TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_V Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 20922231 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:7266414 original size:8 final size:8 Alignment explanation
Indices: 7266401--7266416 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 7266391 AATGGGTTGG 7266401 AATTCAAA 1 AATTCAAA 7266409 AATTCAAA 1 AATTCAAA 7266417 TTGACAACAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.12, G:0.00, T:0.25 Consensus pattern (8 bp): AATTCAAA Left flanking sequence: Indices 7265901 -- 7266400 GAAAATTGAAATGTAGTAAATTAAATATGTTGAAAAAGGTATAAAACCTTGTTAGGAAACACTAC GTATTTGATCTCATCCCGATTGGGTGTTGGACGAATATCCAATGCTTTATATTCTTGAAGACCAT CGCATTGCTTGGTGATGTTGGTAAAAGAGAACCAGAACTGAAATATACAGAAAATGGCACATTTT AAACATTTGCTATTATGCCCGTTCTCATGTGCTGCGATGCTTTGCGAGTTATTTAAAAGTACTTA TGTATTTAGTTTATTTGTAGGAAAGTAATAGAAAATCGATGAACTTTCTATTGATCTAGTCTATT GATGCTGATGAGAATGAGACCAAGAAATATCAATCATGTATCAGTAGTTTGTTGTCGGAAAGGGT CTTGTAATCAAAACAGGCATCATCAAACCAGTTTCATTCATCTTAGGCTTCTTATCACATTTATA CTAAACTTTTTCGCAAAAATCCGTTTTGATCACAAAATGGGTTGG Right flanking sequence: Indices 7266417 -- 7266916 TTGACAACAATTCGGCTACCTCTTTGTATTGTCCCCTTAGTGGCAGCAGCTTGGGATATGCACAT TCTCGAAATGCATTGAAAATGGCTTTACTCGTGTTTGGCTTCATGAAATTGTAAAGTAACAAAAT TGATGCTCCAAGAAATGCAAAATTAAAAATTCTTCGGAACGAACATTTTCGGAATAATCCATCTG AATTGTTTTCTACATGAGTATATTTCATAGCTTACAATTTTCTCCAGTCCAAATGTGACGACGAA TCATGCAGAACGCAGTAAATACTTGTAACTTTAGTAATTTTTCTTGTCTAAGAAGTAGTGAAAAT GAGAATGTTGTATAGATTTAATCCAGGGAAATCCAAACGATAGTTCCGGTAGCTGACTGGTTTTC TTGAAAACAATTTGATGCTGGAGATAAAATCAAAAACCATGTGAAAATGTAGAATTTCAAAAAGA CATTGATTGGTTCGAAATTCAGTGATCACCTTCAGTTGCACATCT Found at i:7267231 original size:8 final size:8 Alignment explanation
Indices: 7267218--7267234 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 7267208 AAGCGCTTAT 7267218 TCCGTTTG 1 TCCGTTTG 7267226 TCCGTTTG 1 TCCGTTTG 7267234 T 1 T 7267235 ACATAGTTTT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.00, C:0.24, G:0.24, T:0.53 Consensus pattern (8 bp): TCCGTTTG Left flanking sequence: Indices 7266718 -- 7267217 TCTTGTCTAAGAAGTAGTGAAAATGAGAATGTTGTATAGATTTAATCCAGGGAAATCCAAACGAT AGTTCCGGTAGCTGACTGGTTTTCTTGAAAACAATTTGATGCTGGAGATAAAATCAAAAACCATG TGAAAATGTAGAATTTCAAAAAGACATTGATTGGTTCGAAATTCAGTGATCACCTTCAGTTGCAC ATCTATTGAACATTTAAGTGAAATTGAACCGCTGGTTGGTTGCCAATTTTGTGATTTTGCAAAAC GTTAGCACTTCGGATTCCAGTAATATGAATAGGTTCAGTTTTTCACAATTTTTGAATGGAAATGA ATCAATTAACAGAAATAAAACAGCATGTATTGATGGACTTCTTCGGTAAAATCGAATCAGCTGAT TGGGGATCTGCTTGAACATTACGTATAGGGTGGTTTTGACCAGATCACAAGGAGACCCAAAATGG GCTTCAAGTTAACTGATAATCATTTACTATATATAAAGCGCTTAT Right flanking sequence: Indices 7267235 -- 7267734 ACATAGTTTTTAGTCTATGTAGTCTTTGTAGTCTGTGAAGTTTTAGCTTCTGGAGGGGTAAAAAT GTGTTCATCTACTCCCATACGAATTACATAGCAGTGTTTCGCCATGTTGTTTATTTTTTGAACAG ATAAATACTTCCACTAATCACAATTACTAGCAGGACATCAATGATAATTTGATTTGACTACCTAA GTCGTCAAATCAAAGCTCAAAACCATCTAAACACCGAAGACGTCGAGCTGCATGGGCGGCATTCA ACGGAATCAAGAACCCTACACACTCCATTAACGACAAGAAATTTCGCGCGAACCTGTTCGACTCA ACCCGCGCTCACATACGGCTCACTATCAGAAGTCTGAACCTTCAGCAGAGCCTTATCCGAAAGAG TAAGAATAACACATGCCTCCCTAGAAAGACGGCTGGTTGGACTCACTCCTACATCTCCATCGTGA AGACATTCCAGAGATGTCTCGAGCAAGAGTTCCACTCAACTTCAT Found at i:7267259 original size:9 final size:9 Alignment explanation
Indices: 7267245--7267268 Score: 41 Period size: 9 Copynumber: 2.7 Consensus size: 9 7267235 ACATAGTTTT 7267245 TAGTCTATG 1 TAGTCTATG * 7267254 TAGTCTTTG 1 TAGTCTATG 7267263 TAGTCT 1 TAGTCT 7267269 GTGAAGTTTT Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 9 14 1.00 ACGTcount: A:0.17, C:0.12, G:0.21, T:0.50 Consensus pattern (9 bp): TAGTCTATG Left flanking sequence: Indices 7266745 -- 7267244 AATGTTGTATAGATTTAATCCAGGGAAATCCAAACGATAGTTCCGGTAGCTGACTGGTTTTCTTG AAAACAATTTGATGCTGGAGATAAAATCAAAAACCATGTGAAAATGTAGAATTTCAAAAAGACAT TGATTGGTTCGAAATTCAGTGATCACCTTCAGTTGCACATCTATTGAACATTTAAGTGAAATTGA ACCGCTGGTTGGTTGCCAATTTTGTGATTTTGCAAAACGTTAGCACTTCGGATTCCAGTAATATG AATAGGTTCAGTTTTTCACAATTTTTGAATGGAAATGAATCAATTAACAGAAATAAAACAGCATG TATTGATGGACTTCTTCGGTAAAATCGAATCAGCTGATTGGGGATCTGCTTGAACATTACGTATA GGGTGGTTTTGACCAGATCACAAGGAGACCCAAAATGGGCTTCAAGTTAACTGATAATCATTTAC TATATATAAAGCGCTTATTCCGTTTGTCCGTTTGTACATAGTTTT Right flanking sequence: Indices 7267269 -- 7267768 GTGAAGTTTTAGCTTCTGGAGGGGTAAAAATGTGTTCATCTACTCCCATACGAATTACATAGCAG TGTTTCGCCATGTTGTTTATTTTTTGAACAGATAAATACTTCCACTAATCACAATTACTAGCAGG ACATCAATGATAATTTGATTTGACTACCTAAGTCGTCAAATCAAAGCTCAAAACCATCTAAACAC CGAAGACGTCGAGCTGCATGGGCGGCATTCAACGGAATCAAGAACCCTACACACTCCATTAACGA CAAGAAATTTCGCGCGAACCTGTTCGACTCAACCCGCGCTCACATACGGCTCACTATCAGAAGTC TGAACCTTCAGCAGAGCCTTATCCGAAAGAGTAAGAATAACACATGCCTCCCTAGAAAGACGGCT GGTTGGACTCACTCCTACATCTCCATCGTGAAGACATTCCAGAGATGTCTCGAGCAAGAGTTCCA CTCAACTTCATAAAAATGCAAATCGCGAGAAGGAAAGACTGTAGA Found at i:7268341 original size:8 final size:8 Alignment explanation
Indices: 7268325--7268345 Score: 35 Period size: 8 Copynumber: 2.6 Consensus size: 8 7268315 TTCCTGTGCG * 7268325 AAAAATCA 1 AAAATTCA 7268333 AAAATTCA 1 AAAATTCA 7268341 AAAAT 1 AAAAT 7268346 CATACAAATC Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 12 1.00 ACGTcount: A:0.71, C:0.10, G:0.00, T:0.19 Consensus pattern (8 bp): AAAATTCA Left flanking sequence: Indices 7267825 -- 7268324 GACGGCCACCAATGTGTTGGACTGATTCGCTGCAAAAGGAGATCACCACTCGCGCAGCAAACGGA GAAGTTATCAGAATATGGTCCACTATTGCTAAAGATCGCAAAGAATGGATTGCTCTGATCCGCAA GTTTGTCAATCTGTAGGCAAATTGATGCCAAAATTTGGCAGGAAGTAGAAAACAAGCGAAGTTTG GCAGATAGTTGCATCCGTTTAACAAAACTTTGTCTCTAAATACCAAGATCGTAGAAAACTTCCTC GTAAAAAAATGTTTTTCGAAAATTCTTCAAATTTTGTGCAGGAAAGATGCAACCAAATCTAATCA GTTTTTTAAATTACCAAACATTAGAATTTAAAGCGTCATACTCAAGCGGTAATGGGGAAAAATAT TATTTAGTGAACTTTTTGAAATTTTTGAGAATTTCTCGAAAACTAAATATTAATTTGAATGCTTT GTACGTGGAAAAATTGTTTAGACTTGGTTGCATCATTCCTGTGCG Right flanking sequence: Indices 7268346 -- 7268845 CATACAAATCAAAAAAAGACAAAAAAAATTTCGAAGATTTTTTGATCATCGAAAAACATATTTTT TTGAACGAGGTTTTTCTCAATTTCTTATTGTATTCTCATATTGTAGACTGGATGTATCACAATCC GCACATAGCTCTCAAATTAAAGTTAAAAAGAAGCGAGATCAGGCAGACACCTGAAAAAAAGTGTC TCCGAGCTAGGAGGATACATGGGGAGGTCAAAACTTCTAAAAAGTGCCGTCAAATGAAAGATTAT GTTTGATAACATGAATTCTCACATTTTCAGAAGAATCTATTCGCCACGAGAAAGGGTTAGTTTTA TTAGTAGACAAAAAGTAGCCGCCGAATCCTTTTTCCGAGCCACCTTGTCTTTACCAAATTTACCA AATCAATGTAAATAACTGTTTTTTTTTTGCTGATTTATGCAATAATTTGCTTGTCGACTTACAAG ATCTCTGTTTGTTTTTCTTCTCTTTGGTAATCCGAAAATTATTTA Found at i:7268734 original size:9 final size:9 Alignment explanation
Indices: 7268720--7268738 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 7268710 CCACCTTGTC 7268720 TTTACCAAA 1 TTTACCAAA 7268729 TTTACCAAA 1 TTTACCAAA 7268738 T 1 T 7268739 CAATGTAAAT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.42, C:0.21, G:0.00, T:0.37 Consensus pattern (9 bp): TTTACCAAA Left flanking sequence: Indices 7268220 -- 7268719 AGTGAACTTTTTGAAATTTTTGAGAATTTCTCGAAAACTAAATATTAATTTGAATGCTTTGTACG TGGAAAAATTGTTTAGACTTGGTTGCATCATTCCTGTGCGAAAAATCAAAAATTCAAAAATCATA CAAATCAAAAAAAGACAAAAAAAATTTCGAAGATTTTTTGATCATCGAAAAACATATTTTTTTGA ACGAGGTTTTTCTCAATTTCTTATTGTATTCTCATATTGTAGACTGGATGTATCACAATCCGCAC ATAGCTCTCAAATTAAAGTTAAAAAGAAGCGAGATCAGGCAGACACCTGAAAAAAAGTGTCTCCG AGCTAGGAGGATACATGGGGAGGTCAAAACTTCTAAAAAGTGCCGTCAAATGAAAGATTATGTTT GATAACATGAATTCTCACATTTTCAGAAGAATCTATTCGCCACGAGAAAGGGTTAGTTTTATTAG TAGACAAAAAGTAGCCGCCGAATCCTTTTTCCGAGCCACCTTGTC Right flanking sequence: Indices 7268739 -- 7269238 CAATGTAAATAACTGTTTTTTTTTTGCTGATTTATGCAATAATTTGCTTGTCGACTTACAAGATC TCTGTTTGTTTTTCTTCTCTTTGGTAATCCGAAAATTATTTACTGATTTATCTAAAGGTTTCTAT TTTGCTTCACAAAGATCGAACAAATAGATATTTATTCCGGTTACCACTATTTGTTTGAGAAGTTT TCAACACCATTAGTATCTTCATACAAAAAAATGCATCTGAGAAGTTTCAGAATATTTTCAAATAA ATTATGGAACATTTTAATATATTGTGCAACAATTGTATTCATTTTTATTGTGTAAGTTTTTCAAA TTCAATTCAGAACCAATTATTATGTATTAGAAGCTTATTTTATCTCTTTTTAGAATAGCGAAAAT CATCAAAGCGTCGACGTTTCTTCTGACTGATGGTTATACAACAGAAGAAATTCCTGTGGAGGAAG AGACAACAACTGAAGCAAGTTATGATTTGAGCACATATAATACAA Found at i:7275630 original size:7 final size:7 Alignment explanation
Indices: 7275618--7275634 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 7275608 TACCAGATCA 7275618 CGTAGTG 1 CGTAGTG 7275625 CGTAGTG 1 CGTAGTG 7275632 CGT 1 CGT 7275635 TCTAAATGAC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.12, C:0.18, G:0.41, T:0.29 Consensus pattern (7 bp): CGTAGTG Left flanking sequence: Indices 7275118 -- 7275617 ATGACCGATTTCTATCTCCCTATTGTATTTGAGTGCTATTATAAGTCTTTTTATGGGCCTGTATT CGATCATCAAAAGGGAGCAGTTGGGTGCCCAAATGCTGACACGTGTAAATTACCACAAAGGAAAG AGCATAAATGTGTACATTCGGATGCTGAGTACAGTTCTGGTCCACACATGATACCGTTCACATAT CATTTTTCCAACAACTCATTTTGGAATTGGGAAATCGGATGTTATCAATAAATTTCTTAACAATT GTTTGTAAATATCGTTTTTACACTATAGTTGAATTTTGATGTGTTCATAAGGAAACTTGTTCATT CACATGATAGACGCACGATGCACACCTGGTCATCGACATGTATTACGAACTTTTTCGTGATGACC AACGTGAGAACGCAAAAAAAAATGCCTGTATTCGATTTTGTAAGCAGAACTTATTTTGATTTGTT GGAACCTGAGTAGTTTTTATTAACTTGTGATTTTTTACCAGATCA Right flanking sequence: Indices 7275635 -- 7276134 TCTAAATGACATATTGTCGTTTCCATTTGATCTTTCACAAAAACGAGAAATCCAAAGAAATTCAC TGTGCAAATAGACTTCCACTAAAACAAAAAGTAATACATCGCTTCACTAATGAAAAAAAAAGAAA TCGAAAAATAATGCTTATTTTACCATATTATTTAGTCTTGCACCCCTAGAGGCCAATCGAAAATT AGTCTTACATGCAAGACTAATAGAGGAAATACGGTACATACAAATCAGTGCATTCTCACACCGGC TAACGTTTTATCAAGTCACTGAATCAATGTTTTATTTATTTTTGCTAAATTTTCATTTTTTCTGC TCTATTCTTGCTTCAAACATCTGTTATTGGAGTTTATATCGAATGAAGTTTCAGAATTTACAGCA ATAAGTCGGGCATATAGTTGGTAAAGCTCCTGTTAACAAAATTTGATGAAAATTGCATGAAACAT GCATGCAAAATTTTGTAACAAAAGCTCGATCGGCTCATAAGAATT Found at i:7278569 original size:7 final size:7 Alignment explanation
Indices: 7278557--7278570 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 7278547 GGATGGACTA 7278557 TTTATTT 1 TTTATTT 7278564 TTTATTT 1 TTTATTT 7278571 CTGCTGATGA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86 Consensus pattern (7 bp): TTTATTT Left flanking sequence: Indices 7278057 -- 7278556 CGATATAACCAATACTGAAAAACTGAGAACCATCCGTAAAAAACTATAATTATATTCAGAATCAG CATGTTAGAAAACCGATTGTTCCATGCTTCCATGAACTTTTTATTTATTTTCAAATTTTTGAATC TGAGGGGGTCCCACAGCAGGAACGCGTACTTTTGGAAAATGGCAAGTTACTTCCTATTTCCCTTT CCACAAGTTGCTTTCTGCTTTTCAAAATATCACTCTGCCTATACGATCGAATCCCGTCACAATTC CGACATTTCTAATTTTCTTACTGTCTTATTTCTTCTCCTCTATCGAACGTGATAGATTTTCTATT AGATAATAGCCCACGACACTCAACTAATGTAAGCAACTTTTCCGATATATTAATTTCCGCGTAAT GAGGAGACTTGTAATCATAATGATGAGGAAATTCTGCTTGTTCGAATGTTATCGACAGTTTGCAC CCTTGAAATGGCACTGCAGAAAGGATTTCCACCGCGGATGGACTA Right flanking sequence: Indices 7278571 -- 7279070 CTGCTGATGACCTTACTATTTATTTTAATTATTTCGATGTGGAACACACGAGAGATTAACAAACT CATTAAAAAATTACCCGATATTCATAATCAGTCACATGCACTCACTGAAAATCTAGCTGTTTCTC ATATATTCATTGTTTCTGCATACTACTATCCTATTTCTAAATCGTAAGCTTTCTGACCAACAAAA TGATTTAACCATACAAACAATTGTGCATACAATGCTGTAAGTTTCTACTGCCTTTGTCGGTACAA AGCACATTTAGTTCTTATATACAGCCGACATGACTTTTGAATTGCATATTAAGCTCATTCTGCGC CGATTAGTAATAAATGTGCCAATATGTACACACAGGAAAGACTCAGAGTGTTCGTTAGCCTGCCA AAACTTATTTGACAAAATATATCAAAACTATTACCTACTTCTGTTTTTTTCCGAGTTCTTATGCG TGGCAAGGTGTCAAGCTAAGTTGCTCCGATGAACAAAATACAAGA Found at i:7281436 original size:7 final size:7 Alignment explanation
Indices: 7281424--7281440 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 7281414 ATTTTTAAAT 7281424 GTAATGC 1 GTAATGC * 7281431 GTAATGT 1 GTAATGC 7281438 GTA 1 GTA 7281441 CATAGAGCAG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.29, C:0.06, G:0.29, T:0.35 Consensus pattern (7 bp): GTAATGC Left flanking sequence: Indices 7280924 -- 7281423 TACAAATGCATACACACAGACGCAAAATATGTTTCCAGTCCCAGTCTTGAGCCATATACCTATCA CTTCTACACTGATGAATTTTGGTCAAAATACTATGGATGTTATCATTAAATAAAATTTTTTTTTT GTAACCGTATTCGAGTTGTTTGTAATGACGATCAAGTTCAAATCGATGAAAATTAGTATCATCAT TGTTCATACATAGAGAAGTACATGTCTGTTTACAGTGATTTGATAGGGATTGTCTAACTCGAACA TCTGCTGTGATTTGTTACCAATTGCATTGTCTTGGGCTGGTAAACCGGACGCACCGTTTTTAAAG TCCCTATTCCTACCACTTTCCAACAGACTTTGTCCACGGCGGATGCTAAAAAATAGGAATTCCAT GTAAACCGCACACACGCTTTTGCTGGTATTTCGGCCACATCAGCTGGCCTCACGTCTCAACCTGC ACCTTCTGTTAAAACGTACTTTACTTTTTTATCTCATTTTTAAAT Right flanking sequence: Indices 7281441 -- 7281940 CATAGAGCAGAAATTAGAAGTGTCATTCAATATACTATACATACTATTGTAATAAAGTTTAGTTT ATCATTTCCAGTTCACCTAATTTTATTTTTATGAATTTTGACCGGCAACGCAATGGGTGCAAAAA AATACGCCAAGCCCGAATCCCTTTTTCCCTTATTTCACTGTTATTTTTTACGATAGCTTTGTCAC TAACAGAATCTCAAAATATATCACTTTGCATAAAAGTTGTATGTTCTCCACATAATACTAACTAA CTATTTTGTAGTGAAATAATTCACAACACTCATTTTAGATTAAAAAAGATACGCGTATCGTAGAC AGCAAAGTAGCTTAACAGAAAACCAAACCATTTCTCATTCCGGAACAGTAAGATTAAATCAGTTG AAAATAGCGCGTTTCGAGAAAAAGAAAGGCGAATTTACAACTACTTTGTAGTGAACAAGCTTGGA CCGAGTTATTATATTCTTTACGGCACTCTAAACTTGTCTAGTATT Found at i:7281601 original size:8 final size:9 Alignment explanation
Indices: 7281588--7281606 Score: 31 Period size: 8 Copynumber: 2.2 Consensus size: 9 7281578 CAAGCCCGAA 7281588 TCCCTT-TT 1 TCCCTTATT 7281596 TCCCTTATT 1 TCCCTTATT 7281605 TC 1 TC 7281607 ACTGTTATTT Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 8 6 0.60 9 4 0.40 ACGTcount: A:0.05, C:0.37, G:0.00, T:0.58 Consensus pattern (9 bp): TCCCTTATT Left flanking sequence: Indices 7281088 -- 7281587 AGTTCAAATCGATGAAAATTAGTATCATCATTGTTCATACATAGAGAAGTACATGTCTGTTTACA GTGATTTGATAGGGATTGTCTAACTCGAACATCTGCTGTGATTTGTTACCAATTGCATTGTCTTG GGCTGGTAAACCGGACGCACCGTTTTTAAAGTCCCTATTCCTACCACTTTCCAACAGACTTTGTC CACGGCGGATGCTAAAAAATAGGAATTCCATGTAAACCGCACACACGCTTTTGCTGGTATTTCGG CCACATCAGCTGGCCTCACGTCTCAACCTGCACCTTCTGTTAAAACGTACTTTACTTTTTTATCT CATTTTTAAATGTAATGCGTAATGTGTACATAGAGCAGAAATTAGAAGTGTCATTCAATATACTA TACATACTATTGTAATAAAGTTTAGTTTATCATTTCCAGTTCACCTAATTTTATTTTTATGAATT TTGACCGGCAACGCAATGGGTGCAAAAAAATACGCCAAGCCCGAA Right flanking sequence: Indices 7281607 -- 7282106 ACTGTTATTTTTTACGATAGCTTTGTCACTAACAGAATCTCAAAATATATCACTTTGCATAAAAG TTGTATGTTCTCCACATAATACTAACTAACTATTTTGTAGTGAAATAATTCACAACACTCATTTT AGATTAAAAAAGATACGCGTATCGTAGACAGCAAAGTAGCTTAACAGAAAACCAAACCATTTCTC ATTCCGGAACAGTAAGATTAAATCAGTTGAAAATAGCGCGTTTCGAGAAAAAGAAAGGCGAATTT ACAACTACTTTGTAGTGAACAAGCTTGGACCGAGTTATTATATTCTTTACGGCACTCTAAACTTG TCTAGTATTTTTTAAATTTTATCCTGAAACTTTAAAACAATTGTCTTCCAGAAAGGTGAATGCGA GTATCACGTCGCATGTTGCTTAATGGTTTATATCTATTTTCTGCATTCGCAATAATATATCTTTA CAAATGGTCTGCTCAAAGTTCAAAATATAAACTGCCAGCATCTAC Found at i:7287264 original size:7 final size:7 Alignment explanation
Indices: 7287252--7287265 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 7287242 TGTTTTGAAA 7287252 AAGCTTT 1 AAGCTTT 7287259 AAGCTTT 1 AAGCTTT 7287266 TCTATTAAGA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43 Consensus pattern (7 bp): AAGCTTT Left flanking sequence: Indices 7286752 -- 7287251 TATTGGTAGCTTTGAGTACCGCAGAGATACGCTACGCATACGTATTTTGCAATAATTATTGATGC CCTATTTTTAAAATATATTTAGGTACGCTGAAACATTTGATTTCGTCGCCACATTTGGATTTATT GAGAGATCTGGCCTGGGTCGATATCGTGAACCAATGGATCCCATTGGAGATTTACGCGAAATTAT GAAAATAAAATGTGTTTTGAAGCAAGGAGGTATTTAACCCAAATAGAAAAAACAACGTTCAATTG TTGAAATGAGTAAGGTAACTGTTTCCAGGTCTCTTGTACCTGGGTCTCCCATATGGTACCGACGC TCTTCAATTTCAATCTCAAAGAATATATGGCTCGCTTCGTCTTGCGATGATGTTCAGCGGTTTTG AATGGGTTGCAACTTTCACCGGAAGATCTCCAAAGCGTGTGCAATTGAGATCTCAGAAAAGACAG AGTACCAATTTATTCAACCCAATACGTTATACCTTTGTTTTGAAA Right flanking sequence: Indices 7287266 -- 7287765 TCTATTAAGACTTAACATATTAATGGTAACAATAGTAATTCATTGATTCAGTTTACAAATATAAT AAATGTCTCTTTTTTTCTTGCTTGATGGATTCTGTAAAGATAACTTAATCACATTTGTCAAACAT TTCTTTCTTCAATTCCCCCAATACTTATCAGGCTATAAAAACGTTTCGCAATCAAATTTCCATAC TGCAAGCTAACCCGAAGTTTAAGGACCATAATCTCAAAGACCCGAAAAATTAGTTTGACGCGCAA AGAGGACGCGAAGCACCAATTGCGAAGAATTTAGGCCTGTAGGGTCATACATTTTTCCCGCCATT CCCCTTCCGCACGCCGGGTACAACGATTTGCAGAGTCCATATATATATATATTTATTCATTCCCT GAATTCAAAAAAAAAAATCACAGAGTTTTCAACGGGAAAATAAGAAGAGAAGGTGTGAAAAATTG TTAAAAGTGAACAAATGTACGTTTTTTTCTCGATAATACCATCTA Found at i:7287831 original size:7 final size:7 Alignment explanation
Indices: 7287819--7287832 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 7287809 ACAGTTCAAT 7287819 CCTATAA 1 CCTATAA 7287826 CCTATAA 1 CCTATAA 7287833 AGTAATCGGC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.29, G:0.00, T:0.29 Consensus pattern (7 bp): CCTATAA Left flanking sequence: Indices 7287319 -- 7287818 TACAAATATAATAAATGTCTCTTTTTTTCTTGCTTGATGGATTCTGTAAAGATAACTTAATCACA TTTGTCAAACATTTCTTTCTTCAATTCCCCCAATACTTATCAGGCTATAAAAACGTTTCGCAATC AAATTTCCATACTGCAAGCTAACCCGAAGTTTAAGGACCATAATCTCAAAGACCCGAAAAATTAG TTTGACGCGCAAAGAGGACGCGAAGCACCAATTGCGAAGAATTTAGGCCTGTAGGGTCATACATT TTTCCCGCCATTCCCCTTCCGCACGCCGGGTACAACGATTTGCAGAGTCCATATATATATATATT TATTCATTCCCTGAATTCAAAAAAAAAAATCACAGAGTTTTCAACGGGAAAATAAGAAGAGAAGG TGTGAAAAATTGTTAAAAGTGAACAAATGTACGTTTTTTTCTCGATAATACCATCTATGCAATAG GTATCGATGGAAGTTATGGTTTTGGTTCTATGTACACAGTTCAAT Right flanking sequence: Indices 7287833 -- 7288332 AGTAATCGGCAATGTTCTTGGGAGATCTATTTAATTTTCGGCCGTGTATCTCATCAAAACGTTTC TCGTGGAGATATTAAGTATCATGTTTCAAGTTGACTCGAAAGTTACTCGAGAAACGATTTCTAGG TTTTTGAATAGTATAGTTTTTAGTTGTGTAGCGGAATTAGAAAAGGTCTCACAAGTGCAAAAAAA ATATTTATTTAGTCAATATACATACATACATATTACTATTTAATTAATAATGAAATTCAAAAAAT TACTAGTCCCCTGCTTGCCCTAGTTCGGTCCAAAAATTTTTACTTGATTCAGAAATTTGATAAAT TTGGAAAAAATATTGGTCAAGGCAGTGGCAAGACTTGGTTAAGTCAAGTTCAACCAAGTATGATG CCAATTTTTTATATAATTTGTGACGTATTAAGGTCAGGGTAACCATATGACAGTGTTGAATCAAA CTTGGGATAAACCTGGACACGCCATCTATTTTTCATCCAAATTGA Found at i:7288523 original size:8 final size:8 Alignment explanation
Indices: 7288510--7288525 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 7288500 TCAGAAACAC 7288510 AAATTTTT 1 AAATTTTT 7288518 AAATTTTT 1 AAATTTTT 7288526 CTTTTGATGC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62 Consensus pattern (8 bp): AAATTTTT Left flanking sequence: Indices 7288010 -- 7288509 CTCACAAGTGCAAAAAAAATATTTATTTAGTCAATATACATACATACATATTACTATTTAATTAA TAATGAAATTCAAAAAATTACTAGTCCCCTGCTTGCCCTAGTTCGGTCCAAAAATTTTTACTTGA TTCAGAAATTTGATAAATTTGGAAAAAATATTGGTCAAGGCAGTGGCAAGACTTGGTTAAGTCAA GTTCAACCAAGTATGATGCCAATTTTTTATATAATTTGTGACGTATTAAGGTCAGGGTAACCATA TGACAGTGTTGAATCAAACTTGGGATAAACCTGGACACGCCATCTATTTTTCATCCAAATTGATG CAAGAAGTTGGCGCCAAATGCTGCCGGCAAAGGATCACAATAAAGTATACCTAAATGGTTTTTTT GTTGAATATTTGCAACATGTGGCAATTTTTTGTTAACAACAAATCACATGTTTACGTCACACAAA ATATTGAAACTGTTTCCCAAAATGATTGCGCCATTTCAGAAACAC Right flanking sequence: Indices 7288526 -- 7289025 CTTTTGATGCATGTAACACATTATCTGTACAAAATTGCAGCAAGGATAACAGTGTTTGTGTTCAA AAATACTCCGCAGATATTTGTCTGATCTATGAGAAACTGGTTCTTGAATTGGATATTGGTAACGT TTATCTCCGGTACAGACCCAAATGTCGTGTTCTAGTCAAGATAAAATCTTTTTGATGGTCCAAAT ATTCTTAAAGAGTTTTACTTTTAATTGTATTCTGAACAAATTATTGATTTTTACCAAATGCAGAA AAAAATATTCATAATTTTTTGCCTAATCTATTTGTCTGCAAAGGATCGATTTAATCCGTTCAGCA GAATTATTACTCTTTTGCATAATTATTTTGACAACTTGGGCCTGTAAGTGTATGCAGTTGATAAT GATGTACCAAACAAAATTTTAGTCCGATTGAGAGCCCTACATGTGACGTTCCCGATTGGAATAGA ATTACTACAAAATCGGTTCCTCATGCCGCGGATTTCAAAAAATGG Found at i:7290948 original size:8 final size:8 Alignment explanation
Indices: 7290935--7290950 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 7290925 AATTTTAACT 7290935 TGTTGAAA 1 TGTTGAAA 7290943 TGTTGAAA 1 TGTTGAAA 7290951 AAATGCAAGT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38 Consensus pattern (8 bp): TGTTGAAA Left flanking sequence: Indices 7290435 -- 7290934 ATAAATCCGTTTTTATACTTAAAATCACACATTAACACAGGTGCTAGTCAAAAATTCTGAAGAGG CAAGGCAATTCTCTACAATTATTAAAATTTTGGATTTTCCCCCTCTTTTCACTGATTTTACGACT TGTTCGATTCATGACAAATCCACAAACGTTGCTGATAGCAAATAGACATACAAAAATGGTTGAAC ATTTATCTTCAATTCATCTAAATTTCAGGATTCTACTACTTCTCACAAAACTATAGTTTTCGATA GAGAAGGTTTAAAAAGTAATGCGCTTTATCACTTAATAGTTCAAATCTGTTCCTAGAAACACGAT TAAACTTGTTTTATTGTATTTTCACAGAAGGTTCTTTTGAAACATGCTATCGAAAAGTTCTACAA AATTCTTCACACAGCTCATTTACAGTTTTCGGTGCCTACGTTGGCGCCATCGCCGATTCTTTGTT CAGACTCCGGAGGGTTGCTAAGAATGCTAATATCAAATTTTAACT Right flanking sequence: Indices 7290951 -- 7291450 AAATGCAAGTTTGAAAGATATAAGTCCTTATTATTTCAACCGCCACCACGACGCTCCCGGAAATG TGTTTCCATAATTATTGTCCATCCTGTGTTATTTGCGAATTTTTATTTGACTTTTTATTGTTATT TGAGATTCCTGCAGATTCAGATTTAATAAATTTTACATTCCACCTTGTTGTCTCTGTTTGCGTGT TCAATTATCACACTTGCTTAATAGTTCTAAGTTATAAGTAAAAATGATACTAAATTTGTCAATCA AATATTAAAAATTAATTAAAAATTAATTAATATTATAAAAATTTTCTATATTTATATAGTTTGCG CATGTTTGCTAGTGGGAAAGAAACGTCTCCCCTGCCCTTGGACCACGACTTAAAAAAACGTGACA ACTAACAGGTGTAACTGTCTAAGTAAGCAAGCACTTGAGCGCGCTTTCTTCCATTTCCGCTGATT TTGTAGTAATCTTTTGCATTGTAAACCAGTACTTTTGATGTATTG Found at i:7291183 original size:7 final size:7 Alignment explanation
Indices: 7291168--7291184 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 7291158 CTTGCTTAAT * 7291168 AGTTCTA 1 AGTTATA 7291175 AGTTATA 1 AGTTATA 7291182 AGT 1 AGT 7291185 AAAAATGATA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.35, C:0.06, G:0.18, T:0.41 Consensus pattern (7 bp): AGTTATA Left flanking sequence: Indices 7290668 -- 7291167 CTTCTCACAAAACTATAGTTTTCGATAGAGAAGGTTTAAAAAGTAATGCGCTTTATCACTTAATA GTTCAAATCTGTTCCTAGAAACACGATTAAACTTGTTTTATTGTATTTTCACAGAAGGTTCTTTT GAAACATGCTATCGAAAAGTTCTACAAAATTCTTCACACAGCTCATTTACAGTTTTCGGTGCCTA CGTTGGCGCCATCGCCGATTCTTTGTTCAGACTCCGGAGGGTTGCTAAGAATGCTAATATCAAAT TTTAACTTGTTGAAATGTTGAAAAAATGCAAGTTTGAAAGATATAAGTCCTTATTATTTCAACCG CCACCACGACGCTCCCGGAAATGTGTTTCCATAATTATTGTCCATCCTGTGTTATTTGCGAATTT TTATTTGACTTTTTATTGTTATTTGAGATTCCTGCAGATTCAGATTTAATAAATTTTACATTCCA CCTTGTTGTCTCTGTTTGCGTGTTCAATTATCACACTTGCTTAAT Right flanking sequence: Indices 7291185 -- 7291684 AAAAATGATACTAAATTTGTCAATCAAATATTAAAAATTAATTAAAAATTAATTAATATTATAAA AATTTTCTATATTTATATAGTTTGCGCATGTTTGCTAGTGGGAAAGAAACGTCTCCCCTGCCCTT GGACCACGACTTAAAAAAACGTGACAACTAACAGGTGTAACTGTCTAAGTAAGCAAGCACTTGAG CGCGCTTTCTTCCATTTCCGCTGATTTTGTAGTAATCTTTTGCATTGTAAACCAGTACTTTTGAT GTATTGTTTCTAGAGCAATTTGACTGCGGTGAACAAAAGCTTTGTTTTTTCTTGTTCCCAGCAGC ATTGTCCTAAATTTATTAAACTACTTCCTCAACGAATATTTTATCGGCTTTGATTCACATCTTCG ATTTTATTTCATGAGATTCGTTTATCGAGACAACATCGCTGTTTCGTATTTTTGGTGTCTGTGGA AGTTCTACGCTAAAGAATTAATGGTATTGGTAAAGTCACATAAGA Found at i:7294737 original size:9 final size:9 Alignment explanation
Indices: 7294712--7294737 Score: 45 Period size: 9 Copynumber: 2.9 Consensus size: 9 7294702 TTTTTTTCTA * 7294712 TGTCTTAAG 1 TGTCTTACG 7294721 TGTCTTACG 1 TGTCTTACG 7294730 TGTCTTAC 1 TGTCTTAC 7294738 TAATTCATTA Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 9 16 1.00 ACGTcount: A:0.15, C:0.19, G:0.19, T:0.46 Consensus pattern (9 bp): TGTCTTACG Left flanking sequence: Indices 7294212 -- 7294711 TACACCATGAAGTACTATGATTTGTATTATTTCAATAGAAGATCAGGAATCACGTGTCCTGGTCC ATTATATTGTAAATTCAAACAACACCCAAAGATCAACTGCATGCAAGCCAATGTCACATACAGTT CGATGAGAAAATTGCTGCCTATCACGTATTATTATGCAACAGATCCTCATTTTTCTGAAGATATC GGATGTCATGCACATTGACAATTTTTCACAACATTACGTCACAATTGACTGATTCTTATTTATTC ATTATACCCGGTCTGCTAGGAATAAAGAAACGGAAAATATGTCTTAAATATTTATTTTTTTAAAA TTAATTTTCAATCATGAGATACGATTTTTGTAATATCATTGAAACAATATCGTTGGGCTCAGTAG ATAAAAATTGTATCGTGTTTTAACGTAAATTAGCATTTATCAGAAAAATAGAGTATTACCGATTT TTTTCTCAATCTTATTTCATTTCTATGTATATGAATTTTTTTCTA Right flanking sequence: Indices 7294738 -- 7295237 TAATTCATTATTTTCAATATTCTTTAATTTTCTCCACGATTTTCAAGGTTCAAACGCAATAAATT ATTATAAACTAAATTATACCGATACATGAGACGCGAACAATCAGGAAATAGAAAAAAACGCTGAG AAAATATGTTCCCCGCACCGAAAACACCGCGAAGCCACGTGACAGCTCACGGAAACGTATATGAT AATAAACTTGGGGTTTTATAACTGTTTGAAAACCCTGAAAAAACGCGTTTAAATACAAATATGTG AGTTTCGACGTGTTTCCGTTGCGGGGGAACAGATTTTCTTTGCGTCTATGATCCCAATTTTTGAG ATATTTGGAGCTAAAATGAAATACCATATCAGTTTTTCTTGAAAATGTTATGAAATAGTTTCTTG TCAATAAAATGCAGTACTGTTGCTGTCAACCACATATATTTTTGAACTTTTCTGTTTTTATCATG AATATTTGTTTTCTTTTTTTTTCTAACTATAAGGTAGAAGGTGTA Found at i:7295216 original size:10 final size:10 Alignment explanation
Indices: 7295197--7295216 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 7295187 ATCATGAATA 7295197 TTTGTTTTCT 1 TTTGTTTTCT * 7295207 TTTTTTTTCT 1 TTTGTTTTCT 7295217 AACTATAAGG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.00, C:0.10, G:0.05, T:0.85 Consensus pattern (10 bp): TTTGTTTTCT Left flanking sequence: Indices 7294697 -- 7295196 ATGAATTTTTTTCTATGTCTTAAGTGTCTTACGTGTCTTACTAATTCATTATTTTCAATATTCTT TAATTTTCTCCACGATTTTCAAGGTTCAAACGCAATAAATTATTATAAACTAAATTATACCGATA CATGAGACGCGAACAATCAGGAAATAGAAAAAAACGCTGAGAAAATATGTTCCCCGCACCGAAAA CACCGCGAAGCCACGTGACAGCTCACGGAAACGTATATGATAATAAACTTGGGGTTTTATAACTG TTTGAAAACCCTGAAAAAACGCGTTTAAATACAAATATGTGAGTTTCGACGTGTTTCCGTTGCGG GGGAACAGATTTTCTTTGCGTCTATGATCCCAATTTTTGAGATATTTGGAGCTAAAATGAAATAC CATATCAGTTTTTCTTGAAAATGTTATGAAATAGTTTCTTGTCAATAAAATGCAGTACTGTTGCT GTCAACCACATATATTTTTGAACTTTTCTGTTTTTATCATGAATA Right flanking sequence: Indices 7295217 -- 7295716 AACTATAAGGTAGAAGGTGTAAGAAAAAGATCAAACAAATAAATTTTCACGATTTTATTTTAGGA GACCGGGAAGCTATAAATTAAAATTCATATCCAATTTTTACCAAGTGCAATTAGAAAAAATCTAG TCAATGTGCATAGCATCCCATTTCATCAGAAAAATAAGGATCTGTTGCATAATAATACGTGACAG GCATCAATTTTTTCATCGAACTGTATGTGGCATTGACTCGCACACATTTGATGTTTACTTGTTGT GTGAAATCGCAAAACTGTGGACCAGGGCACGTAATCTCTGATTTACGATTGCTATAGTACAAATC GTAATATTTTTCGTTATAACATTTGAGCACAAGATCCGAGTAGTAGCGAATTCGGGGAAGTTTTG AGAACATTCTAGTTTTTTGCAGCCTTGTCATCATTTTGCGAAGATCATCTTCAAGATCCATAATG TCTTTTTTAGGGATAATTGCTGAAGAATTGTCATAATAAAAGGGC Found at i:7296531 original size:10 final size:10 Alignment explanation
Indices: 7296512--7296531 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 7296502 AAACCCACAT 7296512 CTCCTTCATA 1 CTCCTTCATA * 7296522 CTCTTTCATA 1 CTCCTTCATA 7296532 AGATTGTAAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.20, C:0.35, G:0.00, T:0.45 Consensus pattern (10 bp): CTCCTTCATA Left flanking sequence: Indices 7296012 -- 7296511 CACTTTTACCGGTTTCCCTCTGAAATGTAGTTCTATCAAATAATATAGAAGCTTTTCCCTACAAA ATGCTTGTAAGTCATACTGCCAAACATGTTTTTAAGCGAAAACCTGACACCATATCTTGTAACGA CTGCATTATAGTTTTCCTTCTGATAAAAAAGGTATGATATTTGCTCATTTTTATCGAATAATTTC TGGAATTCTTCCGCATATGTTGGAGCTAATCGTGGAATCAGTATATCATCTAAATCCAAAAAAGT AATGAAGCGGGCGGCTTCCTAAAATGAACACAGTACATACAACAAGCTTTTGAATTTCTAATACC TTATATTGTAACAGGCAATCTGATTGAGCAGCTACTTGACTTCTCAATTCAATTTGATTATGAGT ATCCGCAATTTTTTTGGAAATTCCATGGAACTTCACTGAGGCCCACGGTTGTACTGAGAGATATC CCTAAATCAATTTTAAAATCACAAATGACCCCGAAAAACCCACAT Right flanking sequence: Indices 7296532 -- 7297031 AGATTGTAAAATGTGTTCACGGCACTAATAAGATATAAATTGACAAAAGCACCATATCTAAACGT TGAAATAATACATCGCCCAAAATTTTTGATCAACATACTTTTTGTAAATGTGAACAGCGAATAAA AAGTTTTGCCATTGCTCACTGACAAACAACGGAGCAATACAAACCACTACATCTCGGTTTATATA AGATGGCTTTGTGAATGGAATCTAAAATTTTTTAGATTCATTTGATTGTACAATTTAAAAATAAA AATATTACCTCCGTCCTTCCATCATCTGAAACCATTTCAATTTTTCCAACATTTGGAATCAACTG GGCTGTCGCGAATATTGTAATTATTTGGCACTGATCATTGTATGTAACTCTAAATTTTTTTAAAA TGTTATTCTCTAATTTTGATGATTATTTGCGGGCAATTGAACATTTTAACACATACTTCGCACAT TAAAAAAAAGTAAAAACAACAGAATATACTACTTAACAAGATACT Found at i:7304156 original size:7 final size:7 Alignment explanation
Indices: 7304144--7304158 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 7304134 GAAAAAGTTG 7304144 AAGAAAA 1 AAGAAAA 7304151 AAGAAAA 1 AAGAAAA 7304158 A 1 A 7304159 TGTACACATA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00 Consensus pattern (7 bp): AAGAAAA Left flanking sequence: Indices 7303644 -- 7304143 ATTTTCAGGTAGACGATATTAAGGATCCAAACAGGGAAGAAGTCATTGAGCCTCACTTTTATGAT AATTCATCAACCACAATTATATCCAAAAAGGACATAATTGATCTCGAAGATGATCTTCAAAAAAT GATGAAGAAACTGCAGGACACAAGAGTATTTTCGAAGTTGCCTCGAATTCGCTATTATTCGGATT TGGTGCTTAAATGCTACAACGAAAAATACTACGATTTGTTTTACAATAACAGAAAAACGGAGATT ACATGCCCTGGGCCTCACTTTTGCGATTTCAAACAACATTTGACTATCAAATGCATGCGAATAAA TGCTACATACACTGCCATGGAGACATTGTCACCTGTTACTTATTATTATGCAACTGATCCGTATT TTTCTGACACAATGGGTTGCTATGCAAATTAGACACTGTTTAACGAATTTGATTTTATAATTAAT TTAATTTAATTTATTTACGCTCGCGAGGAGACGTGGAAAAAGTTG Right flanking sequence: Indices 7304159 -- 7304658 TGTACACATACAATCGATCATAAATACAATACACTGAATAAGAGGGATAGAAACAAGAAGAATAA ATAGGAACGAAAGTTTGTTAACAGGACAGTTAGGTCAGGCGGGAGGAAATAATGTTATGTGGGTA GTTCATGTTGCGATCATCAGTTGTCAGACATCTCGTTATTCAAGATCTGATATATGTTTTAGAAA CTTGGGGTTACTCAGCGTACGGTTTACAATAAAATGCTTTCTAGTTTTAGTTTTACATCTGCTCC ATGAGACTTTCTTTTTGGAACGAGTTCGTGTGTTTTCAGAATATGTAAAAAATTGAGGTACGTTG AGATCTAGTTTACCATTAATCATCTTCATAATAGTTTTTCTGTCATAGATTTGGCGCCGCGTTTG TAGTGTTGTGAGCTCAAAAAGTTCATTGCGTTCGGATGCAGATTTATACTCCGTGTCAGTTGGCG AGATGTATTTGCCTTGTGTTCTACTGTATAATCGTCAGGTAAATG Found at i:7305175 original size:10 final size:10 Alignment explanation
Indices: 7305156--7305176 Score: 35 Period size: 10 Copynumber: 2.1 Consensus size: 10 7305146 TAAAGAATTT 7305156 TCTCGAAAAA 1 TCTCGAAAAA * 7305166 TCTTGAAAAA 1 TCTCGAAAAA 7305176 T 1 T 7305177 TAAGTCTCTG Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.48, C:0.14, G:0.10, T:0.29 Consensus pattern (10 bp): TCTCGAAAAA Left flanking sequence: Indices 7304656 -- 7305155 ATGCGTTTTGAACTGACTCAATGGCTCTTGTTTCAGAGTTTCTTATTGGGCTAGTAATTACCGTT CCATACTCAAGAAGAGGTCTAACAAATGTCTTGTAAAGCAAGGTCATCAATTTTGGGTTTCTACT GTTATACATATTAAATGTTTGACTAAGAAATACACGCAATTCAAATTTTTTTTTGAATAAAGCAT ATTAGGCGTTTTTTTCAGTTCACGTAGGAAAATCGATATCGTGGCAAGACCTATCGTGTTGTGAC CACAACATATCTCGCGCAGGAATTCAAACTACCTCAGAAAAAACGTTGCTGAGAATTGAATTTTT CCGAAAAATGTGACGGAGATTCGATTTTCTTCAGATACATTTTGGCGGTGAAATAAACTTTGAAA ACTCGAGAAATCTCACTTGGTAAGGTGTCGGAAATTTGAGAAACTTGAAAAAACTTTGAGGAGAC AAGAAAATATTTAGGCACATTAGGAAAAAAAGGTTTAAAGAATTT Right flanking sequence: Indices 7305177 -- 7305676 TAAGTCTCTGATAAGTAAAAAAACAAGTAAAAAATAAGTGTCAAAGACCTGAAAATTTTCAAAAA AATTCTAGAATACGTGGGAACTGGCAGGAAAATACTTGAAATTTTGAAAAATGTTTGGGATTCTC GGAAATCTTGGAAAGTTCAAAAAACGTCAATATATATGTGGTGAGAATAGGAAATCTACTTAAAT TGATGAGAATAACGCTAGCAGCTTTATGTGTTTGTTAAACAGTAAAAACCGCAATTTCACTTTGT TAGCTTTTGGAATCCTGAATTTAAATCCAGCATAAATCTTTTTATCACAGTTGACATATCTTGTG GTCATGACGAGGTTGGAGAAGCTGCTAACTTGAGCGGTGTGGTCAATTATCTCATAGGAAATCTG ACAAAATTTAGGAAAACAAACAAGAGATTTAGAAAATTATAAATTCCGGTATTGCAATGGGTTTT GATGATGAAGTCAGATTGATTGTTTGACAACCCAAAATAAAATCA Found at i:7308772 original size:7 final size:7 Alignment explanation
Indices: 7308762--7308775 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 7308752 AATAGAGAAC 7308762 AAAAATT 1 AAAAATT 7308769 AAAAATT 1 AAAAATT 7308776 TAGAAAAAAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29 Consensus pattern (7 bp): AAAAATT Left flanking sequence: Indices 7308262 -- 7308761 GGTGTTGGAAGACAAGAAGTATATTCTTCTTAAACCAAAGCATGCAACATATATGGATATAATAT ATATAAGAGCTTTTATTGTTAATGTTGCTGATAGCGAATGTACTGATTTGTATATAAAATGAAAA TTATTTTTAAAGTTCATAACGTTTTCAAAATATTGATTTCTGTTGTTGTATTCTCGCATAATTAA AATTATTAAACGGTAGATTAATTTTAGAGTGATTTTCTGGGTTTTTAGTATCCACAAATTATTCT AGAGAATAATTCGTGTGAGGATTTTATCTATTTTTTGTTTCCACGCGGCTTTGAGCATATTTTTT ATCAGCCGATTGAGCTTTCGTTACGAAATTGTGCATACATGTTTCCTGCAACTTTCGTCAAATTT TGCTAAGAAGAGCTTTGTCAACTATAATATGCCCTTCTTATCGCTGTAAATTCTAAGGTTCCATT CAACGTAAACTCCAATAACAAATGATTGAAGCAAGAATAGAGAAC Right flanking sequence: Indices 7308776 -- 7309275 TAGAAAAAATGAATAATGAATTGTTTCAGTGACTTGATAAAAAATTAGCCGGTGTGGGTAAACCC ACATGTTTAGTTGACGAAGCTCTTTTTAGCGGAAAGCTTGCCGAAATTTTTTTTTTAATTTTCCA CATTCAGACAATTTTTGAGCACTTTCTCGGTTGTTACAATTCAAATAAGTCATTTCGTTAGTTTT GGATAAAATCTGAAATACTACACTGCAGATTTCCTTTTTTTTCCAAGAAATATTTTCAAAAAATC TCCCATAATGTTTAACTATTTTAAATGTTTTTTCTGATATCTTAAAAATTGAGAGCAAAAGAGCA AAAAGTTGAAAATTCGACCGACCTTGCGATTTTTGATAATTTCACCGAAAATTCTCATTTTTTCG AAAAGCATTAAATTTTCAGTTTCAAAATCACATTTAATTGAGTATAGTGTTTTTTTTTGTTTTTC ATAAATATCAGTGAATTAACTGGAAACATGCAAAAGCTCGATTTT Found at i:7308793 original size:7 final size:7 Alignment explanation
Indices: 7308783--7308796 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 7308773 ATTTAGAAAA 7308783 AATGAAT 1 AATGAAT 7308790 AATGAAT 1 AATGAAT 7308797 TGTTTCAGTG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29 Consensus pattern (7 bp): AATGAAT Left flanking sequence: Indices 7308283 -- 7308782 TATTCTTCTTAAACCAAAGCATGCAACATATATGGATATAATATATATAAGAGCTTTTATTGTTA ATGTTGCTGATAGCGAATGTACTGATTTGTATATAAAATGAAAATTATTTTTAAAGTTCATAACG TTTTCAAAATATTGATTTCTGTTGTTGTATTCTCGCATAATTAAAATTATTAAACGGTAGATTAA TTTTAGAGTGATTTTCTGGGTTTTTAGTATCCACAAATTATTCTAGAGAATAATTCGTGTGAGGA TTTTATCTATTTTTTGTTTCCACGCGGCTTTGAGCATATTTTTTATCAGCCGATTGAGCTTTCGT TACGAAATTGTGCATACATGTTTCCTGCAACTTTCGTCAAATTTTGCTAAGAAGAGCTTTGTCAA CTATAATATGCCCTTCTTATCGCTGTAAATTCTAAGGTTCCATTCAACGTAAACTCCAATAACAA ATGATTGAAGCAAGAATAGAGAACAAAAATTAAAAATTTAGAAAA Right flanking sequence: Indices 7308797 -- 7309296 TGTTTCAGTGACTTGATAAAAAATTAGCCGGTGTGGGTAAACCCACATGTTTAGTTGACGAAGCT CTTTTTAGCGGAAAGCTTGCCGAAATTTTTTTTTTAATTTTCCACATTCAGACAATTTTTGAGCA CTTTCTCGGTTGTTACAATTCAAATAAGTCATTTCGTTAGTTTTGGATAAAATCTGAAATACTAC ACTGCAGATTTCCTTTTTTTTCCAAGAAATATTTTCAAAAAATCTCCCATAATGTTTAACTATTT TAAATGTTTTTTCTGATATCTTAAAAATTGAGAGCAAAAGAGCAAAAAGTTGAAAATTCGACCGA CCTTGCGATTTTTGATAATTTCACCGAAAATTCTCATTTTTTCGAAAAGCATTAAATTTTCAGTT TCAAAATCACATTTAATTGAGTATAGTGTTTTTTTTTGTTTTTCATAAATATCAGTGAATTAACT GGAAACATGCAAAAGCTCGATTTTTAACATTTTATGACCTCCCGT Found at i:7309100 original size:8 final size:8 Alignment explanation
Indices: 7309087--7309103 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 7309077 TTAAAAATTG 7309087 AGAGCAAA 1 AGAGCAAA 7309095 AGAGCAAA 1 AGAGCAAA 7309103 A 1 A 7309104 AGTTGAAAAT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.65, C:0.12, G:0.24, T:0.00 Consensus pattern (8 bp): AGAGCAAA Left flanking sequence: Indices 7308587 -- 7309086 ATCAGCCGATTGAGCTTTCGTTACGAAATTGTGCATACATGTTTCCTGCAACTTTCGTCAAATTT TGCTAAGAAGAGCTTTGTCAACTATAATATGCCCTTCTTATCGCTGTAAATTCTAAGGTTCCATT CAACGTAAACTCCAATAACAAATGATTGAAGCAAGAATAGAGAACAAAAATTAAAAATTTAGAAA AAATGAATAATGAATTGTTTCAGTGACTTGATAAAAAATTAGCCGGTGTGGGTAAACCCACATGT TTAGTTGACGAAGCTCTTTTTAGCGGAAAGCTTGCCGAAATTTTTTTTTTAATTTTCCACATTCA GACAATTTTTGAGCACTTTCTCGGTTGTTACAATTCAAATAAGTCATTTCGTTAGTTTTGGATAA AATCTGAAATACTACACTGCAGATTTCCTTTTTTTTCCAAGAAATATTTTCAAAAAATCTCCCAT AATGTTTAACTATTTTAAATGTTTTTTCTGATATCTTAAAAATTG Right flanking sequence: Indices 7309104 -- 7309603 AGTTGAAAATTCGACCGACCTTGCGATTTTTGATAATTTCACCGAAAATTCTCATTTTTTCGAAA AGCATTAAATTTTCAGTTTCAAAATCACATTTAATTGAGTATAGTGTTTTTTTTTGTTTTTCATA AATATCAGTGAATTAACTGGAAACATGCAAAAGCTCGATTTTTAACATTTTATGACCTCCCGTCA TGAAGCTGCCGATAGGGATTTTTTTTCAAACTTTCAAATATGTTTTTGCAGATACAGAGGTTTAT TGGTATGCTGAATCCGATTACAATATTAGTTTCCCATGAAAAAATTTAAAAATATCACAAACCGA TTAAATGGAAAGGAGGGGGGGGGGTCCCCTAGCAGTTGGGCGCCCTGTAGAAGAAATAAGGACTA TTTAGTGTACACTTTCGAATGACACACGTTTCGTTTTGAAGTCTGACGTTAAAATAAAAATCTTT ATTTTCAAGGAATTAATGAAATATTTACAAGTTCACGTTTCATGA Found at i:7315095 original size:7 final size:7 Alignment explanation
Indices: 7315083--7315096 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 7315073 TTGAAAAAAG 7315083 TCGGCTC 1 TCGGCTC 7315090 TCGGCTC 1 TCGGCTC 7315097 GCACCAAGAG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.43, G:0.29, T:0.29 Consensus pattern (7 bp): TCGGCTC Left flanking sequence: Indices 7314583 -- 7315082 GTACCTGGAAATAATAGTTTATAGGAATTATAGAAAGTTCCAGAACTCTCACCGTGCTTCTTGTT TTCTTTTGTTACTCTGAACACTGTCCTCAACGTTTCTATTTGCATTGCGGATATAAATGAATACG GACACATAGCAAAATGTGGATATGGATGTGCAAAAGACATCGTAGACTAACAAAATGTCGTTAGA GTATGAATGAACTCCCTCAATGCTCAAAAACATGTAGGACATGATATCGATGTCAACAATTAAAC TGAAAGTAACTTTTTGTTGGCAATAGTAGACTAAGGTTATCTTACACACAACACGGTAAAAAGTA TTGAATACATGCAGCAGAAAATGAAGTCAAAGTTATAAGAATGATGAAGATAAAGATTGTTCGTT GAAATGTGAAAATATTGTTCTTGTTCAGAGTAATTACGACAAATCTGGAAAGTAGAGTATTGTAT ACCGAAAAATGATTTGAACCAGTGCTGTGCGGCTCTTGAAAAAAG Right flanking sequence: Indices 7315097 -- 7315596 GCACCAAGAGCCGAAAAAACCCCCAAAATGTCGGCTCTCAGCTCTCGCTGAGAGCCGAGAGCCGC ACAGCACTGATTTGGCCCCAGAGAAAAAATTTTCCAAATCAAAAGTCTGCTCTAAATCCTATGCG TTAAATCTACTTATTGTCATTCTTGTACAATTTATACTTGTGGCATGTGTCCAATGCTAGAATGT CCTGGTGAGACCCATCGTTGTGAGACCCATAGGTCAGCGGCTGGTTTTGCAATATTAAATCGCTG CCTAAGAGTTTGAAATTACTGCTATTTTTTGTGAGAATCAAACGCGAAATATGCACTGAAAATTT CGAGCTTATAAGTGAGAACTAGTATTATTAATCAAAAAATTTTCTGAAAGGTAGTATTTCATTTC ATATGCAGTAGTTTTTCACGTTCTATTATTATTGCAAATGTTAAAAAAATAGTGTGCGTGGCAAA ATGGTTACCTATTGAGTGCCATCACAGGCTGTACAAGACTTTCCA Found at i:7315156 original size:7 final size:7 Alignment explanation
Indices: 7315146--7315160 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 7315136 AGCTCTCGCT 7315146 GAGAGCC 1 GAGAGCC 7315153 GAGAGCC 1 GAGAGCC 7315160 G 1 G 7315161 CACAGCACTG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.27, C:0.27, G:0.47, T:0.00 Consensus pattern (7 bp): GAGAGCC Left flanking sequence: Indices 7314646 -- 7315145 TTTTCTTTTGTTACTCTGAACACTGTCCTCAACGTTTCTATTTGCATTGCGGATATAAATGAATA CGGACACATAGCAAAATGTGGATATGGATGTGCAAAAGACATCGTAGACTAACAAAATGTCGTTA GAGTATGAATGAACTCCCTCAATGCTCAAAAACATGTAGGACATGATATCGATGTCAACAATTAA ACTGAAAGTAACTTTTTGTTGGCAATAGTAGACTAAGGTTATCTTACACACAACACGGTAAAAAG TATTGAATACATGCAGCAGAAAATGAAGTCAAAGTTATAAGAATGATGAAGATAAAGATTGTTCG TTGAAATGTGAAAATATTGTTCTTGTTCAGAGTAATTACGACAAATCTGGAAAGTAGAGTATTGT ATACCGAAAAATGATTTGAACCAGTGCTGTGCGGCTCTTGAAAAAAGTCGGCTCTCGGCTCGCAC CAAGAGCCGAAAAAACCCCCAAAATGTCGGCTCTCAGCTCTCGCT Right flanking sequence: Indices 7315161 -- 7315660 CACAGCACTGATTTGGCCCCAGAGAAAAAATTTTCCAAATCAAAAGTCTGCTCTAAATCCTATGC GTTAAATCTACTTATTGTCATTCTTGTACAATTTATACTTGTGGCATGTGTCCAATGCTAGAATG TCCTGGTGAGACCCATCGTTGTGAGACCCATAGGTCAGCGGCTGGTTTTGCAATATTAAATCGCT GCCTAAGAGTTTGAAATTACTGCTATTTTTTGTGAGAATCAAACGCGAAATATGCACTGAAAATT TCGAGCTTATAAGTGAGAACTAGTATTATTAATCAAAAAATTTTCTGAAAGGTAGTATTTCATTT CATATGCAGTAGTTTTTCACGTTCTATTATTATTGCAAATGTTAAAAAAATAGTGTGCGTGGCAA AATGGTTACCTATTGAGTGCCATCACAGGCTGTACAAGACTTTCCATAAACCACCCGTTCATGTG AATCCATCCAAAAAACACACTCAAATTGTTAATTCTTGCTCCTGT Found at i:7316463 original size:7 final size:7 Alignment explanation
Indices: 7316453--7316466 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 7316443 TAATTTAAAA 7316453 AAAAAGT 1 AAAAAGT 7316460 AAAAAGT 1 AAAAAGT 7316467 GTACAGTTTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14 Consensus pattern (7 bp): AAAAAGT Left flanking sequence: Indices 7315953 -- 7316452 CACGTTATTAGATTGAATGAGAACACGACACTAGAAAAAATAATACCTCAAAAATTAAATACATT CATATGTAGTTACCAAAAACTACAAAACATACGTTATTTTTCAAAACAAGAAAATCATATTCTTA ACTACATACTTTTTATTACCATACTCTTATTTAAATGAAAAATTAGTACACAGCTTGTGAGTTGC GCAGATAAATTGATATTCGAAACATTCTACCTTGAGACCGGGAAAACAAAGTACTACGTAGTGCA ATTTTGGAAATCACGTGGGATTTTGAGTAACTAGAAAAAAAAAGCAAGTAAAACCAAAACAACAT GGAGGTTTTCGATGAAGTGGGAGAAGAGAGTTCCTGGAATTCGTAAAACATCTATTGCCTTGCTA TAAATTGACAAAAACATGATTTCTGTTCAATATCAAACCCAAATTCATTCATGGCACAGGGCGGA AATGTGTACTGTCAAGAAATAGGTCTGTTACATGTTAATTTAAAA Right flanking sequence: Indices 7316467 -- 7316966 GTACAGTTTTTGGTACTGTTCAAAAAAGTTATTGGATTTGAATAGTTTTTGAGAAGTCTTCGAAA CGGAACCATGTGGCGTATCAGAAACGGAATGAATATCTTAACAAATAATCACAAATTTTAAAATT TTCTTAAAAATCAATCGTCAATTTTGAAATATGAACAAAACATATGAAAATCCGAATACAATTTC GATATGAGCATATTTTATTGAATGTTAAATCACAATTTTACATGGTAAATTACATATGTACAATA CAATCAATGCTTATTTGTTCTGGTCTTTTTTGTCTTTTCTGTAATCCACACAACCATTGCAACTA CAAAATTCTTTTCCGATTCCACAGTATCCACCATTTGAGCAACAATACTTAGTATCATCATCGGG ATTGCAAATTGGCATCTGAAAAGTTTGATAATTATTTAAATTTTATCAATAAATCTACTTTTCCA TTGATTTTTTCAATATCTTTTCCGCATCTTCCCCTCTTTCCATCT Found at