TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_IV Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 17493785 ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33 Found at i: i:11265249 original size:9 final size:9 Alignment explanation
Indices: 11265235--11265259 Score: 43 Period size: 9 Copynumber: 2.8 Consensus size: 9 11265225 TGACCATTGT * 11265235 CTCCTGGTG 1 CTCCTGGAG 11265244 CTCCTGGAG 1 CTCCTGGAG 11265253 CTCCTGG 1 CTCCTGG 11265260 GAATCCATCG Statistics Matches: 15, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 9 15 1.00 ACGTcount: A:0.04, C:0.36, G:0.32, T:0.28 Consensus pattern (9 bp): CTCCTGGAG Left flanking sequence: Indices 11264735 -- 11265234 AGAAGCAGTATGCCTACAATTTTTTTTGCATTATAGCAGTATTCGGAAATTCATTATTGACACTT CCAGTTTTCCATTCATTTTTCCACTTTGCTACAATTCGATAGAGCTTAGGCAAGTAAAATGGAAA TTGTTTATTTTGTACGTTTAAAAGAAATATGACAAGAATTGAGAAAAACCATTTTAATGACGGGA AAGGAAAACAGCGGATCTTGGTGGGCAGGCACAATAAGCGGCATCGTTTCCTGGAAGTCCTGGTC CTCCTGGAGCTCCTGGTTGTCCATCGGATCCATTGTTTCCTGGGAATCCGTCTTGTCCGGCTGGT CCAGCTGATCCTGGTGCTCCATCTTGTCCTGGGAATCCATCTTGTCCAGATGGTCCAGCTGGTCC AGCATTTCCTGGAGCTCCTGGTGCTCCTGGAGTTCCAGCTCCACGTTGTCCATCGGCTCCTGGTT GTCCTGGAGCTCCATCTTGTCCTGGGAATCCTGGTTGACCATTGT Right flanking sequence: Indices 11265260 -- 11265759 GAATCCATCGTTTCCACGTTGTCCTGGAGTTCCTGGTTGTCCAGATGGTCCTGCTGGTCCTGCTG GTCCGGATGATCCAGCTGGTCCGGCTGGTCCTGCTGGGCACTTAATGCAATCGAATGAAACTTGT GGGCAGTTGATTGGAGCATAGGTAACAGTGCTGTCGCCCCCTCTTGGTCCTGGAGCTCCTGGGAC TCCTGGTGCTCCTGGCTGGCCTGGTGGTCCTGGTGGTCCTGGTGGGCAAGTTGGCTTAGTTGGCT CACACTGGCACCAAGCTGGAAGTCCAGAGAAAGTTTGACGCTTTTGACGGAAGACAGAGTTGAAT GGATTGACACGTGGCTTAGTTGGTGGAGTGACAGTAACCTGAATGTCCATCATCTCGGTCCAAGC AGAATCGGTTTCAACACGGAAAACGGAAACTCCATCAAGAACCTGAAATTAATTAATGTGATGAA GTGAAACTGTATGAATAACTTACTTGATCATGAACTTCGTTGATG Found at i:11265677 original size:7 final size:7 Alignment explanation
Indices: 11265665--11265678 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11265655 CGGTTTCAAC 11265665 ACGGAAA 1 ACGGAAA 11265672 ACGGAAA 1 ACGGAAA 11265679 CTCCATCAAG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.14, G:0.29, T:0.00 Consensus pattern (7 bp): ACGGAAA Left flanking sequence: Indices 11265165 -- 11265664 CCACGTTGTCCATCGGCTCCTGGTTGTCCTGGAGCTCCATCTTGTCCTGGGAATCCTGGTTGACC ATTGTCTCCTGGTGCTCCTGGAGCTCCTGGGAATCCATCGTTTCCACGTTGTCCTGGAGTTCCTG GTTGTCCAGATGGTCCTGCTGGTCCTGCTGGTCCGGATGATCCAGCTGGTCCGGCTGGTCCTGCT GGGCACTTAATGCAATCGAATGAAACTTGTGGGCAGTTGATTGGAGCATAGGTAACAGTGCTGTC GCCCCCTCTTGGTCCTGGAGCTCCTGGGACTCCTGGTGCTCCTGGCTGGCCTGGTGGTCCTGGTG GTCCTGGTGGGCAAGTTGGCTTAGTTGGCTCACACTGGCACCAAGCTGGAAGTCCAGAGAAAGTT TGACGCTTTTGACGGAAGACAGAGTTGAATGGATTGACACGTGGCTTAGTTGGTGGAGTGACAGT AACCTGAATGTCCATCATCTCGGTCCAAGCAGAATCGGTTTCAAC Right flanking sequence: Indices 11265679 -- 11266178 CTCCATCAAGAACCTGAAATTAATTAATGTGATGAAGTGAAACTGTATGAATAACTTACTTGATC ATGAACTTCGTTGATGGTATTGTAGAGAGATGGAACAGTGAAAAGAACAGCCAAAACTGCAATGG ATGCAGCTCCAGTTGAGATGGTTACAAGAATCTTCTCCATGTCGAAATGGTACCTTTTCTCTTGT ATTTCTTTTCTTTTTATACTCATCTTTTCTTCATTCTTTATGAATGTGTTACTCCTACACTTTTT TGCAATAAGGTGGAAGAGTGTAAAGCAATATTCAGTTAAAAACATTACTTCCTCATTAAAAGGAA GAAGCCACAATTAGGCGCGGAAGGTCGGACAGTGGACGTTGTAACCTACAAAAAAGGAAAGCAAG GACAATGCGATTTCCGCAAGACAACAAATAAACTTGAATTTATGAACTTTTGGTAGATGGCAAGA GAGAGAGAGAAAGGGTTTAACCTGGCCACAATCCTGTGTTTATTT Found at i:11266662 original size:9 final size:9 Alignment explanation
Indices: 11266644--11266663 Score: 33 Period size: 9 Copynumber: 2.2 Consensus size: 9 11266634 TATCAGATGG 11266644 TGGAGGAAC 1 TGGAGGAAC * 11266653 TGGTGGAAC 1 TGGAGGAAC 11266662 TG 1 TG 11266664 ATGAAAGTGA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.25, C:0.10, G:0.45, T:0.20 Consensus pattern (9 bp): TGGAGGAAC Left flanking sequence: Indices 11266144 -- 11266643 AAGGGTTTAACCTGGCCACAATCCTGTGTTTATTTACTTCTTGTATCTAGTTAATATGTATGTAG AATATTTTAGCAGATTTTGTATTTGGATTGAAATAAAACATTTTTTATTAATAAAAATTAAAAAG GGTGATGTTGATTAATATTAGAAAGTTCGGGGAAAAATTGAGAGACAATATCTTTATTAAAAACT GGAGTCAATCTGAATCCATCTGCCCAATTTTTTTCCAATGGTTTGTTCATTTCATCAGTTGTCAT TCCATTTGGACGAAGAAATTCTTCAATTGATTTTGTCATTTCAAGAGGAATTTTCGGAAATGATG AGAGTGAATTCGGGCGGTATGGAGATTGGAAAGGACTTGAATTTGCTGGATAAGAAGAGGTAGAC GGCATTTGAGAATAATCTGTGTACTGTTGTTGTGGCGGTGGAGGTGCACTGATTTGACAAGGAGA CAATGATGGAGGTGAGAAATGGAATAAAGGAACTGTATCAGATGG Right flanking sequence: Indices 11266664 -- 11267163 ATGAAAGTGATGATCCCATTTGAGTTGATAATTTACGACAGTTAGCAGTTGTCAGCAGAAGATCT GATACTTCTGGATTTATTATGTCGGTGAGAATTTTGTGGAATGGGATCTTGGGATCAGAATCCCG GACAAAAAATGGTTGCTGAGATTGTCGAATTCGAGATGCCAGATTCTGAAATCTTGTTCTCATAA AATACACATTATTTCAAATAATAGCTTTATGAACTCTCTAATGTTCTAAAGCTACCATGATTTGG TTTTAATTCGCTACACTCCGTTTGAAACACCCAAAATACAAAAGAAGATATAAGCTTAAATTGTG AAATTGGAACTGTAAACTATGAATTCAAGATTTCGGGTTTTGTCCACAGATTTAATGTTAGTTTT AGCAAAATATTTGTATAGATCCATAACTCACCCGGGATTCATAAACAAAATGAAGAATAGTTGAT AAACTGTTTGCTGCTGATATTGAAGTCTTGTTTCTACTGTGTTTG Found at i:11268059 original size:8 final size:8 Alignment explanation
Indices: 11268042--11268062 Score: 35 Period size: 8 Copynumber: 2.6 Consensus size: 8 11268032 GATAACACTG * 11268042 TTTTTCCT 1 TTTTTACT 11268050 TTTTTACT 1 TTTTTACT 11268058 TTTTT 1 TTTTT 11268063 CTCGATCTGG Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 12 1.00 ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81 Consensus pattern (8 bp): TTTTTACT Left flanking sequence: Indices 11267542 -- 11268041 TGAATCATTGTATCACTTATCAATGCGCTCTGGAAAAAAGTTTTTTGTGATTAGCAGCTCAAATT CTTAAGCTAGACCATTTTTGCAATGGTCTATAGGCGAATGTTCTGATATTCTCCAAAAGATTACC TTATCTTCAACACTAAACTTTCTACAGTGTTCTTCTTCCAACATGACCAAAAATCGATCAATGTA ATCGACACATTGCACAATTCTCTCTATTCCCAAAAATTGTTCATTCAACTGTCTGGGTGAATTTG AACAATCCATGGCTTCAGAATCTCCAGTTTTCCGTGCCAATGAACGATCAGCTATTAAACTTTTC AGTGAAAAATTTCCTATTCCATCAAAATTAGTTGAAGTTGAACATGTTTCGGCGAGTTTTCCAAT TTCAGAAAGTTGTTTTCGTGATGATGGAGATAAAAATGATGTCCAATCAGAAGGATCTGCTAGTC GATATGACAAACTTCGAGACACACTTTTCTTTTTTGATAACACTG Right flanking sequence: Indices 11268063 -- 11268562 CTCGATCTGGTCGAACATCTGAAACAAAAATTATCTTGAACTGTTCAAATTTAAATAAAGTTTGC GAACTTACAATCTGGGTTCATTCCGACAAGAAGGCATTTTCTGAAACGGCAGTATCGGCAGGCAT TTCTTTCAACTAAAATATTCAAAAGTTTAATTAAAAGATCCAGGATAAATGAAACGTACATTTGG TAACTTCACAATTTTTCTCAAATCTACAAACATATTTGTTTCGTCCGTCTTTTACTGCTCTCCGG AAAAAACCTTTACATCCAAAACAAGCTAGAACGCCATAATGAATCTGAAAAGTTTTAGGCTTTTT ATATTTAAAATTGTTTTTTGTTTTTTTTTAATCTGGCATTAAAATTCAAATATTCTTGATCGGAG CATTTCTGCTTTTATCAATAAAAACATTTTCTGGTAGGACAACAAAAGCAAAAATTACCCTTGAA GAAAAATGATCTACATATGACAATTTTTAAAATACCATGTCGGTT Found at i:11268410 original size:7 final size:7 Alignment explanation
Indices: 11268398--11268413 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 11268388 ATATTTAAAA 11268398 TTGTTTT 1 TTGTTTT 11268405 TTGTTTT 1 TTGTTTT 11268412 TT 1 TT 11268414 TTTAATCTGG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88 Consensus pattern (7 bp): TTGTTTT Left flanking sequence: Indices 11267898 -- 11268397 TTGAAGTTGAACATGTTTCGGCGAGTTTTCCAATTTCAGAAAGTTGTTTTCGTGATGATGGAGAT AAAAATGATGTCCAATCAGAAGGATCTGCTAGTCGATATGACAAACTTCGAGACACACTTTTCTT TTTTGATAACACTGTTTTTCCTTTTTTACTTTTTTCTCGATCTGGTCGAACATCTGAAACAAAAA TTATCTTGAACTGTTCAAATTTAAATAAAGTTTGCGAACTTACAATCTGGGTTCATTCCGACAAG AAGGCATTTTCTGAAACGGCAGTATCGGCAGGCATTTCTTTCAACTAAAATATTCAAAAGTTTAA TTAAAAGATCCAGGATAAATGAAACGTACATTTGGTAACTTCACAATTTTTCTCAAATCTACAAA CATATTTGTTTCGTCCGTCTTTTACTGCTCTCCGGAAAAAACCTTTACATCCAAAACAAGCTAGA ACGCCATAATGAATCTGAAAAGTTTTAGGCTTTTTATATTTAAAA Right flanking sequence: Indices 11268414 -- 11268913 TTTAATCTGGCATTAAAATTCAAATATTCTTGATCGGAGCATTTCTGCTTTTATCAATAAAAACA TTTTCTGGTAGGACAACAAAAGCAAAAATTACCCTTGAAGAAAAATGATCTACATATGACAATTT TTAAAATACCATGTCGGTTATACTCTGTATTTCACGACTAACAAATGTAATAAAATTAAATTAAA TTTCTTAGAATTTTTAAAAAACTGGGGTATAAATACAACTACATACAATTATTTTTCATCAAATT CTTAACTTTTAATCAATTTACCTTAGCCGGTGTATCTCCACAAACTGCACAAATTCGATTAGTGT ATGATTGCATATTAACTTTCGAACAATGCGTGAATAAATGATCAATTTACGTCATGAAACAGAGA CTCCAATCGGATAGACTACTCACCTGAAAACGGGTACTGTTTTGTTGTAGGGTAGGGGACACTGA GAGATGAAGAGAGGACATACTGACCGATTTTGACGCAATTTTTGT Found at i:11269550 original size:7 final size:7 Alignment explanation
Indices: 11269538--11269552 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 11269528 ATACCTTCAA 11269538 AAAAGAG 1 AAAAGAG 11269545 AAAAGAG 1 AAAAGAG 11269552 A 1 A 11269553 CAGAAACGCA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00 Consensus pattern (7 bp): AAAAGAG Left flanking sequence: Indices 11269038 -- 11269537 AGATATGAAAAATTTAACAGCAAAACATATGCACATTCAGAAGGTCATTTATCTTTGTCGTGTTG AAGGGCAATTCACAAAGGGTATTTTAAAAAGTAATCAAAAAATATTTTGATTGGCACGCATTTCA TGCTGTACGGTAGAAAGCACGGTGTAAATTTAAAAAAAAACCATTTGAATCATTCTGGATTTAAT TACACCTACATCTGTGTCAATCTTTTTCAGAGCAATTATAAATGGTTCAACATTGGGTACTTATA CTTTTACATGGAGTAGAACAGTGTTGATGTCTGATACTATTGAAAAAACTAAAAGACTGTAAATT AAAATCTGAAATTTGTAATCCAACATTTGAAATACAACTTTTTCAATTTCAGAAGACTTCTGTAA ACTGTGTAGTAAATCAGCCAGTGATATGGAAAGGGTGAGTCATTTTTGCTAAGTCAATGAGCAGA GAGAGCTCCTGGCTCGTCGTTGCTCCGTCAAAAAGATACCTTCAA Right flanking sequence: Indices 11269553 -- 11270052 CAGAAACGCAAAAATGTTATGGTCTTTGTGTGAACTTTTGAGCAATCAGAAAGTCGAATTCTTTG AGGAATGAAAAGAAAAGAAGACAGGGCAAACGGAAGGAGCTTTTTTTATACAGTACTCAGAGTCT GAGAGTCTTTAATGAAGAAAAAAATAGGAAAATAGATCGGAGGAAAGTAAATTGTAAAATAGTTT GTTAAAAGATTGAGCCAGACGGCACTATTGTTTGTCAAAAAGCTTTTGTACAATTTTTCAATAAA AAGTGATTTTTTGATTGCAAAGGTAGATTATAGTTTACGTTCCATGGTTTAAGATATCATTTTTT GTTACAAGAAACACTATGTGAATTTAATTTCAACGAACACAACGACTGATTGAAAAAATAAAGTT ATCGAAAAAATGGAAACATTTTAAAAAGCACATCCACCTATGTATTTAACCTAAAAAAGATTTAA AAAAAGGTCAAAGTGACCAAAAATTTCCATGCACTAGTTCAATTC Found at i:11270688 original size:9 final size:9 Alignment explanation
Indices: 11270676--11270698 Score: 46 Period size: 9 Copynumber: 2.6 Consensus size: 9 11270666 TCTATCATAT 11270676 CAAAATTTA 1 CAAAATTTA 11270685 CAAAATTTA 1 CAAAATTTA 11270694 CAAAA 1 CAAAA 11270699 AATGCAGGAA Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 14 1.00 ACGTcount: A:0.61, C:0.13, G:0.00, T:0.26 Consensus pattern (9 bp): CAAAATTTA Left flanking sequence: Indices 11270176 -- 11270675 GAGATGCATTTTTTGGAAGTTCATGAATCGGGAAAAATGTCTGATTTGAGAAATAAGAAAATAAA TTAATTCACTGAAAGCATATCAGTGTCAGTCTATTGAGCTATTGTTACTAAGCTCTTACATTGGT GACTAGCTTTAAAAAATCAGTACAAAACTTTTTTTAATAGTCACTTTGAATTCCACGGGTAGTTC TGTAGCTCTCTTTTTCTAGACAACTTTCAAAAGTTCAATAGTACACATAGCTCTACACGTACTCA AAAAGAAACGATAACACAAATATCAGAGAACACTCTTGACAAGCGAAGGTAAATATATTTAGATG TTACCGTCCTGAAACTAGTTTTCGAAAGAAAGTTCATAAAATCTGTGTTCAGAAAATAGGAGTCA ATACATGCTTCAATTGCGTAACGTTTCAAATTCATTGTAGTTGAAATCTACGGAAGTTCAAACTA TTACTTTTTCATGGAATTTAACATAGAAATGAGTATCTATCATAT Right flanking sequence: Indices 11270699 -- 11271198 AATGCAGGAAATTTTGAATTATATTAGTCAGTCTTTAGGTTTATCCAGATAATTTTGGCTTTTAA GTGCATTTTCAACGTAATGTTTGAGCAATTCATTACAATAGGCGGTAGAAAGCTAATTTCAAAAA ATTTTAGAATTAAATTTTTTTTACAATTGATAAGATGTTATATTTATTACGGGATGGTCCATAAT TTTGTTGAATTAAAAAATTTGATCGTTATAAAATTTGAAGATTCTTATATTCAGCCATACCTCAG GCAGATTAATAGAAAAATTAGTATTGCCGGTAAGATTAATTTTCAATCGATCAGTGGTGCACGAC TATTAGAGACTGCAATACCAGTTTTCGGTTGCCTAATGACTTTGGGAAAATGGTACGTAGCTGAA ACTCACCGCTGTTTATTTTTTCCAAATGTGCTTTCAAGCTGCTAGTAAAATAACACACTTTCCAG AGCTTTTGAAAATAAAATCACAGCACTCCATCTCAGGAGTCCTGC Found at i:11271392 original size:8 final size:8 Alignment explanation
Indices: 11271375--11271392 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 11271365 AACACGAGTT 11271375 GATCGAGA 1 GATCGAGA * 11271383 GATTGAGA 1 GATCGAGA 11271391 GA 1 GA 11271393 CGGAGACAAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.39, C:0.06, G:0.39, T:0.17 Consensus pattern (8 bp): GATCGAGA Left flanking sequence: Indices 11270875 -- 11271374 TTACGGGATGGTCCATAATTTTGTTGAATTAAAAAATTTGATCGTTATAAAATTTGAAGATTCTT ATATTCAGCCATACCTCAGGCAGATTAATAGAAAAATTAGTATTGCCGGTAAGATTAATTTTCAA TCGATCAGTGGTGCACGACTATTAGAGACTGCAATACCAGTTTTCGGTTGCCTAATGACTTTGGG AAAATGGTACGTAGCTGAAACTCACCGCTGTTTATTTTTTCCAAATGTGCTTTCAAGCTGCTAGT AAAATAACACACTTTCCAGAGCTTTTGAAAATAAAATCACAGCACTCCATCTCAGGAGTCCTGCC CCAAATTGGAAAATAGTGTTTATTGGAAATCTCGTTTTAAATCACTTTTTAAGGTAGAACTCAAA CAACCCAAATTCCAATTTTCTTGGGAAAAAACAAAGGATTGAAAACTGGGAAAGTGATCACCGTG AATTGTAATGGTATTTAGAGTGAGTATGTGCCACAAACACGAGTT Right flanking sequence: Indices 11271393 -- 11271892 CGGAGACAATGATCTGTTACTGTTTTGTCTGGGTCTCCATAAGTTACACACTATTCTCACAAAGT TTGTGTTTGAGTTGGAATAATAGAGAGCGACAAAATCGACAGAAAAGTTGGAGAATAGAGGAAAA ATGCCTTTCGGAGATGACGCCATCCCGTTTTTTTAGTGGATTTTCGTAGTTTGTGGTCTAGAATT CTGGAAGTCGGTATACTTAAAGAAAAACAATCTGCGATTACTGTAGTTACAAGCAAACAGTAATT GTTGCTCAAAAACGTTTAAAAACAGATTTGGGTCAGTGAACATGTAAAACGAGTGGATGAGTCAT CCAAAGCAATCATAATTGGATTTAAAAATAGAGAAGTTGCAAACTTCATTGCAAACAATCTGGGT TCTTGCTCAAAGCAGGCACCGACGCCTGAAGACGAGACTGCCGGACACGAAAGCTCTAACTGCGT TATTACTTATCATATCGGTTTTTTTCGATCTGAATATCAAAGCAC Found at i:11272199 original size:8 final size:8 Alignment explanation
Indices: 11272184--11272201 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 11272174 AGTTCCACAG 11272184 TTCCAGTT 1 TTCCAGTT * 11272192 TTCGAGTT 1 TTCCAGTT 11272200 TT 1 TT 11272202 TCTTTCAGAG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.11, C:0.17, G:0.17, T:0.56 Consensus pattern (8 bp): TTCCAGTT Left flanking sequence: Indices 11271684 -- 11272183 GTCAGTGAACATGTAAAACGAGTGGATGAGTCATCCAAAGCAATCATAATTGGATTTAAAAATAG AGAAGTTGCAAACTTCATTGCAAACAATCTGGGTTCTTGCTCAAAGCAGGCACCGACGCCTGAAG ACGAGACTGCCGGACACGAAAGCTCTAACTGCGTTATTACTTATCATATCGGTTTTTTTCGATCT GAATATCAAAGCACTTGTACACAGAAGTCTGGTCAATATTCGCTCCCATCCAGCCATACGTGTAC AGTGCTGGTCATAAAGGATGCACAAACGGTTTTTTAGTGAATTTTAGGATGTGTTTAATTAACCA TAACTCAAAAGCTAAATATTATTTTTGAAAACCGTCAACTAACAAAATGTTGGTCATTATGTTGT CTTTTTTCAAAAACAATATTTAGTTTTTGAGTTATAGTTAATTAAACACATCCTAAAATTCACGA AAAAACCGTTTGTGCATACTCTTGGCCAGCAGTCTAGTTCCACAG Right flanking sequence: Indices 11272202 -- 11272701 TCTTTCAGAGCCTTCAATGTGTTTAATTATCTAAATGAGTAATGAACAAATAAACAGAACAAAAA AACAGCCCCATTCTATTTTGTTTTGTTCGAAAACACATTTTTCAACTCTACTTCTTTTTGTTTTT CTGTGTTCCTTTCTTTTTTAAGCGCCCAATACTCGTGGTTGACTAATTCAATCTAGATATACTAA ATCTTTTTTGTCTGACAATTGTGAGTTTATTTTGTTGAAACTTGTCGAGCACGAATTCTAACTTT ACAGTACTTATTTCAAAAATTGACTTGAAAATTACTGTCAAACTCGATATTATTTATCCGTGCCT GCCTGTTTGTTGTTTTTTTTAAATTTATATTGTAATTACAAGTCAGAAATATTTGGAGATTATCT TCAGGACAAAATTCGAAAACTGAAACTCGAGCAAGAACTTTCAAATTTATATTTCGAAGACAGAA AAAACTTAAAACTTGAAATAGTTGAATAAAATAATCTGTTTTGTA Found at i:11272669 original size:7 final size:7 Alignment explanation
Indices: 11272657--11272674 Score: 29 Period size: 7 Copynumber: 2.6 Consensus size: 7 11272647 GAAGACAGAA 11272657 AAAACTT 1 AAAACTT 11272664 AAAACTT 1 AAAACTT * 11272671 GAAA 1 AAAA 11272675 TAGTTGAATA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.61, C:0.11, G:0.06, T:0.22 Consensus pattern (7 bp): AAAACTT Left flanking sequence: Indices 11272157 -- 11272656 CTCTTGGCCAGCAGTCTAGTTCCACAGTTCCAGTTTTCGAGTTTTTCTTTCAGAGCCTTCAATGT GTTTAATTATCTAAATGAGTAATGAACAAATAAACAGAACAAAAAAACAGCCCCATTCTATTTTG TTTTGTTCGAAAACACATTTTTCAACTCTACTTCTTTTTGTTTTTCTGTGTTCCTTTCTTTTTTA AGCGCCCAATACTCGTGGTTGACTAATTCAATCTAGATATACTAAATCTTTTTTGTCTGACAATT GTGAGTTTATTTTGTTGAAACTTGTCGAGCACGAATTCTAACTTTACAGTACTTATTTCAAAAAT TGACTTGAAAATTACTGTCAAACTCGATATTATTTATCCGTGCCTGCCTGTTTGTTGTTTTTTTT AAATTTATATTGTAATTACAAGTCAGAAATATTTGGAGATTATCTTCAGGACAAAATTCGAAAAC TGAAACTCGAGCAAGAACTTTCAAATTTATATTTCGAAGACAGAA Right flanking sequence: Indices 11272675 -- 11273174 TAGTTGAATAAAATAATCTGTTTTGTAGGCAGGCAATTATTTTTGGCGTAAGTGGCTTCTCAATT TTCGGTTTCAATAAAATTTGCTATAAGTTAAACTAGGAAATGACCACCCGATGTGTCGAGAATTC TTTTTTTCTGACGTCATTCTTAATCGTGATATCAGTTCAGAATCTCTTTGATCAAATGAAAAATT GAACTTTCAATTATTTATAATTCGTCAGATGGATGTGCATTGATCCATATCAGTGTTCTCCGTAT TCATTATCATTGATTAAATCAATCTTTTCCGATGATAATGTAGCATTTGATTTTGATTTATTCGA ACAACAATACCCACTTACAATTTCATTCTTTCACTCTCTTCGTCTCAATTTCAACTTTTTTTTTG TTTTTATCATTGATAATTTGATTTTGTTCCCTTTCTCTGTTGGTAGAAAAAACTTAAAACTATGA AAAAAGTTATAGTCATTCCGATTCACCAGGTTAAAAATTTTGATT Found at i:11274050 original size:7 final size:7 Alignment explanation
Indices: 11274040--11274056 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 11274030 TAATAGAGAA * 11274040 TATACGG 1 TATACAG 11274047 TATACAG 1 TATACAG 11274054 TAT 1 TAT 11274057 GAGTTTAAAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35 Consensus pattern (7 bp): TATACAG Left flanking sequence: Indices 11273540 -- 11274039 AGAAAGGTTTGGATTTTAAATTTAATGATCTTGAGAATTATTTGTGATTTCCAAATAAATACCGT ATATTATCTATTAGAGCGGCGTATCTAATAGAACGGCGTATCTATTAGAGCGGCACCCCAACTGG TCCTTCGAAAATTAGAGCGGCAGTCTCTATTAGTGCGGCACCCCTTTTTTGGTTGGGAAAGCCAC TTCAAATATTCAGTTACTTCAATGGTATTCTTGTTCATTCTTCAATATTTCTTATAAATTTTCAT TGAAACATTGAATTTTAGTGTCTTTGGGAGGCAAAAATACACAATTTTGATAAATTTTCACATAA AATATGATGTTTTATTAGGGACTTTTGAGGTTACTACTATCGAAAATAGCAAACTCAAAGTGAAA AGTAGTTATCGAAAATTAGTGCGGCAGTCTCCAGTAGAACGGCAGTCTCTAAAAATGCGCAAGTC CCGGAGAGTCCGGAAATTAGTGCGGCATGCCTCTCTAATAGAGAA Right flanking sequence: Indices 11274057 -- 11274556 GAGTTTAAATGTAAAATTATGTGTGTCCGGCACGAGCTCTTTGAAATTTTATTTTCATATTCAAC GTTTTCTCATAATTAGAAAACATGTTAATCTTACATGTATGCTTATGTTAGTTTAATTGTTTTTA ATTTGATAAAAAGTAGAGAAAATAGAGAAACACGCGGGTACACTAGCTGGAAATTTTTTACCCGA GAATGATGACTTAAAATAACGTGGTCTTTAAAAAATAATGAGCATTGTTTTCTCCTTTTTTATGA TGCTAGTCATACATTTTGGGCACACACTTTTCTTATATGAAAGTCCTAGGTTGAAGTGCCGTCCG CCAAAAGTAAGAAGATCAATTGGATCAACCGTACAAATTTTTATTTTTATTTTTTGATATCTGAT TTTTAGGTAATTTTTTGTTACGTCACATTCACTTTTCATTTCAGTGCATACGGTATAGCGGATTG TCATTGTAAACGTCTAAAAAGTATATGTCGATTTTAGAACCGGAT Found at i:11274214 original size:9 final size:9 Alignment explanation
Indices: 11274196--11274216 Score: 35 Period size: 9 Copynumber: 2.3 Consensus size: 9 11274186 AATTTGATAA * 11274196 AAAGTAGAG 1 AAAATAGAG 11274205 AAAATAGAG 1 AAAATAGAG 11274214 AAA 1 AAA 11274217 CACGCGGGTA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.67, C:0.00, G:0.24, T:0.10 Consensus pattern (9 bp): AAAATAGAG Left flanking sequence: Indices 11273696 -- 11274195 CTATTAGTGCGGCACCCCTTTTTTGGTTGGGAAAGCCACTTCAAATATTCAGTTACTTCAATGGT ATTCTTGTTCATTCTTCAATATTTCTTATAAATTTTCATTGAAACATTGAATTTTAGTGTCTTTG GGAGGCAAAAATACACAATTTTGATAAATTTTCACATAAAATATGATGTTTTATTAGGGACTTTT GAGGTTACTACTATCGAAAATAGCAAACTCAAAGTGAAAAGTAGTTATCGAAAATTAGTGCGGCA GTCTCCAGTAGAACGGCAGTCTCTAAAAATGCGCAAGTCCCGGAGAGTCCGGAAATTAGTGCGGC ATGCCTCTCTAATAGAGAATATACGGTATACAGTATGAGTTTAAATGTAAAATTATGTGTGTCCG GCACGAGCTCTTTGAAATTTTATTTTCATATTCAACGTTTTCTCATAATTAGAAAACATGTTAAT CTTACATGTATGCTTATGTTAGTTTAATTGTTTTTAATTTGATAA Right flanking sequence: Indices 11274217 -- 11274716 CACGCGGGTACACTAGCTGGAAATTTTTTACCCGAGAATGATGACTTAAAATAACGTGGTCTTTA AAAAATAATGAGCATTGTTTTCTCCTTTTTTATGATGCTAGTCATACATTTTGGGCACACACTTT TCTTATATGAAAGTCCTAGGTTGAAGTGCCGTCCGCCAAAAGTAAGAAGATCAATTGGATCAACC GTACAAATTTTTATTTTTATTTTTTGATATCTGATTTTTAGGTAATTTTTTGTTACGTCACATTC ACTTTTCATTTCAGTGCATACGGTATAGCGGATTGTCATTGTAAACGTCTAAAAAGTATATGTCG ATTTTAGAACCGGATTCTTTCTAACTTTTCTGAAATTAAGACTTCTTGGCATTGACGGCTGAATG TTGATGTCAAGAATACTTTTTGAAACGGTGAATTTTAAATTTTCAGACATCGTACATCTTCATTC CTCCGATTGTTAAATGCTCCGAGAAATTCCATGTGCAATGCCAAC Found at i:11275620 original size:8 final size:8 Alignment explanation
Indices: 11275607--11275622 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 11275597 AATTTTATTT 11275607 TTGAATGA 1 TTGAATGA 11275615 TTGAATGA 1 TTGAATGA 11275623 CCATCTATTG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38 Consensus pattern (8 bp): TTGAATGA Left flanking sequence: Indices 11275107 -- 11275606 TCAAGGTGGAGCACATGCACATAAAGCACAATATGTGAGATTATCATATGATTCTGAACCATTGG ATGTCATGTATTTGATGGAAAAAGTTTGGGGATTGGAAGCCCCAAGACTTGTTATTACAGTTCAT GGAGGAATGAGCAATTTTGAGTGGGTTTCTTGGCAGAAAATGTTGTTCAGATTGCCAGGACTAGT CCGCATTTATTCAAAAAGTTTTTTCGAGAATAAATTTCGATGGTAGTCTTTTTTGATAAATTTTT TAGCTCTAAATAGATATTATACGATTTCAAAACAGTGAGGATTATCATAAAGATATGGAACTGAA TTTGAAACTTTGTTGCAACTATTAACAACACATTGAAACAGTAGAATTTTTTTAAATTTAAGTTT TTATAAAATCCAAATTTGAGCAATCAGAAACTAACTCTCATTTCAACAAAAATCTGCTGTTTCAT TGTGTTATTATTAACTGCAAAATGTTTCACAAATTAATTTTATTT Right flanking sequence: Indices 11275623 -- 11276122 CCATCTATTGAAATTCGAAAATTTGATAGACTAGAAGAGCGTCTTGGTCGACTTTTTCGAAAAGG AATGCTCAAAGCTGCTCAAACAACGGGAGCATGGATTATTACAAGTGGGCTTGACAGTGGAGTCG TTCGGCACGTGGCAAAAGCGTTAGATGAAGCTGGAATTTCAGCCAGGATGAGATCACAAATTGTA ACGATTGGAATTGCTCCGTGGGGAGTTATCAAGAGAAAAGAGAGGCTTGTAAGATTTAGACATTT TAGAGATTAAAATCTTTATTTGCTGCAAAAATTTTCAGATAAGACAAAATGAGCATGTCTATTAT GATGTTCACTCGTTGTCTGTAAATGCAAATGTTGGAATTTTGAATGATCGGCACTCATACTTTCT GTTAGCAGACAATGGAACTGTTGGACGGTTCGGAGCAGATCTCCATCTTCGTCAAAATCTGGAAA ACCACATTGCGACGTTTGGTTGTAATGGTCGAAAAGTTCCAGTTG Found at i:11275886 original size:9 final size:9 Alignment explanation
Indices: 11275872--11275890 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 11275862 GCTTGTAAGA 11275872 TTTAGACAT 1 TTTAGACAT * 11275881 TTTAGAGAT 1 TTTAGACAT 11275890 T 1 T 11275891 AAAATCTTTA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.32, C:0.05, G:0.16, T:0.47 Consensus pattern (9 bp): TTTAGACAT Left flanking sequence: Indices 11275372 -- 11275871 CTAAATAGATATTATACGATTTCAAAACAGTGAGGATTATCATAAAGATATGGAACTGAATTTGA AACTTTGTTGCAACTATTAACAACACATTGAAACAGTAGAATTTTTTTAAATTTAAGTTTTTATA AAATCCAAATTTGAGCAATCAGAAACTAACTCTCATTTCAACAAAAATCTGCTGTTTCATTGTGT TATTATTAACTGCAAAATGTTTCACAAATTAATTTTATTTTTGAATGATTGAATGACCATCTATT GAAATTCGAAAATTTGATAGACTAGAAGAGCGTCTTGGTCGACTTTTTCGAAAAGGAATGCTCAA AGCTGCTCAAACAACGGGAGCATGGATTATTACAAGTGGGCTTGACAGTGGAGTCGTTCGGCACG TGGCAAAAGCGTTAGATGAAGCTGGAATTTCAGCCAGGATGAGATCACAAATTGTAACGATTGGA ATTGCTCCGTGGGGAGTTATCAAGAGAAAAGAGAGGCTTGTAAGA Right flanking sequence: Indices 11275891 -- 11276390 AAAATCTTTATTTGCTGCAAAAATTTTCAGATAAGACAAAATGAGCATGTCTATTATGATGTTCA CTCGTTGTCTGTAAATGCAAATGTTGGAATTTTGAATGATCGGCACTCATACTTTCTGTTAGCAG ACAATGGAACTGTTGGACGGTTCGGAGCAGATCTCCATCTTCGTCAAAATCTGGAAAACCACATT GCGACGTTTGGTTGTAATGGTCGAAAAGTTCCAGTTGTGTGTACATTATTAGAAGGAGGAATCAG TTCAATTAATGCAATTCATGATTATGTTACTATGTAAGTTTGGGTTTTCATTTTTCAGATCAAAA GTCGATTATGATTTTCTAGGAAACCTGATATTCCTGCTATTGTCTGTGATGGTAGTGGAAGAGCT GCAGATATAATTTCATTTGCTGCCAGATATATCAACTCTGATGGGTAATTTAACCCAGTTCACCT GAAACCATGAACCTTATTGTTTCAGAACGTTCGCAGCGGAAGTCG Found at i:11278057 original size:7 final size:7 Alignment explanation
Indices: 11278042--11278058 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 11278032 TTGAAATTTT * 11278042 AATTTCA 1 AATTGCA 11278049 AATTGCA 1 AATTGCA 11278056 AAT 1 AAT 11278059 CATGAAAAGT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.47, C:0.12, G:0.06, T:0.35 Consensus pattern (7 bp): AATTGCA Left flanking sequence: Indices 11277542 -- 11278041 AGTAGGCATGGAATGGCTGAATGTATGTGGGTTCATGGAGAAGATGCTATGGCAAAGTGTCTCTT AGCTATCAGGTAAGATTGTTCACTTTGAAAAATTAATTTGATGAATTGAAGATTGTACAAAGCAA CAGCGAAAATTGCCGAAGATGAATATCTTGATGTGGAAGAAGCGAAACGACTTTTTGATAATGCT GTGTAAGTGTTTTAGATGTTCTGCAGTAATTGATTCTTTACAGAAAATGTCGAGAAGATGCTATT GAGCTGCTCGATCAATGTTACAGAGCAGATCATGATCGGACGCTGAGACTTTTACGAATGGAACT TCCACATTGGGGAAATAATAACTGTTTGTCATTGGCAGTATTAGCCAACACAAAAACGTTTCTAG CACATCCATGGTGAGTCATCTGCAGTTAACGATATTTCCGGTTTGTCAATCATCGAAATTGTTTT GGCGAGTTGGTGTTTTGCAATTTTTCTTGGAAGTTTTGAAATTTT Right flanking sequence: Indices 11278059 -- 11278558 CATGAAAAGTAATAAAATCCCCCCTTTAATCCTTTAAAAAAGAATGTGGGGAAACTTTTAGAAAT AAACAGTTGTGAGTGTATTTTAAATAAAAAGCCTTAGAAGTTTTATACGAATGACGAATTGCCGC TCATTTTTTAAAATTTCATTTAAAAAAATTTCAGTTGTCAAATCCTACTTGCTGAACTATGGCAC GGCTCTCTTAAAGTCAGGTCGGGATCAAATGTTCGTGTTTTAACGGCTCTCATCTGTCCACCTGC AATCCTTTTTATGGCTTATAAACCAAAACATTCAAAAACAGCTCGTTTATTGTCTGAAGAGACTC CAGAACAGTTACCGTATCCCCGTGAAAGTATTACAAGTACAACTTCAAATAGATATCGATACTCA AAAGGACCTGAAGAACAGAAAGAAACTTTACTAGAAAAAGGAAGTTATACAAAGAAAGTTACAAT TATCTCATCGAGAAAGAATTCTGGAGTTGCAAGTGTATATGGATC Found at i:11279765 original size:10 final size:10 Alignment explanation
Indices: 11279750--11279769 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 11279740 ATTCATAAAA * 11279750 ATTTCTGGAG 1 ATTTCTAGAG 11279760 ATTTCTAGAG 1 ATTTCTAGAG 11279770 GAAACTGGGT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.25, C:0.10, G:0.25, T:0.40 Consensus pattern (10 bp): ATTTCTAGAG Left flanking sequence: Indices 11279250 -- 11279749 AACTTTTAGCTCATTTTTCAAATTTTCAACAGTTTGCTGAAAACCGATAAAGTTGCAAACTATAC GAATTTAACAAAATCTCGAAGATGGTCAAATTTGGCTAGGACAAAAATTTAATATTTTAAATTTC TACCGTTTCAAATTTTGTTTAAAACCTAACAGAAATAATTGAATTTTAACCACATTGAGGAGTGG AGACTGTCAAAAACAATTAAATTCGTGAGTTTAAAAAAATTGCAGCTTTTACTGTTTCAAAGTGC ATTTATATACTAAATTATAAAAAGTCTGTTTCACTTCCAAAGCCATTAAAACGATAGTTGTAGAA AAAAGCAAAATGTTTAAAATCCAACAAAAAAACTTTTTTTTTTTGGGAAAAAGTCGTAAAAAAAG TTGACCGTGTGGGAGAGTTGAACTAAAACAAGGGTGCGCGCTAGTTTTTTTTGTATATTTTTTGA AAAATATAGCCACTAAAGTACTGTTTTATTAACTCATTCATAAAA Right flanking sequence: Indices 11279770 -- 11280269 GAAACTGGGTATTATTACAGATTTTCCATGAAATTTTTCGTCCAAATAATTGTTGATAAAAAAGA GATTGTTCGCCGTTTTTACGCAAGTTTTGAAACTTTTTTATTAGTCTCTAATGATAACTTAAGAC GATCAGAATTTTATAGTTTTGTAGCAAATTAAAAACACCCAGACACCCAAAGACTTCTTAATACA TGGAGATTTTCCCATTTCTAAAATGGAACAATTCAGTTGTCTCGAACCTAAAAATTACAGATATT TGAGTATCTGTCTGTCCATCCATTACTTGGTCCTTATATTCAAATGGCTGCAAAAATGGTATGGT CAATGTGCTACATTTGTGTACTTCTTCTTGTTCCACTCATGGCTTTTGGTGTGAATCGACAAGCA TTAACTGAACCAAATGTAAAGGATTGGCATTGGTTACTTGTCAGAAATATCTTCTATAAACCATA TTTCATGTTATACGGTGAAGTGTACGCAGGAGAAATTGATACATG Found at i:11280422 original size:9 final size:9 Alignment explanation
Indices: 11280404--11280422 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 11280394 ATAGCGACTC 11280404 AAAAAAATT 1 AAAAAAATT * 11280413 AAATAAATT 1 AAAAAAATT 11280422 A 1 A 11280423 TTCAGTAACA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26 Consensus pattern (9 bp): AAAAAAATT Left flanking sequence: Indices 11279904 -- 11280403 AGAATTTTATAGTTTTGTAGCAAATTAAAAACACCCAGACACCCAAAGACTTCTTAATACATGGA GATTTTCCCATTTCTAAAATGGAACAATTCAGTTGTCTCGAACCTAAAAATTACAGATATTTGAG TATCTGTCTGTCCATCCATTACTTGGTCCTTATATTCAAATGGCTGCAAAAATGGTATGGTCAAT GTGCTACATTTGTGTACTTCTTCTTGTTCCACTCATGGCTTTTGGTGTGAATCGACAAGCATTAA CTGAACCAAATGTAAAGGATTGGCATTGGTTACTTGTCAGAAATATCTTCTATAAACCATATTTC ATGTTATACGGTGAAGTGTACGCAGGAGAAATTGATACATGTGGAGATGAAGGAATTCGTTGTTT TCCTGGATATTTTATTCCACCTCTTCTGATGGTCATTTTCCTTCTTGTTGCAAATATTCTGCTTC TCAATTTACTCATTGCAATTTTCAAGTAAGTGATTATAGCGACTC Right flanking sequence: Indices 11280423 -- 11280922 TTCAGTAACATTTATAATGATTCAATCGAAAAATCGAAAGAAATTTGGTTGTTCCAGCGATATCA GCAACTTATGGAGTAAGTTATTCTGTTTTTTTGTCTTTATGTAAATTTAATAATTTCAGATACCA TGACAGTCCATTCCTTCCACCACCATTCAGTATTTTTGCTCATGTTTATCATTTCATAGACTATC TCTACAATGTAAGACTTTTTTTTAATGGCATAAAATTCAAAATGGAAGTTTAAATTTTGATACAT TATTTGGCTCCCAGCGAACTGGCTCTAGTTTTACGAGTTTTTTTTTTAAATATAAAGTTATCTAA TTTTAAAATGTGATATTGAAAAAATACTAATTTTCAGCTCCGAAGGCCCGACACAAAACGTTTTC GATCTGAACATTCTATCAGTAAGCTTTAATTTTTACTAAATGTGCGTAGTTTACTATCTGTTTTA TTCAGAATTAAGTGTAACTGAAGACGAAATGAAACGGATACAAGA Found at i:11280459 original size:8 final size:8 Alignment explanation
Indices: 11280446--11280461 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 11280436 ATAATGATTC 11280446 AATCGAAA 1 AATCGAAA 11280454 AATCGAAA 1 AATCGAAA 11280462 GAAATTTGGT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.12, G:0.12, T:0.12 Consensus pattern (8 bp): AATCGAAA Left flanking sequence: Indices 11279946 -- 11280445 CCAAAGACTTCTTAATACATGGAGATTTTCCCATTTCTAAAATGGAACAATTCAGTTGTCTCGAA CCTAAAAATTACAGATATTTGAGTATCTGTCTGTCCATCCATTACTTGGTCCTTATATTCAAATG GCTGCAAAAATGGTATGGTCAATGTGCTACATTTGTGTACTTCTTCTTGTTCCACTCATGGCTTT TGGTGTGAATCGACAAGCATTAACTGAACCAAATGTAAAGGATTGGCATTGGTTACTTGTCAGAA ATATCTTCTATAAACCATATTTCATGTTATACGGTGAAGTGTACGCAGGAGAAATTGATACATGT GGAGATGAAGGAATTCGTTGTTTTCCTGGATATTTTATTCCACCTCTTCTGATGGTCATTTTCCT TCTTGTTGCAAATATTCTGCTTCTCAATTTACTCATTGCAATTTTCAAGTAAGTGATTATAGCGA CTCAAAAAAATTAAATAAATTATTCAGTAACATTTATAATGATTC Right flanking sequence: Indices 11280462 -- 11280961 GAAATTTGGTTGTTCCAGCGATATCAGCAACTTATGGAGTAAGTTATTCTGTTTTTTTGTCTTTA TGTAAATTTAATAATTTCAGATACCATGACAGTCCATTCCTTCCACCACCATTCAGTATTTTTGC TCATGTTTATCATTTCATAGACTATCTCTACAATGTAAGACTTTTTTTTAATGGCATAAAATTCA AAATGGAAGTTTAAATTTTGATACATTATTTGGCTCCCAGCGAACTGGCTCTAGTTTTACGAGTT TTTTTTTTAAATATAAAGTTATCTAATTTTAAAATGTGATATTGAAAAAATACTAATTTTCAGCT CCGAAGGCCCGACACAAAACGTTTTCGATCTGAACATTCTATCAGTAAGCTTTAATTTTTACTAA ATGTGCGTAGTTTACTATCTGTTTTATTCAGAATTAAGTGTAACTGAAGACGAAATGAAACGGAT ACAAGATTTTGAGGAAGATTGTATTGACACATTAACAAGGATACG Found at i:11281390 original size:9 final size:9 Alignment explanation
Indices: 11281376--11281393 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 11281366 AAAATCACGT 11281376 AAGTTTTTG 1 AAGTTTTTG 11281385 AAGTTTTTG 1 AAGTTTTTG 11281394 TCCAATTTAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.22, C:0.00, G:0.22, T:0.56 Consensus pattern (9 bp): AAGTTTTTG Left flanking sequence: Indices 11280876 -- 11281375 TATTCAGAATTAAGTGTAACTGAAGACGAAATGAAACGGATACAAGATTTTGAGGAAGATTGTAT TGACACATTAACAAGGATACGAAAACTTAAACTGAATACCAAAGAACCTTTGAGTGTAACTGATT TGTAAGTGCTCTTTCCGTTTAAATATTTTAAAACAATTCACAAATTCAAAAGTTCATTCCAGAAC TGAATTGACATGCCAACGGGTTCATGATCTAATGCAGGAAAATTTCCTTCTCAAGGTATTACTTA TCTTTTTTTAATAGAAAATTTCAAAAAAAAGTTGTACTTTCAGAGTCGTGTATATGATATTGAGA CAAAAATTGATCACATTTCAAATTCTAGCGATGAAGTTGTGCAGATTCTCAAAAATAAGGTAGGA TCATTTGATAAAGCCAAAACATTAATGTCGATTTCAGAAGTTATCGCAGAATTTCGCAGCGTCAA GTTTATCACTTCCAGATACTTCGATTGAAGTTCCAAAAATCACGT Right flanking sequence: Indices 11281394 -- 11281893 TCCAATTTAATTTATAACTAAAACATTTTAGAAAAACCCTGATCGATTGTCATTTGTCTCCAGTG TCAATTGAAGATCGTCTCGCTACTCGATCACCACTTCTGGCAAATCTTCAAAGAGATCATACTCT TCGTAAATATGATGATGTAATAATAAGTGTTTTTCTTTCAATCCGAACTTTAAATACTTAGGCAA ACTTCCAACCTGGGAAACTTCAACGGCGAGCACGTCTTCATTCGAGTTCGTGTTCTATTTCACAA GACATGAAGGAAATGAAAACGTTTGTTGATTTTAATGTTAGAAAAAAATTTACAAATTATTTCAG AAGTATGAGTTCAAGAAACTTGAAAAGGGAGGATTCTGGAGAAATAACTACGTCATCTCATGGAG GTTATGATTCGGATGTTTCTGGTCCCGATTAGTCTAAATTCTGGAAAAAGAGTATAACTGGTTTT AGATGTGTAAATATTATATAGTTTTCGAATTGAATCGCCTAGGTA Found at i:11282052 original size:9 final size:9 Alignment explanation
Indices: 11282038--11282055 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 11282028 AAGGAAATTC 11282038 CTCTCTACA 1 CTCTCTACA 11282047 CTCTCTACA 1 CTCTCTACA 11282056 TGCAATATCT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.22, C:0.44, G:0.00, T:0.33 Consensus pattern (9 bp): CTCTCTACA Left flanking sequence: Indices 11281538 -- 11282037 ATGTAATAATAAGTGTTTTTCTTTCAATCCGAACTTTAAATACTTAGGCAAACTTCCAACCTGGG AAACTTCAACGGCGAGCACGTCTTCATTCGAGTTCGTGTTCTATTTCACAAGACATGAAGGAAAT GAAAACGTTTGTTGATTTTAATGTTAGAAAAAAATTTACAAATTATTTCAGAAGTATGAGTTCAA GAAACTTGAAAAGGGAGGATTCTGGAGAAATAACTACGTCATCTCATGGAGGTTATGATTCGGAT GTTTCTGGTCCCGATTAGTCTAAATTCTGGAAAAAGAGTATAACTGGTTTTAGATGTGTAAATAT TATATAGTTTTCGAATTGAATCGCCTAGGTATTGCTTTTTTGGTAATAGTTTGTTTTGCAAAAAC TATTGCGTCGAATAAAAAAGTTTAATTTGATAATTATTTTTTTTGCTAGTTAATTTTCCCAAATT AATCGGTATCATTTTTACTATTTCAAAACTAAACCAAGGAAATTC Right flanking sequence: Indices 11282056 -- 11282555 TGCAATATCTATTCAAATGAGTGTGAACACAAATAATCAAGAATCTCTTTTTCACTCGCATCTCA CCAATTTCTGATACCTTTTGCGAGGCGGTTTCTCTGCTGGCTGCACACACAAATACAAATACACA AATACATACAAACGTGGTGTCCTTTATTCATGCAAATGCGATCGTCAAACAACAATTTTATGAAT GGAGAGCGACAGAAATGAAGGAGGACCAGGTGTTAAGACTGTGCTAAGCACAAAACAAGTCACCG AACGATAGACAGAAATAAAAGAAAAAAAAAAGAAAAATTGAACATTTGAAAAGGCCGATCATTTT TCAGTGGAACAAAAAGCGAGCAAAAACTTACCTTATTTAGGGTTGTCACCAGCCACAAAAGCAAA TAAGAAAAAAGTTCCTGTTGCTGCGCTGGATTCATTGTGAACCGATTGATTGCCAGGGTTGGACC CCATCCGAATCATCTAAAAATATTCAGGTTTCGAGCTTTTCACAA Found at i:11283012 original size:7 final size:7 Alignment explanation
Indices: 11283000--11283014 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 11282990 GGTGGAACTA 11283000 TCGAATT 1 TCGAATT 11283007 TCGAATT 1 TCGAATT 11283014 T 1 T 11283015 TAAAAAACTA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.27, C:0.13, G:0.13, T:0.47 Consensus pattern (7 bp): TCGAATT Left flanking sequence: Indices 11282500 -- 11282999 AGGGTTGGACCCCATCCGAATCATCTAAAAATATTCAGGTTTCGAGCTTTTCACAACCTAATTGC TTTAGCATCGCATTTTATGTCAAATTTTATTCAAAAAGCTTTGAAAGCAGATAAAAATGTTAAAA ATTTTTGTTAAAAATAATTATATTCAAATTAATTAAAATTGTTCTACTGATAAAGACTTTCTCGG CATTTGGAGGCAACTTCCTGCCAAATTATGGCAACTTCCTGCCAAGTTTTGCTTGTTTCCAACTT CCTGCCATATTTTGCCAACTTCCTGCCAAATTTTGGCAACATCCTGCCAGCATGTAGCATGCATG GCTTTGGCAACAGTCTGCCAACAGTCTGCCAAACTTCGGCATCAGCTTGCCAACAGCCTGCCAAA CTTTTTGGCAACATTTACGGTAAACAAGACGCACTGGCGTAATTTCGGAGCATCGGTGCTTTACA GCCGAACTTCAAAATTGAATTTATTCAAACTTTGCGGTGGAACTA Right flanking sequence: Indices 11283015 -- 11283514 TAAAAAACTAACAGTGATAGAAAAATTAGTAGATTATCATAAAATGAAAGCAAAGTGGGAATAAG AACGCATACTACACGAAAAACGAAGTAGGATAACTTCATGTCGTCGCGGCTTCTGAATTAATGTT GTAAAACATGTTGTTAAGAAAACCCGACTTGATAGAACGAGCTATGCGAAATTGTTTATTCTTTG AGAACAGTTACATCAACTTGCTTACAATAGTCCTTTACATCACCATGTTCTAGAATTACATGTTG GGCATTTCAGAGCTACTTATCTGTGTTTACCTCCTTGAAACTATTTTCTTCAACATTTTTTTACA AGTTTCCATTGGATTTCATATTTGAACAACTCTATTCTACTTTATCTTGCGCGCGGGCATAGCTT AGAGGTTAAGGAATTGGGCTGACAGTCACAAGGAGAAGGTTCGGGATCTAGTAGGGCAGAAAAAG GGAAACATGACAGTGCAAGTTGATATCCAGCCGATTGGACTAATA Found at i:11284345 original size:10 final size:8 Alignment explanation
Indices: 11284322--11284337 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 11284312 GAGAGATCCA 11284322 GAGAGAGT 1 GAGAGAGT 11284330 GAGAGAGT 1 GAGAGAGT 11284338 AGAAGAGATG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.00, G:0.50, T:0.12 Consensus pattern (8 bp): GAGAGAGT Left flanking sequence: Indices 11283822 -- 11284321 TCTGAATTAAATAATTTTGTAGAGGAGAATTTATTCAAATCAGACATCAGAAAAACCAAAAAAAA CTTCTTTTTTTTCAAAGTGAATACAGTAACCTTGTAGACATTCTACTCTATCATTCAGTACTAGT AAAGCTTCCTGCGTTATTTATTTTGGAGCCGAATGAACTTTTTAGTCACTTTTAGTACATCATCA TCTGACATGAATTGTCAACTATATCAACTGTTTTGGTATTTACCACGTGTCAACTTAACCAGATC CCTGATTTCATGATCTCTGTGTCTCTCATCTCTATACACTATTTCCATTTATATTTGCTTATTGG TGATTGTTGCCAGCCGTCTCTACCTTCAGGGCGGTGTGAAAGAAAGGAAGTTAGAGAGTGTGGAG ATCAGAGAGCATCCAAAGATAGAGAGATGAAAACTGTATACAGGATGGATGGGTTATTTGCTCTC TGTCCGGGGAGGTACGTGCTGATAATGGAACAAGTGAGAGATCCA Right flanking sequence: Indices 11284338 -- 11284837 AGAAGAGATGCAGAGAATTTTTGTTATCAGACTGAAATATCAATGTGTGGGACACCCCTTGTCCA AATGAAAAGTTTTCTCTTTTTGAGTCATCTCCAGTTTTTGTATTGCAAAGTGTTCCATTTTGTTT GATATCAGACGTTAAGTGACAGGTACCAACTATGTAGATTCATATCATCATTTGAATATTTGTTT ATTTGATTCAATTTCTTCTAGCGTCTCTTAATTACTACTTCCTTGTTTTTATCGAATTCTTACTG TTTCCTGGAAAAAATCCGAAATTTGTTGTATTTGAAAATCGGAATGTGACACAATATTTAAAAAT CGTTTTTAAACACATTCTGAATATTTTGAAATAAACGACCCAAATATTTACTTTTTTGAGTCATT TTAAAAATATTGTTTTGCATTCCTGATGCATAACAATTTGAACTTAGATATTTTGTTAGATCAAA ATTATTTTGATACATTTTACCTTTTTTCATTCTAGGTGTTGTGTT Found at i:11285135 original size:7 final size:7 Alignment explanation
Indices: 11285119--11285136 Score: 29 Period size: 7 Copynumber: 2.6 Consensus size: 7 11285109 TTGAAACGAA * 11285119 AAAATTC 1 AAAATGC 11285126 AAAATGC 1 AAAATGC 11285133 AAAA 1 AAAA 11285137 CTTTACACTG Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.67, C:0.11, G:0.06, T:0.17 Consensus pattern (7 bp): AAAATGC Left flanking sequence: Indices 11284619 -- 11285118 TTTGTTGTATTTGAAAATCGGAATGTGACACAATATTTAAAAATCGTTTTTAAACACATTCTGAA TATTTTGAAATAAACGACCCAAATATTTACTTTTTTGAGTCATTTTAAAAATATTGTTTTGCATT CCTGATGCATAACAATTTGAACTTAGATATTTTGTTAGATCAAAATTATTTTGATACATTTTACC TTTTTTCATTCTAGGTGTTGTGTTTTCTAATTTTCATGAAACCATTGGCATTTTTTTCATTGAAA TATTTATAACCTAAAAGGAATTTGAATAAACTATAAATAATTCCACCTGTTGAGCTTACTATCTA TATAAATACATTGCCGCCAATAAGGCAAGACTTGGGCAAAAGCTGGGCAAAACTTATGTGAGAGA TTTTGAGTTAAAATTGTCAAAGTTTGATGAAATTTGGGCAATCTTTGTGTTGGAAGTTGCCTAAA AATGCCTAGTATTTTCAAAATGCGCGTGAGATTAATTGAAACGAA Right flanking sequence: Indices 11285137 -- 11285636 CTTTACACTGTGTTAATCCTCAAACGAGTGCCTAAATAGGCGTAGACATGAAATCTACATCCAAC TGCCTGAAACCTTATCATTTGCTACTTTTCTTGGTTGCACTTGAGTATTTTATGTGTTTCGGGAG GTACTCGGCTGAACCTGTCTTATTTTAGAAACTTTGGTCTATATCAGTAAAAACGATTAATTCAG AAATTTATATCAACTACTTAGAAGCACTGACATATTTTTTCGAAATATTGCGAAATTTGGTTAGC TCATCGATCCTCCCTTTGACTAGGTTCCCATGATTACCATTCCACCGAAAAAAAAAACGGAATAC TGTCCTTCACACCTCTCTCTTTTTTTCTTGTCCCGTGCACTATCAACCATAAAAAGCTGTTCCTT TTCCTGCTTTTCATACTTTTTTCGTTCCGATCATGACTCATCCTCTCCTTCTTTCTTCGTCTTTC CATCACTCTTCTACACATTTGTACATCGTTTAGTAGTACTGTTTT Found at i:11285655 original size:7 final size:7 Alignment explanation
Indices: 11285640--11285656 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 11285630 CTGTTTTTTT 11285640 TTTGAAA 1 TTTGAAA * 11285647 TTTGGAA 1 TTTGAAA 11285654 TTT 1 TTT 11285657 ATAAAAATAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.29, C:0.00, G:0.18, T:0.53 Consensus pattern (7 bp): TTTGAAA Left flanking sequence: Indices 11285140 -- 11285639 TACACTGTGTTAATCCTCAAACGAGTGCCTAAATAGGCGTAGACATGAAATCTACATCCAACTGC CTGAAACCTTATCATTTGCTACTTTTCTTGGTTGCACTTGAGTATTTTATGTGTTTCGGGAGGTA CTCGGCTGAACCTGTCTTATTTTAGAAACTTTGGTCTATATCAGTAAAAACGATTAATTCAGAAA TTTATATCAACTACTTAGAAGCACTGACATATTTTTTCGAAATATTGCGAAATTTGGTTAGCTCA TCGATCCTCCCTTTGACTAGGTTCCCATGATTACCATTCCACCGAAAAAAAAAACGGAATACTGT CCTTCACACCTCTCTCTTTTTTTCTTGTCCCGTGCACTATCAACCATAAAAAGCTGTTCCTTTTC CTGCTTTTCATACTTTTTTCGTTCCGATCATGACTCATCCTCTCCTTCTTTCTTCGTCTTTCCAT CACTCTTCTACACATTTGTACATCGTTTAGTAGTACTGTTTTTTT Right flanking sequence: Indices 11285657 -- 11286156 ATAAAAATAATTATACAATGTTTCTTGAAGTTAAAATATTACCCTTCTCTAAGTTCTAGAAAAAA AGAAGAAAAAAAGAAAGAAAAAAATTATAAATTATTTTATCGCTTCATAAAATTTTGTATTTCAT TTTTGTTTTAATTGTAAACATGACGAAAAGATTGAACAATAAATAGTAGAATACTTTTGAAAGTA TGCATAACAATTTGGGTACAAGAAGTTTAAGAACCAAGTTTTATACGTTCCAATATTTGTTTGGT GAAGTTTGAATTATATTACTTCTTTTAATAAAAACTAAACATTTGTGGGGAGTCTTTTTCTAAAT TATTTTACCACAAATCATTGTAATAACGTATTCCGGGTATTCAGTTTTCGACAGTGTAGACTTCA ATGAGAAATAACATAGTCTTTAGAAATGAGAAAAGCGGATTACTATTCATTTTCATTTTCAAAAT ACGATTATGAATAAGTGATACTCTCTTTTTTTGGTATTGCTCCGT Found at i:11285755 original size:7 final size:7 Alignment explanation
Indices: 11285743--11285756 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11285733 AGAAAGAAAA 11285743 AAATTAT 1 AAATTAT 11285750 AAATTAT 1 AAATTAT 11285757 TTTATCGCTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43 Consensus pattern (7 bp): AAATTAT Left flanking sequence: Indices 11285243 -- 11285742 TGAGTATTTTATGTGTTTCGGGAGGTACTCGGCTGAACCTGTCTTATTTTAGAAACTTTGGTCTA TATCAGTAAAAACGATTAATTCAGAAATTTATATCAACTACTTAGAAGCACTGACATATTTTTTC GAAATATTGCGAAATTTGGTTAGCTCATCGATCCTCCCTTTGACTAGGTTCCCATGATTACCATT CCACCGAAAAAAAAAACGGAATACTGTCCTTCACACCTCTCTCTTTTTTTCTTGTCCCGTGCACT ATCAACCATAAAAAGCTGTTCCTTTTCCTGCTTTTCATACTTTTTTCGTTCCGATCATGACTCAT CCTCTCCTTCTTTCTTCGTCTTTCCATCACTCTTCTACACATTTGTACATCGTTTAGTAGTACTG TTTTTTTTTTGAAATTTGGAATTTATAAAAATAATTATACAATGTTTCTTGAAGTTAAAATATTA CCCTTCTCTAAGTTCTAGAAAAAAAGAAGAAAAAAAGAAAGAAAA Right flanking sequence: Indices 11285757 -- 11286256 TTTATCGCTTCATAAAATTTTGTATTTCATTTTTGTTTTAATTGTAAACATGACGAAAAGATTGA ACAATAAATAGTAGAATACTTTTGAAAGTATGCATAACAATTTGGGTACAAGAAGTTTAAGAACC AAGTTTTATACGTTCCAATATTTGTTTGGTGAAGTTTGAATTATATTACTTCTTTTAATAAAAAC TAAACATTTGTGGGGAGTCTTTTTCTAAATTATTTTACCACAAATCATTGTAATAACGTATTCCG GGTATTCAGTTTTCGACAGTGTAGACTTCAATGAGAAATAACATAGTCTTTAGAAATGAGAAAAG CGGATTACTATTCATTTTCATTTTCAAAATACGATTATGAATAAGTGATACTCTCTTTTTTTGGT ATTGCTCCGTAGGCGTCTTCTTTCTCATCTTTACTGTTTTGAAATGACTCATTTTCACTTGGATG ACTCAATTTTTCATTCCAACTCTCATATTTTTTCCCCTATTTCTT Found at