TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_V Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 20922231 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:11941946 original size:7 final size:7 Alignment explanation
Indices: 11941934--11941947 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11941924 AGCCTCAAGG 11941934 TTTCTAA 1 TTTCTAA 11941941 TTTCTAA 1 TTTCTAA 11941948 CAAAGAGGCT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57 Consensus pattern (7 bp): TTTCTAA Left flanking sequence: Indices 11941434 -- 11941933 AAAATTTACAGAACAGTTCATCCGAAAATAGTCACCTACAAAATTAGAATGACGATGTAGAACTC TGCTCTGTAATTGAAAATTACAGCGAAAAATGATAATTTTCGAAAAGTGAGCATTTTAATTCAAA GACTATAACAGTCTATGATTTGATTTGTTGGAGGTGAGCCTCAAGCTAAACTATTTCTAGTTTTG GCAAAACTTTTTAACTGGTAAACGGTTTTCAGAGCTAACAATTTTTAAAGCACAAGTCATCAAAA AAGTAAGTAGAACTACGTGTTATGCTTTGGCACATGTGTTAATTCTTATCGAATTCGTGAGTCTT GAAAAATCATGTTTCTATGAAAAAGAGTGAGTACAATATCAAATTCAACACCAGTGTCAAAAACC AATATCAAACACTGAAAAAGTCGGAAAAATCGGAAAATTAGAAAAATGAAAGGCAGAATGAGTGA AAGCTCACCGAGCACTGGAATAGTGCAACGAAATTAGCCTCAAGG Right flanking sequence: Indices 11941948 -- 11942447 CAAAGAGGCTTTTAAGGATTTCAAGAACAGTGGAACATGAGACATCAGAATTCTGATGACTTAGA AAAAAGGAACCGGTTAACCCTACATTTGAGACTGAACACACCCACTTCCCACGTTTCGATAAGAA AAAAAAATGAAAACGACGTCTTAAGAAGAATGGGTTTCGAATTTCAGTCAAAACATTCATATTCA ATATGATATCCAAATATCCTGCTCCTCCTCTTCACACAGTAAACGATCGTTCTCGTTCTCTCTCA GTTTTTAGGATGAGAGAAGGACAAACACAAACACGTACTACGTCAGAAAATGTAGAAAATGACCA AGAAAACCGAGAAGAAAGATAATATGAAGGATGAATCGGAAAGAAAACAGAAGGAGAGCAACGAT ATGATGAGATTGGAAGACAAGAATGAAACAGAAGAGAGGACGCCCACCACTTGAGCCCTTGTTTC AAATGGTGCTTAACACATGCATCTTCCCGATATGGACGACGATGG Found at i:11943255 original size:7 final size:7 Alignment explanation
Indices: 11943243--11943272 Score: 51 Period size: 7 Copynumber: 4.1 Consensus size: 7 11943233 TGCGAAGTAT 11943243 AGAAACA 1 AGAAACA 11943250 AGAAACA 1 AGAAACA 11943257 AGAAACA 1 AGAAACA 11943264 TAGAAACA 1 -AGAAACA 11943272 A 1 A 11943273 CGTAGATATA Statistics Matches: 22, Mismatches: 0, Indels: 2 0.92 0.00 0.08 Matches are distributed among these distances: 7 15 0.68 8 7 0.32 ACGTcount: A:0.70, C:0.13, G:0.13, T:0.03 Consensus pattern (7 bp): AGAAACA Left flanking sequence: Indices 11942743 -- 11943242 TATTATCGTGAAAGACAATGACAGTAAACTGATCTTTATGTAATGTTACATGAATGTCTCTAATA AATATTGGTTATTTAAAAAAATTTTGATGTGCTCTTTGCATCAGCAATCGGCTCAGTAACTCTTT AAAAAATGTTGTCCAGAATTTAGCATGCGTGGGAAGATATTAGCTATGTTTCAAATCTATGCAAA ATGAACCAATATTTCAATGACACAATTTAACATATTTCATATTAGGAAAATTTTGAACAAACGTA GCATAAGTTACTCTTTTTTTTCAAATGTTTGAAAGTTCAAAACTGGTCGCTCACATGTTATCAAA AGTACAGACGAAAAGAACGAAAAAAAGCGAGTTGTTGCAGTGATTCTCATCAAAATCGTATAGAT GTCCGGATATTAGCCCAACTCTTTATCGATTTTTCTTGTATCCAGGAGATTTTTGGTTTAATTTC GATAGACCGATAATAGAGGAGACGTGTTGATTGTATGCGAAGTAT Right flanking sequence: Indices 11943273 -- 11943772 CGTAGATATAATTACACAAAAATTAAAAAATAGCTCTGCCCACTGGGCTTTCTGCAGTTTTTTTT TTGGCAAAGAGGAACAGATTAAGATAATATCACACATTACAGTCACCTTCATAAAAATTAAACTA AAAAATGCGATGTTTTCTTCACTCAAAAACTTTCTAACTACAGACAATCTCAATTGGAAGTTGAA ACTACTTTAGTACTAACGGAACCAGACACTACTAAAAGTTCAAAACCACACCTATGACTAAAAGC CCACACTTTTAAAGGTTTACATTTTAAATGAACATGAAATCATCTGTTGCACAAAATATGCTTTG AACATCCTCTAATACTCTACTAATATGGTTTAGTCATTGTTTATGTTTGATTTAAGTTTTGAAGA TTTCTATGGTTAATAGCAAAACTGATAAACTTGAACTATTAAAATGGGAAGTTTACATTTGAAAA AGGAACCATGATTCACTGTTTTAGTCACAAGAATGGTTATTTTTG Found at i:11943270 original size:15 final size:14 Alignment explanation
Indices: 11943243--11943272 Score: 51 Period size: 15 Copynumber: 2.1 Consensus size: 14 11943233 TGCGAAGTAT 11943243 AGAAACAAGAAACA 1 AGAAACAAGAAACA 11943257 AGAAACATAGAAACA 1 AGAAACA-AGAAACA 11943272 A 1 A 11943273 CGTAGATATA Statistics Matches: 15, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 14 7 0.47 15 8 0.53 ACGTcount: A:0.70, C:0.13, G:0.13, T:0.03 Consensus pattern (14 bp): AGAAACAAGAAACA Left flanking sequence: Indices 11942743 -- 11943242 TATTATCGTGAAAGACAATGACAGTAAACTGATCTTTATGTAATGTTACATGAATGTCTCTAATA AATATTGGTTATTTAAAAAAATTTTGATGTGCTCTTTGCATCAGCAATCGGCTCAGTAACTCTTT AAAAAATGTTGTCCAGAATTTAGCATGCGTGGGAAGATATTAGCTATGTTTCAAATCTATGCAAA ATGAACCAATATTTCAATGACACAATTTAACATATTTCATATTAGGAAAATTTTGAACAAACGTA GCATAAGTTACTCTTTTTTTTCAAATGTTTGAAAGTTCAAAACTGGTCGCTCACATGTTATCAAA AGTACAGACGAAAAGAACGAAAAAAAGCGAGTTGTTGCAGTGATTCTCATCAAAATCGTATAGAT GTCCGGATATTAGCCCAACTCTTTATCGATTTTTCTTGTATCCAGGAGATTTTTGGTTTAATTTC GATAGACCGATAATAGAGGAGACGTGTTGATTGTATGCGAAGTAT Right flanking sequence: Indices 11943273 -- 11943772 CGTAGATATAATTACACAAAAATTAAAAAATAGCTCTGCCCACTGGGCTTTCTGCAGTTTTTTTT TTGGCAAAGAGGAACAGATTAAGATAATATCACACATTACAGTCACCTTCATAAAAATTAAACTA AAAAATGCGATGTTTTCTTCACTCAAAAACTTTCTAACTACAGACAATCTCAATTGGAAGTTGAA ACTACTTTAGTACTAACGGAACCAGACACTACTAAAAGTTCAAAACCACACCTATGACTAAAAGC CCACACTTTTAAAGGTTTACATTTTAAATGAACATGAAATCATCTGTTGCACAAAATATGCTTTG AACATCCTCTAATACTCTACTAATATGGTTTAGTCATTGTTTATGTTTGATTTAAGTTTTGAAGA TTTCTATGGTTAATAGCAAAACTGATAAACTTGAACTATTAAAATGGGAAGTTTACATTTGAAAA AGGAACCATGATTCACTGTTTTAGTCACAAGAATGGTTATTTTTG Found at i:11943819 original size:8 final size:8 Alignment explanation
Indices: 11943806--11943825 Score: 33 Period size: 8 Copynumber: 2.5 Consensus size: 8 11943796 CAAATTATTT 11943806 TTTAAAAA 1 TTTAAAAA 11943814 TTTAAAAA 1 TTTAAAAA * 11943822 CTTA 1 TTTA 11943826 TTAACCAACT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40 Consensus pattern (8 bp): TTTAAAAA Left flanking sequence: Indices 11943306 -- 11943805 CTCTGCCCACTGGGCTTTCTGCAGTTTTTTTTTTGGCAAAGAGGAACAGATTAAGATAATATCAC ACATTACAGTCACCTTCATAAAAATTAAACTAAAAAATGCGATGTTTTCTTCACTCAAAAACTTT CTAACTACAGACAATCTCAATTGGAAGTTGAAACTACTTTAGTACTAACGGAACCAGACACTACT AAAAGTTCAAAACCACACCTATGACTAAAAGCCCACACTTTTAAAGGTTTACATTTTAAATGAAC ATGAAATCATCTGTTGCACAAAATATGCTTTGAACATCCTCTAATACTCTACTAATATGGTTTAG TCATTGTTTATGTTTGATTTAAGTTTTGAAGATTTCTATGGTTAATAGCAAAACTGATAAACTTG AACTATTAAAATGGGAAGTTTACATTTGAAAAAGGAACCATGATTCACTGTTTTAGTCACAAGAA TGGTTATTTTTGGAAGATCAGTTGCGAAAACAACACAAATTATTT Right flanking sequence: Indices 11943826 -- 11944325 TTAACCAACTGATATTTAAAATTTTAGAATATTGGGAGGTTAACACACACGAAGCTGGCAAAAAA AACACAATAGAATATCTGAAAATAAATTTTTCAATCTTTTAACATACATCATATTTGAGACTGAT GTCTATAAAATACTACGGTTTACTGATAAAATACATTAAGTAATGCTTCTTTGATTTGATGTTCA TTTTTCTCAAAAATAGGTCAATTTTGCATTATTACACAATTTACACGTTTCAAGAATTAATGAAT AATCCCGGAAACCATATATTCGGTCTTTGAATTCCCAAAAAAAAAACGATGATACAGAAGATGTA ATGCTCACGGGAGAGTCAAAACAAGGACAACAGAAAACAATAGATGAGTGAAATGCAAAATATTG TTGAAATGACCACTATTAGATGAAATATTATAAACAATGGTCAACTGTACTAGAGACCCGACTAG ATAATACTCATTTAGTTGATGATGCTGAAAATGGGAAGATTAGAA Found at i:11946747 original size:8 final size:8 Alignment explanation
Indices: 11946734--11946750 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 11946724 CGAGTTGGTC 11946734 AAGTCGGA 1 AAGTCGGA 11946742 AAGTCGGA 1 AAGTCGGA 11946750 A 1 A 11946751 GAAAGCCAAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.41, C:0.12, G:0.35, T:0.12 Consensus pattern (8 bp): AAGTCGGA Left flanking sequence: Indices 11946234 -- 11946733 CAATTTTAAAGTGCAAATTTGAAAGTACATTTTGATAGTAACTGAGAATTGTCTATTTTTATGAA ATGCATTCCATTCAACTCATATTAAAATAATTTCAGTGAAACTTGCACCGGGGACATCTGCAATG GGTTCGGAGAATGCAGAGTCCTGAATCCCGGAATGCTGATTGAAAGATTCGAGTGCATGTGTGAT CTCTGGCACACTGGACAACTATGCCAGTATGATGTTCCCTTACCAATTGCGATCACTATCACCAC TACATTGTTCACCTGGCTCATTTTGTTCTTCTTTTGGTACTCTTCGCGTCGTTTTGAGTATGTTT CATCTGATGATTACCTTTATTAGAACATTATTTTTTTAGGAAGAAGAAGATTCACTTTCCAAGTA GACGACGCCGTTTTGTGGATTATCTCATTAATGCACAGCGATCGGAAAAATTGGAACTAAATTCT CAACAACAACTTGGAAATAGACACTCGGGATCTAGCGAGTTGGTC Right flanking sequence: Indices 11946751 -- 11947250 GAAAGCCAAAAGTTCTAACCAGAAAGAAAAAGTCAAGCCAGAGAAAAGAGGAAGAGCAACAGCAA CCACTGGTGCCGGACCAACTATAGATCAGAGCTTGAAGGGCCCCACAGGAACTACTATGGCATCT GAAAGAGGAATGACAATGACTCAGACAATCCAAAAAGAAAAATCAATTAAAAAGAAGAAATCGGA AAAAGATGAAAGAAAGAGAGCAAAAGAAGTGGGAAATGAAGAAGCTGCAGCTGACAATCAGACGG TTACTCAAGGAAATGATACGACAACTACACAAGGACCATCTTCCATGTTTCCTGCCGATTTATCC AAGAAACACAGATTGGGATTGCAAAAAGTTAAGGAGCGTGCAGTGGAAGTGCCTGAAAAGAAGAA AACTAAAAATAACGAGTGAAATAAGTTTTGTGATATCAATTGTCTCGATAAATCATTTTTGTGTA GAATACCCTATTAGTTTTAAATAAATTAGTTTTATGAATTTTTCA Found at i:11948319 original size:7 final size:7 Alignment explanation
Indices: 11948307--11948320 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11948297 TGAAAATTTT 11948307 TTTTTCG 1 TTTTTCG 11948314 TTTTTCG 1 TTTTTCG 11948321 AAATGGTTGC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.14, G:0.14, T:0.71 Consensus pattern (7 bp): TTTTTCG Left flanking sequence: Indices 11947807 -- 11948306 GTATATGAAGCGTGCCGGCACATTCTAAGACTGTATGTACTTGGTGTGTCACCGGACAACGGTTA ATAATAATCCGATTAGGATAATAGTAAGATTGTTGAAGATGGCCGCAGCGGTCACACTTCGGATA AATCTTGAGTGGATTTTAATAAACATCCGTTTATGGAATAGACCTATAAAAAACATCTGGAGCTA CGGTGCAGTTTACCATAAATGGGTATACTTTGATACCGTATAGCTAAATTTTTGGTTTATAATCT CTAACAGAACTGTACATTCAACAACATCGCATTAGTACACTATGGTGGAGGCTGATGATTCGTTC TGCAAAGTAGTGTTTTGGTTTTGAACAAATTTTTTCTCCAAGATTCTCAAATCAAAATTTGAAAA AAGTTTCGAATTTTTTTTGAATTATGACACCTAGACAGACCGACAATATTAGTCTTGAACTCATT TTTGAGATAAAAAAACTCAAAAATGAACCTTTCAGTGAAAATTTT Right flanking sequence: Indices 11948321 -- 11948820 AAATGGTTGCTTCTCAAAAAAAAGTGTGTGTCCATTTGATTTCAAATTTAGTGGGCCGACTTTAA TACTCCTTCTGTTTACTTGTTTTCCCCTGAATTCCTTCCAAATATTCTTCAAAACCTAAAGCTTC TCGCTTCTCCCTTTCTTCACGGCTCCATAAACACGACACAATGTTTTGATTGATTTTGCCACGTT GCCGTGACCGACTCAGTGAGCAGTAACAATGAACAAGTGTGTTCGGGAAGCATCGTCGGTGTCCT TTACTCGTTCCTGCCAGCTGTCTGCTCTCCGTGCTTTTCCGACTCGTTATGGAGTGAGGAGCAAC AATTTATGACCTCAATACTCGTCTCAATGTCATCGTTTTCCTGGATGTGAGTAGATGTTAATTAT CGTCACCTGACCCCTTAAAGAACATCAAATCTCCGATTGTTTTGAATCCTCGCGGAAAACCTTGT CGGTGTGGCTTTTGAAGCAACCGGAGGTGACCTCAAAAAGATTTA Found at i:11948458 original size:7 final size:7 Alignment explanation
Indices: 11948446--11948463 Score: 29 Period size: 7 Copynumber: 2.6 Consensus size: 7 11948436 AAAACCTAAA 11948446 GCTTCTC 1 GCTTCTC 11948453 GCTTCTC 1 GCTTCTC * 11948460 CCTT 1 GCTT 11948464 TCTTCACGGC Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.00, C:0.44, G:0.11, T:0.44 Consensus pattern (7 bp): GCTTCTC Left flanking sequence: Indices 11947946 -- 11948445 TGGATTTTAATAAACATCCGTTTATGGAATAGACCTATAAAAAACATCTGGAGCTACGGTGCAGT TTACCATAAATGGGTATACTTTGATACCGTATAGCTAAATTTTTGGTTTATAATCTCTAACAGAA CTGTACATTCAACAACATCGCATTAGTACACTATGGTGGAGGCTGATGATTCGTTCTGCAAAGTA GTGTTTTGGTTTTGAACAAATTTTTTCTCCAAGATTCTCAAATCAAAATTTGAAAAAAGTTTCGA ATTTTTTTTGAATTATGACACCTAGACAGACCGACAATATTAGTCTTGAACTCATTTTTGAGATA AAAAAACTCAAAAATGAACCTTTCAGTGAAAATTTTTTTTTCGTTTTTCGAAATGGTTGCTTCTC AAAAAAAAGTGTGTGTCCATTTGATTTCAAATTTAGTGGGCCGACTTTAATACTCCTTCTGTTTA CTTGTTTTCCCCTGAATTCCTTCCAAATATTCTTCAAAACCTAAA Right flanking sequence: Indices 11948464 -- 11948963 TCTTCACGGCTCCATAAACACGACACAATGTTTTGATTGATTTTGCCACGTTGCCGTGACCGACT CAGTGAGCAGTAACAATGAACAAGTGTGTTCGGGAAGCATCGTCGGTGTCCTTTACTCGTTCCTG CCAGCTGTCTGCTCTCCGTGCTTTTCCGACTCGTTATGGAGTGAGGAGCAACAATTTATGACCTC AATACTCGTCTCAATGTCATCGTTTTCCTGGATGTGAGTAGATGTTAATTATCGTCACCTGACCC CTTAAAGAACATCAAATCTCCGATTGTTTTGAATCCTCGCGGAAAACCTTGTCGGTGTGGCTTTT GAAGCAACCGGAGGTGACCTCAAAAAGATTTATATTCTTAGAGCAACAGGTGCTCATCGTGTAAA AGATGCGTTGCATCACTTCACTTTCTCATGTTCATTTCGAACTGGATTGTCACAATTAGGATTAG CAGCTGCTTTTGCTTTTTACCACTCATCATAAAATTTTCATCAAA Found at i:11949546 original size:9 final size:9 Alignment explanation
Indices: 11949532--11949550 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 11949522 GTGTTCAGTT 11949532 TTTCAAAAC 1 TTTCAAAAC * 11949541 TTTCAACAC 1 TTTCAAAAC 11949550 T 1 T 11949551 GACCAACCTA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.37, C:0.26, G:0.00, T:0.37 Consensus pattern (9 bp): TTTCAAAAC Left flanking sequence: Indices 11949032 -- 11949531 TTCATTTACCCCCGATTTTTCCCTCCGGCTATGAGATCTTCTCATCGTTTTGAATGTTTGTTATT CTCTTGTTTTCTATTATTTGTTCTTGCATGATCTCTTCTTCCTTTTTTTCATTTTCCTACCCTAG ACTTTTGTAGGAAATTTACATAACACACTTTTTGAACAACAACTTGTAATTTTTTTTTTTAATTT TAGAAAATTTTACGGGGATGTACCAGGCGTGTAAAACTGTAGAGTTTTCGAGAAGATTTCAGTAC TGTCACAGATTTAACTCTTCAAAATGTTTTAAAAAAATTAAAAAGAACCTTAAATTGTTTGATAT TTCATTTACATTCTTCACAATTATTATAACGAAAAAAACAAATGATGAGCAAAGACAACTCACGA AGTATTTTATTTGCCTGTAAATAAAACATTTCAATTTTTAGTAGCGTTTTCCATCTATGCTGAAC TAATCTACAGATTCATCCAATTTCACTTTCCTTCAGTGTTCAGTT Right flanking sequence: Indices 11949551 -- 11950050 GACCAACCTAATTGCCACTTGTTAATGATGATTCGAACATTTTGACAGATGGCGCCTAGTGAATT CACAAATTGAGTTATGAGCCTTTCCTTTCGATGCTCATTTTCGTCTCCAGAGAATTCCAAGTACA CAGACACCTAATTTGTGAATTCATTTGGCTTAACCCACCCCACATGACTTACTTTCGTCGTTATC AGTAGCACATTTTATTAAAAACAGGCAGAAGTCGAATATGTATGCGTGTAGTAGTAATTATACAT TTTTAAACTTTTGGTTCTTTTCGTTTTGAATTTTTGAAAAATGTTTGAAAATTCGCCCAACAATT TTCTGGAATTCCCCATCTCTTTTATTTTTTGAATTGTTAAAATGATGAAGCATTCTTTTCGTTTC TGTACCTCAAAACAATTAATTTTTCATTGTTTCAAAGCTTCATAACCATATAATTACCATCCTCA TTAACACTCTCCTTACATTCTCCCTCAAAAATTCCTTGCGCGTGA Found at i:11950454 original size:10 final size:10 Alignment explanation
Indices: 11950441--11950461 Score: 35 Period size: 10 Copynumber: 2.1 Consensus size: 10 11950431 CTTGATTTCA 11950441 ATTGAAATTC 1 ATTGAAATTC * 11950451 ATTGGAATTC 1 ATTGAAATTC 11950461 A 1 A 11950462 AATGAGGTCA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38 Consensus pattern (10 bp): ATTGAAATTC Left flanking sequence: Indices 11949941 -- 11950440 TGTACCTCAAAACAATTAATTTTTCATTGTTTCAAAGCTTCATAACCATATAATTACCATCCTCA TTAACACTCTCCTTACATTCTCCCTCAAAAATTCCTTGCGCGTGAACAGGTGTGAGGTTTAACTT GTCTAGTTCTACCCCGTATTATTATAATTTCTCACCTCATTCCACTGTTTCTTCTTCTTCATTGA CTGCTAACTAGTCAGTTCCGTGTTCTTCACACCTGAACTTAATCATAGGATTAAAAGAACAGGCA TAGAATAGACTAGAAAACGTACATTTTTCTGTGTCGTACCCTCTGTCAGCCAGCTATTGTATTCT CATCTAATGATAGGGTGTTTTGAAATAAAAAGGAGCAGTCAATTGGTTTTCGGGCATGCACACCA TATGCTCACTGATTGACACCTTCGACATGTTGGAGACATCGGATTGATGAGTATGACGTTCCTGG AGACATGAAAATAATAGAAAAAAGATGAGGAAGACCTTGATTTCA Right flanking sequence: Indices 11950462 -- 11950961 AATGAGGTCAATTTGAGTAATTAAGTAGAATCAATGAGTTCAAATCGGAGAAAACGATAAGGAAT ATCTATTTTCATTTATCTATCACTTGTTTTTGGTTTTTCAAAAACTAAAATTTTATTTTCATTTT TCAAAACAGTGCAAGGTACTTTTTTTCAGTGAAACTTAAAAAATAGTTGATTTCAAAGATGAAGT CCTCTTGTCTAAATATTTCTTTTGAAAAATGGAGCTTTTTGAAAGTTTTCAAGCATTACTTGCAG GTTCGCACACTCAATTTTTTTGGTTGATTTCCAAAATTATTAGCGGGAATAACTGGATAATTACC ACTTTTTGACTGAAAATAAAAAAAATAAAAACAGTTTTTTGATAAATTTTACTCTGATATTCGGA TATTTCAGCATTATATGTATGAGTGAATTTAATTAATTCCCTCTCTGGTGCTACGAGGAAAAAGT TTTAAAAACATTTTGGCATAACTTTTGGCATAAAGTAATGAGTAG Found at i:11950816 original size:8 final size:9 Alignment explanation
Indices: 11950799--11950817 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 11950789 TTTTTGACTG 11950799 AAAATAAAA 1 AAAATAAAA 11950808 AAAATAAAA 1 AAAATAAAA 11950817 A 1 A 11950818 CAGTTTTTTG Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11 Consensus pattern (9 bp): AAAATAAAA Left flanking sequence: Indices 11950299 -- 11950798 AGCAGTCAATTGGTTTTCGGGCATGCACACCATATGCTCACTGATTGACACCTTCGACATGTTGG AGACATCGGATTGATGAGTATGACGTTCCTGGAGACATGAAAATAATAGAAAAAAGATGAGGAAG ACCTTGATTTCAATTGAAATTCATTGGAATTCAAATGAGGTCAATTTGAGTAATTAAGTAGAATC AATGAGTTCAAATCGGAGAAAACGATAAGGAATATCTATTTTCATTTATCTATCACTTGTTTTTG GTTTTTCAAAAACTAAAATTTTATTTTCATTTTTCAAAACAGTGCAAGGTACTTTTTTTCAGTGA AACTTAAAAAATAGTTGATTTCAAAGATGAAGTCCTCTTGTCTAAATATTTCTTTTGAAAAATGG AGCTTTTTGAAAGTTTTCAAGCATTACTTGCAGGTTCGCACACTCAATTTTTTTGGTTGATTTCC AAAATTATTAGCGGGAATAACTGGATAATTACCACTTTTTGACTG Right flanking sequence: Indices 11950818 -- 11951317 CAGTTTTTTGATAAATTTTACTCTGATATTCGGATATTTCAGCATTATATGTATGAGTGAATTTA ATTAATTCCCTCTCTGGTGCTACGAGGAAAAAGTTTTAAAAACATTTTGGCATAACTTTTGGCAT AAAGTAATGAGTAGTAATATTTAACAAATAACTTCTCAATCTCTCACCTACTTCAAATTCTGTCA TTGGCACATTTTTATAACAATTATTATTTATGACGCGTCAACTTAATTCACACTTTCACACCTAC CTGACTATGAGAGGCAAATGACGTGCCACCTGTATAGAATATAACCAGTTGACCTATTGATTCCA TACCTTCTAGAAATTGGACCCTAATTGAGTAATTGATTTGCCTAACTCATTATAAAAATCTCTCA TGTATCCGAGATATCTAACTGATTGTCTACTGTCTGCCCTAAGTTTCAATTCTTTCAGGATATTT GTGGAAACAATTTGAAGTGGTACGTCTCTTCCTTGACTCACTTCT Found at i:11951348 original size:7 final size:7 Alignment explanation
Indices: 11951336--11951349 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11951326 TAGTCAGCGA 11951336 AAGTGTC 1 AAGTGTC 11951343 AAGTGTC 1 AAGTGTC 11951350 CGCATAATTG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29 Consensus pattern (7 bp): AAGTGTC Left flanking sequence: Indices 11950836 -- 11951335 TACTCTGATATTCGGATATTTCAGCATTATATGTATGAGTGAATTTAATTAATTCCCTCTCTGGT GCTACGAGGAAAAAGTTTTAAAAACATTTTGGCATAACTTTTGGCATAAAGTAATGAGTAGTAAT ATTTAACAAATAACTTCTCAATCTCTCACCTACTTCAAATTCTGTCATTGGCACATTTTTATAAC AATTATTATTTATGACGCGTCAACTTAATTCACACTTTCACACCTACCTGACTATGAGAGGCAAA TGACGTGCCACCTGTATAGAATATAACCAGTTGACCTATTGATTCCATACCTTCTAGAAATTGGA CCCTAATTGAGTAATTGATTTGCCTAACTCATTATAAAAATCTCTCATGTATCCGAGATATCTAA CTGATTGTCTACTGTCTGCCCTAAGTTTCAATTCTTTCAGGATATTTGTGGAAACAATTTGAAGT GGTACGTCTCTTCCTTGACTCACTTCTTCCATTCATAGTCAGCGA Right flanking sequence: Indices 11951350 -- 11951849 CGCATAATTGAATATAGCGAAACTGTCATCGGCACACTTTTCCCTCACGCGGCGAGAAGAACAAA CCGTCGCCGCCCTGCATGAGCAAATTATTTATAATTATGAACCCTCTTCATGCGTATCCTTGACT TCTTCTCCAACTTTTACCGTAATTACTGGGATTAAGTGTACCGTATTATACAGCAAACAGGTGTC ATGTGTCAGATGGTTTTAGGTTATTTCCGGTATAGTTATTGCAATCTAAAAGATTCATATCGTAC AAATTGACACCTGGCACTGTATTACTAAATGTTTTTCATTGATGGTTGATTTTAAACATCAAAGA TTTTGAAAGTTTCTTGTGAATTTTCAAAACCAGTGTGTGTTTCCGGAAAGAAAAAAATTAAAAAA GCTTTCCAAATTAATTAATTTTTTTAGTCATTTAAACAAAAATTGTATTATATGTATCACAAAAA TATCATTATCAGTACACTTTCCACTTGTGTTGAGTGTTTTTGCAC Found at i:11955096 original size:10 final size:10 Alignment explanation
Indices: 11955078--11955099 Score: 37 Period size: 10 Copynumber: 2.2 Consensus size: 10 11955068 TTTGGTAGTG 11955078 TTCTCCTTTT 1 TTCTCCTTTT * 11955088 TTCTTCTTTT 1 TTCTCCTTTT 11955098 TT 1 TT 11955100 TTCGTATGAA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77 Consensus pattern (10 bp): TTCTCCTTTT Left flanking sequence: Indices 11954578 -- 11955077 GCATTCCTTTCCATCTTTGCTGACCACACCAATGTGTTCAATGAGCCGAAACATAAGCGTGCTGT TCCTAACCTTCAATCCGGATTCGAAAGTTCTTAAGAAATGCACCGCCCGTAATTTTGAAACAAAA TCTTGCAACATAGAGATCCGTTACGCAATCTTCTTCTTCTCACGTCTTCAATATTTACCTATTCT CTCAATCAAATGCTCTTGACCATCCTTCGGCTCTTCCCAAAATGATGGTGAAGAGCGACAGTGTT TTATTGTGAAAACGATACTTGAGTCAACAATGAGCGGTATCTTTTGATCTACATGACTCCATTTA CACTCTCCAAGTGATGAGAAAAATGTAACAGTTATCGGCGGAAGAGAAGGTGTGAAAAGTGAGTC TCCTGTGGTGTATTTCATGAGATTCATTGTTTTTGCTTGTTACATTCATGTTTTTGCCAAAGTTT TTTGTCTGCTGAAATAATGAGTTTAGAGCATCAAATTTGGTAGTG Right flanking sequence: Indices 11955100 -- 11955599 TTCGTATGAAAGCAAATACTACTTTTTGGTTTTTTTTAAAGAAAACGTTGGTTTTCGACAAAAAA AAACTTTATTTGCATTTCTGAACAATAACTTTTAATGCTATGAAGAGTTTTTGAATATTTGAGTT TTGAAAAAAAAACCAACTGTAATAGCTTCACAAAACGGCCAGTATGGAAACGATTAAGAATTTCT ACGGGCGAAAACTCTGTTTTTATCAAATTTTTTGGAAATCGTCGACCAACATTTTTTCATCTAGT TGTCTGTTTTAATTATGTGAAAACATTTGTAATTAAACATTGTAGGGGTTCAAACAGTGCTTCTG ATTTCTCTAAACTCAGTTTTCGCCACTTTTTGACTCGAAATATAAAATTTTCCGATATGCTTTTT TTATTTTCTTTTCTGCAGCAGGTGGTATTTCTGAATACAGCTCACTCGTGGTCAACTTTTTTAAA AACCATAATCCTCTTATTTTCCATTTTCCTTATTCTTCCATCCGT Found at i:11955582 original size:7 final size:7 Alignment explanation
Indices: 11955570--11955583 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11955560 TAATCCTCTT 11955570 ATTTTCC 1 ATTTTCC 11955577 ATTTTCC 1 ATTTTCC 11955584 TTATTCTTCC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.29, G:0.00, T:0.57 Consensus pattern (7 bp): ATTTTCC Left flanking sequence: Indices 11955070 -- 11955569 TGGTAGTGTTCTCCTTTTTTCTTCTTTTTTTTCGTATGAAAGCAAATACTACTTTTTGGTTTTTT TTAAAGAAAACGTTGGTTTTCGACAAAAAAAAACTTTATTTGCATTTCTGAACAATAACTTTTAA TGCTATGAAGAGTTTTTGAATATTTGAGTTTTGAAAAAAAAACCAACTGTAATAGCTTCACAAAA CGGCCAGTATGGAAACGATTAAGAATTTCTACGGGCGAAAACTCTGTTTTTATCAAATTTTTTGG AAATCGTCGACCAACATTTTTTCATCTAGTTGTCTGTTTTAATTATGTGAAAACATTTGTAATTA AACATTGTAGGGGTTCAAACAGTGCTTCTGATTTCTCTAAACTCAGTTTTCGCCACTTTTTGACT CGAAATATAAAATTTTCCGATATGCTTTTTTTATTTTCTTTTCTGCAGCAGGTGGTATTTCTGAA TACAGCTCACTCGTGGTCAACTTTTTTAAAAACCATAATCCTCTT Right flanking sequence: Indices 11955584 -- 11956083 TTATTCTTCCATCCGTACCATTCAATTCAGAAAGCCAGGTGGCTGGCAGGAGGACAGTTCTTGCC ACCTGTGCGCAGACACTGTTCCTCCACGTTTTACGAGTTTTTTCATTGTTCCTTTACTGCTCTTG GTTACGTCACCCCGACAATTGTATCAATAATTACGGACTCTTTGTGTCGTTGAATGGTGCCGCCC TTTTAGAACCTATACAATAAATTGGTTAGGATACGCATGGTATATAGAGGTCATGCCAAGGCACT CAACTTTTATATGTACCACTTGGCGTAACATGTTCTCTTGCTATTTTTCTTTATTCATTGCCAGG TGCGATAACTATGTGTCAATTGTCAAGATGCTTGAATCATTATGACGTGGCAGGCACTTCATACC TAATACCTCCCCCAAACCTAAATAACTATGCATTTTTAGAAATAAATGGGGATTATGTGAATCCA TCGGCCCAATCGGTCGGGTTTTATGCTCATAATAAAACGTAGAAT Found at i:11956973 original size:9 final size:9 Alignment explanation
Indices: 11956961--11956979 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 11956951 AAAACTGCTC 11956961 CCTCTCCAA 1 CCTCTCCAA 11956970 CCTCTCCAA 1 CCTCTCCAA 11956979 C 1 C 11956980 TAACCCAACG Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.21, C:0.58, G:0.00, T:0.21 Consensus pattern (9 bp): CCTCTCCAA Left flanking sequence: Indices 11956461 -- 11956960 TACCCCCGACCGGACGCCTAATGAACCATTTAGCACCCCCAACAGAGAAATCGGTTTGGGATTTT GGGTTGAGAGTTGTATAGGAGGATAAGGAAAGTGGTGGTGGCGGTCTTCTATGTCAAATTTCGAC ACATTTAGAGTCTTTAGAATGGAACACAATGCAATTTTGGTTCAGCTGACTTGAAGCTTATCCTC GTTTGATTGCTCCCGAGCAAGTCTGATTCATCATTTTGTCGAAGTTTAACAAAATGAATTTTTTG ACATTTGTTGGCGGAAACTGAATAATTTTCTTAGTCAGCTTTTCAATTTCAAATTCTGCTAATAA CATCTATGTTCAGTAAATTCTCTAAATTCATCAGTGATTTGAAAATTACCTGAAACTTCTTACCC CATTTTTCTTGTTTGACAAGAGTAATATTTTTTCATGCAGTTTACTCATCATCATGAAAAAAATT TAATAAAAGTCGAAATCGTTGTTTTAAGAACTTCAAAAACTGCTC Right flanking sequence: Indices 11956980 -- 11957479 TAACCCAACGCCTTCTTTTCCATTCATCAATCCAATCCATCATCGTTACATTGTTACCAAGCATC CATTCAGTTGCATAAGCAGTGAAAGTAAGAGGAAGTGATCCTCAGCGCCTGCTCATCATAAATCA CAACGATCCACCGTAAAATTGCGCGTGCTCTACTGCTTCATGGGACAACACTCATCACCCAACTA GTTTATTGTTATTTAGGGTGCAATCAGAGAATCCCCTCGTAATTCTTTCTTATGGAATAAGGGAA CGTTTTTTGGGAGCATCTGGTGATTTGCCGGTCAATGTCTAACAGACCTCATACGCTAGGGTCAT TGCGAAGAAATTGGTGAATCCATAATGTTGCTGGAATATTTGTTCTTTTCTTCATTTTCTTGGTC GTTTTTGTCATTCTAGTGATATTTGAGATGGGGTAGTGTTCTTTTCTCTTTCTCCTTCCAGTAGA AAAACTTTACCACCACAAAAAAAGCAAAATGAATTCATCGGGGCG Found at i:11959202 original size:9 final size:8 Alignment explanation
Indices: 11959190--11959206 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 11959180 AAACTTTTTC 11959190 AAAAATTT 1 AAAAATTT 11959198 AAAAATTT 1 AAAAATTT 11959206 A 1 A 11959207 GCTTTCCAAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35 Consensus pattern (8 bp): AAAAATTT Left flanking sequence: Indices 11958690 -- 11959189 TTCTATTTGAATTGGTTGACGCAGTTTTCTGTTCATATAATCCAGAATTCTGAATGGTTTTATTC AGTCTAGGTTAGCTTCAGGTGAAAACTACCAATTTCGGCCAATTTTCTCGCGTTTATTACGGGTT TTCTCACTATTTCTTTCCACAATTTTCCGTATTTTCCTACTTTTTACCGTCGCGTTTAGTATTAT GGCTTGTGACTTTTTGACCAGTACCGTATTGGAAATGATAGGGTTACGATACTCCTGTTTTCTTG ACTTTTCTTATTTTTTAAGTGTGAGGTTGAGGTTTGCAAGGTTTTTGATAAATCCATTTGTAAGT TTTTTTTTCAACTTCATAAGCTCTAACTGAAAGTTTACACAGACTTTGGGAATTCATCACAACAA TTCCTTACAGTGAATACTTATTAATTGGTTAAATAAATGAAACTGGAGTTCCTAAATTTGTATGG TTTCAGAAGACAGAATTTCCTAAAAGGCTTATTTTAAACTTTTTC Right flanking sequence: Indices 11959207 -- 11959706 GCTTTCCAAAATTTTGAAAAAAAAAATTAGGTTTAATTTAAAAACATTTTAAAAAGTTTCATTAA AATTCGGCCGCTTGGATTTATTTTTAGTTTTAAGGAAATACAAATTTTCTAACTTTGAGTCAATC GGGCTATGTCAAATTTTTCTTGTGAGATGCAAGCATAGAAACTTGAATTGATGACGTATGTTGTT CTAGATTCAGATTTTTTAGCAAATCGTAACACTTTTCAACTTTCAAGATTCAAAAATAAAACTGT CAAAATTTTTTTTAAGATTCAGTCTGTAATCCTTTAGAACTCTTCCTAATAGTCGGGAATCCAAA CAATAAAAGGACGATACATCACTGTTTGATGGTGCATTCCTAAACCAAACAAATAAAAAACATAG ACAGTCATTTTCCCATGTCCTCCTTCTTTTCTTCTTGTCCCGATACATCTTAATCCGCACCGGTA CACACACAAAAACATTTCTTTACAACTAATCCGATTCCCTTCCAT Found at i:11960225 original size:10 final size:10 Alignment explanation
Indices: 11960207--11960226 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 11960197 GGGTTTATAA * 11960207 AAATCTTCCT 1 AAATATTCCT 11960217 AAATATTCCT 1 AAATATTCCT 11960227 TCAAGCTTCA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.35, C:0.25, G:0.00, T:0.40 Consensus pattern (10 bp): AAATATTCCT Left flanking sequence: Indices 11959707 -- 11960206 GGAGATCTGTTTCTCGTAAAAAACAGCAACTCGGATGTGTGAGAAAGACAATAAAATATGAAGAA GAGGGATTTGGAGGAAGAGATCAAAAGAGATTTTGAGTAAGAGTTGTCAAGAAATCCCCTTCGTC CATTTACTCAGCACATGTACCCTTCCATCAAAATGTTGTGCATTCTCTTATTCTCCTTTTCCAGT GACATGTTCATTTACGGAAGGTGTCCTTGCTTGTCAACAGGTCCTTTAACCCATTACTCGTGCCG CTCCATACTCCCTTTCATTTTTTCTCATTTCTCCGACTTGGTTTACGCAACATCCTTCCTCTTCT AATGGGGTAACTTCCACCGGTAATGGTCGTGTTTCTTTTGACAAAAAGAGATTAAAGAGGCGATA CAGTGACTGATGTGCCATTAAATTATAGGCTTGAGTGTCTAACATTAGATGCTCTCTAGAGGATG ACAGTGATTTAGGAAGCCTGAATTATTTGTGATTTGGGTTTATAA Right flanking sequence: Indices 11960227 -- 11960726 TCAAGCTTCAAAATTTCCTTGTGTTGTTTCACCCGATAAAGTTTCCAATTTTGATCAGAATGTAA CCCGATTTTTCTGCAAAATGTTCTATTCTAAATGCTTCTAATGTTCAGCAATATCCGCCATAACG TGGCAACAATTTTAATCTAACACATTCCATTCTTTTTTCAATCCACTTGTCACAACGAATCAATC GTTCTCTTCTTGAACTAGCTGTACCTCTCCTCCGACATCCCTTCCACACTTGGTGGTCTTCGAAA CCAATTTCCCATAACATGCTTCATTTTCACGTTCGTTCTCCTCAACCAATGTTTACCGCTCTGAC CTACCCGCACAATATTCGTGTACTATCATTTTCAAACTGTTCGATGAGCCGTCACCAACCCGAAA AAGGCGTGCGGGGGGCGCCCAATGTTTGAAATGAGCCGTGTACTGTGAGTAGGTTGGAATTCAAG GTCGTTATCGTGCCGAAACCCTTCCGGAGGGTCCTTCTAATTGTT Found at i:11961637 original size:10 final size:9 Alignment explanation
Indices: 11961617--11961637 Score: 33 Period size: 10 Copynumber: 2.2 Consensus size: 9 11961607 GATGTATGTC 11961617 AGGGAAAGA 1 AGGGAAAGA 11961626 AGGGAGAAGA 1 AGGGA-AAGA 11961636 AG 1 AG 11961638 CTCTGATTTA Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 9 5 0.45 10 6 0.55 ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00 Consensus pattern (9 bp): AGGGAAAGA Left flanking sequence: Indices 11961117 -- 11961616 AAAATCAAAAGACGACTGGGAGATGCCACCTGTTAAGAAGAAAATAGCAGCCGTTTGCGCCAACT GACATTATCTCTTTTCGCATTACATTTTTCTAATAGCTTCTGCTAGAGAAACCTATTTTGCAAAT AAGAAATGGAAAATAAACGGTTTTGTAATTTTCAGTTTTTAGTCATTTCAGAAAAAAATTCTTAA TTTTAACTCCTGATACTATGTAGTACACATGATATTAGTATGCATTATCCCATTGGCCACTCTAT CCACCCAAAAAAAGCCAAGTGACACCTGTAAATTTGCATAACAATTGCCATTGACAGCCACTTGA ACCAGTTGCGCGTATTACCATCACATTGCTGTAACATTCTTCGTCTCCTTCAATTTCTACTTAAA ATAATCCTTTTGCACAATCTCAGGGATGCTCCAACAAAACTAGCAGAATGAAACACTTGTGAGAG GCTGCCTGTTTATGGTAACAGAGGTGGCACGGGAAGATGTATGTC Right flanking sequence: Indices 11961638 -- 11962137 CTCTGATTTAATTTATAACCACCATATCTTTTTGGAGAAAAAGCGTCTTCTTTTTCTGCTTTTCC CTCAACACACATCCACATAAACCATCTGCGCCAAAAACAATTGTTTTTGCCATTCATTGAAGGCA AGATTGATGTGTGTTGGTAATGGTCAGAAGAAACTGAGGATGGGTCCAGAGATAAATATGGTAGA TTAGAAGGAAATGAACGGAAGTATCTTCATTAGTTGGATAAGATGAAAATAAGTTGAAATTTCTC CGTGGGAGTCAGAATATTTTTGTTGCTTTCCCTAGTTGCAAGACTCTGAAAATAACCAAATTTTA AAAATATTAGCGAAATCGAGATGAAGTAGGTTTAAAACTATTTGCAGTTTTCAACACTTTTTTGC TGGACCATAATGTAATCTAGTATGCCAGTTTTTATCAGTAATTAATTTGAATACTTGTGAAGTAG TTATATTCTAAAATTCTTATAAATTTTAAAAATCGAATTTTAATT Found at i:11963647 original size:7 final size:7 Alignment explanation
Indices: 11963635--11963651 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 11963625 TGCATGACAT 11963635 GAAGTAA 1 GAAGTAA 11963642 GAAGTAA 1 GAAGTAA 11963649 GAA 1 GAA 11963652 ACATGAACAC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.59, C:0.00, G:0.29, T:0.12 Consensus pattern (7 bp): GAAGTAA Left flanking sequence: Indices 11963135 -- 11963634 AGAAATATAATTAAATTCAAATCTTCTTAGTTTTGAATTAGAGTAGTATTTCAAATGTTCTGGCT ATTTACGATAACCTCAACCCCATACCAACCATCCATAACACTTGAGTCGATTCGATTTTGGATAT GTCATTGGCATTGGTGGTTTAATTAAAAGCGTCCTGACACACAAGCTAGGCACAAATTGGAACGG AATGACTAGTGCTTAGAAGGCAAATTATTAAGTTTTCGAGTGTTGACCTACTGGATAAGACAGTT GGTTACATCATTGTCACCTACTGGGAAGAGTTACACAAATACTAACCCATGGGGGTTCACCCCAT CTGGCAGAATATGTGTGGGGCACACAGAAGGCCATGATTTACAATCCGCAGGATTTACAATCAGT CACACCGTTAGTACAGGTCATTAGGGAAGTAGAGGGGGGTGTAAAGTTGAATTATTAGAGAATGA AGTGGTTATTGGAAAGAAAATTCAATTTGCGCTGCTGCATGACAT Right flanking sequence: Indices 11963652 -- 11964151 ACATGAACACAAAAGACATTTTACAAACACAATGAAGAGTTTAAAAGTGCCGCGGCAATATAACT CTTTCTTTTCAATTTCTTATTCTTCTTACAGGAGACGACGCCTGAACTCGGACGCATCTAAGAAA ATGTCAAGTGATTCGATTTTGACTGCTGGGGAGCATTTATGGACGTATAACTCTATGAAGCAACC AATAAACGGTGGACCACCAGCAGTGCTAATGTACTCGAATCAGTCAAATGCTGGAAGTCGACTAT TCCATCATACGCCAACTACAATGAGATCATATGTAGTTGGTTCAGGAACTCCGATAATGGGATCA CAACATATACCAATTCGACATTCCGAATCTACAACGTTACGATTGAATCCAGGAGATGGATGTTC AGCATATCATACAGTTTCTGTTAGCAGGCAGAATGGATGTCCACCATCTGAAGTTTACGAAGAGA TTGCACCTATTGGTATGTTTTTAATATTTATTAAAAGTTCGGGAA Found at i:11964858 original size:9 final size:9 Alignment explanation
Indices: 11964846--11964863 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 11964836 TATGACTCCA 11964846 ATGAATAAT 1 ATGAATAAT 11964855 ATGAATAAT 1 ATGAATAAT 11964864 CGAATGTCAC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.56, C:0.00, G:0.11, T:0.33 Consensus pattern (9 bp): ATGAATAAT Left flanking sequence: Indices 11964346 -- 11964845 TATTTTTTTTTTTGGTTAAATATTATGCCAATTTCTTATTGTTTTTTACTGGTGGTTTTAGTCTT TAATTCTACTTCATTTTTTTAAATTTCTAAATCAATTTTATAAAAATGTGCCTATGGTTCTAACG TCAGCAATACTTAAATACGAACAAATTAAAATAGAAAACTAGTACAAAAAGATGTTTTTGATTGA CTTTCAAAATTTTGTTTTGGAAAAACTGATTTTGCAACACTTTTGATAGTAAGTAAAAAATTTTG AAATTTTTTGAAAAGCATCGCTGATACTTTGTTAATTTAGTAACAGTGATGTAAAACATCTTCCC AACTAACGATACTACAACTTTAGTGAGATATGTTTCCAATTGGACGCATATCTGCTGAAAAAAAT TTTGGTGGATCATTTTAGGCTTTGTCGGTTTTTAAAACACTATTTTTTCAGGTACAATGGGACAT GTTGGATATATGACAACGCGACCAAATATGGGCAATATGACTCCA Right flanking sequence: Indices 11964864 -- 11965363 CGAATGTCACTTCGAAAACCTCCACCAACATGCCGTCCACCTCAACCTCCACAAAGTCCTGTACC AAGTGATGGAAGTTATGAAATTACTCGAATAACTGGAACATCATCTGATTCTCCACGTGATCGAC AATGGAATGAAGATGGCAGAGAAAGTGGTTATGGTACAGCTCCAAGTTTACAATGGAAGAGCCCA TCTGGAAGTGCTCGTTTAGAAGCTGAAGCTGCTGCTCGGGCTATGACCTACGTGTAATATTATTT CACTTTTATGCCAATTTCTTACTGTTTTTGTACTGGTGGTTTTTAGTTTTTAATTCTACTTCAAA AGTTACGGGTTTATATGTTTCCGATGGACCAAAGATCCTTGTCTTTCATGTTTCTAGTCATTTAA ATTTATTTTGTATGTAAATAAATCGATTTAATTTTTATTTCAGAAGGTTTTCAAACGTTTGCATT ATATAATAAAAGTGTAGTTCAAAAAAGACACAAAAAAACAAAACA Found at i:11965174 original size:7 final size:7 Alignment explanation
Indices: 11965162--11965175 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11965152 TGTACTGGTG 11965162 GTTTTTA 1 GTTTTTA 11965169 GTTTTTA 1 GTTTTTA 11965176 ATTCTACTTC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.00, G:0.14, T:0.71 Consensus pattern (7 bp): GTTTTTA Left flanking sequence: Indices 11964662 -- 11965161 CATCTTCCCAACTAACGATACTACAACTTTAGTGAGATATGTTTCCAATTGGACGCATATCTGCT GAAAAAAATTTTGGTGGATCATTTTAGGCTTTGTCGGTTTTTAAAACACTATTTTTTCAGGTACA ATGGGACATGTTGGATATATGACAACGCGACCAAATATGGGCAATATGACTCCAATGAATAATAT GAATAATCGAATGTCACTTCGAAAACCTCCACCAACATGCCGTCCACCTCAACCTCCACAAAGTC CTGTACCAAGTGATGGAAGTTATGAAATTACTCGAATAACTGGAACATCATCTGATTCTCCACGT GATCGACAATGGAATGAAGATGGCAGAGAAAGTGGTTATGGTACAGCTCCAAGTTTACAATGGAA GAGCCCATCTGGAAGTGCTCGTTTAGAAGCTGAAGCTGCTGCTCGGGCTATGACCTACGTGTAAT ATTATTTCACTTTTATGCCAATTTCTTACTGTTTTTGTACTGGTG Right flanking sequence: Indices 11965176 -- 11965675 ATTCTACTTCAAAAGTTACGGGTTTATATGTTTCCGATGGACCAAAGATCCTTGTCTTTCATGTT TCTAGTCATTTAAATTTATTTTGTATGTAAATAAATCGATTTAATTTTTATTTCAGAAGGTTTTC AAACGTTTGCATTATATAATAAAAGTGTAGTTCAAAAAAGACACAAAAAAACAAAACAAATATTT TTTAGTGTTTTTGTGATTTTCAACTCGATTTTTACTCCTTTTAAGCAAAAATACTTCAAAATACA TAGTTTTTGTAGTTTTTTTTTAATAAGTATTACTCACAAATTATTACACTTTACCAATTGTTTTT TTTCGAATCTAATTAAATTGCGTAATCTTCTTTTGCTGTATTCACTCAGAAAAATTCTTTGAGTA AAACATTTGGATTAGAGACATCTTAAACAAACATGTGGAGACGGTTTATTCAGAAGCACACCAAC GAGCGAAATTGAAACTAACGTAGGATTGAGAGAAGACAAAAAGAA Found at i:11966324 original size:11 final size:10 Alignment explanation
Indices: 11966304--11966323 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 11966294 AATTTCGTGT 11966304 GTTCAAAAAA 1 GTTCAAAAAA 11966314 GTTCAAAAAA 1 GTTCAAAAAA 11966324 AAAAATCAAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.60, C:0.10, G:0.10, T:0.20 Consensus pattern (10 bp): GTTCAAAAAA Left flanking sequence: Indices 11965804 -- 11966303 CAGGTTGTTTTGAATTTTTAAGAAAATGTAAGAAGAAACAGTTCAATGCAGATGTGAATGCAAAT GATTTTATGATTTAAGATATTATTCAGAAGAATCCAGTTTCTTGAAGTTTTTGAACAAAGAAACG GAAATCAGCAGCCTCGTTGGATGTAAGTTCATCAGTTGATCCATTCAAAATTCCCTCCATAACTT CCAACATATGCTGTGTTTCTCCATCGTCCAATTTCATTTCAGATGCAAACAGGTCTGCTGTCGGA GTTTCTGCAAAATGATGTCATTGACACTTGGAACTTTTTCACAGCAATTTGCATCTTTTCTCTGT TTTTTAAGAGGAAATTCACTAGAGTTTGAAATATTCATGCAAGGTTTAACTAGCTGTAAAAGTTC AATTAATCATAAAACATACGAGAAAGAGCAACTGCAACTTTGTCAACTCCACCCATTCCAGACAG TTCTGCTTTCGCTTTTGGACCAAATACCTGCAATGAATTTCGTGT Right flanking sequence: Indices 11966324 -- 11966823 AAAAATCAAAAATCTAGATGTTTTGACAAAAAAAAGAAATTGAAGAGTTTTCTCGTTCTTGTTTT TTTTTTACCCTTTGTGATACGGTAAAACATTATTATATGGCGCTAAGAGGTAACATTATTTAATC CAATAAATGTTTAGTTTTGGTAAATGTTGGCTTTGCATAATTTTGAATTTTGCATTTTTAAAACT GTTTTTCCTGGATTGTAATTAGTTTCTCAGACAGAAAATTCACCTAAATCATTCATTCTAAATAA CGGATCTACCTACTTCAATTCTACTTATTTTCCTCATTCCTAACATGTCAATCTTCTAACGTTTT CACCTTAAAACCGGTCAGTCTCATCTGTTTCCTGAACACTTAAGAAAAAAACGAACTGTCCATCT CTCAACTCACCTTGACGAGAAAATCTTTTCCATGGGCGGACATGAGAGCCTTCAAAAACGCCTGA GTCTCCTCAACGGGCGGTCGTGTGGCTAAAGATACAGAAGGATTG Found at i:11966504 original size:7 final size:7 Alignment explanation
Indices: 11966492--11966511 Score: 33 Period size: 7 Copynumber: 2.9 Consensus size: 7 11966482 GGCTTTGCAT 11966492 AATTTTG 1 AATTTTG 11966499 AATTTTG 1 AATTTTG * 11966506 CATTTT 1 AATTTT 11966512 TAAAACTGTT Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.25, C:0.05, G:0.10, T:0.60 Consensus pattern (7 bp): AATTTTG Left flanking sequence: Indices 11965992 -- 11966491 ATAACTTCCAACATATGCTGTGTTTCTCCATCGTCCAATTTCATTTCAGATGCAAACAGGTCTGC TGTCGGAGTTTCTGCAAAATGATGTCATTGACACTTGGAACTTTTTCACAGCAATTTGCATCTTT TCTCTGTTTTTTAAGAGGAAATTCACTAGAGTTTGAAATATTCATGCAAGGTTTAACTAGCTGTA AAAGTTCAATTAATCATAAAACATACGAGAAAGAGCAACTGCAACTTTGTCAACTCCACCCATTC CAGACAGTTCTGCTTTCGCTTTTGGACCAAATACCTGCAATGAATTTCGTGTGTTCAAAAAAGTT CAAAAAAAAAAATCAAAAATCTAGATGTTTTGACAAAAAAAAGAAATTGAAGAGTTTTCTCGTTC TTGTTTTTTTTTTACCCTTTGTGATACGGTAAAACATTATTATATGGCGCTAAGAGGTAACATTA TTTAATCCAATAAATGTTTAGTTTTGGTAAATGTTGGCTTTGCAT Right flanking sequence: Indices 11966512 -- 11967011 TAAAACTGTTTTTCCTGGATTGTAATTAGTTTCTCAGACAGAAAATTCACCTAAATCATTCATTC TAAATAACGGATCTACCTACTTCAATTCTACTTATTTTCCTCATTCCTAACATGTCAATCTTCTA ACGTTTTCACCTTAAAACCGGTCAGTCTCATCTGTTTCCTGAACACTTAAGAAAAAAACGAACTG TCCATCTCTCAACTCACCTTGACGAGAAAATCTTTTCCATGGGCGGACATGAGAGCCTTCAAAAA CGCCTGAGTCTCCTCAACGGGCGGTCGTGTGGCTAAAGATACAGAAGGATTGGTTACGGTGTCAA GTGACAAGGGACTCACCTGCTGTGCACATGCTCTTGTTCTCGTCATACTCGTCTGAACAGTCAGG TGATCCGTCGCACAGGTACTTGATTGGCACGCATTCACCCGATGGACATGCAAACGGATGCCATG TAGGACAGGGGGCTGGAACTGGGATTTGATTGTTCAAAAGTTTTT Found at i:11968049 original size:10 final size:10 Alignment explanation
Indices: 11968034--11968054 Score: 42 Period size: 10 Copynumber: 2.1 Consensus size: 10 11968024 CTGATGAAAA 11968034 ATTATGCTAG 1 ATTATGCTAG 11968044 ATTATGCTAG 1 ATTATGCTAG 11968054 A 1 A 11968055 ACTTTTTTGC Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38 Consensus pattern (10 bp): ATTATGCTAG Left flanking sequence: Indices 11967534 -- 11968033 GAAGAGAGTATAAAGTTGATAAATGGTGAATATACACATACACCAATTCTCGGGGTGAAGGAAGA GTGACGAATTCAGAAGATGTTTGGATGTGGGGGATGCTGGGGAAGGATAACGACGTAAGATATGT AAGCAAATGGGCGATATGGAGGTATGTATTCTGTCAAAAGAAAATACTTCCTTAAATATGCACAA GGGGGTTCTTCTTTTCAAGCTTTTGATTAATTTTGTCATGTGGCAGTACGGAGAATGTGCAGAAC GCGTCATTTTTCTGGAATACTAACTATGTAGAAATAATATTGAAGATCAAGTACTGAACTTATAA GAATATATAAAATTTGAAAAACTTTAATTAATGGAATTTCTTGATAATATTGCCTTTTGTTTGAA CAACTGAAACTTACGGTTCTAGTTTCTAAGCTTTCACTGAAAATTGTTTCCATAGATTTATGAAT TCACTCAGATAACTTCAGAATTTTTTCTTCAGTTGCTGATGAAAA Right flanking sequence: Indices 11968055 -- 11968554 ACTTTTTTGCTTGTTTTCGACCACATACTAAAAAAAGTTGCTTTGGAAAATTTATGAAGGTTTTT TTTTTCTGACTGAAACTTCCAGATCTACCAGTTAGCATAGAGGACCGAAACATTTTATTTAGAGA AAGGTGTAGCTGAAAGATTATTCTGGGTCACTTTATCTGCATTGAAAGTATTAAGGATATTTAAA GTCTAATATTTTGAGTGTAGGATTTTTAGGAGAAAAAATAAAAGTTGTTTCAAATATCATCTCTT GAACTCAGAATTTTGCAAAACAATTCAATTATCTCCTAGTTGCATTTCTAATTTTAGAAAAATAT CAATCAATCCGATGTGACGTAGAATAGAAGGTGTTAGCAAATGATTTGTATAAAGTGAAAAAAAG AGAAAAAAGTTAAGATAGAAAGGAGTAGGTGGTGACTAATTTGTGATGCAAATTGGAGCATTTCT AACATTCAACGACCTATTGGATGCATCTCTAGATAACTGATGACC Found at i:11968449 original size:10 final size:10 Alignment explanation
Indices: 11968431--11968452 Score: 37 Period size: 10 Copynumber: 2.2 Consensus size: 10 11968421 TGATTTGTAT * 11968431 AAAGTGAAAA 1 AAAGAGAAAA 11968441 AAAGAGAAAA 1 AAAGAGAAAA 11968451 AA 1 AA 11968453 GTTAAGATAG Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05 Consensus pattern (10 bp): AAAGAGAAAA Left flanking sequence: Indices 11967931 -- 11968430 AACTTACGGTTCTAGTTTCTAAGCTTTCACTGAAAATTGTTTCCATAGATTTATGAATTCACTCA GATAACTTCAGAATTTTTTCTTCAGTTGCTGATGAAAAATTATGCTAGATTATGCTAGAACTTTT TTGCTTGTTTTCGACCACATACTAAAAAAAGTTGCTTTGGAAAATTTATGAAGGTTTTTTTTTTC TGACTGAAACTTCCAGATCTACCAGTTAGCATAGAGGACCGAAACATTTTATTTAGAGAAAGGTG TAGCTGAAAGATTATTCTGGGTCACTTTATCTGCATTGAAAGTATTAAGGATATTTAAAGTCTAA TATTTTGAGTGTAGGATTTTTAGGAGAAAAAATAAAAGTTGTTTCAAATATCATCTCTTGAACTC AGAATTTTGCAAAACAATTCAATTATCTCCTAGTTGCATTTCTAATTTTAGAAAAATATCAATCA ATCCGATGTGACGTAGAATAGAAGGTGTTAGCAAATGATTTGTAT Right flanking sequence: Indices 11968453 -- 11968952 GTTAAGATAGAAAGGAGTAGGTGGTGACTAATTTGTGATGCAAATTGGAGCATTTCTAACATTCA ACGACCTATTGGATGCATCTCTAGATAACTGATGACCTAAAAACACCCAACTTATAGAAAATTAC ACTAAATATTATGAATCGACTGGAAAAAAAGATTCTAAAAAAGGAGCCAAATGTGTTGACCAAAA CAAACGTGAGTTGTGAAAGTGCCCGTTGAGGTGGAAATCGGAACGGAATTCAATTATTCAATTAT CTCTAAACACCTGCCATTTTGAATCAAGAATAAAGTAAATTTTCAACTGAACCAAGAGAACTGAT ATGAAATGATGAATGATCTAGTTGTTAGAGGAAGGTGCTGACCACTGGAGTCTACGAATAAATTT GATTTCGCAGTCATATTTTTACGTTGAGATTATAGTAAAATAGTTTAACGTCATTTAGGAAAATT AAACTTTAAAGATCTATTTTTTTAGTTAATTAACATATTAACAAT Found at i:11968708 original size:8 final size:8 Alignment explanation
Indices: 11968695--11968712 Score: 36 Period size: 8 Copynumber: 2.2 Consensus size: 8 11968685 TCGGAACGGA 11968695 ATTCAATT 1 ATTCAATT 11968703 ATTCAATT 1 ATTCAATT 11968711 AT 1 AT 11968713 CTCTAAACAC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50 Consensus pattern (8 bp): ATTCAATT Left flanking sequence: Indices 11968195 -- 11968694 TGAAAGATTATTCTGGGTCACTTTATCTGCATTGAAAGTATTAAGGATATTTAAAGTCTAATATT TTGAGTGTAGGATTTTTAGGAGAAAAAATAAAAGTTGTTTCAAATATCATCTCTTGAACTCAGAA TTTTGCAAAACAATTCAATTATCTCCTAGTTGCATTTCTAATTTTAGAAAAATATCAATCAATCC GATGTGACGTAGAATAGAAGGTGTTAGCAAATGATTTGTATAAAGTGAAAAAAAGAGAAAAAAGT TAAGATAGAAAGGAGTAGGTGGTGACTAATTTGTGATGCAAATTGGAGCATTTCTAACATTCAAC GACCTATTGGATGCATCTCTAGATAACTGATGACCTAAAAACACCCAACTTATAGAAAATTACAC TAAATATTATGAATCGACTGGAAAAAAAGATTCTAAAAAAGGAGCCAAATGTGTTGACCAAAACA AACGTGAGTTGTGAAAGTGCCCGTTGAGGTGGAAATCGGAACGGA Right flanking sequence: Indices 11968713 -- 11969212 CTCTAAACACCTGCCATTTTGAATCAAGAATAAAGTAAATTTTCAACTGAACCAAGAGAACTGAT ATGAAATGATGAATGATCTAGTTGTTAGAGGAAGGTGCTGACCACTGGAGTCTACGAATAAATTT GATTTCGCAGTCATATTTTTACGTTGAGATTATAGTAAAATAGTTTAACGTCATTTAGGAAAATT AAACTTTAAAGATCTATTTTTTTAGTTAATTAACATATTAACAATGAACAAGGTAGAATTTAATG TTAAGGGAAGAATAAATTAAGTATATAAAAATTGAGTTCCAAATCATAGGAACCAATATCACCTG CCTAACAGATTCAGTTACAACAACATCTAAGCCTATTCGTCATCTCAGTTAACTTCGGAATTATT TTAATATATGCGTGTGTGCCAGGAAGGAGACAAAAAGAAATATACTCAAATGAAAAATTGAAAGA AAGCGAGTCATGAGTGGGTAATAAAAGTTGATCAATTTAATAATT Found at