TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_2L assembled 2004-4-6 md5checksum:29037f68a520aa000acffb8837e59820 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 22407834 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Warning! 100 characters in sequence are not A, C, G, or T Found at i: i:13078634 original size:13 final size:13 Alignment explanation
Indices: 13078616--13078642 Score: 54 Period size: 13 Copynumber: 2.1 Consensus size: 13 13078606 TACACCATAT 13078616 ACCACACACACAC 1 ACCACACACACAC 13078629 ACCACACACACAC 1 ACCACACACACAC 13078642 A 1 A 13078643 GGCACAAAAA Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 14 1.00 ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00 Consensus pattern (13 bp): ACCACACACACAC Left flanking sequence: Indices 13078116 -- 13078615 GTATGAATTACATATTTTATCTTATGATTTGAAAACATTTAAATAGCCCAAGCACAAATAACTTA CAACTTACTTACAGTAGTTTTTATTGGATGTCATATCAACTTAATTATATTTAATGATACCCATA AATTGCATTTGAGGTCTCAAAAAAAAACAAGAATAGCTCATGTGCTGGGGTGACTCTCACACATC ACCATTAAGTGATGACTAATTAGGGAATTTGGCTAACTTTCCGTTTCGTCTGCAACCCTCTGCAA TTGTTAACAATAATTGTGCGTGTATATAGTATAGACTTGTATGTTTATATATATTTCGCTTTGTG GCTGGGCTTTTTTGTTATGGCAACAGCTGCTGGGTGCTGCGGCGGCTGTTGCAGTCCGACAATAA ATAAACAGCGGGCCACTTGAAATTGGATCGCCAAAAAAAGAAAAATAAACAACGAGACAGACGGC AGCCATAAACCCGCACACCATCCACCAAACACCCATACACCATAT Right flanking sequence: Indices 13078643 -- 13079142 GGCACAAAAACAAACACTCGCCAAGGGAGTTTTCACTTTTCTGACACTTGACTTTACTTGGTTTG TCCAGGGTCCGAAGTCGGTTGACCCTGCCCCTGTCCCCAAAAAGCCCCCCCATATGCCCCACCAT GCTCGCGATGATGTCACACCAACTGGCCATAATAACTCATAAATGAAAAGTGAAAATCGTGAGGA GGCCCTGCCTTCTGCTCGCCGTAGAAAGTTGCGCAAATTCTTTGGCCCTGGGGGCTTCGCATCGG GATCGGGGCTACGGGCTACGGGATGGAGCTGGAGCTGGAGATGGGGCTTAACTTAAATATTTGTT GAATTGTCACGCTTTTTTACATCATCAGCATCTTGGGGCCGATTGCCATCGGACTCATCATCGTC GGCGCTGTCTTCACCTTCATTCCGGCCGCATCCTGCGTACGTTTTTGAGGACAGCTGTCGATTTG TTTTATTTTTCATATCACACGGATGGGAGAAGAGCATTCAAGGCA Found at i:13078636 original size:11 final size:11 Alignment explanation
Indices: 13078620--13078641 Score: 44 Period size: 11 Copynumber: 2.0 Consensus size: 11 13078610 CCATATACCA 13078620 CACACACACAC 1 CACACACACAC 13078631 CACACACACAC 1 CACACACACAC 13078642 AGGCACAAAA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.45, C:0.55, G:0.00, T:0.00 Consensus pattern (11 bp): CACACACACAC Left flanking sequence: Indices 13078120 -- 13078619 GAATTACATATTTTATCTTATGATTTGAAAACATTTAAATAGCCCAAGCACAAATAACTTACAAC TTACTTACAGTAGTTTTTATTGGATGTCATATCAACTTAATTATATTTAATGATACCCATAAATT GCATTTGAGGTCTCAAAAAAAAACAAGAATAGCTCATGTGCTGGGGTGACTCTCACACATCACCA TTAAGTGATGACTAATTAGGGAATTTGGCTAACTTTCCGTTTCGTCTGCAACCCTCTGCAATTGT TAACAATAATTGTGCGTGTATATAGTATAGACTTGTATGTTTATATATATTTCGCTTTGTGGCTG GGCTTTTTTGTTATGGCAACAGCTGCTGGGTGCTGCGGCGGCTGTTGCAGTCCGACAATAAATAA ACAGCGGGCCACTTGAAATTGGATCGCCAAAAAAAGAAAAATAAACAACGAGACAGACGGCAGCC ATAAACCCGCACACCATCCACCAAACACCCATACACCATATACCA Right flanking sequence: Indices 13078642 -- 13079141 AGGCACAAAAACAAACACTCGCCAAGGGAGTTTTCACTTTTCTGACACTTGACTTTACTTGGTTT GTCCAGGGTCCGAAGTCGGTTGACCCTGCCCCTGTCCCCAAAAAGCCCCCCCATATGCCCCACCA TGCTCGCGATGATGTCACACCAACTGGCCATAATAACTCATAAATGAAAAGTGAAAATCGTGAGG AGGCCCTGCCTTCTGCTCGCCGTAGAAAGTTGCGCAAATTCTTTGGCCCTGGGGGCTTCGCATCG GGATCGGGGCTACGGGCTACGGGATGGAGCTGGAGCTGGAGATGGGGCTTAACTTAAATATTTGT TGAATTGTCACGCTTTTTTACATCATCAGCATCTTGGGGCCGATTGCCATCGGACTCATCATCGT CGGCGCTGTCTTCACCTTCATTCCGGCCGCATCCTGCGTACGTTTTTGAGGACAGCTGTCGATTT GTTTTATTTTTCATATCACACGGATGGGAGAAGAGCATTCAAGGC Found at i:13121989 original size:12 final size:12 Alignment explanation
Indices: 13121972--13121995 Score: 48 Period size: 12 Copynumber: 2.0 Consensus size: 12 13121962 GAACACGAAT 13121972 GTCACAGTATGC 1 GTCACAGTATGC 13121984 GTCACAGTATGC 1 GTCACAGTATGC 13121996 AGTATATAGA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 12 1.00 ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25 Consensus pattern (12 bp): GTCACAGTATGC Left flanking sequence: Indices 13121472 -- 13121971 TGGGGCTTTTTGGTTAATTTGTTTGGTCCTTGTGAATAATTAACGTGGATTTTCAAGTGAAAGTC GAACAAAGTATTAGTGCATGGTGCGTGGTAATGTTTAAAGATTTTTAAGGCACGCTTTTGAAATG TTGATGTTGGTTTGGGAACTTGACATTCCCTCACTCTACAAGTAACGAATATAATCATAAAAGAC TATGAGTTGCTGTTTATTCAGGGATCAACTACGATCAATAATGGTAGTATGCCACCAAATAAGAA CAAGCCTTATGAAAATCAAACCCCAGAAACCACACCAGCAGCATCTGCAGCAGCAACAGCTTAGT TGCAACACAAAAAGCCACAGCAACAGTAGAATATCACGCAAAAACAGCAGCAGCAACATCTGTTA CGACAACAGCAATTTTCGTTTAACAGCGAGCAGCAAACGGTAGCAGCAAAAGTAACAGCAACAGC AACAACAATTGCAGTGACAGCAGCAACATGGCCAAGAACACGAAT Right flanking sequence: Indices 13121996 -- 13122495 AGTATATAGAGATAGGTACATATATACATGGCTATAAGCCTAATTGATGCGCTCTTTCCAGCATT GCCTGATTTTGTTGATCTTCTTGTTATATACGTAGCTAACTGGCGATGTTGCTGTTGTTGTGTCT AAAAGCTAAAGCTAAAGCAGTTATTCAATTTGATCTACTGGCAAACTGCGCTGTTGCTGCCGCTG TTTTAGCCATTTGCCTGTCCGTTGTCATTGTAACAATTTTATGGCTAGTACGTTTTTATTTCCAC AGATTTCAGTGATTTTCTCTAGTCTCGTTTTTTTTTTTGCTAACAAGCGCCGGTTTTTGTTTCGA TTGCATGACGCATTTAGCGATTTCAAGTTCAAATCACTTTTCATGGGTCTTTATGTAATCACGTA AGCGTCATTTGCGGAATACGTTTCGAATCCAGATGATGACTGTGACTTCATGCAGAATGAGACGC TCCTAATAGAGTTGCATTTAAATTAATGGCCCGAGAACTTGGATT Found at i:13158158 original size:11 final size:11 Alignment explanation
Indices: 13158142--13158163 Score: 44 Period size: 11 Copynumber: 2.0 Consensus size: 11 13158132 CCGGTTTCGA 13158142 AACCCCTTTAT 1 AACCCCTTTAT 13158153 AACCCCTTTAT 1 AACCCCTTTAT 13158164 TAAACAATAT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.27, C:0.36, G:0.00, T:0.36 Consensus pattern (11 bp): AACCCCTTTAT Left flanking sequence: Indices 13157642 -- 13158141 CTTTAGAAAAAAAAAAAATAGAAGTGAAATCCGCAAATGCCGGAAAAAAGGATAGATGGAGCAGA GTGAGAGGATGCTGTTTAAACGGATATCCTAAATGTCTGCCCGGATGGGCGATGCTCCGCACTTT TGGCCTGACACTCGTTTCCGTTTTGAAGTTTTTCATTGCTTCCCATGGCGATTTTACGGGCGAAT GGAGTGTTGAGGTCCTGATGAGCGGACCTGTTGCGCGGAGACAGATTCATGGCATCGTAAAATAT GCCATTTGAATTTGGGAATTTAGTTTTAATAACCCAAAAAGGAAGCCAACGATAGCGGAAAGTTG TGTTTATTTAGGTTTTGTTAGTGATGCGCAATATAACAGTTTCACACACTACTATATATTGTATA TTCATTTACACAATCAAAGTTATAAATCTCTTATTGGCTTATTATTTAAGTGGTCGCCTGGAAGT ATGCAATATTTGTTTTCAAATCAGAACGATAACATCCGGTTTCGA Right flanking sequence: Indices 13158164 -- 13158663 TAAACAATATTTGGACTCTGCAAAAAAAGAGACAAGCTTTTGGAATCATCACTATCTAAGGATTC CGACACAAAATCCGTTTGAGCAAATACACCAAAATCCAGACCATCCTCCCACGCACACACACACA TACACGCTTCGGCCATTAGTGTGAGTGCTCGTCCTTTCTCTCTTCCAGCGGAAGTTGTCTGTGTT AATGGAATTACATGAATTCCAACTCTGAACCGCAGAGTAAAAGCGAGAATACACTGGCAGGCGAC ATTTCCGCAAATGCATGGCCCATAAACTTTGACGGAGGTGGTGGGGGGTGAAAGCAGTCTAAACG AATAGAGAGAGAGAGAGAGATTGTTGCGGCTAAAGCGGAAATGATAATGGCTCGAACCGACGAAC GACATTTTATCGCATTTAAAACTCTGCCCCATATACATAATCCACTTTTGGCTTTCTGCTGGCAA AATCGAAACAAATGTATACAAATTATATATCATATATATTCCATA Found at i:13220067 original size:11 final size:11 Alignment explanation
Indices: 13220053--13220075 Score: 46 Period size: 11 Copynumber: 2.1 Consensus size: 11 13220043 TTTGTATTTT 13220053 ATTTTCAATGA 1 ATTTTCAATGA 13220064 ATTTTCAATGA 1 ATTTTCAATGA 13220075 A 1 A 13220076 AAGCTGACAA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 12 1.00 ACGTcount: A:0.39, C:0.09, G:0.09, T:0.43 Consensus pattern (11 bp): ATTTTCAATGA Left flanking sequence: Indices 13219553 -- 13220052 TGCACTTTTCGGGGGCGACAGCACAGCTCAGACTCTTCGCATTCAATTGTTTGGCTTAATTAAAC TTAATTGCTGCACTCTGCGCTCACTTCACCCTTTGTTGTTGCTGCTGCTGCTGTTGTTGTTGTCG CAGTCCGTTTATTTTTCTCCAATCAAAAGGCGAGCACACACACCCACACACGCAATACAAACGAC TGCAGGCAAAAGGTTAGCATATCACAAATTAAAACAACCGAAGTCCGCTACTAAGACAGCTATTT CCCCATTAAGATGAAATAGTGTTTTTAATATTTACAAACTGGCATATTTCTTTGACTTTTCAATG CACTTTAGTATGTAGCTGGAACTGGAGTCGATGTTTTTGGGCGACTATCGATGTTGATAGAAGTT GCACTATGCCTGAATATCGATAAGTTCAGTTTTTATCCAGAACTTATTGATAGTAATCGCTGCTA TCATCTTTGGTCCACCTCTTGTTGTTATTTAATTATTTGTATTTT Right flanking sequence: Indices 13220076 -- 13220575 AAGCTGACAAAATGATATCGCGCAAACTACTAAACCTTCGACTGGGTTACCTGGCACGCCGTTGG GCCAGCACGGATCCGCTGAGCATTCAGAACGAGAAGCTGCAGGCTTATTTGGAGTCTCTACGCCA GGAATACTACGCCGTGCGAGTCAACGCCGCCGGAAACAGCAAATCCTACGCCCGTCTCGCCCAGC TGGAGGGCGTGGTCAGTGCCCTGGAGCAGCGACGCGTACTAGAACGGCACATCACCAGCGCCAAG GACATGGAAGCGGAGAAGGACGAGGATATGCGTGAGCTAATGCGCGAGGAGAACGAAGTCTATGT GGATCTACTGGGCAAGCAGGATCAGGCCTTACTGCAGGAGCTGCTTACGCTCTCTGACGATGAGG AGTATCCGGCTCTGATCTTCGGCCTGAATGCCGGCGCCGGTGGCCAGGAGGCAATGCTATTCGCC CAAGAATTGTACGAAATGTACACCGGCTATTTCGAGCACATGGGC Found at i:13323653 original size:11 final size:11 Alignment explanation
Indices: 13323637--13323658 Score: 44 Period size: 11 Copynumber: 2.0 Consensus size: 11 13323627 GCCATTCGAG 13323637 GTTTTGCGAAA 1 GTTTTGCGAAA 13323648 GTTTTGCGAAA 1 GTTTTGCGAAA 13323659 CTGCAACAAA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.27, C:0.09, G:0.27, T:0.36 Consensus pattern (11 bp): GTTTTGCGAAA Left flanking sequence: Indices 13323137 -- 13323636 AAAATGTCATAAAGGTATATTAGTTTATATCTAAAACATACTTTTTGGGCGCTCTATAAGTTATT TGATTTAAAGCCATTATTTTAATTGCTTTCTCTCCGCTCATTTAGCCTCCAGGTCAGTCCGAGCA TCTTGACAGCAAATTTGCAAATGGATTTTAGTGGGCTATTTTTGGCAAATGTAGCATACCTCGGG GAAAGTTGCAGCGAAGGACAAGCGACTGCAATCCCCTCCTCGCCCCCCTTCTCCCACTGCCACTG CCATATATGTAAATCGTGCCATTTTTGCGCTTTACGTATGTCAATTTAAAATGCAATTCGAATTG CGACAGCTATGTGGCTGAAAACTGGCAGTGGGACTTGTGGCGTGGGTGGATATGAACCAGTTTAT CCTTGGTGGCTGCACTGTGTGTGTGTGTGTGTGTGTGTGTTTTGATGAACGGACGTGGCTGGGGC CGTGCCAGCGTAATGAAACAGTGCGTCAAATATTAGCCATTCGAG Right flanking sequence: Indices 13323659 -- 13324158 CTGCAACAAAATGTGGCAAAGGCCGCACCACAGTAGGCGGGCAAAATTTGCACAGGCGCCCACAT GAGCCGAACCAGATACAGAAACGTATGTGCATGCAACTGTCACAGTTGCCCAGGGGACAAGTTCT AGGAGCTGCCAAGCTACCTTTTTTCCAGCTTCCACAAAAATCATCCAACAAAAAATTCGACAGGT GCTGCAAGTGCTGTTTGTGAAATATTCAACCATGTGAGTGCCGAATTTCGGTCGAGAAAGTGCGT GGCAAAAATTCCAGAAAGTATTCTCCACACCAACCTGACCAATTGAAAATAAAACGTGCAAATAC CAAAAATGAGCAGTTATTTGCGCACGTTTTCAGTTGCCACTGCAAAGAACGTATAAACAAATTTT TCTTCGAAACACATTTGATGATAACATTTTTGAACAAACTCTGCAAATGTTCATCAGCCACATGT ATTTATAAAAAGTTAAAAACTCAAAACTAAAGTTTGCAACATTTA Found at i:13743515 original size:11 final size:11 Alignment explanation
Indices: 13743499--13743522 Score: 48 Period size: 11 Copynumber: 2.2 Consensus size: 11 13743489 CTTAACAACA 13743499 TAATATATAAG 1 TAATATATAAG 13743510 TAATATATAAG 1 TAATATATAAG 13743521 TA 1 TA 13743523 TAAAGGGTTT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 13 1.00 ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38 Consensus pattern (11 bp): TAATATATAAG Left flanking sequence: Indices 13742999 -- 13743498 TGAGGGGATCCTTGGAACTGGAACTGCCACCCATAAGACTCGCACTGATGGCGTATGTCATTAAT GTCGCCAATGATGTTGCTGACAAACACACTCATGCCACACCCACACAGCGGCAAACATTGGCTAC AAATGGTACGCAATTGTCATCCGAGCGTAGGGTCCTTCGCATGGCCATGGCTTTTTGCCGAATGC TCCTGTATCCGGGTTCCTGGGTCCACTCTGCGGGTCCTGGTAATTAGATGAGTGTGCCATAAATC ATTTTCTAAATCATTTGTTGCTGCTGCCTCGCAATTGCAACTGCTGCTGATGGCCCTGATAGTCG TCTGTCCGACTGCTCACTTTTTCCATCCAATTCCTTTCGGTTGGACAGCCTGAAAGAGACAGGAA CAATCACAAACAGCCAGTTGAGCAATTGGACTAAGGCTAAAAAAAATCAGCGAATGAACAAGGGG ATCTTAAACAAACTGGATAACCTCTAAATATTCTGCTTAACAACA Right flanking sequence: Indices 13743523 -- 13744022 TAAAGGGTTTATTAGGTACATATTTTTTATATTGAAAAAGGGATCTTTCTTAAAATATGGGCCAA GTAAATATGTTTCTTTAGAGCTGATATAATTAAATTATATCTTAGTTATCTTAAGTATGGAGCTA TTTCTATTAAAGGTCAACTTCAAATCAATGAAACTAAATTGCCACCAAAGATATTAATCGCAGCA GTTGATCAGGTCATTGTCCCTTCCTTAAACGCTTTCAATTGTTGGCCATTAACGGTGGGCTTCTT GGCCAAGCCACAGCGGCCTACGACAAACATGTTACTCATTATGCAAGTCACAGTCACAGGAACCG GGGGAATACATGGTACACTATGTGGCTGAAGGACTTTATCGGGGTTGGGTGTATTGGTGGAAACA CAAGATGACCAGGGGGCACAGTGTCTACAATCTAAAACGCATATTACTCGTACAATGAGCCACGC CCACCGGCAACTAACAAGGCAAACAAGCCGGCCAACGGGGAAGGA Found at i:13746693 original size:12 final size:12 Alignment explanation
Indices: 13746676--13746701 Score: 52 Period size: 12 Copynumber: 2.2 Consensus size: 12 13746666 TATGGCATAC 13746676 TCGGTCCCGTAG 1 TCGGTCCCGTAG 13746688 TCGGTCCCGTAG 1 TCGGTCCCGTAG 13746700 TC 1 TC 13746702 TTGGGTAGCT Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 14 1.00 ACGTcount: A:0.08, C:0.35, G:0.31, T:0.27 Consensus pattern (12 bp): TCGGTCCCGTAG Left flanking sequence: Indices 13746176 -- 13746675 AAGCCTCAACCACCTACAGATAACGCCCAGCAGAAGGAATACAGACACGTTTGTATTTCGATGCC CATTGAACTGTGGGAAAAATGTCAACATTATGAGTTGATGATAGGCCGGCGATGGGCAGCTGATA GTCGTGGAATTTAGGGCGAAATATTTGAGTTACGTACCCGAAAAGAAATACGTTTTTTCCATCAT AGCGGGGGGTCAGTGGGTGGTCGAGGGTCATCTTCGCAAACATCTCTCTTATCATCAATCTTTGC GCCTCAACACTTTGAGGATGCTGTGGCAGCTGAGGACTGTTGAGCCCTGATGAAGTTATAATATT TATTTGGTTTATTATCCCAACTGCTTGTGGTCCCCGGGGAGAGGGAGTGGAACTGCTTAGACAGT CGTTGATGGCTCATTTTGTTATCAACATATGAGAGGAGTTAGTTCATTGCAAGGAATGGAAGCTT ATATCTTAGTTTTTATAATGGTATAAAGCGGTTAATATGGCATAC Right flanking sequence: Indices 13746702 -- 13747201 TTGGGTAGCTTTTCATGACCAAAAAACCTATATACACCGAACTGTGTATCTTTATTATTCCAACA TCAATATTCCAGCTGCATCGATAAGTCATGCCCCCCAAACAACGATGGACATTTTGCACCGAATA ACCTTGTATATTCCTTTCAGGAAGAACTTTTCCCGAGGAGCAGAACATTTTTATCAACTTTCCCA GCGGTATCGAAGGCAGCGGGCTCAACAAATGCCCTGTCAGAATTTATAAAAATGTATTTCGGCAA AAGTGAAAAATCATTCACATAACCCACCCAGTCACACACCCAGTCGCACACACACTTCTCATTGT CGCAGCTTCGGCACACGTGCTGCGGAATGGCTAAAGAATGGCAAAAATGGCAGTGATGTGGCCTT AACACCACTTTGGTGGGGGTAAGTTGGTGGTGGTGGGTAGTGGGGGGGTTTCTGCTTGCTTGACA CTGCCCCAATGCCCCATTGTTGTTCCTACTGTGCTGCTGATTTTG Found at i:13907338 original size:11 final size:11 Alignment explanation
Indices: 13907322--13907344 Score: 46 Period size: 11 Copynumber: 2.1 Consensus size: 11 13907312 TAATAAAAAA 13907322 TAAAATATTTT 1 TAAAATATTTT 13907333 TAAAATATTTT 1 TAAAATATTTT 13907344 T 1 T 13907345 CCTACTATAT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 12 1.00 ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57 Consensus pattern (11 bp): TAAAATATTTT Left flanking sequence: Indices 13906822 -- 13907321 ATACCACCAAGTTCCAATGGCGCTCGTACCAATCGGAGGATCTCAAGCGCCAGTTCAAGGCTCTA ACCAAACTGGGCTATGCTGCTCTACCTGAAGACGACTATGCCGAACTGCTGGACACACTCTCCGC CATGGAGTCGAATTTCGCCAAGGTCAAGGTGTGCGACTACAAGGATAGCACCAAGTGCGACCTAG CCCTCGACCCGGAGATCGAGGAGGTCATCAGCAAGAGCCGTGACCACGAGGAGCTCGCCTACTAC TGGCGCGAGTTCTACGACAAGGCCGGAACCGCCGTGCGATCTCAATTCGAACGCTACGTGGAGCT CAACACCAAGGCAGCCAAACTGAATAGTAAGTAGAAACATTATTGCAATTTTAAATGATTTATTG AGGCGATTGAATAAGTCTTTCAATCACAAAAGATGTTTCAGAAATCTGTTTATTCAGTAGAAAAT CTTAAGCAAGGATAAATAGGGATAAAAAGATACTATAATAAAAAA Right flanking sequence: Indices 13907345 -- 13907844 CCTACTATATAACAAGAGACGTGAGTTTTTACCTACGTAAAGTGCAATTTGTCACAAAATCCATT AGCTTAGCAAAAAATAGCTTTTGTAGATTAGATTCAAGTTAATGAAATTTTAGGCAGCAGAACGT TATAATTTCAGTGCTATTTGTCATTTTAGTAATTAATATAATTATGATAAATACAAATTAAATTG TTAAAAGTGAAGTGTAAAGTACTTGTTTATAATATAAAAACGTAATTTTTTGCTTCCAGACTTTA CTTCTGGTGCCGAGGCCTGGTTGGATGAGTACGAGGACGACACCTTCGAGCAGCAGCTGGAGGAC ATCTTCGCGGATATTCGTCCGCTTTACCAGCAGATCCATGGCTATGTGCGTTTCCGCCTGAGGAA ACACTATGGTGACGCGGTGGTCTCCGAGACAGGACCCATTCCCATGCACCTATTGGGCAACATGT GGGCACAGCAGTGGTCAGAGATTGCGGACATCGTATCCCCCTTTC Found at i:13941220 original size:11 final size:11 Alignment explanation
Indices: 13941204--13941225 Score: 44 Period size: 11 Copynumber: 2.0 Consensus size: 11 13941194 AGTCTTTTGT 13941204 TTCGCTGGACG 1 TTCGCTGGACG 13941215 TTCGCTGGACG 1 TTCGCTGGACG 13941226 CCGGTGAAAG Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.09, C:0.27, G:0.36, T:0.27 Consensus pattern (11 bp): TTCGCTGGACG Left flanking sequence: Indices 13940704 -- 13941203 TGGACAGAAAACGAAGCCAGTTTGCTGCAAATGCCACAGTGACACACTAACTGGGTGACTCCAAA AGCCGCCACAACAGCAACAGCACCTAAATGCAAAAACAAAAATTATGCAACTTCTCCAAAGTATC TCTTTTTCGAGCAGCTGTAGCAGCGGCAGCAAGTCGCAGCATGGTAGTTGGCTGGACTCCTGCAG TTGCCTAGTGCCCCAGCCAGATTTGGGAATCTGCCGCTGGTGCAGCTTGATTTCTTTTGGATATT TGGGAAAGATGTTTTCCAAGAGATTTTCCTATTCAATTTGGGACTACTTGCTTGGTGCTTGGTCC ACTCCAAAGGCGTTGGCTGGCATTTGTTGTTCGCCCGCTTGACATAGTTCGCGGCTGAGATAAAG AACTTGAAGGAGTGTCCATAGTCCCAGTGAAACACTTTCAATACGGAAACGTGCCACTAAAGCTG GGAATAAATCGCAGTGAATTCGAGTTCGTTGCCTGAGTCTTTTGT Right flanking sequence: Indices 13941226 -- 13941725 CCGGTGAAAGGATTCGCGCGGCGCAACTTTCGTGCGAGAGAAACACACCCGTGGTCGAGACTAGG CCAGGCCAGACCACAATTTACGGCAATAATTCAAAAGATGGATTGCATAATACTATTGAATGCGA TGCGGTAGCATTTATGCGCTTAATTGTTTGCAATTTGAATGCACCATCAGATGGGGCGGAGATGA GTACGGACAGGTGGTTAATCAGAAGTCAAGGAGGTCGAGTCATAAGTCGATGTCAAGATATGATC TGGAGTGCGCTATAGATGGAGTGAGCAACATCGTTGGCAGCCAAAAAAAAGGCACTTTAGTTATA AATATATTTTTGGGGTAGTTTTAGATGTTTTCCACTAAATTACTTTTCTTAAAATTTTAGTTTTA AGCTTTAAATTGAAATGGCATATACATAAATCTTTAATTAAACCCCAAAACGTAAATTTAGATCT TCTTTTATTGCCTGGTTTTTATAGTTTTCCATCGTCATCGCCGTG Found at i:14081037 original size:12 final size:12 Alignment explanation
Indices: 14081020--14081043 Score: 48 Period size: 12 Copynumber: 2.0 Consensus size: 12 14081010 TCTCACTTTG 14081020 TAACCGACTGAC 1 TAACCGACTGAC 14081032 TAACCGACTGAC 1 TAACCGACTGAC 14081044 ATGGCACATT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 12 1.00 ACGTcount: A:0.33, C:0.33, G:0.17, T:0.17 Consensus pattern (12 bp): TAACCGACTGAC Left flanking sequence: Indices 14080520 -- 14081019 ATACAATTGAACCATCGCAGGTGTGCCCGGCAAACGTAACGAAATCTATTACAACTGCTGCCCGG AACCCTATATAGACATCACCTTCGCCATCATCATCCGCCGACGAACACTGTACTATTTCTTCAAC CTGATCATACCTTGTGTACTGATTGCCTCCATGGCCTTGCTCGGATTCACTCTGCCGCCAGATTC GGGTGAAAAATTATCACTGGGTAAGTTGGGCTAGCATAGCATTCCAGAGGCACACCAAACTGGAG GGGGAAGGCAAGTGCCACATTAATTTCAAACCACTTACGCAACGCAAATACTGGGGTATAACAAG CTGCCAACACACATGCAAACAGCTTGAGAGCCGCTCGAAAAGTATTTGCCAAGTACTTTTTAAAT AATGACAGCCTAGTTGGCGGCGAAAGCAGCGAATTTCAAATTAGAAGCTCCTCATAATCGTGTCG ATAGGAATGAGCTACAGCTCCCCAGCCAGCTGCCTTCTCACTTTG Right flanking sequence: Indices 14081044 -- 14081543 ATGGCACATTATCCATTATGGCCATCGTTACCCACTCCGCCAGTTTGGGCCCGCTGATGACGCCA CAGTCTCAGCGATGGTGAGCAAACTATTGAACTTTTAATGCTGCCATCGGAGCTGGGAGCTGTGT AAAGTGTTCAACGAGTCGAGGAATGCTCCTTAAAGTGTGCTGCTGTCTGTCGACAGGACATGGCA TTAGTGGCTCGGAAAATCAGTTGGGACTCGTCCTAGCCGACGACTCGGCTCCTTGAGTACACAAA ACTGAATGGCTAGTGAGGTCGAGTTGAAAAGTGCATGATACTAAAAGCTTTTGGGTAGGTTGCAC CTACTCAAGCAGTGTTAATGATGGGTCATGTCTTTCCAAATGATTTGGAAAACAATTAGTCAGAG AAGCAGACTTTAAGAACTGTTAGAAAATGGTGAGAAATGGTTTGGCTAGGAACACAAAACTAAAT AAAACGAAGTTAACACATTTTAATTAAAACTGAAACCAAAATGGA Found at i:14161113 original size:17 final size:17 Alignment explanation
Indices: 14161091--14161132 Score: 84 Period size: 17 Copynumber: 2.5 Consensus size: 17 14161081 TGGGGAGATG 14161091 CATTCCATGCTCAAAAT 1 CATTCCATGCTCAAAAT 14161108 CATTCCATGCTCAAAAT 1 CATTCCATGCTCAAAAT 14161125 CATTCCAT 1 CATTCCAT 14161133 TATCCTGATT Statistics Matches: 25, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 17 25 1.00 ACGTcount: A:0.33, C:0.31, G:0.05, T:0.31 Consensus pattern (17 bp): CATTCCATGCTCAAAAT Left flanking sequence: Indices 14160591 -- 14161090 CGCTTGAATATTTATTGGGGCTTACATCTGGCAGGAATTAATAAAATATTCTTTTTTTTTTTAGT TAGATGGCAAACCAAATAGAGTTGGTAAAAAAAGAAGGTAAGGAAGAGTATTGATGTTTCGACAT TAATGACTTCCTGTCATAATCACAGTAACTCAATAGGTCTCACAGGTCTCAATAGGTGTTGTTGT CAAAAGCATCATACAGTATGATTTCTGAAATCATAATGCTGCTTAAGAACACAAACGAGACATCA TTAACCCACAAACAAATAAATTAATACTGAAAACTCACAGCTATTGCTAGTTTCTCGTTAATTTA AAAATGCCTTTGTGATGAAAGGTCTTCCTGATTTTAAATGTAATATACATTTTTCTTACATATCC ATGTAGATACATATGTCTACACAACTCTACATAATTTTAGTACTCTTGCTCACACAGAGATGGCG CCAACACTTAACTAATTTTTGTTATAACCTATAGATGGGGAGATG Right flanking sequence: Indices 14161133 -- 14161632 TATCCTGATTTGTAATCCTGATTATATAATACAAACTCAGTTAGATTTGTTGCAGAACCAATGTT TTAATTGTAATTAAATGTGATCACATACATATGTACATTATCCAAAAAAGTTTCCGAAGGGTAGT GGTGGTCTAGGCGGTGGTCGAGGAAATGCTGGGATCGGTGGTGGAGGCGGAATAGGTAGTATAGC AATTACAGCAGAATCAGCCTCTGGCAAGGATCCAATGAATGGAAATGGTGGAGGTGGAAGGGGGA AGCGTGGCGGTGGAAGCGGGAAGGCTGGAGGTCCAATCACTTCGTGGTGGTGATGGTAGTGATGT TGGGCCTGTGGGTTGGAGGGAGCTGTTGTTGTGGTTGTTAATTCTTCAGTGGATGTCGATAATGT TGTGGTTGTTATTTCTTCAGTGGTTGTAGACGCGGTGTTTGAGTTGTCCTCAGTAGTTGTTGGAG CTAAAGATGTGGTTGTGGGAGATATTGTTGTTGTCAATTCTTCAG Found at i:14275177 original size:12 final size:12 Alignment explanation
Indices: 14275162--14275185 Score: 48 Period size: 12 Copynumber: 2.0 Consensus size: 12 14275152 CCAGCCGTTC 14275162 TTATGCACACAA 1 TTATGCACACAA 14275174 TTATGCACACAA 1 TTATGCACACAA 14275186 ACCGACAGCT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 12 1.00 ACGTcount: A:0.42, C:0.25, G:0.08, T:0.25 Consensus pattern (12 bp): TTATGCACACAA Left flanking sequence: Indices 14274662 -- 14275161 GATAAACATTTAATATTCGATTAATAATTTATTTATGTATGTATGAAAGTCCGCATGTCTTTTAG TCATCGATACATAACCGATAAGTTATTATAACTTTCCAACCCTATAAGAAAATGCAAGTATGTAT ATCGATACTGCAAAGTTCCAGCCCTATTTGTCCTTACTTGCAATTCATTTTCGAAAGAATCAAGT TGGTTGCTTTTATTGAAAGTCTGCAGTCTGAAATTAATTGAAGTGAAGAATATAAAGGCCTTGCT TACTCTTGACCAATCTCAGGTAAGTATAAACCATTATAGACGGACTAAGAAAAGGCAAAGAATCT GTAGGTGAATTCTTGAATCCACGTGCTTCTAGAATCTAAAAGCATTTTTCTGTTTGGCGTTTCAT TCATATCGACATGGCGCACGCGGTACAGAAATATTTTCACTATTTTCGGACAGGCGGCTGGGGAT TTGGCTATCTTTGCCCCATGGGGTCCCGGTTTCTTCCAGCCGTTC Right flanking sequence: Indices 14275186 -- 14275685 ACCGACAGCTGGAGGCAAAAATTACAGAGGCACAGAATGGGGCAACTCCATCTCCTCGTTCTCCA GCTGCTTATTAAGCCGTTGCAATTGCAATCCAACTTCAAAGATGGCAATGGAAATTAACCAATTG CTGGGATAGACAAGCTGGCTGTTAAGGTAATCTTCAGTTAGTTGGCAACTGGAGTGCTTCCTGTC CGATGGACTTTATTCGCCTGTCCAATTAATTCTGCAAGTGTTTTGCATAACCAAACTGCCATCAA CTTGCATACAAATAATGATTTTCGGTAGATGAAAAATATTTTATAAAGAGTAAACCGAAAAAGAC AGCGAAAAGAAGCAAATTTTAAAAAATTTGACAACATGATGGCGAAAAAGACTAAAAATGGTCTT ATAACTCGATGAATGGTCGGGGAAGTAATCAGAATTTTGGCCATAGAAAGGCTACTGCCAGAGAA TATATAACAAAGAAAGCAGGATATGCTCTTAAAATTAAGGAATAC Found at i:14340145 original size:13 final size:13 Alignment explanation
Indices: 14340127--14340154 Score: 56 Period size: 13 Copynumber: 2.2 Consensus size: 13 14340117 TTTCGTTTTT 14340127 ATTCAAATTGAAA 1 ATTCAAATTGAAA 14340140 ATTCAAATTGAAA 1 ATTCAAATTGAAA 14340153 AT 1 AT 14340155 GCTTTACCAT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 15 1.00 ACGTcount: A:0.54, C:0.07, G:0.07, T:0.32 Consensus pattern (13 bp): ATTCAAATTGAAA Left flanking sequence: Indices 14339627 -- 14340126 CGAACTGCCCCTCATCCTGGGCACTTCCACGATCGAGGACCCGTCGAAGCTGACCAAGCAGAGGG ATCAGGAGCGCAGGCGTTTTCTCTGCTATCGCTTCACAACACCCAGGTCATCTAAGCGTCCCCAG AATCATTTTCTATTGCAACGCGCCGAATTTGTTTCCCAGGTGCTTTACTCCGCCTTGTGCGATGA AGATTTCCAGGATATTTCCTTTCCGATCTTGAGAAACATTCCAAAACTGAGGACCATTCCGGACA ACGTCATCTCCGGTGCCGGCGATGCTGAAAAGAATCCATCTAATCCGTAATCCATCAGAAACTGT TTTGTGTACAATTTATAGCAGTTCTTATACCCTTTGTATTCGTTAAATTTCCTGTTCATATCGAT GGAACTTTTGGTAACTTGGCTAAAAGGCCAGAAAATTAATAACGTGTTTGCATTCCTTTTTAAGA TGGATACAGTTTTTTTTTTGTTTATTTTTATTTAGTTTCGTTTTT Right flanking sequence: Indices 14340155 -- 14340654 GCTTTACCATTTCACTTGTCAATTGGACAGCCAGCAGTCGTTATTTTTCAGCTTTTGAATTAGCC AATTCATTTTTTGAGGAGCCGTTTTCTTGACCCCATTAAAAATGTGCCAGTGTAGATAAAAAGAA AGATGATTGCAATCTCAAAGCCTTATAATCTGCAAGATGAAATTGCAACTTTTTAATTGAAAATA ATTGGATAATGGAAATTGAACCGCATCTGTGCGAAGCTTTTCTTGTTGAGTGACGTCAAATGAAA ATCCCTTTGAGTGTCAAATAGCTCGACTTTTATTCTGTGGCAATCATGAGGGATTTTGGCCAATT TGCGCAGTGCCTTTCATTTATTTGTATTTATTTTAAAGAAATATGATTACAAGCCTGGTAACTTG AGCAGAATTAATAACCTATCTATACACATTTGATAAAAAATGAAAATGTTATAAGTTCATTAATG ACGCATTTCGACCCTTCTTCTGTAATTAAGATTTTAAATGATTTT Found at i:14342647 original size:11 final size:11 Alignment explanation
Indices: 14342631--14342654 Score: 48 Period size: 11 Copynumber: 2.2 Consensus size: 11 14342621 TTTTGTAACG 14342631 ATATGGTATAT 1 ATATGGTATAT 14342642 ATATGGTATAT 1 ATATGGTATAT 14342653 AT 1 AT 14342655 GGTATGGTAT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 13 1.00 ACGTcount: A:0.38, C:0.00, G:0.17, T:0.46 Consensus pattern (11 bp): ATATGGTATAT Left flanking sequence: Indices 14342131 -- 14342630 TGAATTTACAACATTCTTCTATCGATTCACCCATTCGTGCACTTTGATTTGTTGTAAAACATTCT CCAAACCCCAGAAAGAACTTTAACAGACTCTACTGCTTACAACCAAAGGAATCCCACTACTGACC TGGTCTTTTTCCGTAACACCCACTTTGTAGTGTGTAAATATGTCTTCAGCAAAATCCTCTAACCA AAATGTGTGAGCTTTCTATAAACCCAGATCACTTCAACCGCTAAATCCTTAAAAATAGGTGTTGG TTCCTTTGTAACTAACCAAAATATAAAAAAACCAATCTGTGAGATACAAAACCAGTTTCGAATGG AGATAACAACATCAAAATTAAATATTTTTCTCTAATTCTTGATGCACACATAAAACGAATTATAA AACACGCCACTCCTATCGACAACAATCACCACATGGATATGTTGAACAAACAAACCAACGATTCT GGGTTATTTTGGGTTATCTGGCGCGACAACAATGATTTTGTAACG Right flanking sequence: Indices 14342655 -- 14343154 GGTATGGTATGATGGACGTTTTACCTTGGTTTTCTTTCTTATGCACTTTGGTTTCGATTTGGTTT TGCTTTATTGCTTTGCCACTACCGCGCAATCACACACACCCACACCATGTCCATCCAGCACCAGG GACAAGACCAGCGATCCGGATGGCGATCCGGATGGGGAAAGAACTAAATGTCAACTGCCCAATTG CAGCAGTCGCGCCAAGCAGCCGCTGAGTGCCTGGCACTCGAACATCGAGGACACGCGCTGCAGCT ACACGGGTCTCTATCCTCGCTCCTGGACGGAGTACGATCTGTCCCACTATGGAGTCCGTCTGACC TGTCGCCAGGTATCGCCGGTAATACCGCATGAGTACCGCGAGTCCAGCCTACCGTGCGCCGTCTT CGTGTGGAGCGTGGAGAATGTTTGCGACCAGGAGCGCAAGGTGTCCATCACGTTCACTTTCAAGA ACGGCACAGGGAACAAGAAACAGGATGCGGAGGGCGGAGCCGAGT Found at i:14342810 original size:12 final size:12 Alignment explanation
Indices: 14342795--14342819 Score: 50 Period size: 12 Copynumber: 2.1 Consensus size: 12 14342785 GACAAGACCA 14342795 GCGATCCGGATG 1 GCGATCCGGATG 14342807 GCGATCCGGATG 1 GCGATCCGGATG 14342819 G 1 G 14342820 GGAAAGAACT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 13 1.00 ACGTcount: A:0.16, C:0.24, G:0.44, T:0.16 Consensus pattern (12 bp): GCGATCCGGATG Left flanking sequence: Indices 14342295 -- 14342794 TAAATATGTCTTCAGCAAAATCCTCTAACCAAAATGTGTGAGCTTTCTATAAACCCAGATCACTT CAACCGCTAAATCCTTAAAAATAGGTGTTGGTTCCTTTGTAACTAACCAAAATATAAAAAAACCA ATCTGTGAGATACAAAACCAGTTTCGAATGGAGATAACAACATCAAAATTAAATATTTTTCTCTA ATTCTTGATGCACACATAAAACGAATTATAAAACACGCCACTCCTATCGACAACAATCACCACAT GGATATGTTGAACAAACAAACCAACGATTCTGGGTTATTTTGGGTTATCTGGCGCGACAACAATG ATTTTGTAACGATATGGTATATATATGGTATATATGGTATGGTATGATGGACGTTTTACCTTGGT TTTCTTTCTTATGCACTTTGGTTTCGATTTGGTTTTGCTTTATTGCTTTGCCACTACCGCGCAAT CACACACACCCACACCATGTCCATCCAGCACCAGGGACAAGACCA Right flanking sequence: Indices 14342820 -- 14343319 GGAAAGAACTAAATGTCAACTGCCCAATTGCAGCAGTCGCGCCAAGCAGCCGCTGAGTGCCTGGC ACTCGAACATCGAGGACACGCGCTGCAGCTACACGGGTCTCTATCCTCGCTCCTGGACGGAGTAC GATCTGTCCCACTATGGAGTCCGTCTGACCTGTCGCCAGGTATCGCCGGTAATACCGCATGAGTA CCGCGAGTCCAGCCTACCGTGCGCCGTCTTCGTGTGGAGCGTGGAGAATGTTTGCGACCAGGAGC GCAAGGTGTCCATCACGTTCACTTTCAAGAACGGCACAGGGAACAAGAAACAGGATGCGGAGGGC GGAGCCGAGTCGCAGCTAATCAGCGAGGGCAACGCCAAGGGAGTCTCCATCAGGCAGAAGATCTC TGAGATGCCCTGCAGTTATAATCTGGCATGTAGGGTCCTTCCCGAGATCAGCATCACGCGGTGCC CCCAGTTCGATCCGGCCGGCAACGGTGAGCAGTTGTGGGCACAGC Found at i:14389762 original size:14 final size:12 Alignment explanation
Indices: 14389731--14389760 Score: 60 Period size: 12 Copynumber: 2.5 Consensus size: 12 14389721 AACGCCAATA 14389731 TGTGTGCGAGTG 1 TGTGTGCGAGTG 14389743 TGTGTGCGAGTG 1 TGTGTGCGAGTG 14389755 TGTGTG 1 TGTGTG 14389761 TGTGTGCGGG Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 18 1.00 ACGTcount: A:0.07, C:0.07, G:0.50, T:0.37 Consensus pattern (12 bp): TGTGTGCGAGTG Left flanking sequence: Indices 14389231 -- 14389730 CAAAATCCCCAACCAATAAATTTCATCCACCCACCCGTTTCCCATTCCCCATTCTCCATTTTCCT TTCTTTCTGCGCGCGGTTGGGTGACAAGTCCAGCCTGGTCGAATGGGTTTTGGTGGGAGGAACGG GTTGGGATGGCTTGGAATGGGATAGTGCCTCCAATGATAAATGGTCGCGGCTAGAGGGAACTATA ATGGCCAGCGCGATGGCGGTGGCTTTCACCTGCGATGTGGTATGAGCAAAATAAAACAAGAATCG GAAAAGCGTCGTATTGCGGAGGGTGGAGGGCGGAGGGCGGAGGGCCGGCGAGATCTTCATCCTCG GCTTGTCAAAAGCACTGAACGTGAACATCACTTATATATGAGCTGTATGCCCCAAAGCCCCTACC AAAACCCATTTCCAGGTGCCCACTCCACAACCTTTTTTGTCCAGAACGATTCTCGGCTATATGTG GCGAAATGGACATTTATGAAAGAATTATTGATGCCAACGCCAATA Right flanking sequence: Indices 14389761 -- 14390260 TGTGTGCGGGTGGTTGGAAGGTTTGTGGCATATTTTTTATGACTCCCGCCAAGGGACAGAGATGG TGACCAGAGTCGGAGCCTGAACCGTGCCCTGGCCTGGCCAGGTCATAGGGTGTTCCCTTCACCAA GGCCCGCTCCTTCGTCGTATAATACAATAAATTGTCAGGTGGGGGGGCTAGCTGTCAAAATGCAG GGGCATAACTCTCTCTCTTCTCCACCAACCCCCAACCTTGCCACCAATCCCACCTTACAACCCCA CCATCTATGGCAAAAACGAAAATTTTAATTTATCGACGCCATATGTGGGCAGTGAGCAGAGGAAC TATTGCCAGTCAACTGTGTGTGCCTGCCTGCCCCTTAAGTTCCACCTACCATTTCTCAACTTCTT TTTGGGGAAATATAAAACTTGATTTACTGCCATTTCGTGTGTATGTGTGTGTGTGTATGTGTGGG GGAGCGGTAGCTGTTCCAGTAGCTCGACTGGTATAATTTAGCGGC Found at i:14563668 original size:11 final size:11 Alignment explanation
Indices: 14563652--14563675 Score: 48 Period size: 11 Copynumber: 2.2 Consensus size: 11 14563642 ATTTGATGTG 14563652 TTTAAGTAGAT 1 TTTAAGTAGAT 14563663 TTTAAGTAGAT 1 TTTAAGTAGAT 14563674 TT 1 TT 14563676 AATTTGAATA Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 13 1.00 ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50 Consensus pattern (11 bp): TTTAAGTAGAT Left flanking sequence: Indices 14563152 -- 14563651 CATTCCCTAGCAAGTTGAATGGCCCTACGCTCGTTGACCTTCCACAATTCCGCAACGTCGTTGGC CAGTGGATCATCTGGGTTTGGAGCACTCAACAGGGCCTGGATCGAAAGAAGAACGGTACGAATTT GCAAAGCAGGACTCCATTTATCCTTCAGGATGTCCAGACAAATTCGACCCACACGGTCGATGTTT GGATGGAAAATCTTTGTCAAAAATCGAACCTTTGGTGCTTTCATAGGATAGTCTTCGGGTAAAAA TAATTCCAATTTAAAATTTCCACCCTCAAAAGGGGAATCTTTGGGGCCAGTAACGAGGACGTGGA AATAACGCGCATTACACTCATCAGGCGTGGCACTAATCCCGGGAACTGGGTCCTCCAGAAGGCGC TGTGTCTCCTTGATGATTCGTGGAGTCAGTGCGGCCATCCTCTGTCTACCACTTCTTGTGAATTG CCTTTGATCCGTTTCCTCCAAAAAAACGCTGTTAAATTTGATGTG Right flanking sequence: Indices 14563676 -- 14564175 AATTTGAATAAAATTTCTGAATTACACTGTCGGTTACTTGGTTTTTCTAGCAAGACTGCTTGCTA CAACTGATGCATAACCTGTCAATAAATTAACTTAGTTGATTTGAATGCCCAAGTCATCTCAATAA GACCGAATCAAATGCTCAATTCCCATACATTTGCAATTATCCTTCAGTGGGCATTGAAATTGAAA TTGACTAGAGGCACTTGCCCCTCCATACCGCTCCCACCACCCACAACAATAAAAGCGAACCGCAT TTCCATCCTGCAACGCTTGAGGGTCCTTCTGAAATCCCGGGTGAACTGGCAATGTTAACTGGCAC TCAACTAGCAGCTTATTAGCAAACTTTCCCATTGGATTATATAGTTGAATATTATAATAATCGAG TTAGGTTCGTGTAAGTGGATGCTCCGCCGCCCCTGCAATCCGCATACTTTTGGGGGCATGGTTAG CAGTCAGCTTTCATGCACAATTTCCGTTTTCATGGCTCCGGGCAT Found at i:14614947 original size:12 final size:12 Alignment explanation
Indices: 14614932--14614955 Score: 48 Period size: 12 Copynumber: 2.0 Consensus size: 12 14614922 CAGCCACCCC 14614932 TCCCATCACCAT 1 TCCCATCACCAT 14614944 TCCCATCACCAT 1 TCCCATCACCAT 14614956 CCAGTCCCGT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 12 1.00 ACGTcount: A:0.25, C:0.50, G:0.00, T:0.25 Consensus pattern (12 bp): TCCCATCACCAT Left flanking sequence: Indices 14614432 -- 14614931 TTCCTTCTCATCATTTGTATGCAAAAAATACATATGAATTTGCAGTAGCCTCCTCCCACATCATA TTTAACGCCCTATATTCAAAATTTGCTCAAGAAAATATTTGAACCAAATTGATTTTTAGTCAATT AGTTTTTAAGTAATTAAGTGGAGTAAACATATACAATTTTATTCTTACCAAACACATATACTCAT ATATTTTGAATAAATAAATAAACAAATATATATAAAATCTACGAAATTGGCAAACAAATTTTAAA GCATTATAGTATTGCCGATTTAATTAATATAATTAAATAATATGTACATGTATTAATCTTGTGTG CGAGCATGGGTTAAATCTAGCTGCATTCGAAACCGCTACTCTGGCTCGGCCACAAAGTGGGCTTG GTCGCTGTTGCGGACAAGTGAGATTGCTAATGAGCTGCTTTTAGGGGGCGTGTTGTGCTTGCTTT CCAACTTTTCTAGATTGATTCTACGCTGCCTCCAGCAGCCACCCC Right flanking sequence: Indices 14614956 -- 14615455 CCAGTCCCGTTGGCTCCCAGTCACAGTATTACACGTATGCAAATTAAGCCGAAGTTCAATTGCGA CCGCAGCAACAACACGATCTTTCTACACTTCTCCTTGCTATGCTTGACATTCACAAGGTCAAAGC TCTTAATATTCTGGCTCGTGGCCCTACACTGTAAGAAATTACTATAGAAATAACGGTACACGGAA TAAGATATTTTTTTTAGTCCATATGCTTTTAACAAATGTGTTTTAAGTTTATGTTATATTATTGT TAGAAAACCGGTGTTTTTTTAAAATCGGTTAAAAAATTACTACGAGAGAAAAATACAAATTTTGT AAATAAGATTGACTCTTTTTCGATTTTGGAATATTTTCATTCATTTTATGTTTTTACGTTTTCAC TTATTTGTTTCTCAGTGCACTTTCTGGTGTTCCATTTTCTATTGGGCACTTTACCCCGCATTTGT TTGCAGATCACTTGCTTGCGCATTTTTATTGCATTTTACATATTA Found at i:14702001 original size:11 final size:11 Alignment explanation
Indices: 14701985--14702006 Score: 44 Period size: 11 Copynumber: 2.0 Consensus size: 11 14701975 GCTGGGCGAG 14701985 CAAGTGAAATT 1 CAAGTGAAATT 14701996 CAAGTGAAATT 1 CAAGTGAAATT 14702007 AATCAAATTT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.45, C:0.09, G:0.18, T:0.27 Consensus pattern (11 bp): CAAGTGAAATT Left flanking sequence: Indices 14701485 -- 14701984 TGAACCAAGCCAGATGGAGTAAAAAACGAACAAAATATTTTACAACACTTTCGCTCGTTAGAAGC GGGCGGGTGCAGCCTCAGCCAATTCGACTACAGTGCTCCACGAAAGTGTACGGCTAACTCTTGGC TGCACTGAGAAAAATATTTCAAATTGAGCAGAAAAAGAGTTGGTGCTTTGCAATGGCTAGCAATC TTTACAAAATATAAATAGAATAAAATATAGTGTATATATCGATAGGTATTTGTGAAGTTGTGTTT ATCGGACACTAGTTTTTCTCAGTGTGGCTATCTGTCTCCCCTCTATGCACTCATTGCCGCTTTAA TTGCCCGGTGAAAATGTGCAGCAACTGCAGTTGGGGCTACAAAACACTGCAACACTAAGGCGCTT ACCTGCCGCTCTACTCTAATTACCCGAAAACTCTTGGGAGTCGATGCCTCTTGATCATCTGTGAT CCCTTTCTGTAAGATTTTTTGAAAGATGCCGCCGTGCTGGGCGAG Right flanking sequence: Indices 14702007 -- 14702506 AATCAAATTTGTTTTGAATTTAGGTTGAGACGTGGATGCGATTTGTTCGGGCGAGAGGATTGTTT GTGCTGCTTGGCTAGGGTGTAATTAGATTGCAGTTAAACAAGTGAAATTTTAGGTATAATTAGTG TTTTACTATTTATTACCTAACTTTAAAATGTTCTTTATTTGTATATTTTTTATTGTGTTAATAGC TAATAAATTCCTATTCAGACAGCATCGCACATAAAACACTGATAGCCAAATAAATTTTTAGCAAT AACAATTCATCAAATAACGCCCATTCAATGCCGCAATTCGCCTTTCTTCTGCCGTTGGAAACTCA ATTTCAATTTGCTGCCAACTCCCCCTCCGCGGCCAATTGACAGCTTCTTGGGCCAGCACCTTGGC GAAACTTGGGTCAATTGGTTGCCATAAATCTTCATAGAACATTGTTGACTGCCGGCGACAGTGCG AAATAAAAATACGAATTTCATTACAATTTGTGTCCATACCCCGGC Found at i:14747506 original size:14 final size:14 Alignment explanation
Indices: 14747487--14747518 Score: 64 Period size: 14 Copynumber: 2.3 Consensus size: 14 14747477 GGATTTCGCT 14747487 TAAAGAATCTCACA 1 TAAAGAATCTCACA 14747501 TAAAGAATCTCACA 1 TAAAGAATCTCACA 14747515 TAAA 1 TAAA 14747519 TCGTTAGCTT Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 14 18 1.00 ACGTcount: A:0.53, C:0.19, G:0.06, T:0.22 Consensus pattern (14 bp): TAAAGAATCTCACA Left flanking sequence: Indices 14746987 -- 14747486 CGAAAAACATTTGTAGATTGTCAAAAAACAATAGCAAAACATGTGTGTTTTAGTTTATAGAAGAA CATGACATTATTATTTATTTGGGTAGAGTGCCCACCTGTAAAAAAGAAGTTGGTCCTTTTAAGCA ATCAAATGAAATTCCAAACAATTTCAAATCTTATTTAATTAAGCAGAGTTCGCTTGTTGTTTCTT TTGTTAGTTCCCCAATTTTTTTTATTACAATGTTCCACGCGGCGTATGAACAATGCGGCTGGTTT ATTGCTTACGCTCCCACAGAGAGAGCATAAAACACACACGGACTCACACATACCCAACATCATTA TCAACACTAATGCACAGCCACACTGAAACACACTCACACACACTCGCTGAATTGTATGGGGAGAA AGTAGGTTCTGAGGAAACTGGTCTTAACTACTTTCTGCACGTCTGCAGATAAAATCGATAAATTC CTTTTCGTAAAACGAATTAGGAAACTAATTGACTTGGATTTCGCT Right flanking sequence: Indices 14747519 -- 14748018 TCGTTAGCTTAAGCGTGATTCTGGCAGTTGCATGGTTGGGGTTTTGGTCTTTCGGTGCGGCAATT CTTTAACTTTTTCAGTAGTCCAATGCCAAGCTGAAATTGGAGCAGAAATTGTTCGCATTTTATTT TACTTAATTTTTCCTGAACTATTTATTTTGCACCATAATTACACTGGTTTACAGAGCTGAATGTG GAGAGTGGGTCTAGCTAGGTTTAAATTTTTCTTAAGATCATGTAAAATAATTATAAAATATAGGC CCTTGGAATAAAAGACTTTTATTAAAACTTATTGAGCAATTATAAGCCACATAAATGAGTTTTCA AGAAAAGTTTAGAAATGCATTTTTTGTAAGCTAGTGTGTTCAGCATTTTAATTATGTGGCCGACG TTGTCGGACGTTAAATGTCATTAAATGTGAAACATTTTCTCCCATCGCCCCCTTCCATTCGACTC CTTCCGCTTACCACTCAGCGCCATCATCGTAGTCGTCGTCATCAT Found at i:14772881 original size:11 final size:11 Alignment explanation
Indices: 14772865--14772886 Score: 44 Period size: 11 Copynumber: 2.0 Consensus size: 11 14772855 TATATGCATT 14772865 ATATCCATTGG 1 ATATCCATTGG 14772876 ATATCCATTGG 1 ATATCCATTGG 14772887 TATTATTCCT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36 Consensus pattern (11 bp): ATATCCATTGG Left flanking sequence: Indices 14772365 -- 14772864 GGCCACTTAGACATCGAACACAGAGGGAATTTTTCATAATGCCCTGGCAATAACACCAAATAAGC TGATAAGACCGAACTGATAATTTTATGGAAATACGTTATAATCTCTAAAGGATCGTTCCCATTAT GGCCTTCACATCAGGTCCTTATTAGGAAGTGTGGTGAAGATACAACTAATTGCAATCAATGAGTT AAGTTTACGTACTTTATATATAAGTTAATGATATGAATTCCTTAATAAAAATCGCAACCAAATAA TACTGTGCACTTACACAAATATATAACACTTTAAGGTATATTGACTAAATTATTTTAAGTTTCAC AATCCATAGATAACAATTCCATTTATTCTTTAAAATTACACAAAGTTAATAATTTTAACTTTTTG ATCATACCCTTTATTCATATCATATAGCTTTTTAAGCGTACCGATTTCCCTCCTAATTTTTGAAT TTAATAATTTTTTTTTCTTTGTCTTTCCTGTTTATTATATGCATT Right flanking sequence: Indices 14772887 -- 14773386 TATTATTCCTAGACTTTTTAATTAAATTTTTATCATTATCGAAGTTGATGGAACGTACCGAGAAT TGTATTCGTTTGGCAGGTGTTCAATAAGTTAATTTCCTGTCTGATTACTGATTATGCGTCACTGT TGCATTTAACAAGGTGGTGGTTATTGGGATAAATCTTTCTTAATTTAAATTAATCTAATTTCGTT AACTGTTTGTGCTTTTTATATAATTTAATTAAATTTAAAAGTGCTTAAGGCAAACGTCGGTTAGC ATAGACAAATACATTTCAATTTGATTTGTCTGGAAAGAAAAATCTTTTTCGAAGCAATCTAAAAT ACAAAAGTTTGCAGACAACAAAAGGCAAAACATAAGAAAATCAAGAGCAGAAGGGGGCCCAAAAG GAGTTGGAAAAAGACCAAAAGGAGTGATGAACCAAATAGCCATTGAATATAATAAATCACACCTT TGTCACTCAATGCGAAAACGTATTTTTCCAATTAAAAGCCAAAGA Found at i:14876662 original size:12 final size:12 Alignment explanation
Indices: 14876647--14876678 Score: 64 Period size: 12 Copynumber: 2.7 Consensus size: 12 14876637 GCAGCGTCAA 14876647 CAGCAGCACAAG 1 CAGCAGCACAAG 14876659 CAGCAGCACAAG 1 CAGCAGCACAAG 14876671 CAGCAGCA 1 CAGCAGCA 14876679 ACTGCAGATG Statistics Matches: 20, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 20 1.00 ACGTcount: A:0.41, C:0.34, G:0.25, T:0.00 Consensus pattern (12 bp): CAGCAGCACAAG Left flanking sequence: Indices 14876147 -- 14876646 TTAATTTGAAATCGTTATGGATGTGTACAAATTACAATTTGTGACCAGCTGTGCCATCGCACCAC ACTGCCTGCATTGTCTATCAAACCCCACTGAACACCCAGTTGGAATACAAAATTCGCTTTAGCTA GAGAGCTTCATTGAAGGCCCAATATGCTCCTTTTGGCTCTTCGAACTTAAAATTATCTTGTGGAT CAATATAAAAAAAAACAGCACGAGTTGAATGGATATTATTGGGGCTTCGCCGGGAGGAAGTTATC TTCAAAGCTATTTTTCTTCAATGAAAGGAAGCCTTGATTGATTAAGTGCTAAACTAGATTTAAAA GCCAACGAGGGCAGGTAAAACTAAGTAGGAACCGACAGGAGCTGAGGGCGTCGAGTGATTATCAT TAGCCGCCAGAGTAGTTGCCATTTAGCACGCACAACGAGATGAGTGCCAGCAACATCAGCAGCAG ATGCAACAATGTTTGAGTAATTGTTTGCCGTTGCTGCAGCGTCAA Right flanking sequence: Indices 14876679 -- 14877178 ACTGCAGATGCAACAAAATTTGCATGCAAGCACAAGTCCCTACTCACCACCCCTTAGCCCAAAAC CCCACTCATTGCCCCATTTGGCTGCACACGTAACTGAACGGTGGCAACAACTGCAGCAGTAATTG CAACAAACAATTAGCGTCACTTGGATTTATGTTTACGAGCGGCTGCCTGGACATTTTCGGCCACA ATGACAGTGTGCCCCCTGTCTACTGCCCTTTTATGGTTGTCAACGAGCAAAAAGTTGATCAATCA GGACGTGTAATTTATTTACAATTTCACTCTGACAACGAAAGAAAGAACTAAGAGTTTCTCTTCAC ATTAACTCGATCTTTCTTTCGGCCGAACCGCGTGAACCGCTATGATTTATTTAATTGCCCGCGCT TGCTGCCAGTGTTGTTGCAGCATGTAAATGACGTCATTACAAGGCGTGGGGCGTGGCAAGGTGGT TGCCTGTCGACAGACTACCCCCGGCATTAGTTTAAAGCCAGATAG Found at i:14930165 original size:11 final size:11 Alignment explanation
Indices: 14930149--14930170 Score: 44 Period size: 11 Copynumber: 2.0 Consensus size: 11 14930139 ACTAACTGAG 14930149 AAATAAATAAA 1 AAATAAATAAA 14930160 AAATAAATAAA 1 AAATAAATAAA 14930171 CATAGTCTTT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18 Consensus pattern (11 bp): AAATAAATAAA Left flanking sequence: Indices 14929649 -- 14930148 AGCGGCATATGGGCAGAGGAATCGGGACCTGTGCCGCATTACGGCAACTTTATGCTATACATGAA AACTACTGAAAAACATTTCCGGTCTTTAAAACATTGGTTGGCCCAGGAGCTGGCCAAAACGGCAA AGCAATCAGCGTATATGCATATAAGCGGATAGACATGGACATAAACAACAGCCCAGACCGTAGAG GCCCGGGTTAGGATATAGCTAACCAGGACTCGACTCGGCTCGACTCAACTCGAGGTCCCGACACA CAAAAATGAATTGCAACAAAATTGCGCCAAAACTCCCATAAATTTGTCCAAAGTTGAAGAGAAAA AAAAAAGCAAAGGAAGAAAACAACAAACAGAAAAACTCGTTTTCACTACGAATGTTTTGGGATAC CCTAACAAACGTGTTTAATTTTTCAAGAAAAATCGCTAAATTTATGTATCCTTTTTAAAAATGGT TTATATATGCAATAGATGGTTCATAGTTTACAATAACTAACTGAG Right flanking sequence: Indices 14930171 -- 14930670 CATAGTCTTTCAATTTATCTAACTTATAAAATATATAATGCATTTAAGACATGTTTAGAAGACTT AAGCAAAATAACTTTAAAAACTATGGTGAAACCTGAAACTGAGTTTAGTTTGCTGGACAGAAAGC AGTCGTTGAAAGGGTACAAACAAAAAAAAAGAAAAGTGGGTGGGCCAAAGCAAAATGCAAAGCGA ACTAGAATCGTTTGTGTATTGTGGAGTTTATATCACATTATCTGTGTTTATTCTAACCAAGTTGT GGGGTTGGCTGGGGGGCACTGGACTAGGACCCAGCTGCGAATGTGAACCACGCCCAGGGACAACA AGTGGGTGGTGGTCTGTAGTTCTGGTTCTGGTTCTGTCTGTCTCTGCACTATGGTATCCAACCGA CTTTGGACAGGGTACGTGGGTGGGTCAGGAGTTACGAGCTCCGTTTGTTTGGCATGACTGTGCAA ACACAATAAGTTATCGAGCTGAACGTGAGTCAGTCAACAGCAGCA Found at i:15130709 original size:12 final size:12 Alignment explanation
Indices: 15130692--15130715 Score: 48 Period size: 12 Copynumber: 2.0 Consensus size: 12 15130682 TGTTGAGAAA 15130692 TGCTATGGAAGT 1 TGCTATGGAAGT 15130704 TGCTATGGAAGT 1 TGCTATGGAAGT 15130716 GGACAGGGGA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 12 1.00 ACGTcount: A:0.25, C:0.08, G:0.33, T:0.33 Consensus pattern (12 bp): TGCTATGGAAGT Left flanking sequence: Indices 15130192 -- 15130691 CAGTTATACTGAACACTGGAATAAAAACATAATGAAGAGTTTAGAAAGAAAGCTACATTTTAATA TCCTACCAAAAAATATTGCTTTTAAATATGAAATAATTCTATTTAATTTAAAAATAATTGTATTA TGTATTTTCATTTATGAAATACTTACTTGTGACCTTGGCATTATTATACTGTTAATTACTTTCTT AGAAGATGCATGTTGTTTTCTTTAATCAATTCCTAATGAGATTCCCAATAACTAAGAACAACAAT AACATAAATCCAGGTTTCTGCGAATGTTTCAACTGATAAGCCATGCTGTGTCGATTATAAATTAC AGAGAGATTCTTATTCAATCCGCAGTCTTGAAATGAATACTTGTTCCTGCGGGCTCACATTTTCC AATCTTTAAGTTATATTAAATGGAACTTAAAATTGGCTACAGATACTCTGATAATACATTTCATC AGAGTAGCTCGTTTGTGAGAATACGATAGTGAGGATGTTGAGAAA Right flanking sequence: Indices 15130716 -- 15131215 GGACAGGGGATTCAAGCATCGCCTCTTCGATCCAGACACTCTGGACTACGATAAAGCGATTCTTC GTCTGAACCAAAGAGTAGAGTACCGGGGTGAGTTATATCTTTCATTCCGAGATAAAAAACATTAT ATAAATGTTACCAAATGAAATGATCATTCACAGAAAACATTAGACTGATCTGCATTGTCACGTGT ACTAGGTTGATGAATTACATTAACTCCTTGGATCCGCTGACTGGAACTGGCTGGGGAAGAACGGT AAAAACTCGAGAGTGGCTATCCTAGGACGGTGGACTTGAGAGGCCAAGATCCGTTAATATGTTAT CTATTTGTCTCTAGACATATTTTGAACACCCATTTTTTTGCTGGAAATTTGGATAGCAGTTTTAA TTCAATAGTTTTGCCATTTTTTTGCATTTTCGAGATATAGCCAGCTGAACCGTGAGAATCGGCTA CCAGGACCGACCCAGCCAGATCACCAGCCATTATGCTGTTGACTT Found at