TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_IV Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 17493785 ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33 Found at i: i:5399926 original size:8 final size:8 Alignment explanation
Indices: 5399909--5399927 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 5399899 GGATGTTCGA * 5399909 TTTCCGGT 1 TTTCCAGT 5399917 TTTCCAGT 1 TTTCCAGT 5399925 TTT 1 TTT 5399928 TTGAGCCAAC Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.05, C:0.21, G:0.16, T:0.58 Consensus pattern (8 bp): TTTCCAGT Left flanking sequence: Indices 5399409 -- 5399908 AAACTCTAGAAAAAAAAGTTATTGGAATTTCTGATTTTCAGACTTTTAAAGAAAATATTTTAAAT CAATCATTCACGCTACTCCACCTCTAAAAACCGAATTCATAGTCTTATTCCAGTAATTCCAAAGT GACGTGTGTATTACCTCCAATTCAAAGATCATGCCATCAAATTGCGGTTTTTCAAGGATTTTCAA TGTTTCTCTCCTATAATTAACGTCCTTTTCATTCCATTTTTTGTCAAACTCATTTCCATATCCTT TTTTTTTAGACTCTTCTTCTTTCTTTTTCCACTTTAAACATATGTTTATGTATGTATATCCGTTT TTCTTCGCCGTTTCCTCCATTTTCTTCGGCTGCTGCTCCTTTTTTTTGGGCCGATAATTCAATTC AGTCCTGTCTTTCAATGGAAAAGAGGTCCTCAAGAAGAGCTATTTTTATTCCTTTTTCTCTATAA TAATCACAGAGAGTGTATCATTTGGAAAGCCGGATGGATGTTCGA Right flanking sequence: Indices 5399928 -- 5400427 TTGAGCCAACATTCTAGCTGTCCTACATTGATTTCTTTATTTTTTCTGAAAATTGACTTTGGGAC TTTTTTTCTCTTTCTTGGCGTGCCTACCTCTTGCCTATTTTCATTTTGAAATAAGACACTTGTGT AGGCAAACGTTTAGGCATCATAAAAATTGTAGGTAGGCTGGCAGGTTATTTGTGCCTACCTGAAG ACCTACTGTGTAGATGTTAGGTCTTCAACCTGAATAAAATAAGTAGTGTACTTCCTTCTTAAAAT ACGATTCGGGTTCCAGAACTTAAAATGATTTTTTAAATTTTCAGGTCTTCCCATAAGTTCACACA GTGGTTGCTAAGTTTGAGCAATTTGAAATAGTCACGTCTAAAACTGCTCAATAATAATCTTAACC ATACTAAACATGTACATTTATAAAAGATTCGATTTTGTTCTGTCAGACGTGTTCAAAAGTTTTGA AAAATATACAAAACTTATGGGAAGACCTGATAAAAAGCAATGAAA Found at i:5400654 original size:8 final size:8 Alignment explanation
Indices: 5400641--5400656 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 5400631 TTCTAAATTC 5400641 AATTTTAA 1 AATTTTAA 5400649 AATTTTAA 1 AATTTTAA 5400657 TTATGTTCTG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (8 bp): AATTTTAA Left flanking sequence: Indices 5400141 -- 5400640 AGGTCTTCAACCTGAATAAAATAAGTAGTGTACTTCCTTCTTAAAATACGATTCGGGTTCCAGAA CTTAAAATGATTTTTTAAATTTTCAGGTCTTCCCATAAGTTCACACAGTGGTTGCTAAGTTTGAG CAATTTGAAATAGTCACGTCTAAAACTGCTCAATAATAATCTTAACCATACTAAACATGTACATT TATAAAAGATTCGATTTTGTTCTGTCAGACGTGTTCAAAAGTTTTGAAAAATATACAAAACTTAT GGGAAGACCTGATAAAAAGCAATGAAAACGGGAAGTTTTATTTTAAAAGTTTTAATAAAAATAGA AAATCATTCAAAATCGACGAATTGTGCTGAATTTTTAATTCACGCGCAAATGATTTTATGTTCTA GTTATCTAAACAATATTGACAATTGTTGACCCATTTGATAATTATATTTTTCACCTTAATTATTT ATTCCAGAATTAAATTTTGTGTCAGAGTTTTTCAATTCTAAATTC Right flanking sequence: Indices 5400657 -- 5401156 TTATGTTCTGTTGTACTCAGTGAATACTAATAAATCGAAATGATAAAACAAATTATTACATTTAA AAGTTGCTTTCTAACTAACTCTAACTATAAGTCATCTAAAATAATTAACTTCATAAATTTATTGA AACAGTAGTTTCTTGCCAAAACGCATTTATTGCAGAAATTTACCAAAAGTCTCTCTCGTTTACTT TAATGTTTCCATCAACTTCTATAATTAATATTTTGATTCCAGATATGCCTACAGTATCCCAATCA GTGATAGGAAATAGTGCAGAAGAGCGAGAACTTCAAATATGCCGTCTTGGGTGGTCTCTTCTTCT TTTGTGGTTGGTTATGATAATTTACATGACAAAGGCACGTTTTTGTTGTTTGGCTGTTAACAATT GATATGATAATTCGTTCTTTTTTTTGTAGGAGATTTGGTTCGGTGAGACTTCGATCGGAATAGAA GAAGAACGTTTGATTCGGAAAAGAAAACGGTCAATTTATAGTTTT Found at i:5401965 original size:7 final size:7 Alignment explanation
Indices: 5401953--5401966 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 5401943 TCGACGATTC 5401953 AGAAATT 1 AGAAATT 5401960 AGAAATT 1 AGAAATT 5401967 TATTTTTTTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29 Consensus pattern (7 bp): AGAAATT Left flanking sequence: Indices 5401453 -- 5401952 TAAATCTAAGCAAATTTTGCTTTATTAGAAACATTTTCAAATAAGTATATAAAATCGAGTTGCCT CACTGGTGAAATATAACTATTTCACAGTGTTTTGCAAAATTGTTTCAACCATTACTCAAAGGAAA TTTATAAGTTGAAGAAAAAATAAATTATGCATTTTTTTGGTTACTAGATATTCATTTCATAATAT ACCAAGAAAAACACATACCTTTAAAACAAGTTTTTTGAAACAGTCAAAAAATATACTCAATTAAA ATAGTATGAAGAATCTAAAGTTTCACAGCTAGTTGTTTGCTTTCGTTTGGCTTTATTGCCCTTTG TATTTATAGATTATTCAGTTTTTAAATCTTTCTGAATTAATGAATAATAGTAATTAATTAACACT ACAATGAAGGTTTTTTGAAAACACTAAGAAAAAAATATAGCCGGAAATAGTTTAAAAATCCGTTT AGTTTTTGAGAAATTTCAGTTTTTCTTAAATTTTTTCGACGATTC Right flanking sequence: Indices 5401967 -- 5402466 TATTTTTTTAAATTCATATTTCTATAGTTCTGTAAAAGAGTAGAAGATAAATTTTGTTAGATTCT TAATTTTGAGGTTCAGACAATTCTAACAAAAACGCAGTGTTTTGAAAATGTTTGAAATTGAATTT TTCTGAAAATCAACAGTATTTAGCTACTTGTTAAATATTAAATCCAAATATCCACTGACCTTACT TCAACTATAAAATATGCTTTAAAATTTGGCACCAAGTTGAATAAAAAAAAAAGAAAACAATTTGC AAAATTTTTAAAAATTGATTATTTAAATGTTCTGCATATATAAAATTTTATAAAATTATGATTAG GTTCTTCACAAGTTTAACTAGACATCCACACAGTACACAGATATCATAAAAATTTAAGAATATTA AACGGAACACATTTGTTCTATTTATTAAAATAGGTTATTGATACAGTTAGAATTTTTGGATATGT GGCCTTAATACTTATTTTGACTCTTATGCTTCCAGATATTTTAAA Found at i:5404261 original size:8 final size:8 Alignment explanation
Indices: 5404248--5404263 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 5404238 TAATTTGTAT 5404248 CCAATCAC 1 CCAATCAC 5404256 CCAATCAC 1 CCAATCAC 5404264 TTCAGATTTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.50, G:0.00, T:0.12 Consensus pattern (8 bp): CCAATCAC Left flanking sequence: Indices 5403748 -- 5404247 AACGACAGAAATTAGTAGGGCGTTCCGTAATGCAACCATATATTCATTTTAAAAGAAATAACCTA AAAACAAGGTTCAGAATCTGATCACCCAATTGGCTGCACCATTTGAAGTGAGCATTGACATTGTT GAAAATGGATCTAGAAAACATCGAGGATTTGCTTTTGTACAATGCAGATCACTTGCCGAGGCAAA CGTTTTGTTGGCTAAATTTTCAGGGGTATGCTACTTTTTTCTTAGATTTTGATTTTTTTTAATGG AAAAGTCGTATAGGAATTCATTAAAAATTTCAGAGGATATTACAAGGGAGCCTTAATAAGGCACT GAAAAGGTTTGACAACAATGCTCTGATTGATTATTTGATAATCCTAGATTCAATCAAACCATTTC TGATTTTCAATTCCAATTAATGTATTTTTCTGAATTAATACTGTTTCATAAAGCGTATAAATAGT TTTTTCATAATTCAGTATTATTTTAGAATATACAGTAATTTGTAT Right flanking sequence: Indices 5404264 -- 5404763 TTCAGATTTTTTTCCTCTTCCATATTTTTCTTTTATATTTGAAACAGTAATATTTTCAGCTCTTC ACAAAAGTCAATTTCGCAAAGAAAGAGCCAAAACCAGCGGAGAATGTTATGAGCAATGTATGCTT TCACTCATTTGGAATAGTTATTTAATTTTCATACTTTCAGATATCAAATGTCTTCGTACGTGGAA TATCTCGTGACATGCCGGATACTGAACTCTATCAAGCTTTTGGAGGAATCACTGACGGAGTTGTT CAATGCCACGTGGCAGATGGATATGGTTTTGTGCTCTTTGACACAAGAGCCAATGCACAGAAAAA GATAGTCGAGATGGATGGGAAGACATTGGTTGGGAAATGGAGAAACAAAATTTAAAGATTTTTTT TGGATTTTCAGAATGGAAAGCTGATTTCTGTGAGCTGGGCAAGACCGGATACTGTTGGAAGGAAG AGAAAAAGACCGATGAGTGAGGAAAGGTGAATCTTGTTTCATGTT Found at i:5405410 original size:9 final size:9 Alignment explanation
Indices: 5405393--5405411 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 5405383 TATTCCAATT 5405393 ACCACCACA 1 ACCACCACA * 5405402 ACCAGCACA 1 ACCACCACA 5405411 A 1 A 5405412 ATACTTCAAC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.47, C:0.47, G:0.05, T:0.00 Consensus pattern (9 bp): ACCACCACA Left flanking sequence: Indices 5404893 -- 5405392 TAATTTTTTTTGTTTTTATTTTGTGATTTTTATCTGACGACTTTTTTTTCAATATTTTTACCACC GTTAAATATGTGATTATTATTTATGTATAAAATATGTGAAACTAGGATGCTGTCGAAAATTTGCA AATTTTTCTTTTGAAAATATTTTTTACTGAGAAACCGAAACAATGAAAGAAATAGATTGCAAATT ATATAACTAACAATTTGATGATTCTCTGAAAAAACGAAATTCTTCTGTTGCTATAAGTCATTTTA AATTATCGAAATAAGGAAAACCGGTTACACTCCGTTTTGAACGTAGAAAAGTGAAAGACAGTTTG AAAGATATTCGATACATGTGTAGTTGGTCTAAATTTATGGCTTGAAAACTATGTCAGTTTCAATT ACCAGAAACAATAATACAAACTCCATTTTCCAGCCCAACACCATCCAGCACTGATCTTGGACTTC TTCTCTTCTCAAACGTCCAGTAATTCCATCTCATTTATTCCAATT Right flanking sequence: Indices 5405412 -- 5405911 ATACTTCAACCATCACTTATTCCATTCCTTAACCCATCATTCCCATTATTATTCCCTCAGAATCC ACTTCTAGCTCAACCTGATTTAACGCAATATTTGAATTTTTTGATGTAAAATAAAATAAAATTGT GGAGGAATACATATTATTTACGTAGCACAGCCTCAAGTTCAAAATGAAAAAAAACAAACGGCGGG AAATTAGAAAAAAAGAATCGAAAATCAATTATTCCTATTATTTTTTGATAACATAACGGCTGCAT ATCAACAAGCGAAATGACTGAAATTCATAACGCCGAGGTGAGTTCATTTTCAGATTTTCCGAGAT TTTCCGTTCATTTTCAGTTAACTCAAGAAATAGTCATTGGATCGGTTGCGGCATGGCTTGAACAG ATAAATGACTCAGCTTTAAACATTGATGTTTCATTTCATCGGGACATTAATTACAATTCCAATCA AGATTTGTTAGTTTTTACTTGGATTTTTTAAAATTATAGCTGAAA Found at i:5405738 original size:10 final size:10 Alignment explanation
Indices: 5405723--5405742 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 5405713 GTTCATTTTC 5405723 AGATTTTCCG 1 AGATTTTCCG 5405733 AGATTTTCCG 1 AGATTTTCCG 5405743 TTCATTTTCA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40 Consensus pattern (10 bp): AGATTTTCCG Left flanking sequence: Indices 5405223 -- 5405722 TATTCGATACATGTGTAGTTGGTCTAAATTTATGGCTTGAAAACTATGTCAGTTTCAATTACCAG AAACAATAATACAAACTCCATTTTCCAGCCCAACACCATCCAGCACTGATCTTGGACTTCTTCTC TTCTCAAACGTCCAGTAATTCCATCTCATTTATTCCAATTACCACCACAACCAGCACAAATACTT CAACCATCACTTATTCCATTCCTTAACCCATCATTCCCATTATTATTCCCTCAGAATCCACTTCT AGCTCAACCTGATTTAACGCAATATTTGAATTTTTTGATGTAAAATAAAATAAAATTGTGGAGGA ATACATATTATTTACGTAGCACAGCCTCAAGTTCAAAATGAAAAAAAACAAACGGCGGGAAATTA GAAAAAAAGAATCGAAAATCAATTATTCCTATTATTTTTTGATAACATAACGGCTGCATATCAAC AAGCGAAATGACTGAAATTCATAACGCCGAGGTGAGTTCATTTTC Right flanking sequence: Indices 5405743 -- 5406242 TTCATTTTCAGTTAACTCAAGAAATAGTCATTGGATCGGTTGCGGCATGGCTTGAACAGATAAAT GACTCAGCTTTAAACATTGATGTTTCATTTCATCGGGACATTAATTACAATTCCAATCAAGATTT GTTAGTTTTTACTTGGATTTTTTAAAATTATAGCTGAAATTGAAGCCTGTTGAAGTTCATAAACT TTACTTTTGTAATGAGCCAGTAAGAGAAACCACTTTATTCGAACTAGATTGAGGAAGTTTGAATA TTTCCACAATTCAATCATTACTAAAGTTCATTTTGTGTAGCTGTTATAATTTTCATGTGAAACCG TAACTTTTACATTTCAGAACCGCCACCACAAAAATCGATATTCTGAAGGCAGATGACTTCCGACC AATGAAACGTGGACAACATGCGTGGAAAGAAAACGATCAAAAAATGATTCACAGGATGCAGAAAG AGAAGAAGGCAGTTAGTGTGGAACAAGGAATTGTCGGTGCTGTAA Found at i:5406251 original size:7 final size:7 Alignment explanation
Indices: 5406239--5406253 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 5406229 TGTCGGTGCT 5406239 GTAAGAG 1 GTAAGAG 5406246 GTAAGAG 1 GTAAGAG 5406253 G 1 G 5406254 GGAAGTTTTG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.40, C:0.00, G:0.47, T:0.13 Consensus pattern (7 bp): GTAAGAG Left flanking sequence: Indices 5405739 -- 5406238 TCCGTTCATTTTCAGTTAACTCAAGAAATAGTCATTGGATCGGTTGCGGCATGGCTTGAACAGAT AAATGACTCAGCTTTAAACATTGATGTTTCATTTCATCGGGACATTAATTACAATTCCAATCAAG ATTTGTTAGTTTTTACTTGGATTTTTTAAAATTATAGCTGAAATTGAAGCCTGTTGAAGTTCATA AACTTTACTTTTGTAATGAGCCAGTAAGAGAAACCACTTTATTCGAACTAGATTGAGGAAGTTTG AATATTTCCACAATTCAATCATTACTAAAGTTCATTTTGTGTAGCTGTTATAATTTTCATGTGAA ACCGTAACTTTTACATTTCAGAACCGCCACCACAAAAATCGATATTCTGAAGGCAGATGACTTCC GACCAATGAAACGTGGACAACATGCGTGGAAAGAAAACGATCAAAAAATGATTCACAGGATGCAG AAAGAGAAGAAGGCAGTTAGTGTGGAACAAGGAATTGTCGGTGCT Right flanking sequence: Indices 5406254 -- 5406753 GGAAGTTTTGAAGGTAGTGAAGATTAAATCGATTGAAACGTTTGAACTGTAGACATGAAACAGTA ACCGATTAACTTCAGAATCATTGGAAAGCTGGAGAACGTCTTCTTCATCAGAACGTCCAAGTGCC GAGGAAGGTTCAATGACCAAAAAAGTTTCGAATGAGGTGGTGAAGAGAGTTGCAGTCAAAAGAGT GAGTTGTTGTACATACATACTATTGCATTGAAACAGTTTTGCTTCTTCAAGATTAATCTAATAAA ACCTCATGAAACAGAAAATCAAATTGTTTTCAGGAGCTTCCATCTGCTGAATACCATTCAGTTCG TTACGATGAACGGAATTTGAGTCTTCGAAAAGCACAAGTTGAGCTGAAAACTGCACAAGAAGCTC CAGCTGTTCGAGAGAAAGGAGATGCAAATGATCGAACGGATAAAGACTGTGTCACTCATCCACAC GATCTTCAGTCTACGGAAGAACCAACGACCTCTGATTCAAATTCA Found at i:5407015 original size:9 final size:9 Alignment explanation
Indices: 5406997--5407018 Score: 37 Period size: 9 Copynumber: 2.6 Consensus size: 9 5406987 ATCACCATTG 5406997 GAAG-TGAA 1 GAAGATGAA 5407005 GAAGATGAA 1 GAAGATGAA 5407014 GAAGA 1 GAAGA 5407019 GAATTCAGGT Statistics Matches: 13, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 8 4 0.31 9 9 0.69 ACGTcount: A:0.55, C:0.00, G:0.36, T:0.09 Consensus pattern (9 bp): GAAGATGAA Left flanking sequence: Indices 5406497 -- 5406996 AAGATTAATCTAATAAAACCTCATGAAACAGAAAATCAAATTGTTTTCAGGAGCTTCCATCTGCT GAATACCATTCAGTTCGTTACGATGAACGGAATTTGAGTCTTCGAAAAGCACAAGTTGAGCTGAA AACTGCACAAGAAGCTCCAGCTGTTCGAGAGAAAGGAGATGCAAATGATCGAACGGATAAAGACT GTGTCACTCATCCACACGATCTTCAGTCTACGGAAGAACCAACGACCTCTGATTCAAATTCACAA GTGTCGGAAGATATTCCTCCACCAAAAAATAAGGAATCAGGAACACCCCCACTTAAAGAAAAAAC TCCTGAACCAATTCCAGAAGAACCGAAGAAAGTTGAGGAAGAAGTGAAGAAGCCAGAAGTACCAA AGAATGAAGAGCCGAAAATGGAGGAACCAGTGAAAGAAGAAGCACCAAAAGTAGAGGAAAAGAAG GAAGAGGTGAAAATGGTTGAGGACCCAAAAGTAGAATCACCATTG Right flanking sequence: Indices 5407019 -- 5407518 GAATTCAGGTAAAAAAGCACATTTTTTAAAGTTTTTACTGTTTCAATTATTCGTTATGAGTGTTT GAAATAAAATACAATTTTAGTAGATCTACATATCATATACGTAGGATGGTGAATTTTAAAAGTTT CATAGTTTCATAAATCATTACCAACCAATCTTACAGCAAAATTTCAGATAAATGTGAAACGTTAT CCGGATAGTGGAGAACTGACAATTCTCACCGAAAAGGATGGAATGGTTAGCTTCACGTGTTCAAC AAAGCATCGAATCAAGAAGAAATCGAAGAAGGATGAAGAATGATACTAGTTGATTTGATAACTGT GGAAATAAAGTTTTTGGGGCTGTAAACTTACTGATAACCAAATAGTTTTGGTGTTCAGCTAAGCT GTTTTTGTTTCAAACTTTTTTCTGAAAATGTAATTGAAAAATACTCGAGTCTATCTTTAAAAAAG TATAATGCTGTTCTATGCATATAGGTTCACATTTCAGCGAATGAA Found at i:5407157 original size:8 final size:8 Alignment explanation
Indices: 5407144--5407160 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 5407134 GAATTTTAAA 5407144 AGTTTCAT 1 AGTTTCAT 5407152 AGTTTCAT 1 AGTTTCAT 5407160 A 1 A 5407161 AATCATTACC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47 Consensus pattern (8 bp): AGTTTCAT Left flanking sequence: Indices 5406644 -- 5407143 CAGCTGTTCGAGAGAAAGGAGATGCAAATGATCGAACGGATAAAGACTGTGTCACTCATCCACAC GATCTTCAGTCTACGGAAGAACCAACGACCTCTGATTCAAATTCACAAGTGTCGGAAGATATTCC TCCACCAAAAAATAAGGAATCAGGAACACCCCCACTTAAAGAAAAAACTCCTGAACCAATTCCAG AAGAACCGAAGAAAGTTGAGGAAGAAGTGAAGAAGCCAGAAGTACCAAAGAATGAAGAGCCGAAA ATGGAGGAACCAGTGAAAGAAGAAGCACCAAAAGTAGAGGAAAAGAAGGAAGAGGTGAAAATGGT TGAGGACCCAAAAGTAGAATCACCATTGGAAGTGAAGAAGATGAAGAAGAGAATTCAGGTAAAAA AGCACATTTTTTAAAGTTTTTACTGTTTCAATTATTCGTTATGAGTGTTTGAAATAAAATACAAT TTTAGTAGATCTACATATCATATACGTAGGATGGTGAATTTTAAA Right flanking sequence: Indices 5407161 -- 5407660 AATCATTACCAACCAATCTTACAGCAAAATTTCAGATAAATGTGAAACGTTATCCGGATAGTGGA GAACTGACAATTCTCACCGAAAAGGATGGAATGGTTAGCTTCACGTGTTCAACAAAGCATCGAAT CAAGAAGAAATCGAAGAAGGATGAAGAATGATACTAGTTGATTTGATAACTGTGGAAATAAAGTT TTTGGGGCTGTAAACTTACTGATAACCAAATAGTTTTGGTGTTCAGCTAAGCTGTTTTTGTTTCA AACTTTTTTCTGAAAATGTAATTGAAAAATACTCGAGTCTATCTTTAAAAAAGTATAATGCTGTT CTATGCATATAGGTTCACATTTCAGCGAATGAACAATCATAATTTCGACCGAAAAATTACTGTTT CAAAGAGCACACTTGTAGAATCTTACTTTTTAATAACTACTGGAAATCACAAGGAAAGTATTTCA GCTCACAAATCGACTTCCGAATGTCATTCGACAGTAGACCTTTAG Found at i:5407318 original size:10 final size:10 Alignment explanation
Indices: 5407303--5407322 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 5407293 AGAAGAAATC 5407303 GAAGAAGGAT 1 GAAGAAGGAT * 5407313 GAAGAATGAT 1 GAAGAAGGAT 5407323 ACTAGTTGAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.50, C:0.00, G:0.35, T:0.15 Consensus pattern (10 bp): GAAGAAGGAT Left flanking sequence: Indices 5406803 -- 5407302 CCCCACTTAAAGAAAAAACTCCTGAACCAATTCCAGAAGAACCGAAGAAAGTTGAGGAAGAAGTG AAGAAGCCAGAAGTACCAAAGAATGAAGAGCCGAAAATGGAGGAACCAGTGAAAGAAGAAGCACC AAAAGTAGAGGAAAAGAAGGAAGAGGTGAAAATGGTTGAGGACCCAAAAGTAGAATCACCATTGG AAGTGAAGAAGATGAAGAAGAGAATTCAGGTAAAAAAGCACATTTTTTAAAGTTTTTACTGTTTC AATTATTCGTTATGAGTGTTTGAAATAAAATACAATTTTAGTAGATCTACATATCATATACGTAG GATGGTGAATTTTAAAAGTTTCATAGTTTCATAAATCATTACCAACCAATCTTACAGCAAAATTT CAGATAAATGTGAAACGTTATCCGGATAGTGGAGAACTGACAATTCTCACCGAAAAGGATGGAAT GGTTAGCTTCACGTGTTCAACAAAGCATCGAATCAAGAAGAAATC Right flanking sequence: Indices 5407323 -- 5407822 ACTAGTTGATTTGATAACTGTGGAAATAAAGTTTTTGGGGCTGTAAACTTACTGATAACCAAATA GTTTTGGTGTTCAGCTAAGCTGTTTTTGTTTCAAACTTTTTTCTGAAAATGTAATTGAAAAATAC TCGAGTCTATCTTTAAAAAAGTATAATGCTGTTCTATGCATATAGGTTCACATTTCAGCGAATGA ACAATCATAATTTCGACCGAAAAATTACTGTTTCAAAGAGCACACTTGTAGAATCTTACTTTTTA ATAACTACTGGAAATCACAAGGAAAGTATTTCAGCTCACAAATCGACTTCCGAATGTCATTCGAC AGTAGACCTTTAGACTAGTTCACTACTTGTGAGATCCAAGTTCAAACATTTTTTTGTACATTTTG AATAAGTTAAAGGTTATATTGGGACATTCAGCCACAAAATGAAACTCCTAAACTATGCTAAACTT GTCCCCTTACTGGAAATGAAAGCCCCAAACGTGAATCTGAGTAAT Found at i:5410622 original size:10 final size:10 Alignment explanation
Indices: 5410603--5410622 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 5410593 GCGCAGCTTT * 5410603 CTGACTCAAA 1 CTGACGCAAA 5410613 CTGACGCAAA 1 CTGACGCAAA 5410623 ATTCCGCAAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.40, C:0.30, G:0.15, T:0.15 Consensus pattern (10 bp): CTGACGCAAA Left flanking sequence: Indices 5410103 -- 5410602 TACCGGTTTCCCTCGTCTAGTATTTTTGCTGAAATTTTCTGTTGACTTGAAGATATTAAAAAAAA AAAATTAAAATGTCCTTACTGTGAGCTTTCAGTGTCCGAATCGCTCTTCTTTACCTCGCGTCGCT TCTGATTTGGTGAGAATTTGGTTTTTGATTTTGAATTTTTTGAACCATTGCTTGCTTCTGGTTTT TTTGTTACTTCTTGCTTCGCTTTCTGTAAAAAAGTTAGTTAGTTTTGAACATATTTTTGGCGAAC ACTGTCAATTTTCTGTCGCACTCTTTCAACTCTCTATCGCACAATGATACTGACGCAAATTTTGA GCAACGCCACGGCTTTCTGTTACACAACAGCGCAACTTTCTGTCGCCGATTGGCAGCTTTCTGCC TAAAACGACCAAATTCTGTTGACACGTCAGCTAGTCGAGAGGTGTCGGAAACCCACTCTCAACTT TCTGTCGCACGTGGCCAGTTTATTTGCACACAGCGGCGCAGCTTT Right flanking sequence: Indices 5410623 -- 5411122 ATTCCGCAATATACTTGATGAACTCACTCTATTGAACATATTCATAATGTGAATATTCTGATTCC GTGAAGTTTTGAACTCCAAAGATGGATGTCGTGATAGAAAAAGTAATGAATTGGTTCGAAAATAC TTTTATGCGAAAAAATATAATTAGTTGGCAACGTGGTTTTGATTTTGTTTTTTGAAAAAATAAGC TCACGGGATAAATAAAGTTTATTTCTAGTTTTTTTAAAATTTAACTTACGGCGCGCGGCGTCGGC TTGAGGCAGGCGTGAGGCCCGCATTTCGCAGCTGGGACACCTACTTTGAGGTACAAGCTGACACA AAAAATCTGCCTACGAGGCGGGCGTAGGTGAGCAGGCAGCCAGGTCGCCTGCTTTCCGTCGCATC TTTTCAATTTTTGTCGCTCAACAGGCACACTTCTGGCGGACTATACAAATTTTCTGTAGAACTTT GTATATCATACTGCCAAGTTTCTGACGCAAAAATCCGCAGTATAT Found at i:5411669 original size:7 final size:7 Alignment explanation
Indices: 5411657--5411674 Score: 36 Period size: 7 Copynumber: 2.6 Consensus size: 7 5411647 TTGAGTGAAG 5411657 ACTACAA 1 ACTACAA 5411664 ACTACAA 1 ACTACAA 5411671 ACTA 1 ACTA 5411675 TAGACCTTCC Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.56, C:0.28, G:0.00, T:0.17 Consensus pattern (7 bp): ACTACAA Left flanking sequence: Indices 5411157 -- 5411656 GTGAATCCGTTTATTCCGGAAATTCCACCGAAACTGCAAGAACGAATGATAGAAAAAGTAATAAA CTTTTTTATTTCAAAGTTTTTTTTTTGAAAATTTGAATAAAGTTGACAACGTGGTTTTCATTTTA AAAATGGTCACGCAATACATTTTTTGTTGAAATTTCATTCATAAAACTTGAGTAAATAATATATC CTGTTATATGTCATGGTCCCCAGTATAATATTCGAAAAATCAGAAATTAAACAGAAAAATCGATA ACTCATAAAATTTTATTTATTTTTTAATGGAGTTCAATATTCTCTTCCTTCAAGCAAATGGGTCT CGAAGCGCCGCCGGCATCACCTGAGCCCCATCATCTTTGCACACCAACGCTGAAACGGTTTCCGT CGATTGTTGCTCGTCGCGCTGGAAATTGTAGACACGGCGGTTCTCGTGGTGGAAGATATTGATGG TATGGAACTTCCATGGAGTACCCAGTGCTGAAAATTTGAGTGAAG Right flanking sequence: Indices 5411675 -- 5412174 TAGACCTTCCTTGGCGCCGTCGTAATGAATCTCACAACATGTCAGTGGGCCGAGCGATGGTTGAT TGGCCATCACGAAGAGATCGGACTGAAAATAATCGATAATATAATCAAAAATCGATAATTTTAGC GGAAAGTCGATAAGTTAGTGAAAAGTCGATAGTCCGCCGGAATTTCCCAAAAAAATCGATATTCA ATAATTTGGCAAAAATCAATTCTCCTGCGGGAAAACTCACATGTCCTCTCTGAAATGGAGTTGGA TGTGTATGAGAATACCGTAATGCCTGCTTATCAGTCGCACGACCCTCATCATCTCGAATCAAAAT CGATATCTTTTCGCTGGGACCGTCTGGCGTTGAATCGGAAGAAGTTCGAATGAGGATCGTAAACG CCGCCGGACAATCGTCGTCATCGTATTTCGATCGAACCGATGATCCCATCTCTTTAATCGATTCC GCCGCCATTATCGATTAATTTGATTATCGATTTTTTGTCGATTTT Found at i:5413081 original size:7 final size:7 Alignment explanation
Indices: 5413071--5413087 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 5413061 CAAAAAAAAA 5413071 AAATCAC 1 AAATCAC * 5413078 AAATGAC 1 AAATCAC 5413085 AAA 1 AAA 5413088 CTTTTGAAGT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.65, C:0.18, G:0.06, T:0.12 Consensus pattern (7 bp): AAATCAC Left flanking sequence: Indices 5412571 -- 5413070 TGAAATTGCTTTCAGACAATTTTTTTCACAAATCAATGGTTCATAAAATGACTCAGAAGAGTTTT TTCAGGTCTAATCTTAATTTTAAAAATGTTGAAAAATGTTCTGACCGAAAATTTCAAATTTTTTC CGAAACTTTTCTTTTTTGAAAACATCGGATGGAGCAAAATATTTTGTAGTGACCTACTTAGAAGG TGTTCTTTCAAATAAAACAAGTCTCATTTCAAAGCCCAGGAATAAGTTGAAATTAAAAATACTTT AATTGCGTTTCAAACAAAATTACAATGCACAATTGAAAATATTCCACTCAACATCGGTTCAATTC TGCACACCACAACGCATCGACCACTTGCTGATCCACAAATTTCGCGAGTTCTGCGATTTTCTTAT CAGCCATCTGATAACATTGATCAGATGTTGTTCCTTTGGCAAGAGAAGCACAAGCTGTATTGGCA AATGAGGTTATGTCAGTCTAAAGAAATTATGAACTCAAAAAAAAA Right flanking sequence: Indices 5413088 -- 5413587 CTTTTGAAGTGACCGCATAATTCTTGGCATTTTCCAGCATTCTCTCACAAAACGCACATGTTAGA CGTTTCTCGTCCTGAAAATGAGAATAATAAAATTGAATCTTTCATGTAGACTCAAAAACGTTTGC CTGCCTGCATGCTAGGCGACCTACTCCTGCCTCGTGCCTACACTGCCTCCTACAGTCATGGAACA CTCTGTCAAAGGTACATAAGCAGGCATCTGCAGGGAAACCTGAAATAAAAAAATGTGACACTTAC AATTTCTTCTTTTTCGGGAACTTTTTCTCTTGAAGATTCGACAATTGTATTCCGAGACATGTATT TTGAACGAAGCGGTGGTGGAATAATTATCTGAAACGAAATTTTTTAATACATTAGTATCTTTTCC AGGTTTATGTTTTTAATATATCTATTTCATTGCTGAACTAAAAAAAATCTGAGGACTGAGGAATG GTAAGAAATTCCAATTATTTATAATTTTTGAATATATTGTTAACC Found at i:5413538 original size:7 final size:7 Alignment explanation
Indices: 5413526--5413539 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 5413516 TAAAAAAAAT 5413526 CTGAGGA 1 CTGAGGA 5413533 CTGAGGA 1 CTGAGGA 5413540 ATGGTAAGAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.14, G:0.43, T:0.14 Consensus pattern (7 bp): CTGAGGA Left flanking sequence: Indices 5413026 -- 5413525 AATGAGGTTATGTCAGTCTAAAGAAATTATGAACTCAAAAAAAAAAAATCACAAATGACAAACTT TTGAAGTGACCGCATAATTCTTGGCATTTTCCAGCATTCTCTCACAAAACGCACATGTTAGACGT TTCTCGTCCTGAAAATGAGAATAATAAAATTGAATCTTTCATGTAGACTCAAAAACGTTTGCCTG CCTGCATGCTAGGCGACCTACTCCTGCCTCGTGCCTACACTGCCTCCTACAGTCATGGAACACTC TGTCAAAGGTACATAAGCAGGCATCTGCAGGGAAACCTGAAATAAAAAAATGTGACACTTACAAT TTCTTCTTTTTCGGGAACTTTTTCTCTTGAAGATTCGACAATTGTATTCCGAGACATGTATTTTG AACGAAGCGGTGGTGGAATAATTATCTGAAACGAAATTTTTTAATACATTAGTATCTTTTCCAGG TTTATGTTTTTAATATATCTATTTCATTGCTGAACTAAAAAAAAT Right flanking sequence: Indices 5413540 -- 5414039 ATGGTAAGAAATTCCAATTATTTATAATTTTTGAATATATTGTTAACCCGAAACAGTATAATTTG AAAATGTGTTGTTATTTATTTTTTATCATTTGAAAACACTTTGTTAAATTAAAAATAAAGCCGCA CTGCTTAATTTTTTCCCTTATATATAAAAAAGTTCGTACTAACAGAATTATTCCTGATTGTTTTT GTCGCAAAAGTGGGAACTGACTGTGAGCCAAAAATGTTTCGAGATCTAAAAAATACAATTTCGAA AATGAGAAAAATATGCACTTTTGATCGTTTCTGCTTTTTTAAATAGTTTTTTAAATTTTTAACAT TACGCTTTCTTCATTTCCCCACTTTGCAACTTACCTTTGATAGTCTTAAAATAATTTCGGTTTTC CTGTCGGTCATTCGTTTTTTTGTTATTTCCTCATTATTTTCAAAACGGGTTACACAACTCTTTCG AGTTATTAAATTTGCTTTTTCAAAAAGAACGTCAATGTCAAAGTA Found at i:5414809 original size:7 final size:7 Alignment explanation
Indices: 5414797--5414811 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 5414787 TTTTTGGTTT 5414797 ATTCAAA 1 ATTCAAA 5414804 ATTCAAA 1 ATTCAAA 5414811 A 1 A 5414812 ATGTGAATTA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.60, C:0.13, G:0.00, T:0.27 Consensus pattern (7 bp): ATTCAAA Left flanking sequence: Indices 5414297 -- 5414796 AGCTTCTTCTTCTGGGTACAGAGTTGTAGCTTCGATTGATGGAAGTGGACCGCCGATCTTTAAAA TTTTAGTTTTTTTTATTGTTTAGAAAAGTGGAACAATGTTCAATTCAGTTTTTTGAAATACTTAA GTGGGAGTTTTGAAACTGTTACATTTATTTTTTAGTGTTTCAAAATGTAGATATTTTTAACGAAA CCTAATTTATATTTGCTATTCATTTGAAACAAAAGCACTAAATTGTACGTTCCCACTATTTTCAA CGCTTCGTTTTCTAGAAGTTTACTGAAAATTTATCTTTTTCACCAGTCCCAATGAAAATTAGAAC TATCATAACCTATCCAACTTACCGCAAATGGATTTCTCTCATCACAAAAATTCATTCGAACACAC ACATCTTTCGAAGAAATATCATAATTAATTGAATAATAGATCTCTGGAAGTGAGGTCTCCACAAA CGCGAAACATTGTTCCTGTAAATTTTCCTAACATCTTTTTGGTTT Right flanking sequence: Indices 5414812 -- 5415311 ATGTGAATTATTCGGTCACCTTGAATACAGAAGGAAGTACTCGACATTTCTCATATAATTGATTT CTCAATTGATTCTCCGATAGACCAACTCGATGTTTTGTAACTGACAATAATTGAGTGCACATGAA ACATCCCAAGTTAGACGGAGTATTTCCATTTGGAGAAGGAGATGCTCTGTAAATTTGAAATTGTT TCTATGATAAAATCTACTCAACAAATTTTTTTCTGTTTCTTAAATAATATATGTTATTTATCAGT TATCTAAATAATTGATACATATTTGAAAATTCTTTGTTCGACAAGACTAAAAGCATTAAGTAGTT TTAATATTTGAAATCTTTGAATTATTTGAAATTATTTGAAATCATCTCAAAAAAAGAGAGAAAAA ATTAATAAAAATGCACAGTATCAAGAATTTTATATATCTAGTTATTCACTATGTGATATATCACA TGCTTTAACTTTCTTTCGTTATTATGTGTCAGCAGTCAGGTGCTC Found at i:5416185 original size:9 final size:9 Alignment explanation
Indices: 5416171--5416190 Score: 40 Period size: 9 Copynumber: 2.2 Consensus size: 9 5416161 GGATATTAGC 5416171 TTGAGAATT 1 TTGAGAATT 5416180 TTGAGAATT 1 TTGAGAATT 5416189 TT 1 TT 5416191 TTTGTTGATA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50 Consensus pattern (9 bp): TTGAGAATT Left flanking sequence: Indices 5415671 -- 5416170 CTTCGTTCCAAAAATATGTAAAAGTGACTTGAAATTGCTGACCTAACACGGCAAAAACGAAAAAT AAATTAATTCTCATTTTAAGAAGAGAGTTTGAGATCCGGTGAAAACGGAACTTATTATTATTATT GAAATTCAATGAGTGAAACAGAAACAATTGAAAATAGGAGGAGCTACCCGGGAGCCCAAAATAAA GACAAGAAGAAGAAGACGTCTATGTTCTCTATATTTCGCACCTCAAGCACTGTATTTGGTAAGAG AAGCGCCGAAAGAGCGTGCGAGATGAAGAGACGCAGACACTCGAGATGTGCGAATTTGAGCACCC GAGTTGAGAGCATCGTTTGCACACTTGTGATCCTTCCTCTCGATTGCCTTATTTCGCCACTACCT CCTACTGTATGTGTACTATTATAATTGAACGAAAATGATGAACAAAGGGTTTGGAGACAATCGAA TCGTGCTTAAGATCACTTTTTTCATGTCTCAGATGGGATATTAGC Right flanking sequence: Indices 5416191 -- 5416690 TTTGTTGATATTTTTATAAAAGAGGCAAAATTGTGAATAATATTTCAAGAGCAAAACTCTATAAA TACATCAAACTTTAGAAAACTGTAAAATACTTTTTTCTTAATTTGTTTTATTATTAATGTTGGAG ATGTAATAAAGTTTTCAATAAATCTCGGAAATTCAAAGTGTTATCACTCCTAGAGATGACTTTTT TAATTGGACACTTTGTGAAAATTATCTTCAGAGGAGCATTTTATACTAGAAAAATTGATCTCGCC GTTTTTTTTTAATTAGGCTTTTAAAATGCGAAAATCTTCATTGTCCTAAAATCAGGAGTAATGTT TTAAAATCTGTTGGTAGAAATTTGAAATTTCTTAATCTAAAACTCTTGGCATTTCCTCCTTAAAA CTGCTCTCCTGAAGATAAAAATAATCAGCATAACTTTTGCAAAATTCGCATATCAATAATTTTTA GTAAATCTTTTGAAGTTTTCAGAAATAAAATCAACTACCATAATT Found at i:5416544 original size:7 final size:7 Alignment explanation
Indices: 5416532--5416545 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 5416522 TCTGTTGGTA 5416532 GAAATTT 1 GAAATTT 5416539 GAAATTT 1 GAAATTT 5416546 CTTAATCTAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43 Consensus pattern (7 bp): GAAATTT Left flanking sequence: Indices 5416032 -- 5416531 CTCTCGATTGCCTTATTTCGCCACTACCTCCTACTGTATGTGTACTATTATAATTGAACGAAAAT GATGAACAAAGGGTTTGGAGACAATCGAATCGTGCTTAAGATCACTTTTTTCATGTCTCAGATGG GATATTAGCTTGAGAATTTTGAGAATTTTTTTGTTGATATTTTTATAAAAGAGGCAAAATTGTGA ATAATATTTCAAGAGCAAAACTCTATAAATACATCAAACTTTAGAAAACTGTAAAATACTTTTTT CTTAATTTGTTTTATTATTAATGTTGGAGATGTAATAAAGTTTTCAATAAATCTCGGAAATTCAA AGTGTTATCACTCCTAGAGATGACTTTTTTAATTGGACACTTTGTGAAAATTATCTTCAGAGGAG CATTTTATACTAGAAAAATTGATCTCGCCGTTTTTTTTTAATTAGGCTTTTAAAATGCGAAAATC TTCATTGTCCTAAAATCAGGAGTAATGTTTTAAAATCTGTTGGTA Right flanking sequence: Indices 5416546 -- 5417045 CTTAATCTAAAACTCTTGGCATTTCCTCCTTAAAACTGCTCTCCTGAAGATAAAAATAATCAGCA TAACTTTTGCAAAATTCGCATATCAATAATTTTTAGTAAATCTTTTGAAGTTTTCAGAAATAAAA TCAACTACCATAATTGAGAAAATCATATTTCTAACTTTCAAATATATAAAACAATTAACAGAAAC AAATGTAACAATTAATTCACACAAGAACAGAGTTAAGTATTTTAAAACATCCCAACAGAAGATGA GGAACATTATTGATAAGATTGATGCTGGTACTTAACAATAAATTGAACCATGCTATAACTTTGAA AAAGAATCGACATTTTTATATTTTAGAAGTTATGATTGGCGTAAACGAGATGAGCAGCAAAATCA TATTTTCCATCGCATAGGCTTCCACAAAGTGAGCATTTGAACGGAATATCATCTGAGTGGAGTCC ACTGTGCAAATACCACATCACTTTGTCATCGAATCTGATTTTACA Found at i:5418110 original size:7 final size:7 Alignment explanation
Indices: 5418100--5418114 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 5418090 TTTCAAGAAA 5418100 TAATGCT 1 TAATGCT 5418107 TAATGCT 1 TAATGCT 5418114 T 1 T 5418115 TATACTACTA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.27, C:0.13, G:0.13, T:0.47 Consensus pattern (7 bp): TAATGCT Left flanking sequence: Indices 5417600 -- 5418099 AAGCTTTCAAGTATTTTCGATTGCAAGACCCAACGGTTTTCAAAATTTTACTTTTAGTCTCAAAT GAAAAGTTTAGTCAACATTCGGCAAGAATCGGATCAAACGTAGGCTAAACTTAACACATCACAGC TATAACCTACTCGTAAGCAAGTAGCTGATGTAAAATCCAAATAAAAACAGTGTGTGCTTCAATTC TTCCACAGAAAAAAGTACTCACCGTATGATCCAGGTGTGCAGTATGAAAATGAAGCAGAAGACGA TGGGAACTGTTGAACCATTTGATGCAAGATTTACATTTAGCTGGAGACGATCCTCTTATGATATG CTCCGAATCTACATGAAACTGCAAACTCGTGAAGCTGTTGAACTTTGAATTGCACGCTGTGATGG GACATTCAAAGGTATTTCCTTTCTTGATATGGGTCATCATGTGCTCTTTCATCTGAGTTGGATTA AAAGTTGAAGAGATTGTTTTCTAATCTGTTTAATGTTTCAAGAAA Right flanking sequence: Indices 5418115 -- 5418614 TATACTACTAGAAAGCTCGATCTTTCTCAAAGTATATTTGAAAATACAACTTTTCTTGCATAACT GAAACTTTCATATAAAAAACTGATGGTCAGATCTGGAAAAAGTAAACGACTTTTAACAATCTTAA CTTTGTTTTCAATAAAAATATTTAAAACAAAGCTTTTAAATTTTCTCTAGCTAACAGTAAATTAA AGCCAACGTATCAGTACACATCCACAGAAAAATAATTCCCCTACATCATTTGGCATGCTGGGTGC TAATTCTCTTTTAATTTTTTAGTGCTTTGGCATTAAACATTTATTTTTGAACAGATTCGCAAATC ACAGATACCAGTAATCGTAAATTGCATTCAGTGATTATTAAAAACATCATGAAACACATAATTAA AATTTTTGTGTCAATTTCTGAAAATCAATAACACAGATTGTTTCATTCTGCTTTAAATCTGATGT ACGAGTGATAAATTGAGTCAACTTTTAGGAAGCTTTTTTCTAGCA Found at i:5419227 original size:10 final size:10 Alignment explanation
Indices: 5419212--5419232 Score: 35 Period size: 10 Copynumber: 2.1 Consensus size: 10 5419202 GAGGAATAAA * 5419212 GTCAGAGAGT 1 GTCAGAAAGT 5419222 GTCAGAAAGT 1 GTCAGAAAGT 5419232 G 1 G 5419233 ACTATAGGAT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.33, C:0.10, G:0.38, T:0.19 Consensus pattern (10 bp): GTCAGAAAGT Left flanking sequence: Indices 5418712 -- 5419211 TTTTTGGTCACTAGAGATAAAGCTTGTACTAAAACGACTAAACTTTATAAAGAAACTTCAATAAA ATATCCTCTATACAAATTTATCGGAAAACCACAAGAACTAACCCGATCATTCCGAAAAAAAGGTC TTCTGCAGAACTGACATTCAAACTTCTTTTTTCCACTGTGCATCACCTTATGACGATTCAAGTTT GTCTGAAAAAATATACATGGAAATCAAAATTTTTCTACGATTTTAGTAACTTGTTTTTTGTTGCT TTTCGATTTGAACAATGTTGTAAATTGATAATTAAAAAGAAATTTTCTAAAGATTTGAGTCTTGC GTCTCAGTTTTTCAAGAGCCAAACAAGAAAGTAGTTTACGAAACCATAAGTAACCTGGTAGGCAC TTTAGTTTCTACCTATAACCTTTAGTACTCTCCACTCACCTTATTGGAAAACTTCTGGTGACAAA TATCGCATTTTTCCATTTTGTAATTTGGAAGCTGGGAGGAATAAA Right flanking sequence: Indices 5419233 -- 5419732 ACTATAGGATTTTCTATTCCAAACTTTGGGTGGAGCACAAATTGTTTATAACTTCTCGGGTACTG TCGAAGGTCATTTGGGGGAAATATACAATCCTAGGTGTCAGATATCTTAACAAGTCGGAGAAGAA GCACATCTTCCGACATAACAGATAAGCCGGCTGCCGCTACTTGCCAGATGGTTGGTGACAAACTG GGGTGATATATAGTCAGAGGTCACTTTCATGATTTGGAAGAGAAGGTAGCAAATATAGTGGACAA ATTGATATTAAATTACAATTGGGGTCAATTTTAAGAACAGTTACAGTACTTTGGACTGTACGAGT AAAAAAATCCTTTTTTTTTTTTAGAATTAAATTTCCTGTTTCATAGAAAACATTTGTTTGACTGA TTTTAAATGTTTCATTCGGTTTTTATTTATCTCTGTAAAGTCTTTTCATTATTGTTAGAATTCAG AATTTTTACAGATTCATGAATTCACTAAAATTTTATGAGTTTCAG Found at i:5419835 original size:7 final size:7 Alignment explanation
Indices: 5419823--5419836 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 5419813 AGCGTAATGC 5419823 TCTTCCT 1 TCTTCCT 5419830 TCTTCCT 1 TCTTCCT 5419837 AATACATTAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57 Consensus pattern (7 bp): TCTTCCT Left flanking sequence: Indices 5419323 -- 5419822 CAATCCTAGGTGTCAGATATCTTAACAAGTCGGAGAAGAAGCACATCTTCCGACATAACAGATAA GCCGGCTGCCGCTACTTGCCAGATGGTTGGTGACAAACTGGGGTGATATATAGTCAGAGGTCACT TTCATGATTTGGAAGAGAAGGTAGCAAATATAGTGGACAAATTGATATTAAATTACAATTGGGGT CAATTTTAAGAACAGTTACAGTACTTTGGACTGTACGAGTAAAAAAATCCTTTTTTTTTTTTAGA ATTAAATTTCCTGTTTCATAGAAAACATTTGTTTGACTGATTTTAAATGTTTCATTCGGTTTTTA TTTATCTCTGTAAAGTCTTTTCATTATTGTTAGAATTCAGAATTTTTACAGATTCATGAATTCAC TAAAATTTTATGAGTTTCAGGATTTGTTAGTTTCAACAATAGAATCCCCCATCTCCTGCAAAACC GCAAATCACGTGGCGAAAAAAAGCGTTTTGTTCATAGCGTAATGC Right flanking sequence: Indices 5419837 -- 5420336 AATACATTAACCATGGCACAAATCGAATAAATTAGCATAATGTGTCCAGGAAGAAGACGACATTG GAAGACGTTTCTGGAGAAAAAGGGAAAAAAGGAAATCAAGTTTTTTCTCTTTTACCTTGGATGTC TGTAATATAGGATTACATGCCGGAAGAAGGTGAAGAGTGCAAAAATATTAGTTTTTAATGGAAAA TGCTTTCGATTTTAATGTCAGGAATCGAAGATTCTCCGTGATAAACTTCTGGAAATAATATTTAT ATTTTTAGTTATCGGCTTTTTGGTGTATGAGATCTGATTTATTCAGTATCCAAAGATAGCTGGAG AGGTCTTACTCAAGAAAATGTTTTCATTTATTTTCAAAAAAATATCACTGTTTCAACAAACCCTT AAAATCAAGCTATAAAAGGCAGAAATGTTTTCAATCGAGATAAATAGGCTCTGATATTTTTTCAG ATCTGAAAAATAACTATGAGTTTGATGGAAAGAATGAATGCCATT Found at i:5419930 original size:8 final size:8 Alignment explanation
Indices: 5419917--5419936 Score: 33 Period size: 8 Copynumber: 2.5 Consensus size: 8 5419907 CGTTTCTGGA * 5419917 GAAAAAGG 1 GAAAAAAG 5419925 GAAAAAAG 1 GAAAAAAG 5419933 GAAA 1 GAAA 5419937 TCAAGTTTTT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00 Consensus pattern (8 bp): GAAAAAAG Left flanking sequence: Indices 5419417 -- 5419916 GTGACAAACTGGGGTGATATATAGTCAGAGGTCACTTTCATGATTTGGAAGAGAAGGTAGCAAAT ATAGTGGACAAATTGATATTAAATTACAATTGGGGTCAATTTTAAGAACAGTTACAGTACTTTGG ACTGTACGAGTAAAAAAATCCTTTTTTTTTTTTAGAATTAAATTTCCTGTTTCATAGAAAACATT TGTTTGACTGATTTTAAATGTTTCATTCGGTTTTTATTTATCTCTGTAAAGTCTTTTCATTATTG TTAGAATTCAGAATTTTTACAGATTCATGAATTCACTAAAATTTTATGAGTTTCAGGATTTGTTA GTTTCAACAATAGAATCCCCCATCTCCTGCAAAACCGCAAATCACGTGGCGAAAAAAAGCGTTTT GTTCATAGCGTAATGCTCTTCCTTCTTCCTAATACATTAACCATGGCACAAATCGAATAAATTAG CATAATGTGTCCAGGAAGAAGACGACATTGGAAGACGTTTCTGGA Right flanking sequence: Indices 5419937 -- 5420436 TCAAGTTTTTTCTCTTTTACCTTGGATGTCTGTAATATAGGATTACATGCCGGAAGAAGGTGAAG AGTGCAAAAATATTAGTTTTTAATGGAAAATGCTTTCGATTTTAATGTCAGGAATCGAAGATTCT CCGTGATAAACTTCTGGAAATAATATTTATATTTTTAGTTATCGGCTTTTTGGTGTATGAGATCT GATTTATTCAGTATCCAAAGATAGCTGGAGAGGTCTTACTCAAGAAAATGTTTTCATTTATTTTC AAAAAAATATCACTGTTTCAACAAACCCTTAAAATCAAGCTATAAAAGGCAGAAATGTTTTCAAT CGAGATAAATAGGCTCTGATATTTTTTCAGATCTGAAAAATAACTATGAGTTTGATGGAAAGAAT GAATGCCATTTTTCAAATTGAACACGTTTCAAATAGTCCATAAAACAGTTAACAATTAATTAATT TTAATCGGGATCATGCTCGACCTCTAAACGTATTATTTCCAAAAT Found at i:5420953 original size:10 final size:10 Alignment explanation
Indices: 5420935--5420954 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 5420925 TATCCTTGTA 5420935 ACTACAGTAT 1 ACTACAGTAT * 5420945 ACTATAGTAT 1 ACTACAGTAT 5420955 TGATAGTTTT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35 Consensus pattern (10 bp): ACTACAGTAT Left flanking sequence: Indices 5420435 -- 5420934 ATTATCCGGTGAAGATTTAGATAAAATATTTAAAAATCCGTCACATTTTTTTCGCATTTTCCGAA AATTTCACAGTTTCAACATAGCTAGAAATTAAATGTATTTTAAATTCAAACTGATTGCAACGGAA TTTTAAATGTGAAATATTCAAATGTTTTTAACGTCCAACAAAACCACTGTTTCCTCTGTTTACAG TTTCTAAAGTAGTCCAAAAACCGAAAAATGAAAAAGTTTTGATTTTATTCTCTACTTATTTTTTT GCTATTTTTCATCTTGTACCTTCTACATCATCACTAATTCTGTCTAATGCTCTTGTTGCTCTTCT TCTTCCTCTGCTCATGTTGTTACTTTTTCCTAATTCCCAGCTTTTTTCTCTCTGCTTACCAGTCT AAATAATAAAAATGAGAAATCATAAATACTAAGTTGAAACAAGATACTGCAAAAGTGATATGAAA TTAGTTTTAGTGATGTAAATCTTTAACTGTTTCAATATCCTTGTA Right flanking sequence: Indices 5420955 -- 5421454 TGATAGTTTTGATAGACTTCCTTAACGCTAGGGCATATTTATGTTTAGTGGTTCTTCAAACAAAA AAAACGTCGCGGGTAGAATATTGACTTTCTTCTCCAAATCTTTCAAATATTTTTAAAATTTGACT TTAACGATTTGAGCCGCCTATTTCACAGCAGCTTTACCAACAATCCGCTCACAATTATGAAAATA AAAATGAAAAAAGGATTACCCCTTAATTCAAATTTTTCCCGGGGTCTATAAATGTTGCACAAAGT TGTTGGAGCGGGACCTCTTGGGAACCATAGGCTCCGCTCAAAAAGTGCCGTGCGCTAGATAGTGT TCTTCATGACGTCACTGGAACAAATATAATTTTTTAATAAATTTTCGTTGAGTGAAATTGTAGAA ATTTGCTTGAGTTTTTCAAAAAAAAAAACGACATGAGAATCGATTTTCATGAATCCGTGTTTAAT TTTTTTTCGGTTTCATTTTTTTCTTAAAATGCCAAGCAGCACAGC Found at i:5420966 original size:9 final size:9 Alignment explanation
Indices: 5420948--5420969 Score: 37 Period size: 9 Copynumber: 2.4 Consensus size: 9 5420938 ACAGTATACT 5420948 ATAGTATTG 1 ATAGTATTG * 5420957 ATAGTTTTG 1 ATAGTATTG 5420966 ATAG 1 ATAG 5420970 ACTTCCTTAA Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.32, C:0.00, G:0.23, T:0.45 Consensus pattern (9 bp): ATAGTATTG Left flanking sequence: Indices 5420448 -- 5420947 GATTTAGATAAAATATTTAAAAATCCGTCACATTTTTTTCGCATTTTCCGAAAATTTCACAGTTT CAACATAGCTAGAAATTAAATGTATTTTAAATTCAAACTGATTGCAACGGAATTTTAAATGTGAA ATATTCAAATGTTTTTAACGTCCAACAAAACCACTGTTTCCTCTGTTTACAGTTTCTAAAGTAGT CCAAAAACCGAAAAATGAAAAAGTTTTGATTTTATTCTCTACTTATTTTTTTGCTATTTTTCATC TTGTACCTTCTACATCATCACTAATTCTGTCTAATGCTCTTGTTGCTCTTCTTCTTCCTCTGCTC ATGTTGTTACTTTTTCCTAATTCCCAGCTTTTTTCTCTCTGCTTACCAGTCTAAATAATAAAAAT GAGAAATCATAAATACTAAGTTGAAACAAGATACTGCAAAAGTGATATGAAATTAGTTTTAGTGA TGTAAATCTTTAACTGTTTCAATATCCTTGTAACTACAGTATACT Right flanking sequence: Indices 5420970 -- 5421469 ACTTCCTTAACGCTAGGGCATATTTATGTTTAGTGGTTCTTCAAACAAAAAAAACGTCGCGGGTA GAATATTGACTTTCTTCTCCAAATCTTTCAAATATTTTTAAAATTTGACTTTAACGATTTGAGCC GCCTATTTCACAGCAGCTTTACCAACAATCCGCTCACAATTATGAAAATAAAAATGAAAAAAGGA TTACCCCTTAATTCAAATTTTTCCCGGGGTCTATAAATGTTGCACAAAGTTGTTGGAGCGGGACC TCTTGGGAACCATAGGCTCCGCTCAAAAAGTGCCGTGCGCTAGATAGTGTTCTTCATGACGTCAC TGGAACAAATATAATTTTTTAATAAATTTTCGTTGAGTGAAATTGTAGAAATTTGCTTGAGTTTT TCAAAAAAAAAAACGACATGAGAATCGATTTTCATGAATCCGTGTTTAATTTTTTTTCGGTTTCA TTTTTTTCTTAAAATGCCAAGCAGCACAGCATTAATGGATATGCT Found at i:5423477 original size:8 final size:8 Alignment explanation
Indices: 5423466--5423484 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 5423456 TTTTTCCAAA 5423466 CATTTCTT 1 CATTTCTT * 5423474 CATTTTTT 1 CATTTCTT 5423482 CAT 1 CAT 5423485 CGCATCATTT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.16, C:0.21, G:0.00, T:0.63 Consensus pattern (8 bp): CATTTCTT Left flanking sequence: Indices 5422966 -- 5423465 AAAATTAATATGACGTTTCTAAATTTCAAAAAAAAAAGACACAACCAAACTACGTAACTCACAAC AGTATAAATAGTGATCTTGAAACAGAGAAATTTGAGAAAATGAAAATTGTCGCAATTTCTAAAAT GTATCTAAAATTTTCTTTTCATCTCCCATTAACGTAGTTAAAGCAAAAGAAAAAAAAAATTAAGA TTATGTATTTGCACCAGTGAAAATGAACATTTCAAAAAAAAAAACTCCTAATTCCTTATAAAATA TGAAATTGAAAGTGAAACGAGAAAGACTTGAAAATTTTTGGAATATTTGCATTACCTAATGCTTT CTTTTCGAAATATTTTATTAAAAACCGGAGAACTTTTTTTTTGTTTTAAAGTCCAATCACCACAT TATTGTCTAAAAAGATGAATAGATGGAACACCTTAGAAAATAAAATTCCAAAAAAAAACTTTATG CCGATCGTTTCACTTATCAATCATCGTTTTCCGTTTTTTTCCAAA Right flanking sequence: Indices 5423485 -- 5423984 CGCATCATTTATCATTTTCATCTTTTCACACTCTTTTCGAGTGCTTGCTCCTTTTCGGAGAAACC CTCTTGAGATGTTTCAAAGTTTCAATATTTTCTCCAACCCAAACTTTCTTTGCAATTTTTCAGGT GACTTTTTTAAAATTTTATTCTTCTATGTAAAAACAAAATCTATCAAAATTTTAAAAATCTGTAA ATGTAAATTTCGATAATTTGAAATTAACTACCAAAAAAATTTAATAAAAAACTACTGTTTCATGA AATGATTATAGAATTTTCAAAAAAAAAAATTTCTATTAGTGCCGCATTTTAATTTTTGTGATTAC TCAAAATGCCACTTTATCTGACTGTGAGTCGTCAACATTTTAAATTCTGTCTTGAATAGTCAGAT GGTGTACTCATAACATTGTAGTTGACATAGACTAACACTTGCGCCTGATCTGGAGATCACTATTG AAACGTGACCCGTTTCAAAACTTTGGAGACATAATAAAAATAACA Found at i:5423500 original size:7 final size:7 Alignment explanation
Indices: 5423488--5423505 Score: 29 Period size: 7 Copynumber: 2.7 Consensus size: 7 5423478 TTTTCATCGC 5423488 ATCATTT 1 ATCATTT 5423495 ATCATTT 1 ATCATTT 5423502 -TCAT 1 ATCAT 5423506 CTTTTCACAC Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 6 4 0.36 7 7 0.64 ACGTcount: A:0.28, C:0.17, G:0.00, T:0.56 Consensus pattern (7 bp): ATCATTT Left flanking sequence: Indices 5422988 -- 5423487 ATTTCAAAAAAAAAAGACACAACCAAACTACGTAACTCACAACAGTATAAATAGTGATCTTGAAA CAGAGAAATTTGAGAAAATGAAAATTGTCGCAATTTCTAAAATGTATCTAAAATTTTCTTTTCAT CTCCCATTAACGTAGTTAAAGCAAAAGAAAAAAAAAATTAAGATTATGTATTTGCACCAGTGAAA ATGAACATTTCAAAAAAAAAAACTCCTAATTCCTTATAAAATATGAAATTGAAAGTGAAACGAGA AAGACTTGAAAATTTTTGGAATATTTGCATTACCTAATGCTTTCTTTTCGAAATATTTTATTAAA AACCGGAGAACTTTTTTTTTGTTTTAAAGTCCAATCACCACATTATTGTCTAAAAAGATGAATAG ATGGAACACCTTAGAAAATAAAATTCCAAAAAAAAACTTTATGCCGATCGTTTCACTTATCAATC ATCGTTTTCCGTTTTTTTCCAAACATTTCTTCATTTTTTCATCGC Right flanking sequence: Indices 5423506 -- 5424005 CTTTTCACACTCTTTTCGAGTGCTTGCTCCTTTTCGGAGAAACCCTCTTGAGATGTTTCAAAGTT TCAATATTTTCTCCAACCCAAACTTTCTTTGCAATTTTTCAGGTGACTTTTTTAAAATTTTATTC TTCTATGTAAAAACAAAATCTATCAAAATTTTAAAAATCTGTAAATGTAAATTTCGATAATTTGA AATTAACTACCAAAAAAATTTAATAAAAAACTACTGTTTCATGAAATGATTATAGAATTTTCAAA AAAAAAAATTTCTATTAGTGCCGCATTTTAATTTTTGTGATTACTCAAAATGCCACTTTATCTGA CTGTGAGTCGTCAACATTTTAAATTCTGTCTTGAATAGTCAGATGGTGTACTCATAACATTGTAG TTGACATAGACTAACACTTGCGCCTGATCTGGAGATCACTATTGAAACGTGACCCGTTTCAAAAC TTTGGAGACATAATAAAAATAACAAGTGTTCCAGAAGTTAAGAAC Found at