TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_IV Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 17493785 ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33 Found at i: i:109827 original size:9 final size:9 Alignment explanation
Indices: 109815--109839 Score: 50 Period size: 9 Copynumber: 2.8 Consensus size: 9 109805 AATTAGCCGA 109815 TCGGCTAAT 1 TCGGCTAAT 109824 TCGGCTAAT 1 TCGGCTAAT 109833 TCGGCTA 1 TCGGCTA 109840 TTATCCGCAC Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 16 1.00 ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32 Consensus pattern (9 bp): TCGGCTAAT Left flanking sequence: Indices 109315 -- 109814 ACGAGGGTATGAAGATTTACTCAAAGGATTCAACCAGTAATCTCTGGGAAAAATTGATTCTACTG CAGTAGAAAGATATCGGGTGACCTCCATTTTCACTGTTAAACTTTGATCAGTTAACGCTATATGC TTTCCACGTGACTTGATCTTCTCCTGCAAATCAATCCATTAAATTCAATTTTTTCCAAATTTTAT TTACCTGAATGTAAAGCTCAAAGTCCGTTTTCTGAATTTTCGCAACAGGTTCGGTTACTTCTGAT GAATCACCAAAGTCATCATATTCAGAATCTACGTTGCTGTATGGCTCATCGTCTTCCTTTTCGAC GGCTCTAATAAACTCCAACACTTCATCCTGATCCGAGTAGATATCCTGAAAAAGTTGTATGATTT CACATGGTATTGTATCAACGTCATTTTTCAGTAATACCTTCCAGCGAGGATCAAGAATTGTAGAA AACTTCAAATATTTGCATTGCGAGTACTTTAGCCGAATTAGCCGA Right flanking sequence: Indices 109840 -- 110339 TTATCCGCACACCCCTGGTATATAGGCTTGTCTGGTAATCTCAGCGCCTGGGTTCGAACCCGTAT GGGGCTAAAATATTTTAACAAGTGTTTTTTGCAACTCATAAAGTTCCAGGTTCCCTAAAACCTCC TTATTTTGCACTTTTTAAATATTTTTCTTTAGAAATCCAACTCGGACGCCTCGAACTTCGACGAC GACTTCACGAACGAGAAGGCGGCGTTGACACCTGTGCACGACAAGAACCTACTGGCTTCAATCGA TCCTGAAGCATTCCTTAACTTCTCTTATACGAATCCTCACTTCTCAAAATAGTTGAAATCTCATT TAGCAGCGTTTTTCATTCGTTTTTTTTGAGTCACCACGATTTTTTGAGAAAAAAATCCGTGGATA TATCCCTGGTAAAATCCTAGGTAGTTGACGTTCACGGAATTCTTGAAATCCATGAAGACTCTTCG CTCAAAATCTACTGAAAATTTGAATTTCTGGAATTTTTGTTTTGG Found at i:111623 original size:8 final size:8 Alignment explanation
Indices: 111606--111624 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 111596 TAATTTCCAG * 111606 AAAGCCTC 1 AAACCCTC 111614 AAACCCTC 1 AAACCCTC 111622 AAA 1 AAA 111625 ATAGAGGGGG Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.47, C:0.37, G:0.05, T:0.11 Consensus pattern (8 bp): AAACCCTC Left flanking sequence: Indices 111106 -- 111605 ATGAGAACAGATAAATTAAATTGCTATTTTTTCAAATTTTGGTACTTATTACCATTAGTAAAACG CGATTTTGTTTTCCAAACCAAAATGATGATGACACATTTCTCATGATAGACTAATTTTCAGTTGT ATTAAGTGCCCCCAAATAAAACCTTTTTATTAAACTCATGCCAAAGTAAGTTGTTGGACAAGTCC ACCGAATCCTACAATGCAACAATCACTGTCTAGTAAAAAGAGTGAACCCAAAATTTGAACAGGAT TGAAACTACTGAGGTTTTACAAGAAAAAAAATTAGTGTTAAAGAAAACCAGTAAAAATTGACTAT TTTAACGATAATTGTCAAAAATTCGAGGGGGTGCTATAGAAGTTGGACGGCCGTTTTTTCAAGTT TTTGACCTAATTTCCGTAGTTTTTAAGATATTCTCACAAAAACCGAGGTGTGGCGGTTTTTTAAC ATTTGTAATCGAACTACATTCACACTTTTTCAAAATAATTTCCAG Right flanking sequence: Indices 111625 -- 112124 ATAGAGGGGGGTGCTATAGAAGTTGGACGCACTGTATTTTGTGCGCTTTTCTATGCATCTTATCG TGTATTTTTTCATTCATAAACTTATTGTACTCGTAAATAAAAAACTTTTTCAGCCCCTTGACTTG TTTCAAACCTTTTTCTTTTGTTTGAAAGCTTTGAACTTTACTTTTGAAAAAAGGAATAAGAAACT CACTGATGCTCGCCTTGAAGAAGTGCCACGCGGTAATAGTTAGTTTAGTCGATGCACCATGAATT ATAATGCAGTTGGTACAGTGGGGTTTCTAGCCTCTGAGATCAGCTCAGAGTGAATTTATTGGAAC ACGACTTATAACAATAGAAACGAATGGATCATGGGTGATAAGATGGAAAACGGGGAATTGGATGA GGGTTCAGTGGAGGAAGACGGGGGTTTGACGATAACTGTACCGTCCTCTCGGACGGGGGAGATTT TATACTCCCAGTGACGGGGCGGGGCATACAAAGAGATGGAGAGAT Found at i:112124 original size:8 final size:8 Alignment explanation
Indices: 112111--112127 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 112101 GGGCATACAA 112111 AGAGATGG 1 AGAGATGG 112119 AGAGATGG 1 AGAGATGG 112127 A 1 A 112128 AAACCAGTGA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.41, C:0.00, G:0.47, T:0.12 Consensus pattern (8 bp): AGAGATGG Left flanking sequence: Indices 111611 -- 112110 CTCAAACCCTCAAAATAGAGGGGGGTGCTATAGAAGTTGGACGCACTGTATTTTGTGCGCTTTTC TATGCATCTTATCGTGTATTTTTTCATTCATAAACTTATTGTACTCGTAAATAAAAAACTTTTTC AGCCCCTTGACTTGTTTCAAACCTTTTTCTTTTGTTTGAAAGCTTTGAACTTTACTTTTGAAAAA AGGAATAAGAAACTCACTGATGCTCGCCTTGAAGAAGTGCCACGCGGTAATAGTTAGTTTAGTCG ATGCACCATGAATTATAATGCAGTTGGTACAGTGGGGTTTCTAGCCTCTGAGATCAGCTCAGAGT GAATTTATTGGAACACGACTTATAACAATAGAAACGAATGGATCATGGGTGATAAGATGGAAAAC GGGGAATTGGATGAGGGTTCAGTGGAGGAAGACGGGGGTTTGACGATAACTGTACCGTCCTCTCG GACGGGGGAGATTTTATACTCCCAGTGACGGGGCGGGGCATACAA Right flanking sequence: Indices 112128 -- 112627 AAACCAGTGAAGAGAAATAGGGGAGAAACAACATGGTTGATTGGATTGGAAGGAATGCACTTTGT CAACTGAATCTAAGTGGGATTAAAGTGCAGATGAGCAATGGTTTAGGAATTTAGGAAAAAGGGTA CGGAATCGCGTCCAAATATTTAGATTTTATATTATGAAACAAAATAGTCCAATCAGCATCAAATT GGATGCTCAACTTTTTAACAACAATTATGTGACCCGAGAGGACTGGGATATAATATCTGGGAGCA ATAGGATGCAAGGAGATTCACATTATTGGAGTATATAATATAAAACATATCCAGACGAGCGGACA GCGTTGGCCACGTTTTCTTTCGATACATCACGTAATTTATCATCGGAGCAGCGCAGCCAGCCATC GTTGTCGAGCGATTTCTTTGTGTAGGCAACGTGATGTCCTTTGTTCGGCGAACTTCCGAGGTGAC ATACAACCGAAACCAGTGTATATCTTCTAGGAGGCGCATCGCCTC Found at i:112247 original size:8 final size:8 Alignment explanation
Indices: 112234--112249 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 112224 TGAGCAATGG 112234 TTTAGGAA 1 TTTAGGAA 112242 TTTAGGAA 1 TTTAGGAA 112250 AAAGGGTACG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38 Consensus pattern (8 bp): TTTAGGAA Left flanking sequence: Indices 111734 -- 112233 CTTTTTCAGCCCCTTGACTTGTTTCAAACCTTTTTCTTTTGTTTGAAAGCTTTGAACTTTACTTT TGAAAAAAGGAATAAGAAACTCACTGATGCTCGCCTTGAAGAAGTGCCACGCGGTAATAGTTAGT TTAGTCGATGCACCATGAATTATAATGCAGTTGGTACAGTGGGGTTTCTAGCCTCTGAGATCAGC TCAGAGTGAATTTATTGGAACACGACTTATAACAATAGAAACGAATGGATCATGGGTGATAAGAT GGAAAACGGGGAATTGGATGAGGGTTCAGTGGAGGAAGACGGGGGTTTGACGATAACTGTACCGT CCTCTCGGACGGGGGAGATTTTATACTCCCAGTGACGGGGCGGGGCATACAAAGAGATGGAGAGA TGGAAAACCAGTGAAGAGAAATAGGGGAGAAACAACATGGTTGATTGGATTGGAAGGAATGCACT TTGTCAACTGAATCTAAGTGGGATTAAAGTGCAGATGAGCAATGG Right flanking sequence: Indices 112250 -- 112749 AAAGGGTACGGAATCGCGTCCAAATATTTAGATTTTATATTATGAAACAAAATAGTCCAATCAGC ATCAAATTGGATGCTCAACTTTTTAACAACAATTATGTGACCCGAGAGGACTGGGATATAATATC TGGGAGCAATAGGATGCAAGGAGATTCACATTATTGGAGTATATAATATAAAACATATCCAGACG AGCGGACAGCGTTGGCCACGTTTTCTTTCGATACATCACGTAATTTATCATCGGAGCAGCGCAGC CAGCCATCGTTGTCGAGCGATTTCTTTGTGTAGGCAACGTGATGTCCTTTGTTCGGCGAACTTCC GAGGTGACATACAACCGAAACCAGTGTATATCTTCTAGGAGGCGCATCGCCTCTCTGAAAAAAAG TTGTAGTTTACGTAACAATCACTTTTAGTCGTACCATATTATCCTTTTCGTGCAGCTCTCCGTGC ATTAAACGCTCATTATTGTTTCCTTTTTGCGATGTCATTGTCGAC Found at i:114812 original size:9 final size:9 Alignment explanation
Indices: 114798--114816 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 114788 AGCAGGGATC 114798 CGCAGACAG 1 CGCAGACAG 114807 CGCAGACAG 1 CGCAGACAG 114816 C 1 C 114817 TCAATGGCAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.32, C:0.37, G:0.32, T:0.00 Consensus pattern (9 bp): CGCAGACAG Left flanking sequence: Indices 114298 -- 114797 TGTTGTTCTTGATATCACATGGTTGCGTTTGATTGATGTTGAGGGAGTTATCAAGGAATCGAATT TTGTACCGGACCATACGATATAGGTTCTCACAGCGAACAACCATCGGACCACATGATGACATGGC TTGCAAAGTTGAGTTATAGTAACACGAGTTCCCGGTGTTAACTAATCTGAAATTTGAATTAACAA AAAAGACTAGCAAATCTGCGATTTGCCAGGCTTCGCAGTGGGGTGTGGCGTAGATTGTAAAAGTG CAAAATTTCTAGTGCTATTCAGTATTTGAACCAAAATATAATGGTGTTTTCAAGTGTGAAAAATA ACGACAAATGCAACATTTCACTTTTTGGAAAGACGTGAATGCTCAAAACTTCTCTGCCGGGTGTC TCACTAGCGGGCGGTCGTGTGTTTTTTCCTCTCCTCTCGTCGTTGTAAATTATCGATTCGATAGT TATGACGAAGAATAAAAACCAGGCCAAAAAACGCAAGCAGGGATC Right flanking sequence: Indices 114817 -- 115316 TCAATGGCAACTAATCCGGTAGAAGAAGAAATGGTACCTCTTTCTGAGTTCCTCAAGCTCAAGGA GTCTTTCAACGCGATGAGTGCAAGAATGGACAAAATCCTGTCTCTGGTGGAATACATTATTCCAC TGAAGACCCATTCGCACTCAGAGCTTGATATTCCAATCTCTTCTGAAAGCGTCGCCAACCTTTCC GACTCATCTTCTTCGTCACTCTCTTCTCTCAACTATTCAAAACATCCTACTCGTTGAACAGTATT GCTCGTGAGCAGCAAGCAATGAAAGATAAGGAGACACGTGCAGTTCTTGAATTATTACCGGATGA CAAAGATGACAAAAACCAGGACGAGAAAACCTTGGCTATTATTAAAAGGTGGCTTCTCTGTACGA ATTCAATCCACCTATTTCAGTATTCCGTCACCAGTGCAAATCAGTAATGCGTCCCCTCAAAATCC AATTTGACACCAAAACCGACAGAAACGCGTTCATCAAAATCTACA Found at i:115151 original size:9 final size:9 Alignment explanation
Indices: 115137--115154 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 115127 ATTATTACCG 115137 GATGACAAA 1 GATGACAAA 115146 GATGACAAA 1 GATGACAAA 115155 AACCAGGACG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.56, C:0.11, G:0.22, T:0.11 Consensus pattern (9 bp): GATGACAAA Left flanking sequence: Indices 114637 -- 115136 ATTTCACTTTTTGGAAAGACGTGAATGCTCAAAACTTCTCTGCCGGGTGTCTCACTAGCGGGCGG TCGTGTGTTTTTTCCTCTCCTCTCGTCGTTGTAAATTATCGATTCGATAGTTATGACGAAGAATA AAAACCAGGCCAAAAAACGCAAGCAGGGATCCGCAGACAGCGCAGACAGCTCAATGGCAACTAAT CCGGTAGAAGAAGAAATGGTACCTCTTTCTGAGTTCCTCAAGCTCAAGGAGTCTTTCAACGCGAT GAGTGCAAGAATGGACAAAATCCTGTCTCTGGTGGAATACATTATTCCACTGAAGACCCATTCGC ACTCAGAGCTTGATATTCCAATCTCTTCTGAAAGCGTCGCCAACCTTTCCGACTCATCTTCTTCG TCACTCTCTTCTCTCAACTATTCAAAACATCCTACTCGTTGAACAGTATTGCTCGTGAGCAGCAA GCAATGAAAGATAAGGAGACACGTGCAGTTCTTGAATTATTACCG Right flanking sequence: Indices 115155 -- 115654 AACCAGGACGAGAAAACCTTGGCTATTATTAAAAGGTGGCTTCTCTGTACGAATTCAATCCACCT ATTTCAGTATTCCGTCACCAGTGCAAATCAGTAATGCGTCCCCTCAAAATCCAATTTGACACCAA AACCGACAGAAACGCGTTCATCAAAATCTACAACAAGGTCATTAAGAAAGAAGAATTTTCGGATC TCACCAGAAAACCTAGAGCCAGAAGAGACTTGACGTTTGATGAGCTGGAAACTCTGCGTGCTAGC CGGAAATTTATATACGATGAGAATGTGAAAGCGAAAGAAAGCAGAATCCGGTAACTCTTTTTTTC CCAAAAATTCCTTTAAAAATCATTCTCCCAAATGTAGTGTTCTCCCAAATATTAATATTTTTTTT GCCAATGTTCGTGGTGCTTCTAGTCTTTCCAAACTGCATATGCTATTTGACTTCTTCCTGTCTTC TAATTTTGATTGTCTCTGCCTAACCGAAACGCATTTCAACAGTAG Found at i:118226 original size:7 final size:7 Alignment explanation
Indices: 118214--118227 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 118204 CTCTAGTCAA 118214 TCCAAAG 1 TCCAAAG 118221 TCCAAAG 1 TCCAAAG 118228 GTTTCTTTTC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.29, G:0.14, T:0.14 Consensus pattern (7 bp): TCCAAAG Left flanking sequence: Indices 117714 -- 118213 GACCTCGGGCTTATCACCGACGATAAATTGTCATTCAAATCGCATATCAATAGAACCTCTTCCCT GACACTTCTTAGGGCAAAACAGATCCTAAAATCCTTCCCCTCTGGCTCCATTAAATTCTATGTGA ACCTGTTTAAAACGTATGTCTCACCAATTCTTGACTATGGGTCCCACATTTACTCCCCTCCCCCT CATTCAAAACTGTCAGGTGCATTAGAATCCGCTCTCAAATACTACTCAAGAATAATACTACAACG TAACAATATACAATACAAAGTATCGGAAACATCACATAGAAACACCTCATTAGTTTATTCACTTT CATATAAAAACCGCCTAAGCATTCTCAACATGGCCACAGCCCGCTCAACACGCTTAAAATCACAG CTTATTCTCTTGTATAAAATTATAACAAGCGCTGTACATTTCCCAGATGCAAAAAGATTTATTAT GCATGTCAGATCTCAACGTCGGCCGATGCTCCTTTCTCTAGTCAA Right flanking sequence: Indices 118228 -- 118727 GTTTCTTTTCTATTGTCGTTCCCCTCTGGAACAGTATAGTTCACAATGTAGCAACATTCCTTTCC CCCTCCCAGTTTATGAACCTCATAAACCAACAAATCTCATTCTTTTAAATTTCTCGTTGATTTAT CCTCTTCTGTCAAATAGTATTTAGTTTTTTCATACTTAAGATGGACTCTGACGGGTCTTTCTTAT TTTTATGTGTTATTCGATTCTTCCCCGTTGATCTTCTATGTACTACTTTTTGTTACTATTTATCT AATTTTCGAATAAACAAACAAACATCGAATTTTGTACCGGACCATACGATATAGGTTCTCACAGC GAACAACCATCGGACCACATGATGACATGGCTTGCAAAGTTGAGTTATAGTAACACGAGTTCGCG GTGTTAACTAATCTGAAATTTGAATTAACAAAAAAGACTAGCAAATCTGCGATTTGCCAAGCTTC GCAGTGGGGTGTGGCGTAGATTGTAAAAGTGCAAAATTTCTAGTG Found at i:120266 original size:7 final size:7 Alignment explanation
Indices: 120254--120268 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 120244 TGAATTTTTC 120254 TTGAAAT 1 TTGAAAT 120261 TTGAAAT 1 TTGAAAT 120268 T 1 T 120269 CATTGAATTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47 Consensus pattern (7 bp): TTGAAAT Left flanking sequence: Indices 119754 -- 120253 TTTCAACAAACGATTTACAAAAATCTTTTTTTCAAAGAAACGGGCAAGCGAGAAAATAAGAAATG AAAATTTCGATTTTTGACAAAAAAAAAGGTTTTCAGGATTGTTGGTTGAGGCTCACAATTTTGGT TGAGGCTCTCTATTTTGGTTGAGGCTCACAGTTTTGGTTGAGGCTCAGGATTTTTGGTTGAGGCT CTCTATTATGGTTGAGGCTCTCTATTTTGGTTGAGGCTCTCTATTTTGGTTGAGGCTCTTTATTT TGGTTGAGGCTCTTTATTTTGGTTGAGGCTCACAGTTTTGGTTGAGGCTCTCTATTTTGGTTGAG GCTCTCTATTTTGGTTGAGGCGCTCGATTTTGGTTGAGGCTCTCAGAATTTTTGGGTGAGGATTG GATAAAAAATTGAAGCGATATTCAGAAAAAAAATTGGTTTTAATTTTTTTTAAATATAAGTTTTC AATGCTAAATTTCAAATTTGTCTTTTTTTTTTATTTGAATTTTTC Right flanking sequence: Indices 120269 -- 120768 CATTGAATTTTTTTTTAATACATACATTCAGAAACATTAAAATTCAGATATTTTTTAGATTTTTC AGCCAAAAAAACTCAAATTCAAATTTAATTTATTTTTACCTCTCACAAATTTTCAACGTCGGCAT TTCGACCTCCTTCTTCACGGAAACCTTCTCTCCACTCCGAATCAAGTCAAGAATCGCCCTCGGAT GAACTTTCTCAAGATCCCGAACATATTTCCTCGCATATCCTCGATAGGCATTCGGTGCGTAGATA CATTCCGTATAGAAATATTCCAATTGATTTGTTCTCGCATACATCACAATATCCCTTTCAAAACA GTATTTCAGAGGTTTGGCACGTGGCAAATCACCTTCCTCTCCGGTGACAATATTCGTGCACCGCT CCAGCCGAGCAATATCACCACGGAGCACATTCATGAGTAAGGTCTCTGCCATATCATCTGCATTA TGTCCTGTAACAAGTTTGGTGGCTCCGATTTTAAAGGCTCCTCGA Found at i:121157 original size:8 final size:8 Alignment explanation
Indices: 121144--121163 Score: 33 Period size: 8 Copynumber: 2.5 Consensus size: 8 121134 TTTTTCAGGC 121144 AAAATCGA 1 AAAATCGA 121152 AAAATCGA 1 AAAATCGA * 121160 CAAA 1 AAAA 121164 AAAATGTTCC Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.65, C:0.15, G:0.10, T:0.10 Consensus pattern (8 bp): AAAATCGA Left flanking sequence: Indices 120644 -- 121143 TATTCGTGCACCGCTCCAGCCGAGCAATATCACCACGGAGCACATTCATGAGTAAGGTCTCTGCC ATATCATCTGCATTATGTCCTGTAACAAGTTTGGTGGCTCCGATTTTAAAGGCTCCTCGATCTAG AGCCTGTCTTCTGAATACTCCACAAAATGTGCAATTATTCTTTTTCCCGATTTTCGCCACGATAT CGTCCATAGTCCAACCGTACAGGTCACGATAGCTAAGAATTGTCAGTGGGAGCCCATATTCTACA CGATTCTTCTCCACGGCAAGCAGGGAATCGTCTCGATAGCCTTTGATGCCTTCGTCGATTGAGAG AAGCTGAAGATCGAGCCCGTAGTCGTGTCGGTCGTTGAGAGTTTTCATGACGTATGCCAGGACGG TGGAGTCTTTTCCGCCGGATGCTCCGATTGCAACACGTTCTCCTCGCTGGAATTTTATTGGAAGG GTGGCATCGAAATTTTATAAAAAAGATTATTATACTTTTTCAGGC Right flanking sequence: Indices 121164 -- 121663 AAAATGTTCCGAAAAAGCCATAAAATTTTTGGTTGAGGCTAAGGATTTTTGGTTCAGGCTCAGGA TTTTTGGTTGAGGCTCTCTGGTTTTTGGTTTTTTTTTTAAATTTTTTTCGTTAAAACTTCTTGAA CATTCACCCGAATTTCACAAGTTTTCTAAAAAGTTCTTTAAAAACTTATTCGCGGGAAAATTATT TAGATTTTATTGCTTTTTTGTTGATTTTCAACCGAAATGTCCAAGTTTTTTTTTTTGAAAATTTG ATTTAAAAAAATCATTAATAGGTGAAAATATCAAATTTCCGACATTTTCACACAGATTTTCAGTT GGATTTTTTCCAATTTCATGATCTTTTCTATCAAATCCCAGTACCTTGAACAGTTTATTGTTCAC AATCGCCTCGTGCACATCGTCCTCGAAATTCCTGCTGAAACAGGGTCCACACAGCTGTGCTCCGT CCTTGGCTTTTCGGATTTTCGCTGGATTGGAACATCCGGATCCGG Found at i:121259 original size:7 final size:7 Alignment explanation
Indices: 121247--121261 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 121237 TGAGGCTCTC 121247 TGGTTTT 1 TGGTTTT 121254 TGGTTTT 1 TGGTTTT 121261 T 1 T 121262 TTTTTAAATT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.00, C:0.00, G:0.27, T:0.73 Consensus pattern (7 bp): TGGTTTT Left flanking sequence: Indices 120747 -- 121246 TCCGATTTTAAAGGCTCCTCGATCTAGAGCCTGTCTTCTGAATACTCCACAAAATGTGCAATTAT TCTTTTTCCCGATTTTCGCCACGATATCGTCCATAGTCCAACCGTACAGGTCACGATAGCTAAGA ATTGTCAGTGGGAGCCCATATTCTACACGATTCTTCTCCACGGCAAGCAGGGAATCGTCTCGATA GCCTTTGATGCCTTCGTCGATTGAGAGAAGCTGAAGATCGAGCCCGTAGTCGTGTCGGTCGTTGA GAGTTTTCATGACGTATGCCAGGACGGTGGAGTCTTTTCCGCCGGATGCTCCGATTGCAACACGT TCTCCTCGCTGGAATTTTATTGGAAGGGTGGCATCGAAATTTTATAAAAAAGATTATTATACTTT TTCAGGCAAAATCGAAAAATCGACAAAAAAATGTTCCGAAAAAGCCATAAAATTTTTGGTTGAGG CTAAGGATTTTTGGTTCAGGCTCAGGATTTTTGGTTGAGGCTCTC Right flanking sequence: Indices 121262 -- 121761 TTTTTAAATTTTTTTCGTTAAAACTTCTTGAACATTCACCCGAATTTCACAAGTTTTCTAAAAAG TTCTTTAAAAACTTATTCGCGGGAAAATTATTTAGATTTTATTGCTTTTTTGTTGATTTTCAACC GAAATGTCCAAGTTTTTTTTTTTGAAAATTTGATTTAAAAAAATCATTAATAGGTGAAAATATCA AATTTCCGACATTTTCACACAGATTTTCAGTTGGATTTTTTCCAATTTCATGATCTTTTCTATCA AATCCCAGTACCTTGAACAGTTTATTGTTCACAATCGCCTCGTGCACATCGTCCTCGAAATTCCT GCTGAAACAGGGTCCACACAGCTGTGCTCCGTCCTTGGCTTTTCGGATTTTCGCTGGATTGGAAC ATCCGGATCCGGATTGGCACGGTGGGGGTCCTCGGCGTTTTTCCATCTGAATTACTCTGAAAATT CATTATATTTTCTGAAAATTTGTTGAAAAAGAGGTATAAAAATAG Found at i:123291 original size:8 final size:8 Alignment explanation
Indices: 123278--123299 Score: 44 Period size: 8 Copynumber: 2.8 Consensus size: 8 123268 GAACGGATCG 123278 TCCTTTAA 1 TCCTTTAA 123286 TCCTTTAA 1 TCCTTTAA 123294 TCCTTT 1 TCCTTT 123300 TTTAAAGGCT Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 14 1.00 ACGTcount: A:0.18, C:0.27, G:0.00, T:0.55 Consensus pattern (8 bp): TCCTTTAA Left flanking sequence: Indices 122778 -- 123277 TGAGGCTAAAAATTTTGGTTGAGGCTAAAAATTTTGGTTGAGGCTAACAATTTTGGTTGAGGCTC TCGATGTTGGTTGAGGCTCGCGATGTTGGTTGAGGCTTTGATTTTGGTTGAGGCTCTCAGGAATT TTTGGGTGAGGCTCTCAGGATTTTGGTTGAGGCTCTCGTTTTGGGTGAGGCTCAGGATTTTGGTT GAGGCTCTAGATTTTCTTTTTTTTTTGCTCTAGATTTTTTTTTTTTTTTTGGGGGGGGGGGGGGG GGGGGGCAGATAGCTCAGTCGGTAGTGGTGGCCGCTAGCAGTCTGGAGGTCACGAGTTCAAGCCC GGCCTCACCCCCTAGGTTCACCCAGCCTCTATTGGGAAGTGGAGCAATCCACGACTGGATTATCG GCCACAGTCCCCGGCTAGGACGTGGCTTAAATTACAGCCCAGAGGGATCACCACCAGGCAGTGTA CCTGAATCCCAGATCCGCAGTGCATAGCACTTGAAGAACGGATCG Right flanking sequence: Indices 123300 -- 123799 TTTAAAGGCTAAAAATTTTGGTTGAGGCTAACAATTTTGGTTGAGGCTAACAATTTTGGTTGAGG CTAAAAATTTTGGTTGAGGCTAAAAATTTTGGTTGAGGCTAACAATTTTGGTTGAGGCTCTCGAT GTTGGTTGAGGCTCTCGATGTTGGTTGAGGCTTTAATTTTGGTTGAGGCTCTCAGGAATTTTTGG GTGAGGCTCTTAGGATTTTGGTTGAGGCTCTCGTTTTGGGTGAGGCTCAGGATTTTGGTTGAGGC TCTAGATTTTGGTTGAGGCTCACAATTTTGGGTGAGGCTCTCGATTTTCCGTTTAAATTCATTGT TTCATTCGTATTATTTATGAAAAAAAATTAAGATTTCGATTTTTCCAGATTTGAGTGAAATTTAC ATCATCCTAACCTTTGCGTAATTAGCAATCTCAACGGAACATCATCCTCATCTCGGAGCAGCTTA ACTGGCAGTCTTTCTGCTCCATAAACTCTATAGAATTTCACAGGA Found at i:124632 original size:8 final size:8 Alignment explanation
Indices: 124619--124634 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 124609 CGAAAAGCGT 124619 CCTCGTCG 1 CCTCGTCG 124627 CCTCGTCG 1 CCTCGTCG 124635 TCGTCCTGTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.00, C:0.50, G:0.25, T:0.25 Consensus pattern (8 bp): CCTCGTCG Left flanking sequence: Indices 124119 -- 124618 CAATGTTCTCTACGAAGCCGAACTCGCCGAAAGCTTTCTGAAGGATCTCCTTATCGCACCAGGAG CCGAGGCCACCGACGAAGAGCCGGCGGGAGACTTGGCTTTTACCGTAGCCGATCTTCATACGGGA ACCGCCTGCACGAATCGGGCGGTCTTGTTCTTCGGCTTTTGCTTGGATTGCTTGATCGACGGTCT GAAAGAATTTTTTAACTTATAAATGTTGAGTGAGGCTAAAAATTGGTAGAGGTTCAGGATTTTGA GTGAGGCTAAAAATTGGTTGAGGCTCAGGATTTTGAGTGAGGCTAGGGCGAGTTCTTGTTAAAAT TCTATGAAGCCGCGAAAAAAATTCGGTCACGAACCTGAAACATGACAAAAGCGTATGCGGCGTCC GTATTGATTGGCGTCTTTATATCGACTTCTTCCACTTTCCCGTGCTCCTCAAAAACGTGACGAAT CTCTCGTTCCTTCACATCCGACGGCATATTTCCGACGAAAAGCGT Right flanking sequence: Indices 124635 -- 125134 TCGTCCTGTTTTAGCCGCCACGTGGATGGTTCCTTAGTCGGGCGGCCCCGATTCCCGCTTCCACT TCCGCCTTCTCGTTTACTGTCGGCTCCGTGTTGAGCTCGATTAAATCGATCCGGAATGTATTTGC CCTCCTGATCACGTAGAATTCCAGCTGGATCACATTGAACACGCTTGCCGAGCACTGATTTTAGA CGGTCCATTAAGGTGTATCTGACCTTCCGAGCACAATCATTTCTCTCGAAATTCACGTAGGCTAG GCGTTCGTCTTCTTCCGGGTTTTTGACCACTTTTATCTGAAAAAATTGGTATAAAATTGCGGAAA TCTCAGGATTTTTTGGTTGAGGCTCAGGATTTTTTGGTTGAGGCTCTCTGGATTTTTGGTTGAGG CTTTCTGGATTTTTAGTTGAGGCTCTCTGGATTTTTGGTTGAGGCTCTCAGGATTTTTGGTTGAG GCTTTCTGGATTTTTGGGTGAGGCTCTCTGGATTTTTGGTTGAGG Found at i:126344 original size:7 final size:7 Alignment explanation
Indices: 126332--126346 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 126322 ATTGTTGACC 126332 GTACTCG 1 GTACTCG 126339 GTACTCG 1 GTACTCG 126346 G 1 G 126347 CGATGCACTG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.13, C:0.27, G:0.33, T:0.27 Consensus pattern (7 bp): GTACTCG Left flanking sequence: Indices 125832 -- 126331 CAATTTTTTCTTCAAAAAGCTCCTTACCGATAATAACTGGAAAGTCCGTTGCAATTCGGTCGGTA TTGAGGTCTACCGCGTTCTTCTGCCATTTTTCGCTGAAGAAATTCGAATTTAATTCGTTTTCGAG AAGAATCGGCATTTTTAGTTAAATTTCTTAGTGATTCAGGTGTAGAATGAAACGAATAAAAGAAG CAATAATAAGACACAGAAAAAGTAGAGAGTAAGCTAGAAATAAGATTGACTAAACACTGAGTTTT TGCTGAAAAAGCCGATTTTTCTCAAAATTACAGCTGGAATAGAACAGACAGTACAATAGAAATAG AGTTTTAATATGAATTTTAATATTAAAGAATCTGAAAATATATTTAAACACCAGAAATTTGTGTA AATCGATGAATTTGTAGAGCTCGTGAGCTAATCAATTATTTGCCAGCGATGTGTGCATTCTGACG TGACGGTGTACGTTCGCGGTGGTTGCGTACTTTAAATTGTTGACC Right flanking sequence: Indices 126347 -- 126846 CGATGCACTGCGCATTCTAGGAAATCGATTTTCTTCTATTTTTTGATTTTTAAATCGAAATTTCT AAAATAATTCATGGTTTTCTGTCAATTTCAGATTTAAAATTGACAATTTTCAATTAAAATATCAA ATTTCATTCTAAAAATCCACTAGAAACGAGGCTCCACGATTCCGGCGCTCTCTGTTTATTTTGCA CGTTTCCAAAGGGCGCTTCGAGCTTTTCCCAGTGTTTTATTGAATTTTATGTGTTCTCGTCCCAT TTTCTCAGTTAAATCATGCATTAAAATTATGAAACTGCATTGATTACCTCTTTTTTCCCGGAAAA ATCGTATTTCGTTAATTAAAAAAAGTCGATAAGGCTCAATTAAATAAATCTATTTTCAGGATGGT TGCCGCTTCTGCCACCCGTAACATGCTCCATCAATATGGCCGTCGCGCCATCGGCATCTCGTTGA TCGCCTCCGTCGGCGCCACCGCCGCCTTCTTCTTCGGATACGTTC Found at i:127457 original size:8 final size:8 Alignment explanation
Indices: 127444--127462 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 127434 AACAAGGGAT 127444 ACATGCAC 1 ACATGCAC * 127452 ACATGCCC 1 ACATGCAC 127460 ACA 1 ACA 127463 GGAGCTCGCC Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.37, C:0.42, G:0.11, T:0.11 Consensus pattern (8 bp): ACATGCAC Left flanking sequence: Indices 126944 -- 127443 GCGAATGTTTGACATCCAGAATTCGTAAAAAATATGGAATTCAGTATAAATTTGCGATCCGTGGT GCCAAAATCGAAGAAAATCGCTAATTTTTCCGGATTTTCACTTTAACAAGTCTCGAAATCAGTTT TTTTATTGGGAAATTTATCGTTTTTGCTGATATTTCACTCAGGATGACCACTAGAAGCTTGTGAA CCTCTGACACGATTTTTTGTCGATTTACGGAGCTCAATTTTATACTAAATTTTAGCTACATTTCG TCTAATTTTGCCTGATACTGGTCCAAAATGGAGAATTTCAGTTCTAATAGGAAACAAAAAATTAA AATACACACTTTTCCTCAAGGAGTACACGAGCAATTGACAAAAAATTAAAAAAAAAACAATTTAC GTTCAAAATCGTGAATTTTATGTCATTTTCCCCCTGAAAATTCAATTTTTCTTTCAGCAACTACG ATCCATACACCAGAATGAAGGAGATCTGTGCCGCGAACAAGGGAT Right flanking sequence: Indices 127463 -- 127962 GGAGCTCGCCAAGCTCTACGAGGAGAAGGGCAAGACTGTTGCCGATTTGTAGACGCCCACGCCTC GAATCTTGTGTGTGTTCTTGTACTATTTTGTTAGTCAATTTCTTATTCTCTTCGAAATGTTGCGA TATTCTTAAATAGCTTGGTTTGTTCCGAATAAAAATGTTCGTAATCCGTTTCTTCGATGAGAGCC GAGGTCTCGGTTTCTCTGCACTCTCCCCTGACAACTACAGACTCTAATTGGCACGCCGGACACCT TTTTTCTCGTCTACCATGTGTTCTGCTGCTTTTGCAAAAATATATGGATTTCTTGAGCATTTAAT CGCCGAGAAATCGATTTCCCCGTGGATTTTCACGATTTTGTGTCTGCGGAAACAATTTCCCTGGA GTTTGAATTTCGTGGAGCCAGATTCGCAAAAATTTTTAGTATCTAGCTTTTTGAACAAAGTTTTA TGATAATTTAGGGTCTCGCCACGCTGATTACGCATCAGAATACTA Found at i:129167 original size:7 final size:7 Alignment explanation
Indices: 129155--129170 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 129145 ATGCATCACA 129155 AGTTACT 1 AGTTACT 129162 AGTTACT 1 AGTTACT 129169 AG 1 AG 129171 GTAACCTACT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38 Consensus pattern (7 bp): AGTTACT Left flanking sequence: Indices 128655 -- 129154 CACCGCAAAAGAGAACAGTACCCCAAAATCAGATATCCCGCCAAAACTACAAGAAAAAATTAACT GTGTCCACCACCACCACCACCTAATTGTCTCCCGCGAATCACTTTTCTCCCCCCCCCCCCCCCCA CCTCAACCTCCTCACCGCCCGCCCGGTGGCCTCCAAAACAGTCTGCGTCTCTTCGCTCTCCACTC TCTCGTCTCGTGCCACACACCACCCCGCCACGCTCTGAAAAAAAGTTATCGAACTGAAAATCGTC ATTTTTCTATTTCTTTTCATAATTTTTCTGCCCGCCGGGGTGGGGTTTCTGACAGTTTTCCACGT GGCGGCACAGCTCAACAATAATCGATTTTTCAGTTGTTTCAAAAAACTAATTTTTTTTTCCTTGG TTTCTCTAATTCTCTCATAGCTGGTAATCTCTCGTCAGGTGTCCTCACCTAACTATTAATTATCG ATTATCTTTTTATTCGAAATTTCAACAACAAAAAAATGCATCACA Right flanking sequence: Indices 129171 -- 129670 GTAACCTACTACTTATATTTTAGATTTTTTTCAAGTTTTTTTTTATTTTTTAGTTTGAAAAACGC TTTCTTTCAAAGTTTTCTCCCTTTGAAATTTGGTTTTTGGTCCGTGTCCGAGAAGAGAAAAAACT CGGCCACCAATTTTTTTTCGCGGCCACATATTTTTCTTACGGCTGTCCGAGGCTCTAAAAGTCAA TTTTCAAATAGATATAGACTAAAAAAATCAAAACTAGAGAAAACTCGGCCACCGATTTTTTTTCA GGCCATGTGGAATTTTACACCACTCCCTTTTTTCTGAGAAATCAAGAAAACTCGGCCACCGATTT TTTGCAATTTTTTTCGGTCACCATTCCCAAATTCGCAAAATTTTCAAACGAAAATCGGCTATAAA AATCCTTTAAAAATAATTTTGGCCTAAAAAAAGAAGGTAGAGAAAACTCGGCCACTGACTTTATT TCGCGGCCACGTTTGGCGATGACATTTTTCAAAGAAATTTCACAT Found at i:129221 original size:7 final size:7 Alignment explanation
Indices: 129209--129226 Score: 29 Period size: 7 Copynumber: 2.6 Consensus size: 7 129199 TTTCAAGTTT 129209 TTTTTTA 1 TTTTTTA 129216 TTTTTTA 1 TTTTTTA * 129223 GTTT 1 TTTT 129227 GAAAAACGCT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.11, C:0.00, G:0.06, T:0.83 Consensus pattern (7 bp): TTTTTTA Left flanking sequence: Indices 128709 -- 129208 AAAAATTAACTGTGTCCACCACCACCACCACCTAATTGTCTCCCGCGAATCACTTTTCTCCCCCC CCCCCCCCCCACCTCAACCTCCTCACCGCCCGCCCGGTGGCCTCCAAAACAGTCTGCGTCTCTTC GCTCTCCACTCTCTCGTCTCGTGCCACACACCACCCCGCCACGCTCTGAAAAAAAGTTATCGAAC TGAAAATCGTCATTTTTCTATTTCTTTTCATAATTTTTCTGCCCGCCGGGGTGGGGTTTCTGACA GTTTTCCACGTGGCGGCACAGCTCAACAATAATCGATTTTTCAGTTGTTTCAAAAAACTAATTTT TTTTTCCTTGGTTTCTCTAATTCTCTCATAGCTGGTAATCTCTCGTCAGGTGTCCTCACCTAACT ATTAATTATCGATTATCTTTTTATTCGAAATTTCAACAACAAAAAAATGCATCACAAGTTACTAG TTACTAGGTAACCTACTACTTATATTTTAGATTTTTTTCAAGTTT Right flanking sequence: Indices 129227 -- 129726 GAAAAACGCTTTCTTTCAAAGTTTTCTCCCTTTGAAATTTGGTTTTTGGTCCGTGTCCGAGAAGA GAAAAAACTCGGCCACCAATTTTTTTTCGCGGCCACATATTTTTCTTACGGCTGTCCGAGGCTCT AAAAGTCAATTTTCAAATAGATATAGACTAAAAAAATCAAAACTAGAGAAAACTCGGCCACCGAT TTTTTTTCAGGCCATGTGGAATTTTACACCACTCCCTTTTTTCTGAGAAATCAAGAAAACTCGGC CACCGATTTTTTGCAATTTTTTTCGGTCACCATTCCCAAATTCGCAAAATTTTCAAACGAAAATC GGCTATAAAAATCCTTTAAAAATAATTTTGGCCTAAAAAAAGAAGGTAGAGAAAACTCGGCCACT GACTTTATTTCGCGGCCACGTTTGGCGATGACATTTTTCAAAGAAATTTCACATATTTTTTTCCG AACTTCCACAATTTTGGTCACGTGGCCTCGAATGGGGAATCCTCG Found at i:130279 original size:7 final size:7 Alignment explanation
Indices: 130267--130280 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 130257 TTCCTCGCTT 130267 CAAATGG 1 CAAATGG 130274 CAAATGG 1 CAAATGG 130281 GGTGACTTGA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.14, G:0.29, T:0.14 Consensus pattern (7 bp): CAAATGG Left flanking sequence: Indices 129767 -- 130266 AATCAAAAATAATTGGTGGCCGAGTTTTTGCTTTTGTCAAGAGGTCGTAAAATGGAAACCTGAGC CACCACTCTGTATTTTTTTTGTTTGAGAATTCCCTTCAGGTGCACTTCTACTTACATTAGTTTCA AAAAAAACCTGAAATAGAGAAAACTCGGCCACCGAATTTTTTGGTTGTCAAACTGTGGCCTAGTT CTGCTTTTGCCAAGAGGCCGTGAAATTGAAACTTAGGCCACCACACTTTAATTTTTTTTTCACAA AAACTGAGATAGAGAAAACTCGGCCACCGATTTTTTTTTCTCGGTCCCGTTTTTTGCCAAGCCCT CATTATTTTCAAAAAAAACACACACAAAATGGTGTATGGTTACTAAAAAAAAGAGGTCAGTGATC ATTAATCAGATATCAGTTTTTGGTTTTTTTTGCCATGTTTTCTCACATTTTTCGGTTGGCAGATT TTCGTGTTTTTTTCTTTCTTTTTTTGATAAATTTATTCCTCGCTT Right flanking sequence: Indices 130281 -- 130780 GGTGACTTGAACTGTGTGTACGTGCATGTGAGAGGGCAGAGACGCAGACAGTGAGGGCCCCTCGG AGCAACAGATGGAGAATTATGTCAAGTTCAGTTGTTTACACATTTTTTTGCAGAACCACTCCCTC TGTGTTCTCCATCTCTTTTTTTTCATTGTGAAAAGTGTGTGCTTCTCAGTATGAAATGAACTTTG TTCGAAAAATTTTAAAATTGTTAAATGACAAGGCTTCCACAATTAAATTTGCAATTTTTTGATAG TTTTAGTACCCACGAGAATACCGTATTTCTTCTATTAGTATGGCCTCCCTATTAGACTTGCACTC CCTATTAGTATTGCCCCTCGGAGACCTTCCTTTTCTGAATTTTTACATAAGATTCGAGCTTTTTC AGAAAAAAAAAACTAGTAAGCTGAAAGTCAGAAAAATGTTCTGAAAATTAGTATTGCACTCCCTA TTGGGCAAAAATAAAAAAAGTATTGCAAGCGGGAAGACTATCGAA Found at i:130494 original size:8 final size:9 Alignment explanation
Indices: 130481--130500 Score: 33 Period size: 8 Copynumber: 2.3 Consensus size: 9 130471 CTTTGTTCGA 130481 AAAATT-TT 1 AAAATTGTT 130489 AAAATTGTT 1 AAAATTGTT 130498 AAA 1 AAA 130501 TGACAAGGCT Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 8 6 0.55 9 5 0.45 ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40 Consensus pattern (9 bp): AAAATTGTT Left flanking sequence: Indices 129981 -- 130480 GTGAAATTGAAACTTAGGCCACCACACTTTAATTTTTTTTTCACAAAAACTGAGATAGAGAAAAC TCGGCCACCGATTTTTTTTTCTCGGTCCCGTTTTTTGCCAAGCCCTCATTATTTTCAAAAAAAAC ACACACAAAATGGTGTATGGTTACTAAAAAAAAGAGGTCAGTGATCATTAATCAGATATCAGTTT TTGGTTTTTTTTGCCATGTTTTCTCACATTTTTCGGTTGGCAGATTTTCGTGTTTTTTTCTTTCT TTTTTTGATAAATTTATTCCTCGCTTCAAATGGCAAATGGGGTGACTTGAACTGTGTGTACGTGC ATGTGAGAGGGCAGAGACGCAGACAGTGAGGGCCCCTCGGAGCAACAGATGGAGAATTATGTCAA GTTCAGTTGTTTACACATTTTTTTGCAGAACCACTCCCTCTGTGTTCTCCATCTCTTTTTTTTCA TTGTGAAAAGTGTGTGCTTCTCAGTATGAAATGAACTTTGTTCGA Right flanking sequence: Indices 130501 -- 131000 TGACAAGGCTTCCACAATTAAATTTGCAATTTTTTGATAGTTTTAGTACCCACGAGAATACCGTA TTTCTTCTATTAGTATGGCCTCCCTATTAGACTTGCACTCCCTATTAGTATTGCCCCTCGGAGAC CTTCCTTTTCTGAATTTTTACATAAGATTCGAGCTTTTTCAGAAAAAAAAAACTAGTAAGCTGAA AGTCAGAAAAATGTTCTGAAAATTAGTATTGCACTCCCTATTGGGCAAAAATAAAAAAAGTATTG CAAGCGGGAAGACTATCGAAAAATAGTATTGCAGCCATACTAATAGAAGAAATACGGTATAAGCA ATTTAAGATTTTATGCTATCATTTACTATATATAAAGCGCTTATTCCGTTTGTCCATAGTTTGTA GTCTATGTAGTCTTTGTAGTCTGCGAAGTTTTAGCTTCTGGAGGGATATAAAAAATGGAGGGATA TAAAAAAAAAATCAAAAATTTATTTATTTATCGATTTTATGAAAA Found at i:130901 original size:9 final size:9 Alignment explanation
Indices: 130887--130912 Score: 45 Period size: 9 Copynumber: 2.9 Consensus size: 9 130877 GTCCATAGTT 130887 TGTAGTCTA 1 TGTAGTCTA * 130896 TGTAGTCTT 1 TGTAGTCTA 130905 TGTAGTCT 1 TGTAGTCT 130913 GCGAAGTTTT Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 9 16 1.00 ACGTcount: A:0.15, C:0.12, G:0.23, T:0.50 Consensus pattern (9 bp): TGTAGTCTA Left flanking sequence: Indices 130387 -- 130886 ATTTTTTTGCAGAACCACTCCCTCTGTGTTCTCCATCTCTTTTTTTTCATTGTGAAAAGTGTGTG CTTCTCAGTATGAAATGAACTTTGTTCGAAAAATTTTAAAATTGTTAAATGACAAGGCTTCCACA ATTAAATTTGCAATTTTTTGATAGTTTTAGTACCCACGAGAATACCGTATTTCTTCTATTAGTAT GGCCTCCCTATTAGACTTGCACTCCCTATTAGTATTGCCCCTCGGAGACCTTCCTTTTCTGAATT TTTACATAAGATTCGAGCTTTTTCAGAAAAAAAAAACTAGTAAGCTGAAAGTCAGAAAAATGTTC TGAAAATTAGTATTGCACTCCCTATTGGGCAAAAATAAAAAAAGTATTGCAAGCGGGAAGACTAT CGAAAAATAGTATTGCAGCCATACTAATAGAAGAAATACGGTATAAGCAATTTAAGATTTTATGC TATCATTTACTATATATAAAGCGCTTATTCCGTTTGTCCATAGTT Right flanking sequence: Indices 130913 -- 131412 GCGAAGTTTTAGCTTCTGGAGGGATATAAAAAATGGAGGGATATAAAAAAAAAATCAAAAATTTA TTTATTTATCGATTTTATGAAAAGTTAGCAGGACCGCGTAGACCGGTACATATAGGCTAAGAAGC TATTTTTAGCAAAAATTGATAACTGTCTTGTGAAAAACATGTCTGTAAAGTTTCGTAACGAAAAC TCAATCGGTTGCTCAGAAATGAGCCCAGAAGCCTTATGGAAACAAAAAATAAGGAAAAGCTTAGT ACAAATTCATCTCTAAAACGGTTCAAAAAAGTCCGAATCGTATGAAAATGCACCAGAGAGTGACA TTTTGTGTAATTTACCATATTTGAAAGTTTGGTAAAAATTGGAAACTCAGTAGCTTCAAAACGAG CTTAAAGGTACTAAAATGTGAAAATTAGAAGAGTTCATGCTTCCGCTTGTTTCCATGATATGAAA TCAAAAAATACACTGGTAAAACAAGTGAATGAACGTTATTTAACT Found at i:132753 original size:7 final size:7 Alignment explanation
Indices: 132743--132758 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 132733 TTGAAATTTG 132743 ATCCAAT 1 ATCCAAT 132750 ATCCAAT 1 ATCCAAT 132757 AT 1 AT 132759 AAGTGAAATC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.44, C:0.25, G:0.00, T:0.31 Consensus pattern (7 bp): ATCCAAT Left flanking sequence: Indices 132243 -- 132742 TCACCGTCTGCGTCTCTGCTTGGCTCTTCTCTTTCTCTCCATGTGCTCCGGCTCCCCCTCCTCAC ACTCAACCACACACACACACACACGTATACATATCTTCTTATAGTTTTGTTGCATGCTTCATCTC TTTTCTCATCTTTTGCCTTCTATGTACTTTGCTTTTTTTCCAGATCTCCTGATGAACTAAACTCT TGGGAAATAAATTATGAGGATACGGCACGTGGTGTTCTGCCTGCTCGCACTGGTTTATGGTGAGT ACTTTGAGGTTTTGGTGTTTGATAGCAAAAGTCATCAATCTATTTTTCGGGTTAATTGGGTTAAT ATAGGTATTATTATGCAGCTAGATGATGATTTGGTTCTATCTAAACAAAAAAGTGCAATTAAAAT CGAATTCTCACTGGTTTACATAAATTTTTAGTTATAATCACAAATTTAATAGTTTACGCTCTATT TTTTTTTTTGACAAACTAGATATAGTTAAACATATTTGAAATTTG Right flanking sequence: Indices 132759 -- 133258 AAGTGAAATCAAGTTAAGGTTGTTAAGTTTGATATATGTAGTAGTAAATATATAGAAATGTTTTT CATATCAGGTTCAGCCAATCATATTCGAGTTGCGTAGTGCTTATGCAGTTGATAGGTTTTTTGGT ATAATCTAGTTATGTTGTAACTCTAAAAAAATTTTCTAATTATCATCACGAATATGTATATCGTT TAAGAAGTTAGAAAAAAACACTGATTATTTTTTTATTAGCTCAAAAAGTATGTATTAGTCCCATT TAGCTGGCTTTTAGAAATTCGTGTTTAATTTTGATTAGTTTGACTATGGAAATTGTTTGAGCCCA AAGTTAAGCAATTTATGTTATTGCAGATTAGCTGCAGACTTTTTCTATTAGAATAGAATCTTATT ACATAGTTATTATTGCCTAATTTCAGCTATACAAAATGCGACTTATCAACTTATCATTTTAGTTG TAGTTGATCGCAGTTGAAGAAAATTGAAATGTTATTATGATCTTA Found at i:132785 original size:9 final size:9 Alignment explanation
Indices: 132771--132789 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 132761 GTGAAATCAA 132771 GTTAAGGTT 1 GTTAAGGTT * 132780 GTTAAGTTT 1 GTTAAGGTT 132789 G 1 G 132790 ATATATGTAG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.21, C:0.00, G:0.32, T:0.47 Consensus pattern (9 bp): GTTAAGGTT Left flanking sequence: Indices 132271 -- 132770 CTCTTTCTCTCCATGTGCTCCGGCTCCCCCTCCTCACACTCAACCACACACACACACACACGTAT ACATATCTTCTTATAGTTTTGTTGCATGCTTCATCTCTTTTCTCATCTTTTGCCTTCTATGTACT TTGCTTTTTTTCCAGATCTCCTGATGAACTAAACTCTTGGGAAATAAATTATGAGGATACGGCAC GTGGTGTTCTGCCTGCTCGCACTGGTTTATGGTGAGTACTTTGAGGTTTTGGTGTTTGATAGCAA AAGTCATCAATCTATTTTTCGGGTTAATTGGGTTAATATAGGTATTATTATGCAGCTAGATGATG ATTTGGTTCTATCTAAACAAAAAAGTGCAATTAAAATCGAATTCTCACTGGTTTACATAAATTTT TAGTTATAATCACAAATTTAATAGTTTACGCTCTATTTTTTTTTTTGACAAACTAGATATAGTTA AACATATTTGAAATTTGATCCAATATCCAATATAAGTGAAATCAA Right flanking sequence: Indices 132790 -- 133289 ATATATGTAGTAGTAAATATATAGAAATGTTTTTCATATCAGGTTCAGCCAATCATATTCGAGTT GCGTAGTGCTTATGCAGTTGATAGGTTTTTTGGTATAATCTAGTTATGTTGTAACTCTAAAAAAA TTTTCTAATTATCATCACGAATATGTATATCGTTTAAGAAGTTAGAAAAAAACACTGATTATTTT TTTATTAGCTCAAAAAGTATGTATTAGTCCCATTTAGCTGGCTTTTAGAAATTCGTGTTTAATTT TGATTAGTTTGACTATGGAAATTGTTTGAGCCCAAAGTTAAGCAATTTATGTTATTGCAGATTAG CTGCAGACTTTTTCTATTAGAATAGAATCTTATTACATAGTTATTATTGCCTAATTTCAGCTATA CAAAATGCGACTTATCAACTTATCATTTTAGTTGTAGTTGATCGCAGTTGAAGAAAATTGAAATG TTATTATGATCTTAAAAAAATACATATCACTTTAATTATGAGTGA Found at i:133202 original size:8 final size:8 Alignment explanation
Indices: 133189--133204 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 133179 ACAAAATGCG 133189 ACTTATCA 1 ACTTATCA 133197 ACTTATCA 1 ACTTATCA 133205 TTTTAGTTGT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.25, G:0.00, T:0.38 Consensus pattern (8 bp): ACTTATCA Left flanking sequence: Indices 132689 -- 133188 CGCTCTATTTTTTTTTTTGACAAACTAGATATAGTTAAACATATTTGAAATTTGATCCAATATCC AATATAAGTGAAATCAAGTTAAGGTTGTTAAGTTTGATATATGTAGTAGTAAATATATAGAAATG TTTTTCATATCAGGTTCAGCCAATCATATTCGAGTTGCGTAGTGCTTATGCAGTTGATAGGTTTT TTGGTATAATCTAGTTATGTTGTAACTCTAAAAAAATTTTCTAATTATCATCACGAATATGTATA TCGTTTAAGAAGTTAGAAAAAAACACTGATTATTTTTTTATTAGCTCAAAAAGTATGTATTAGTC CCATTTAGCTGGCTTTTAGAAATTCGTGTTTAATTTTGATTAGTTTGACTATGGAAATTGTTTGA GCCCAAAGTTAAGCAATTTATGTTATTGCAGATTAGCTGCAGACTTTTTCTATTAGAATAGAATC TTATTACATAGTTATTATTGCCTAATTTCAGCTATACAAAATGCG Right flanking sequence: Indices 133205 -- 133704 TTTTAGTTGTAGTTGATCGCAGTTGAAGAAAATTGAAATGTTATTATGATCTTAAAAAAATACAT ATCACTTTAATTATGAGTGACTTGAAATTGCTATTTTTTATTGCAATTCATAGTTGATATATGTT CAAAAAAGTCAACAAGTTAACTGATTTGCTGATAGTGAATATTAAATTTAGCGCAATGAGCAATT GATGCAATTAAATGTTAGTTGCAGTTTTATTCTGTTAGTGGGTATTTAGAAAATAGCTAGGTGCA ATTTAAACTAAATTTTCAACAATTTAGGAATTTAAACTTTACTTTTTAGTCGCATCACTTATCTA GGCACCCCACTTTTTAACTTTAAAAGCGCCTAACAATAAGTATCTAAGTTGTCCTGTATTTTATT TTAAAATTGCCAATTTGTTAATTTTTTCTCTATATAATTAATTATCTATTGATATTTACAAAATG TGCCGAGTCCTGCCCTTCCAAAGGAAACTAGTGGGGTGCAATACC Found at i:134287 original size:8 final size:8 Alignment explanation
Indices: 134274--134289 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 134264 GATTTAACAA 134274 GATTTTCT 1 GATTTTCT 134282 GATTTTCT 1 GATTTTCT 134290 TGCAGTGACC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.12, C:0.12, G:0.12, T:0.62 Consensus pattern (8 bp): GATTTTCT Left flanking sequence: Indices 133774 -- 134273 TTATCAGTATTTAGGCCTTGGCTCAAACACATCATAAATTGGTACCTGTGCAAGAAAATTAACCA AATACAGCTTTCTACGACCCTTTTCAATTTTTTCCAGGCGCCGAAACTTCCGACGATGATCTCGA CGAACGGACAAATATCTTCATCCGTGATAAACTGATTCCGGCGTTGAAGCTTGCAGAAGGTAGTT TGTTTTTTTGGACTCAACAGAAAATAATCGCCGGCACTCAAATTAGATGGCATTTATCGTCAGAA GAAGCTTTGGGCAAAATCCCCCGGTAGCAAAGCAAAATAATTTCGTTCGATCAAACATTAAAAGA GATTTTCAACTATATATATAATCAGTGATAAGCCTATAATCTTTAGTGTTTCCCCCGAAAGCACT AATCTATGGGAAATTTCCTTTTCGGGGGACGTGAGTTTATGCAGAAAAAAAAATTGAAGTTTAGT TTATTTTTGGAAGGATTTTTAATCTTGTGATAAGGGATTTAACAA Right flanking sequence: Indices 134290 -- 134789 TGCAGTGACCAAGGTGAATTTCACACGATTACACTTATGCCATTGCTCAAGGGAAGTTGGATGCA ACGCGAGGACTACCGGATGGGTGCCTGGAATCGAGTTCCTTAATGAGACGGATCGCAGTTTTTAT GAGGTTAGGCTTTAACCATGTGGTCGAGTTTTTCCTTGCCCGCAATAGATCCTTATTGACCAAAA CTACAGTAATCCTACAGTACCTCAACCATCTTCCTCTATTAGACCTGTCACCAAAGTATTTGACA AAGCAAAAAAACAAGAATAATTTAATTACTCGATAACTCCAAAAAACAACAAAAAATTGTATTTT GGTTTTTTAAATTTCTTTATCTGATTGTGAATATTTTCGTTTTCCCCGCGATTTCTTTAAAAGAT CAAAAGACTAAGACTAAGATAATCTTACAGTACCCCGACCCTATCCCTCCACTAACCTTAATCTC TTCAAAAAACAATGAGCATGTTTTCTCCTAAGCTACAGTAATCCT Found at i:134989 original size:7 final size:7 Alignment explanation
Indices: 134977--134990 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 134967 TTAATCTCTT 134977 CAAAAAA 1 CAAAAAA 134984 CAAAAAA 1 CAAAAAA 134991 AACATGTTTC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00 Consensus pattern (7 bp): CAAAAAA Left flanking sequence: Indices 134477 -- 134976 GACCAAAACTACAGTAATCCTACAGTACCTCAACCATCTTCCTCTATTAGACCTGTCACCAAAGT ATTTGACAAAGCAAAAAAACAAGAATAATTTAATTACTCGATAACTCCAAAAAACAACAAAAAAT TGTATTTTGGTTTTTTAAATTTCTTTATCTGATTGTGAATATTTTCGTTTTCCCCGCGATTTCTT TAAAAGATCAAAAGACTAAGACTAAGATAATCTTACAGTACCCCGACCCTATCCCTCCACTAACC TTAATCTCTTCAAAAAACAATGAGCATGTTTTCTCCTAAGCTACAGTAATCCTACAGTACCCCTA CAGTACCCCAGTACTACTACAGTACCCCGACCCTATCCCTCTACTAATCTTAATCTCTTCAAAAA ACAATGAACATGTTTTCTTCTAAGCTACAGTACTCCTACAGTACCCATACAGTACCCTTACAACA CTACTACAGTACCCGACCCTATCCCTCTACTAACCTTAATCTCTT Right flanking sequence: Indices 134991 -- 135490 AACATGTTTCTCCTATACTACAGTACTCTTACAGTACCCCAGAGGTGTCCTTATAAGTTTGACTA GTTTTTGTCATTTGGCAGTAAAACTACGGTTCTTCTAAAATTTCGGTTACTTGGTTACTAGGTCT CAATTCTCACACTAGACCAATCCTCTCTTTCCAGAACACGTGCTACACGGACGGAAGCTGCTACC AGAGCGCTCGGCCGTCACCCGAAATCTCACATTTCGGATGCATGGACGAGAAATCTGTGACCGAC GAGACCGAGTTTCACGATACGGCAGCGAAAGTGTGCACGAACAACACGAAAGACCCGCACGCTAC CGTCTGGATTTGCTGTGATAAGGGAAATTTTTGTGCGAACGAGACGATCATCCACTTGGTAAGTG TGATCTCTTTTTTGACATCCGGATTTTGAATTTTCAAATTTTCAGGCGCCAGGCCCGCAGCAGTC ATCCACGTGGCTGATTCTTACTATCCTCGCCCTGCTCACGTTCAT Found at i:135113 original size:8 final size:8 Alignment explanation
Indices: 135100--135118 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 135090 CTAAAATTTC * 135100 GGTTACTT 1 GGTTACTA 135108 GGTTACTA 1 GGTTACTA 135116 GGT 1 GGT 135119 CTCAATTCTC Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.16, C:0.11, G:0.32, T:0.42 Consensus pattern (8 bp): GGTTACTA Left flanking sequence: Indices 134600 -- 135099 AAAAAATTGTATTTTGGTTTTTTAAATTTCTTTATCTGATTGTGAATATTTTCGTTTTCCCCGCG ATTTCTTTAAAAGATCAAAAGACTAAGACTAAGATAATCTTACAGTACCCCGACCCTATCCCTCC ACTAACCTTAATCTCTTCAAAAAACAATGAGCATGTTTTCTCCTAAGCTACAGTAATCCTACAGT ACCCCTACAGTACCCCAGTACTACTACAGTACCCCGACCCTATCCCTCTACTAATCTTAATCTCT TCAAAAAACAATGAACATGTTTTCTTCTAAGCTACAGTACTCCTACAGTACCCATACAGTACCCT TACAACACTACTACAGTACCCGACCCTATCCCTCTACTAACCTTAATCTCTTCAAAAAACAAAAA AAACATGTTTCTCCTATACTACAGTACTCTTACAGTACCCCAGAGGTGTCCTTATAAGTTTGACT AGTTTTTGTCATTTGGCAGTAAAACTACGGTTCTTCTAAAATTTC Right flanking sequence: Indices 135119 -- 135618 CTCAATTCTCACACTAGACCAATCCTCTCTTTCCAGAACACGTGCTACACGGACGGAAGCTGCTA CCAGAGCGCTCGGCCGTCACCCGAAATCTCACATTTCGGATGCATGGACGAGAAATCTGTGACCG ACGAGACCGAGTTTCACGATACGGCAGCGAAAGTGTGCACGAACAACACGAAAGACCCGCACGCT ACCGTCTGGATTTGCTGTGATAAGGGAAATTTTTGTGCGAACGAGACGATCATCCACTTGGTAAG TGTGATCTCTTTTTTGACATCCGGATTTTGAATTTTCAAATTTTCAGGCGCCAGGCCCGCAGCAG TCATCCACGTGGCTGATTCTTACTATCCTCGCCCTGCTCACGTTCATCGTGCTCCTGGGCATTGC AATTTTCCTCACCAGAAAATCATGGGAGGCGAAATTCGACTGGTATATAAGATTCAAGCCAAAAC CTGGAGATCCTCTACGCGAGACGGAGAACAATGTACCGATGGTTA Found at