp): ATTTTAA Left flanking sequence: Indices 7252331 -- 7252830 ACTACCGTTCCAAAACATTCATTTTTTCATTTTTTCTAATAGTTTTAAATTAAAATTACAACGTT TATCTGTGAAACTAACAAATCTTAAAACCCGTTAATTCCAGACATTTCAACCAATCATCACTTAT TCAATTGTAGGAAGTGGAAAATCAGTACTCTGATGACGCAATCTCCATGTTCTGATTGAATTTTT TGAAGTCTTCTTCTCCTCCCAAAGTATCTTTACGCGGTCACTTTTACAAATACGTTCTTTAGCCG CAAAATGATTGCCGCTTTTCTCTGCAAACAAATTGCGTACTTGTTGGGTACTCATAACTTCAACT ACACCAATCCCTACTCTAAAACAAAAGTTTAGTGATGAGGACGGTCGTTCCTAGTAATTTGCACG TTTTCTTGATCTGAAATTCACATTCGAAACTGCTTTAAAACTTTAGATTTTCTGCCTGAAGTTCT TGAATTAGTTTTAAAAAACAGACGGAAACCTTTTTTTTTTTAAAT Right flanking sequence: Indices 7252845 -- 7253344 TTATAAGATTTGAACTCATTGACATTTTTTTTATATAACCTGTTCTCGTCAGGTCTCAGCCCAAT CCACATTTTTAAGCTACAGTACTCGAAGATGTTTCGTAATTTTCTCCAATTTTTTAAATCTTTTG TTTAATATTTATGGTTACGGCAGCTCAAAAGTTTTGCTCGTGCCGATACCTAAACCCTTGTTTCG GAAAATTTATTTTTTGCAAAAAAATAATTCAACATTTTTTAGAAACTCTAATATTTATGCCAGAG CAAAACGGAGTTTTATTTGAATTTTCTACTGCATTTTTTGGTAATTAATTTTTGCTCTATAACCC AAAAAGTGCCTCTTTCCTTTTCCATAATGAGCAGTAGAATGTGTGCATATCGTTTTCACACATAT CCAATTTCCATCTTCGTATTCAAACGCTATTCGGAAACTTGAATCTTTCTACTTTTTTATGTGTG TGTGCTCTTTTATTATGCATATGTGCTCTTTTTTTTTATTTCGAG Found at i:7254078 original size:7 final size:7 Alignment explanation
Indices: 7254068--7254084 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 7254058 TCCAATTATC 7254068 TTTCATT 1 TTTCATT * 7254075 TTTCCTT 1 TTTCATT 7254082 TTT 1 TTT 7254085 TTTCCTCATC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76 Consensus pattern (7 bp): TTTCATT Left flanking sequence: Indices 7253568 -- 7254067 GCACTTAACTAAGTCCCTACTCATCTTTTGGCTCAAAAGTCCTTCTTTAAAATTAATTTGCTAAA CATTTTCGGGAAACTTTGCTCTTCAAAGAACTCTAGTCTTTGGATCTTATTTTTCTCTCCTGTTC GCCTTGTGGTCGGAAGCCAAACAAAAGAGTATGCAGGTCCATAGTTAGTAATCGAATCGAAAAAG TTTTTTGGAAGATAAAGAAAAGAAGAGAGAAGATGCATTGAGCTTCTTCTCAGTCTATGAGACAA TTTGATCATCTTGGAACTTTCGGTTTCACTCTTTTTTTCTCTCTTTTTCCTCTATCTCATCATTT TCTGTTTCAACCATGGGGGTCATCCCTTTTTAGGTGGAAAACTACATCTTGTAAGCTGGAGGCAT CTTTAAACATGTGTCAATCCTTTTTTAGCCAAAAGTTCAAGGCTAAACATCTAGAAATGTATTTT TCCAGACATCTATCAACTCGACCTCCTTACCAAATTCCAATTATC Right flanking sequence: Indices 7254085 -- 7254584 TTTCCTCATCCAATTATTCAAGGGGCTTACTAGTTAGTGTGAAAGTGTGAAAAATGATGAAGGTC AATTTAATTTTTCAGTTAAAATTTCCCATAATTTTCAAATGTTTATTAATGAGAGGAAAGTTCAA AGATGGTCATTCCCTTTTGATCACATTTTGGACCCCGAGGCTATTTTTCCTTGTCTCGAGACTTT TCTTGTTTGCTCCCAGAACAAATTTCCGGAATAATCCATTAAAAACTCTTAAACAGTCTAGAAAA ATTTTAGGGGAAAACATGTTGACCCGATTTATTTATTTTTATTGCTTACTAGTCAAGAAAAATCA TTTTAAAGAAAGGTTCAATGCATAAATGTTAAGAAGTGTGTGGCCATTCGGCTAATTCTTAGGCT TACAATTAGGTAGAGGTTCAGAATTAGGCTTAGCATCCCTTATCCTCAAGCGTTTATTTTTTGAA GACAAAAGTGTAATAACGGCTTAATTTCCGATACAGCAGGCTTTT Found at i:7254133 original size:8 final size:8 Alignment explanation
Indices: 7254120--7254136 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 7254110 CTTACTAGTT 7254120 AGTGTGAA 1 AGTGTGAA 7254128 AGTGTGAA 1 AGTGTGAA 7254136 A 1 A 7254137 AATGATGAAG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.41, C:0.00, G:0.35, T:0.24 Consensus pattern (8 bp): AGTGTGAA Left flanking sequence: Indices 7253620 -- 7254119 TTAATTTGCTAAACATTTTCGGGAAACTTTGCTCTTCAAAGAACTCTAGTCTTTGGATCTTATTT TTCTCTCCTGTTCGCCTTGTGGTCGGAAGCCAAACAAAAGAGTATGCAGGTCCATAGTTAGTAAT CGAATCGAAAAAGTTTTTTGGAAGATAAAGAAAAGAAGAGAGAAGATGCATTGAGCTTCTTCTCA GTCTATGAGACAATTTGATCATCTTGGAACTTTCGGTTTCACTCTTTTTTTCTCTCTTTTTCCTC TATCTCATCATTTTCTGTTTCAACCATGGGGGTCATCCCTTTTTAGGTGGAAAACTACATCTTGT AAGCTGGAGGCATCTTTAAACATGTGTCAATCCTTTTTTAGCCAAAAGTTCAAGGCTAAACATCT AGAAATGTATTTTTCCAGACATCTATCAACTCGACCTCCTTACCAAATTCCAATTATCTTTCATT TTTCCTTTTTTTTCCTCATCCAATTATTCAAGGGGCTTACTAGTT Right flanking sequence: Indices 7254137 -- 7254636 AATGATGAAGGTCAATTTAATTTTTCAGTTAAAATTTCCCATAATTTTCAAATGTTTATTAATGA GAGGAAAGTTCAAAGATGGTCATTCCCTTTTGATCACATTTTGGACCCCGAGGCTATTTTTCCTT GTCTCGAGACTTTTCTTGTTTGCTCCCAGAACAAATTTCCGGAATAATCCATTAAAAACTCTTAA ACAGTCTAGAAAAATTTTAGGGGAAAACATGTTGACCCGATTTATTTATTTTTATTGCTTACTAG TCAAGAAAAATCATTTTAAAGAAAGGTTCAATGCATAAATGTTAAGAAGTGTGTGGCCATTCGGC TAATTCTTAGGCTTACAATTAGGTAGAGGTTCAGAATTAGGCTTAGCATCCCTTATCCTCAAGCG TTTATTTTTTGAAGACAAAAGTGTAATAACGGCTTAATTTCCGATACAGCAGGCTTTTTTCTGAT TACATAAAAACCATCTAGAAAGACTAATAGAAAAACTAATCAGGA Found at i:7255698 original size:7 final size:7 Alignment explanation
Indices: 7255688--7255704 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 7255678 TAAGAAACAA 7255688 TTTTAAT 1 TTTTAAT * 7255695 TTTTACT 1 TTTTAAT 7255702 TTT 1 TTT 7255705 ATAGCTCAAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76 Consensus pattern (7 bp): TTTTAAT Left flanking sequence: Indices 7255188 -- 7255687 GTGTAGTTTTTTTTTTTCAAAATAAAAATAGAATCATGATCTATATTTATCTAGTAATTCTTCTC TCATTCAATTTTCTATACAAATGTCATTTTTAACTTTTCCTCCTACATTTCCCAACTCCTAAATA TCTTCTCTTCCTATTTTTATCCGCCTCCTCACTGACCTCCCTATTTTTGGTGGGGTCCCAAAAGA AGCGTGGAAAAAACATAGGAGAAGCATTGCCTTGAGGCGTATTTTTGAGCTTTTTGAATCTCTGT GTTGACAATCAGAAGTCATCATTGTCCCTTTCCATGTTTTTTGACTTCTCCGCCCTTTCAAAATT CAATTAAATGCGAGGGTGGATAAGAGATAGTTGAGAAAGTTCAAAGAGATGCCCCTCATTTTTTT TTTGAGATTTTTAGTATCCATCCAATGAACTTGTCTATCAAATTTCAAGTTGAATGAATTTGGAA CTAGTTGATTTTTAAATTTAACTATAGTTAAACGTTAAGAAACAA Right flanking sequence: Indices 7255705 -- 7256204 ATAGCTCAAAGAATAATGAGATTTTTATATATTTTCTGATCCTTTTTCCGATTTCAAATATTAAT TATTGTTGCGACCGATATCGTGTGGGTGTTCAAATTCTCTAAAACCAAGCCGCAAGGTGCCGGTG CGGTTGTCAAACAAAAATTACTGTTGAAAATCGATTAACTTTCGTTAACAGATTTTTCTTCCATA TGCAGAAATGCGGCTAAAATTGTAGACACTCTCATACTGTAGAGAACGAATTTCAGTTTTCTGTA TCCAACTGATATCCAGATCATCCTTAAAATGAGATTCCTCAAGATTATCTTTAATAATCTTAAGT ACTACATTATTTTTCATTTCTCTCAAAAAACTCTCTCACACAACAAATTTGTCCAGTATGTCCAA TGTCCAACCACTTTTCCATTAATATTTCAACATCTAGAGCTGCCAATTTATGAGATTTTGCTGTT TTTCCGCAAAAAAGTTAACTTTTCCAATTCTAGGTAACCGATTTC Found at i:7256099 original size:7 final size:7 Alignment explanation
Indices: 7256087--7256101 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 7256077 TTTGTCCAGT 7256087 ATGTCCA 1 ATGTCCA 7256094 ATGTCCA 1 ATGTCCA 7256101 A 1 A 7256102 CCACTTTTCC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27 Consensus pattern (7 bp): ATGTCCA Left flanking sequence: Indices 7255587 -- 7256086 TTTAGTATCCATCCAATGAACTTGTCTATCAAATTTCAAGTTGAATGAATTTGGAACTAGTTGAT TTTTAAATTTAACTATAGTTAAACGTTAAGAAACAATTTTAATTTTTACTTTTATAGCTCAAAGA ATAATGAGATTTTTATATATTTTCTGATCCTTTTTCCGATTTCAAATATTAATTATTGTTGCGAC CGATATCGTGTGGGTGTTCAAATTCTCTAAAACCAAGCCGCAAGGTGCCGGTGCGGTTGTCAAAC AAAAATTACTGTTGAAAATCGATTAACTTTCGTTAACAGATTTTTCTTCCATATGCAGAAATGCG GCTAAAATTGTAGACACTCTCATACTGTAGAGAACGAATTTCAGTTTTCTGTATCCAACTGATAT CCAGATCATCCTTAAAATGAGATTCCTCAAGATTATCTTTAATAATCTTAAGTACTACATTATTT TTCATTTCTCTCAAAAAACTCTCTCACACAACAAATTTGTCCAGT Right flanking sequence: Indices 7256102 -- 7256601 CCACTTTTCCATTAATATTTCAACATCTAGAGCTGCCAATTTATGAGATTTTGCTGTTTTTCCGC AAAAAAGTTAACTTTTCCAATTCTAGGTAACCGATTTCCGGAAAAAATTGGCATTTCCCAAGGAA ATTGGATTATTTTTATGATTTAAAATAACTTTTTTGATTCTAAATTTGTTTGCTATTTGGCAGTT GGAAATATATATACATATTTGTACCCATTTTCTCAAAAGTAGCTTTTGTGATAAAGTATTGATAC TTGTCTTTCTTGAGTTTAGTCTTTTCAATTTATATTTACTTTAATAATGACTAACATTTCAAAAG GACGTTGTATGATTGAACTTTTTAGAAAGTCGCAAAATTTCAAACAGTTTATAAAGAGTTTGGAA TTTCAAAAATTAGACTGGAGTCCTTGGTTCCTCTTAGTTTTTCAAAAGTGACCACTTTACGGAGT CTACGCAAAACATGGATTTTCTGAAAATAAAAATTCCAATTATAG Found at i:7257459 original size:9 final size:9 Alignment explanation
Indices: 7257442--7257460 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 7257432 TTTTCCGTAG * 7257442 AAAATTTCA 1 AAAACTTCA 7257451 AAAACTTCA 1 AAAACTTCA 7257460 A 1 A 7257461 TTAAATTTAC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.58, C:0.16, G:0.00, T:0.26 Consensus pattern (9 bp): AAAACTTCA Left flanking sequence: Indices 7256942 -- 7257441 TAATTTATAATAATTTTTCAAATTCAAAACGTGTCCGGAAGATATCCCTTCCCAAAAACTGTAAA TGTTAGTTCCACACAAAGTTCCATAGAATGTGCCCCGCAACCATTCAAAATTTTTTTTTCTTCAA GGAAAACATAGTTGATTCGAACTTTTAGAAAATTAGATTCCTCATTCAGCGTATTCTTAAGGAGC GAGAAATTTTCAGAATTACTTTGTCTGAAAAACTCGATCGCCGTGAGAGTGCATTGGTCCTGTGA TGTATGCACTTTGTTTCACAATGTTGACTCAACTAGACTCAAGGTTTTGTCTGATCTTTTGATTT TTAACATTTTTTAGTGTTAAGCTTTTAAAATATTTTTTGCTGATTTTTTCGCGTCTAGAAAACAT TTTCTGCCGAAGTATGTCAATTTACCGTAGAATTTTTGCAACTTTCTGACAACATTCTGATGTTA GTCTCTTAATGCTTTTCTGTAATTTTTTTGAAATATTTTCCGTAG Right flanking sequence: Indices 7257461 -- 7257960 TTAAATTTACTTCCAGAAAGTAAAATTATAATTTCTTCAGACTTCTAAGTTTTGAAATCCCTAAA ATTATATGCAAACTTTCAGAAGTTGTACTCCGAAATTCAATAATTTCTGAGTTGAACAGCCTTCC GAAAAGTGTCAAAAAACAAGGAACATGGCGTGTCAAACTGCATTTTCCATAGACTTTGAAGAAAA ATTCGTTCCTCGTTTTCTTTGTCTCGATAAAAAAGGGATTGCCCGATACTCATTCAATTCATGAG AAATCCTCTCGCAAGTTTTTTGTTTTTTTTTTCAGAAATTCCGAATTTACAGACGCTGTTGACTG CCGTCTAATGATTTACGTCATTCGACAGGATTTTCATTTTTTGTGTCTCGTTTTCTATTCAGATT CATATAATACTCATTTATTATTCTTGTGTGCTTGCCACATGTTTCCGAAATTTTCAACGAAAAAT TCATAAAGTTCCGCATTTCTTGACATATGTTCAAGGTGACGGCAC Found at i:7258883 original size:8 final size:8 Alignment explanation
Indices: 7258870--7258885 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 7258860 GTAATCGATT 7258870 TCCAATAC 1 TCCAATAC 7258878 TCCAATAC 1 TCCAATAC 7258886 CTTTCACCTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25 Consensus pattern (8 bp): TCCAATAC Left flanking sequence: Indices 7258370 -- 7258869 TTTGACACCCCACACAATCTCTCAATTTCAAAAAATAATTTTCAAAACTCCCCCGCGCTTCCATT TCCTTTTGGCATTTCATCAGTCTGATTTCTTTGCCAGTTTTTTGGCAAATGTTCTCACAAGTATC AAATTCAAAACGTCTCTTCCCTTTGCTTTCATTTTTTTGATTATTCCCAGCTGAAGAAGTCTTTA CGATTTTTGGTTCAATTTTCAAGGACTCGATGAGTGTTACGAAACTTTACGTACTTTACTTCTGT ATAGGGATCGGCTGCTCAAAAAGGTTGCGCGGAATTTGTTGTGCCATGTTTTTGCTGCGGCGTGT TCACTTTCTAAATGTGACAACGTTGACAATTAGTTGTTTTCTGATTTATCAGACTTCTTTCTGAA AATTGTTTTGAGTTTCTTAGAGTTTTGGTTCCTAAAGTTTTGGGCTAGAAATCGACTGAAAATGT AATAGCTCGAGCAACAGATATATATCTCATTTTTCGTAATCGATT Right flanking sequence: Indices 7258886 -- 7259385 CTTTCACCTTTTTAAAATCTTATAATTTTCAGAATAATCCACAACAAAAATGGGAAACGAAAACT CATCACTTGTAAAAATTCGAAGAGGAAGCAAAGAGCCAAATGTGATTATCGAATGTGTCGACTCG AAAAAGTAAGTTCTAGATTTCGTGATTTTTGATTTCAAATTGAAGAACAAAAAGAGATGAGGTCA AGTTTATTGAATTCCATTAAAGTCTAAACGATTTAGAGGTTCAGCGGGTTAAGAGCTCTTCACTT TTTTCTCTACCGAATATTTTTTGCACATGTTTAAGAAATGAGTTTCACAAAAAAATAAAATGAGT TCTCGTTCATTGAGAATACGTATATTTTTCATAATTTCCCAAATTGCACTACTTCGTAGTAAAAA CCGTGTTTTTTTGACACGAATAAGCAACAATTTTGCCAGTTAGCAAATTTTTTAGAAAGGCGATC TCAGCCTATATTAGCCTGACATAGTTGAGCATCGAAATGCAACTA Found at i:7260009 original size:10 final size:10 Alignment explanation
Indices: 7259994--7260015 Score: 37 Period size: 10 Copynumber: 2.2 Consensus size: 10 7259984 TTTGTTTTCC * 7259994 TAGATCAGTT 1 TAGATCAATT 7260004 TAGATCAATT 1 TAGATCAATT 7260014 TA 1 TA 7260016 TATAATATGA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41 Consensus pattern (10 bp): TAGATCAATT Left flanking sequence: Indices 7259494 -- 7259993 AATCTATATGTTGACGAGATCCTTCCCTTTAAATTTTACCTTCACTTTAAATTTTACTGAAATTC TGAAAAACTCATGCTCACCAGTTGGCACCGCTAATATGAACTTCTGAAGAAACGTTCACACACTC TAATATATGTTTATTTCTTATGCACCAATCTTCTTTTTTCCAAGTTCAAACATTAAAATTGTATA CATTTTCTGACTATTGAAATTGAAATTCTCTCATTTAATTGGGAATGTGCAAAAACTCACGTTTT CTTCGTCTTCTGAAAATAATTTGCTTGCGAATATTTTTCTTCACAAATCCGACGCTTCACTTTTT GAAAATCTTATGGAGCTGGTGTTCCAAAAGTGAGAAATATAGAAATTGAATTTGTATTCTTTGTA CTTTTTTGTCAAACTGGGAAGATACACAAATAAGGATATCTAATATAATCATTTTCCAACTTCCG TGTGTATTTGATATATGCAAATTGGGTTTCCCCTATTTGTTTTCC Right flanking sequence: Indices 7260016 -- 7260515 TATAATATGACTGAAAATTATCTATTTTTAGAGCAAAATTAAATTTATTAGTTATAAAACTACTT AACTCCCCTAACTTTCTGAAAATTTTTTTGGAAAAGATAGGGATTTCAAATGTTGTGTCTTTTCA TGAAAATACCAAATTACTGATAAAACCTGAAACATCACATCATAAGTCAAGCGGAAATCCAAAAG GTTTTCAACTGGAAACTATTGACGTCTTATTTGTTGAAATATTATATTTCCTCTGTGGTATATCA ACTACTTCTGATCACATATCAACGTCAGTTTATGACAAAAAATGTTGAGAAGAAGAAGCCATTTT CAATTATTTGCAAAGTGGACAAGATTTCTCACTTTGTCATTGATTATTTTCAGTTATAGCCACTT AGTTTCAACTTTATTTTTGAATTTTGCGATTTGGAAAATCATCATTTTCTAGAAATTCAGATATT CTATCGATAGCAATGATTGTTTTATAAAAGTTGATTATCCGCCTA Found at i:7261319 original size:10 final size:10 Alignment explanation
Indices: 7261300--7261319 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 7261290 ACTGAAAAAA * 7261300 TTAAATTTTT 1 TTAAAATTTT 7261310 TTAAAATTTT 1 TTAAAATTTT 7261320 GACTGCACAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65 Consensus pattern (10 bp): TTAAAATTTT Left flanking sequence: Indices 7260800 -- 7261299 ATGATTCAAAATACATGTTCAGTATGGTTAAAATTATCATTAGCACTTATTAGCCGTTTTGGACG TGGACTATTTGGCTCATGTTTATCAAGCACTGAGTGAACATCTTCATGGAATAATTTCTCACTAA AAGTGATGGGATTATTTTGATTGTTGTTTCTAATTTTATATAACAATACTTGCATAGTACAAATA CAAACTTCGTTTTACTTGCTGATTTCTCAATCATAAATTAGAAGCCCAACACTATAAATGTCGGG TATCACATGAGGTTGGCCATGTAGATTGTTTGAACGAAGAGGCCACCAGTAAAGTTTGTTAATTT ATTTATGATACATATATCCACTTCTAAATAACACTAGACTTAATTATCTATCTTTCATTCCGAGG ACTAAATGGACCAATATATGCTTCAATCACTCCTATAGGCAATTGTTAAAAGTACAAAATAGTGT GGTTACAATGTTCTCAATTATAACATCTCCCCATGACTGAAAAAA Right flanking sequence: Indices 7261320 -- 7261819 GACTGCACATGATGTGCACTTATCGTAAACATACACGATGCACCCGTTCCATTCCCAGCGGCTTC ACAGGAATCAAAAACTCGGGCGCCATATTTAATTGGCCTCAACAATTGTGTTTAGCTACAGTAGT TTTTCCGGAATAGTTATACTAAATTTAAAATTATTTAAAACAAGAGTGTGGAAGCATCTACTTGA CAGTATATATTAACCATTACTTTAAGCTCTGGGTGGTGTAGAACAAACTCCAGAAGGAATGGTGT AAAAAGCTGATTCTATAGTTACTCGTTTTTCTAAACAACCGCGGGGGCCTGGGATGCCAGAGTTA TGTTGCAATAAGGTGACAAGTTGGTGACATGCTACCACTAATATAAAATCTTAGAATTGTCCGAA AAAGTTTTGGGAATAATTCGAAAAAAAGTACAAAAACTTATGGGACGACCTGATACTTTATTACG ACTTAAGTTGACACGATAGAAAAACAGCAGACTTCTATTGAAAAA Found at i:7262043 original size:7 final size:7 Alignment explanation
Indices: 7262031--7262046 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 7262021 GTCTGAATAT 7262031 TTTTCAC 1 TTTTCAC 7262038 TTTTCAC 1 TTTTCAC 7262045 TT 1 TT 7262047 CCACTTTAAC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.12, C:0.25, G:0.00, T:0.62 Consensus pattern (7 bp): TTTTCAC Left flanking sequence: Indices 7261531 -- 7262030 TTACTTTAAGCTCTGGGTGGTGTAGAACAAACTCCAGAAGGAATGGTGTAAAAAGCTGATTCTAT AGTTACTCGTTTTTCTAAACAACCGCGGGGGCCTGGGATGCCAGAGTTATGTTGCAATAAGGTGA CAAGTTGGTGACATGCTACCACTAATATAAAATCTTAGAATTGTCCGAAAAAGTTTTGGGAATAA TTCGAAAAAAAGTACAAAAACTTATGGGACGACCTGATACTTTATTACGACTTAAGTTGACACGA TAGAAAAACAGCAGACTTCTATTGAAAAATTTTATATTTTTATGCCTGAAAATATAGATATTTAC TTCTAAAATAACACTGGAAATATGCTTAATTTGTTAGTTAAGTCCAGTTAGTTAAAAAATTACCC AATCTTTTTGTAGTTATGAATTTGGAGCTTAAAATCTGAACCGGCCCAGAAAACTAAACTTTTTA ACTTTTCTCGATTTTTTCCAGACAAGTGCGTCATTGTCTGAATAT Right flanking sequence: Indices 7262047 -- 7262546 CCACTTTAACTTCCACCACCCTCAACTCAAAATCCTTCGATTGTTTTGCTCTTTTCTTACCCATT TCTCCTGGGGGCGCCGTTCACATGGTCTCGGATCTCTCAATCATCCCTCAGGCGTCTGAACAAAC CACTTTTTTTGCGGAGAAATGACGACAAAAAACAGATAGAAAGAAAAACTGATGAATATTTTCGT GGTTCAGAACATAGAACAATTTTATTGTGCTTTTGATCAGAATTTTGATTATGAGTGGTCTATGT TTTAAAGTTGTTCAAATGTCACAAATTTTGTATGTCCCTGTGATTTCAAGGATGTCTGATTGTGA GCAATGAAACTCTCCTGTAGTGTATGGTTACTGTTAGGATATTATGTTGCAGCCAGGCGTTGAAG ATGTTGCAGTAGGCGCAAATCACCCTGTTTTTAGATTTGAATTACAATTCGGTGCATGTGTTTAA AGTCACCAATAGTCCCAATTCCAAGAACTTCCCAGAAATAGGATA Found at i:7265182 original size:9 final size:8 Alignment explanation
Indices: 7265168--7265195 Score: 38 Period size: 9 Copynumber: 3.2 Consensus size: 8 7265158 TTGTGGTGCC 7265168 TCTCATTCA 1 TCTCA-TCA 7265177 TCTCATCA 1 TCTCATCA 7265185 TCATCATCA 1 TC-TCATCA 7265194 TC 1 TC 7265196 ATTCCCATCA Statistics Matches: 18, Mismatches: 0, Indels: 2 0.90 0.00 0.10 Matches are distributed among these distances: 8 5 0.28 9 13 0.72 ACGTcount: A:0.25, C:0.36, G:0.00, T:0.39 Consensus pattern (8 bp): TCTCATCA Left flanking sequence: Indices 7264668 -- 7265167 TCCAAAACTGATTTAAAAAGTGTGAAATAGATCCAAATATCTTTCAAAAATCATTAGATACGTCT CATTCTTATCTTTCTAAACCAACTTTTTTCGTTGGCAATTTTAGGAACATTGCCTCTTGAACCTG CAAAATTGTTATTTATATCTCATCCGTTCTGAATCATCGACTCAATTTGAGTTTTTCATTCTCCG GAAACCTCAAAAATGACTTTATTTTTCCGTTTTATTACCAAAAAACAAGTAGCTCCAAATTGCTT CTCAGTGACTGACTCTACCCGGAAAAGGAGAGGGAAACCCGCAAAAAACGTCTGGAGAATATAAA AAGAAGCTTGAGGAAATATACTTCTTTCTTTATTTCTTTTCAATACATCTCTATCTTCAATGCCA TTTCAATAGTAATAACCTTCTCCTCCTTCATCTTTTTCTACCACTACCACCCCCACATGCTGCTC TCTCTCTGTTTTTTTTATATTTTATTTTATAATATTTGTGGTGCC Right flanking sequence: Indices 7265196 -- 7265695 ATTCCCATCAACATCTTTATATGAGCACACTCAATTTCTCATTTTCAGTTTCCAATTTCCGACTA TCAAGCGACGGTTCCGGTGATTCATTGTTAAGTCCATTGACTGCTTCATCTAACGATCGACGCAG AAGTCGAAGTTTGTGTTCTGCCCAAATGAAGGACGACGCACAGGTAAGGCTCTTTGATGCTTAAT GTGAAGTACGGTCATTCAAGATTTTATTTTAACTTAACCTAAATAGTCTGAAGTTCAGAAATAAC AACAAAACATTACTTTGAAAATTTGGAGAAAATTAGCAATTCGCTCGGCCAAATTTTAAACCAAT CAGTATTCGGAGTTCAAAGATGTTGGATTTGGTTCGGAAAACCCCAATTTTAAAAATGTCTAATA TTTCTATTCGAACTTCTTCCAAAACACTTTTGATCCAAACAACGATTTCGAGCTTCGCACGTCAG TCTGATGATAGGCTCAAGAGTTGAAGGAGAAAATTGCCGATTTGT Found at i:7265736 original size:8 final size:8 Alignment explanation
Indices: 7265725--7265741 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 7265715 GATTTGCACA 7265725 ATTTAGGG 1 ATTTAGGG 7265733 ATTTAGGG 1 ATTTAGGG 7265741 A 1 A 7265742 AAGATTAAAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.29, C:0.00, G:0.35, T:0.35 Consensus pattern (8 bp): ATTTAGGG Left flanking sequence: Indices 7265225 -- 7265724 CTCAATTTCTCATTTTCAGTTTCCAATTTCCGACTATCAAGCGACGGTTCCGGTGATTCATTGTT AAGTCCATTGACTGCTTCATCTAACGATCGACGCAGAAGTCGAAGTTTGTGTTCTGCCCAAATGA AGGACGACGCACAGGTAAGGCTCTTTGATGCTTAATGTGAAGTACGGTCATTCAAGATTTTATTT TAACTTAACCTAAATAGTCTGAAGTTCAGAAATAACAACAAAACATTACTTTGAAAATTTGGAGA AAATTAGCAATTCGCTCGGCCAAATTTTAAACCAATCAGTATTCGGAGTTCAAAGATGTTGGATT TGGTTCGGAAAACCCCAATTTTAAAAATGTCTAATATTTCTATTCGAACTTCTTCCAAAACACTT TTGATCCAAACAACGATTTCGAGCTTCGCACGTCAGTCTGATGATAGGCTCAAGAGTTGAAGGAG AAAATTGCCGATTTGTAGTTCAACCATCATTTTTTGATTTGCACA Right flanking sequence: Indices 7265742 -- 7266241 AAGATTAAAAAGTTTCTGTAATCAAATTCTCCTGAATTCTGAGAACCTTCACAAGAACCCAAAAA GTTGTTCCTTGTTTAACCGAGGGCACCTTCCATTGTCAGAATACAATTTGTTCTCCTCTTCTCTT TGCAATTTAATGGAAAAAAAGGAAAATGGAAATCTTGAAATCAAAATCCCAGGAGACCATCATGT TCTTCTCTTTCTACTTTCTTCAAGATGTGCTAACCTTATTATTCTCATTATCCTAAAATAGACAG AAAAGAGTGAGAGAATAAGAGATAAAAAACAGTCAGACATTCTATTCCATCCTCCTCCCCCATAG ATCATCCTCAATCCAAGATTACAAGGCAAATATATTTCGTTTTGATCATTTTTCATATTTGTTGA GCTTCATCTTTGTTGATCTTCAGCTTCAAAGTTCTTAATTTGTTCCCTCCACTGTTTCATGTCTT TCGGGCCATCAGACTCCGGAAATTCGGTTTCAAAGAAAACGAAAA Found at i:7265902 original size:7 final size:7 Alignment explanation
Indices: 7265887--7265903 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 7265877 TTTAATGGAA 7265887 AAAAAGG 1 AAAAAGG * 7265894 AAAATGG 1 AAAAAGG 7265901 AAA 1 AAA 7265904 TCTTGAAATC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.71, C:0.00, G:0.24, T:0.06 Consensus pattern (7 bp): AAAAAGG Left flanking sequence: Indices 7265387 -- 7265886 TAATGTGAAGTACGGTCATTCAAGATTTTATTTTAACTTAACCTAAATAGTCTGAAGTTCAGAAA TAACAACAAAACATTACTTTGAAAATTTGGAGAAAATTAGCAATTCGCTCGGCCAAATTTTAAAC CAATCAGTATTCGGAGTTCAAAGATGTTGGATTTGGTTCGGAAAACCCCAATTTTAAAAATGTCT AATATTTCTATTCGAACTTCTTCCAAAACACTTTTGATCCAAACAACGATTTCGAGCTTCGCACG TCAGTCTGATGATAGGCTCAAGAGTTGAAGGAGAAAATTGCCGATTTGTAGTTCAACCATCATTT TTTGATTTGCACAATTTAGGGATTTAGGGAAAGATTAAAAAGTTTCTGTAATCAAATTCTCCTGA ATTCTGAGAACCTTCACAAGAACCCAAAAAGTTGTTCCTTGTTTAACCGAGGGCACCTTCCATTG TCAGAATACAATTTGTTCTCCTCTTCTCTTTGCAATTTAATGGAA Right flanking sequence: Indices 7265904 -- 7266403 TCTTGAAATCAAAATCCCAGGAGACCATCATGTTCTTCTCTTTCTACTTTCTTCAAGATGTGCTA ACCTTATTATTCTCATTATCCTAAAATAGACAGAAAAGAGTGAGAGAATAAGAGATAAAAAACAG TCAGACATTCTATTCCATCCTCCTCCCCCATAGATCATCCTCAATCCAAGATTACAAGGCAAATA TATTTCGTTTTGATCATTTTTCATATTTGTTGAGCTTCATCTTTGTTGATCTTCAGCTTCAAAGT TCTTAATTTGTTCCCTCCACTGTTTCATGTCTTTCGGGCCATCAGACTCCGGAAATTCGGTTTCA AAGAAAACGAAAAATCGGCGCAGACATATTTCTATTATTCGCGCGATATTCTTTGTATTCAAAGT TAAAAAGGTTCGAGTTTTTGAATTTTCAAAAAAGCTTAAAAGTCACAAAGGTCGAGCACAGTGCA CTATCATTAGTTTCGCATATATAGAAAATACATCATTTTTGTATT Found at i:7267276 original size:7 final size:7 Alignment explanation
Indices: 7267264--7267277 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 7267254 AAGAATGTAG 7267264 ATAATCT 1 ATAATCT 7267271 ATAATCT 1 ATAATCT 7267278 TGATTTTGAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43 Consensus pattern (7 bp): ATAATCT Left flanking sequence: Indices 7266764 -- 7267263 GTTACAACTTATAAATATACTTAATGTTCCATAAGTCTTATGTTGGTATTTTATATTCTGAGATC CGAATTCTGTTCATTTCCAGACCATCAATCGGTGATGCAATAATGAAAAGAGCGGCAGCGTCGCG AGCGGAAATGAGAACAATGTTATCGAAAATGAATGAGAAACAAATCGAATGTCTGGGCAAACAAA TGTTCGAATTGATTACTGATGCTGTCGAAAATGCTGATAAGTCCGAGAAGGTAAGGGCTTTTTTT CGACGAGAAGATGAATATTACAAATGAATATTGGAAAGTTCAATAAAATTTTAAACATTGTCTTT TTAGCCATCAGTTGAACGTTTTCTATGAATTCTAATCTTCATTCACTTTGTATTTGATATTCTTC GGATTTCAAATCCATACCTAAAGCTATTTTACTGAAAATGACTTATTTGTCAAGTACGATGTGAA TTTAATTCCATGTAAAGAATATATTGACGTAAATCAAGAATGTAG Right flanking sequence: Indices 7267278 -- 7267777 TGATTTTGAATCAAATCCATTAAACTTTTATATCAAAATATACCAATGACATTTATATCTAAGTT TGGAAACTTTATTTGGAAAAGTTAGGGAAAATACTTTATCCACAAATCCACTTTTACAGTTCAAA ATACAATGAACGGTGACTGGTGCGATTTTATAGGTTTCCTTTCGTGGTATTTCTGAACTTTTGAT TATTTTTTGGTAATTAAAGCATGTCCACAACTCACGCTACTCCACCTCTAATGTCAAAATGTATC TTTTCTTCACCAAAAAGTATATATTCCAGGTTCTCACACACGCCCGACAACTCGGTGGAACATAT GCATCTTTATGTCCTTTGGGCTTCCGACCTGATCTCTTCGCCCCTCTTGCTGATGCAGCAATTGC AGAATGTGTCAAACTTGATGGAGTTCATAAAAGATGTGAAACATTGTCTGCATGGAGCCAACTAT TCTCTGCTTTGTTCACTGGTGTACGAGATGGTTATTATCAAAGAG Found at i:7268363 original size:9 final size:9 Alignment explanation
Indices: 7268349--7268369 Score: 42 Period size: 9 Copynumber: 2.3 Consensus size: 9 7268339 TTTTCAATCA 7268349 TTTATTATT 1 TTTATTATT 7268358 TTTATTATT 1 TTTATTATT 7268367 TTT 1 TTT 7268370 TCTCTATTTT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81 Consensus pattern (9 bp): TTTATTATT Left flanking sequence: Indices 7267849 -- 7268348 TTGATAACTCTTGATTTCGGGAAAAGGTGAAAAAAAATCAATTCAAAGTTGCGCGTGGAATGTGA TGCAGCAATTGTTGAGAGAAGTTTGCAAAAACCGTACAAATGCGGCACATTCTACGCGCAAATTT TATATTTTTACAAAACCTTTTTAATGGAAAACAAGAATAATTGAAACTGAAGTATATACCTAATA GGAAGTAACATGCCGGCATTATTTTTGATAAATTCTTAAAATTTCATAAATTTTCAGCTTTCCGT CGACTTTTCGAAAACATCCGACACGAGCTTCGTCCGATAAATACCTGAAGCCTTCAATAATTGTT TCCAACTATTTTTCTCTTCATAAGATAATCTCATCAATTTTTGCTGTAAATAGTTTTTTCTTCAC TGAAAAAAGAAAAGCACATTTCCATTTCAATTTCTCATCTTCTTCCTTTCATCCAGGGTTTGTGT ATGTTGATCTCAAATCATCAATATATTCATGTTATTTTTCAATCA Right flanking sequence: Indices 7268370 -- 7268869 TCTCTATTTTTTTTTGAATAAATCTTTCAAACATGAAAAGAAAATAAATATAAGAAAAGTGAAAT GCTAAAAAAAGAGTTGTAAGGGGAGCGTTGTACCCGACATAGGAGCAACAGACAACATGAGTTAG AAGAGATTACAAGCTCGACACTTGCCACGTGGACTAAGGGGGTGTGTAAAGCAGATTAAACAATA AAGAATCCTACTGTACAAAACAAAATCATATACAATTTCTAGGCATTTAGGATGTTCTAAACCCC ATCAGCAACAAGACTTTGACCGTATCGAAGTGGGTCACCCGCTTTGATGGCAAATTTAATAGTGG GTGGAGCTTGGAAAACGAGGACGATCGTCGATCCGAGACGGAACTCTCCAACACGTTCACCCGAA ACATATGGTGCATGGATTTCTGTTTCAGTGTTCATTATTTTCTGAGTTTTCCTGCGAACAATGTT CGTTCGGAGTGAAGGTTCGGCGTCGACGACAATGTCTCCGACGTT Found at i:7270156 original size:9 final size:9 Alignment explanation
Indices: 7270142--7270161 Score: 40 Period size: 9 Copynumber: 2.2 Consensus size: 9 7270132 AATCAACGTA 7270142 GAAATTTTC 1 GAAATTTTC 7270151 GAAATTTTC 1 GAAATTTTC 7270160 GA 1 GA 7270162 GAAAAAAATT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.35, C:0.10, G:0.15, T:0.40 Consensus pattern (9 bp): GAAATTTTC Left flanking sequence: Indices 7269642 -- 7270141 AGACACGAATCTTGAAGAAAATGTATTAGAAATATATTGAGTTTCAATACTGGTAAGATTTTTAA ATTTTTTCCAAAGTTTATTTTAGTTACCCTAGAGGAACCCTCAAACACTTACAATTTTCTAACAT TCCTATATTACCCAGACGCGAAATTTTGCGCAAAAAATACCCGGTAAAAAATTGTGACGACAATT TTTTGTAATGCGTAAAGTACTGTAAGAACTAAAGTAAGTACTTTGAAGAGTACTGTAATAAACAT ACTTTTATCGTAAAAACATAACTAATCGATGAAAATCCCGGAGGAACGTAAGTTTGAAATTACAG TACTCCTCTATGTGTACACATTTTTGAACTTAACAAAAAATTGTTGTGTCACCGGTTACCGTATC CTTAAGCAAAATTTCGCATCTGGGTAAAACTTGTAGGATACTTTTTTTGTTTGTAATAAAAAATA GGCTTACAAAATAATAAAAAACAGTTTCAAACAAAAATCAACGTA Right flanking sequence: Indices 7270162 -- 7270661 GAAAAAAATTGTTTCTCACCTTCCAATTACTGTAATAATGCTTGCTATCCACAATTTCTCTCCAA TCCGGAGTGAATAGATACCCAACATATGAAGCTCCGCCGATAATCAATGTTGAGACAGACAACCA TTTCACCCAACTCCCTGAAAAAAATACATTTCAATCAAACTCCTTATCGAAATTGAATTTTTTCA TTTTAAATTTTAAGCTTATTGCTTTTATTGATGCTTTCCGATGATAAAATTCTGACCGACGTACC CAAAAAGTTGGTAAAATCAGCGAACATTGGACTCTCGTGAAACATTTTAAAATTTTAAATCAAGA TTATTGAAAGTGGAATTGAAATGACCGCATGAGTCATGTTTTTCATGTTTTGAACATATGCAAAA ATGACGAATTGGGAGTTTAAAAACAAAACGGAAACATTTAAAAAAAATGCATCTAACTATGAATT TGGATTTTTAATTTTTTTTTAAACACTTTCCCGGAGGAAAATGTT Found at