TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_3L assembled 2004-3-14 md5checksum:58b150ba3706a94f84f5242c20c22999 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 23771897 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Warning! 300 characters in sequence are not A, C, G, or T Found at i: i:7094744 original size:12 final size:13 Alignment explanation
Indices: 7094717--7094749 Score: 50 Period size: 12 Copynumber: 2.5 Consensus size: 13 7094707 TCACATTAAG 7094717 TATCTTATAGTATC 1 TATC-TATAGTATC 7094731 TATCTATA-TATC 1 TATCTATAGTATC 7094743 TATCTAT 1 TATCTAT 7094750 CATTTACATT Statistics Matches: 19, Mismatches: 0, Indels: 2 0.90 0.00 0.10 Matches are distributed among these distances: 12 11 0.58 13 4 0.21 14 4 0.21 ACGTcount: A:0.30, C:0.15, G:0.03, T:0.52 Consensus pattern (13 bp): TATCTATAGTATC Left flanking sequence: Indices 7094217 -- 7094716 GTCGCCGCCACCTGGGATCCGGAGAGATCAGCAATGGTTTCATCCGCCTGGAACAAGACGGAGCC TCTCCGGACATCACACCCAACGGAAGTCTGAGGCGTCGGCGTAGTCGAGTTCTTGCCGAGGAGGA TGACCTGATGGAGTTCCTTCGGAGTTCGACGGGTCCTCACCACGATGGACACAATAGCAGGGAGC GGAAGGCGGCCTACGGCAGCTTGGATCGCTCGTGGGCTCGTCGTGCCCGCTCCGGAAGTTCCAGT CGCAAACGACCCGATTTGCTCAACATTGACTTTGGCATGGATCGTGAACGGGCCAGCTCCCCGGC TCCTCTTCTTCAGCAGCAGCAGCAAAATGTCCAGGAGCGACTGCAATCTCCATTGGCCAGTACAG CTGGAACGCCCACAACGGCAGCGAATACGCCCACGGGCAGTGGATCGGCGATTGCTCAGACGCCA TCTAATAACGAGGATGCGAAACCAAGGTAAGAGATTCACATTAAG Right flanking sequence: Indices 7094750 -- 7095249 CATTTACATTTTACAGAATATCCCGTGAGTGGCGCCAGAAGATCGAGACGTGGCTTCAATCCAAC GAGAGCGATGAGAAGCAAAACGAGGAGTACAGGCGGAAGCGTCGTCTGGTCAACGCCAATAGGCG ATCGCTCGAAAACGAAACTGGTAAGATGCCCCTCACAAACTCAGGACCAAATGGATCTCTTAGAT ATATTCTATGTTCGCAGAAAACGAACGAAAACTGGACCCCTTGCCGGAGGAGAAGATCCTGCCTT CGACGACGACAGCTACGCCAACGAATACGCCTACGACCACGAATCCCACTAACTCCACTAATAGA ATGGATCAGGAGTCCGGCAAATATCAGCGCGTCTATGCCGACTGGAAGCCCTCGAGGACGCTGGA GCAGACGGACGTGGTGGCCAATCTGCAGGCCATTGCCGATGCCCAGCCGCACGATGCATTGCGTC AACATCGCCGACAGCGATCGCAGGAACAGCCGAGTCCCATAGCAC Found at i:7101916 original size:12 final size:12 Alignment explanation
Indices: 7101895--7101919 Score: 43 Period size: 12 Copynumber: 2.1 Consensus size: 12 7101885 TTGTCAGATA 7101895 GAGAACAGTCTG 1 GAGAACAGTCTG * 7101907 GAGAATAGTCTG 1 GAGAACAGTCTG 7101919 G 1 G 7101920 CCTTAGGCGT Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 12 12 1.00 ACGTcount: A:0.32, C:0.12, G:0.36, T:0.20 Consensus pattern (12 bp): GAGAACAGTCTG Left flanking sequence: Indices 7101395 -- 7101894 TGGCGTCTTCGCCACACAGCAGCCCGAGCAACCATCGATGCCATCAACTCGTCGGAGAGCACGAT ATCTGGAGACCTGACCCACGCACCCGTAAAGCTATCCGCCGAGGTCTGCGGCAGTGGACCCGCCT TTCGGCTCTACCTCACCGTTCAAAACCTGTCCACCTTTAAGATGGCCTCCAATCTGGTGGTTTTG CTTCACGCGGACCGGCGTCACTATACCATTCCGCAGACACTGGCCCGACTGCCGAGTGTCCTGCC AGGAGTTCCTCTACGGGTGGACTTCGAGGTGGTGGCGGTATTGGATCCCATGGACAAATTGCCAC CGGCCAGCCTCACGCCGGATAACTCGCTGATCCGGGTTATGCTGATGAAGGCCGGCCAGGCCAAG CCACTGATCGCAGCCGCCATTTCGATGCCCCAATCCGAGGCAGCCTTCTAAGCGAAATATGTAAG CATTATGGATATTCATAATAAGATTTCGAGTTTATTTGTCAGATA Right flanking sequence: Indices 7101920 -- 7102419 CCTTAGGCGTACTTGGGGGCATACTTCTCGTACACCTTCACGTAGGCCTCCTTGGCGGCATCCTT GGAGAGACCCTTGTGGGCGTTCCAGGCCTCGTACATGGCCTTCTTCTTGAGATCCAGAATGCCGG GCTTGTCGATGTTCACATCACCAACGGTAGCCTGCTTGAAGAGACCGTAGAACTCCAGGAACTCG GAGTCGGTGGGCTTCTTGGAGAAGTTCTTGGCGAGTTCGGCGGCTTCCTCAAAACTGACCATTTT GTCATAAGTTTGTAAAAGATACTAAGTTAGTCCACTCTACCAATCGTGCTCTTATATAGGCCATT TCAATTGATATTGAGAAATTTAATTAGTTTGAATACGAACAGGTGAATTGGCCAACTTGGTATCC ATAATGCCGCTAAAATGGTTTAATTAATATTTTTTGGGGAACCTTGCGAGTAGATACTACTATCT ACCTACCACAAAAGTCCGAAGAACTATTCTTAGTAACAGATCGTG Found at i:7104189 original size:21 final size:22 Alignment explanation
Indices: 7104164--7104231 Score: 92 Period size: 23 Copynumber: 3.1 Consensus size: 22 7104154 GTCACCTGCG * * 7104164 GAAAATTAAATGGTT-AATGAA 1 GAAAATTTAATCGTTAAATGAA * 7104185 GAAAAATTAATCGTTAAATGAA 1 GAAAATTTAATCGTTAAATGAA * 7104207 AAAAATGTTAATCGTTAAATGAA 1 GAAAAT-TTAATCGTTAAATGAA 7104230 GA 1 GA 7104232 TCAAATTTTG Statistics Matches: 39, Mismatches: 6, Indels: 2 0.83 0.13 0.04 Matches are distributed among these distances: 21 12 0.31 22 10 0.26 23 17 0.44 ACGTcount: A:0.53, C:0.03, G:0.16, T:0.28 Consensus pattern (22 bp): GAAAATTTAATCGTTAAATGAA Left flanking sequence: Indices 7103664 -- 7104163 ATATTGGTAATTTTCCACCTCAGCTATCATATTAATTAATATATTTTATATTTTATTACTAATAT ATTTTCGGGAAAAAGTTACTCATTCGAAAGACTACGTGTAAGATTGTGAATGATTGATATGGCTG GATTTCTAATCAACAATAGGGTGGCGGATGTTTCCTGTTAAATATTAAAAAAAAAAACAGAAAAG TTTGTTAGTCAGCAACACTAACAGAAGTATATATATTTAATAATCATAGTTATGACGATAATGTG GTATGCATTAATATTTTACACATTAAAGAATAAGTTTTTTTTTTTATTTATTTATTTATTTAGAA GCGATGAATCAATACAATGCAATAACAGTAACATAACAGCGCAATTAACATATAAAAGATAAAAC CAAACCTCTCACTAATCATGTGAGGACTTAGTTAAAGAATAAGTAGAAAAATGTTCTTCAAAATT ATAGCATACTTTTAGGAGGTGAGTTAATTATAGTGGTCACCTGCG Right flanking sequence: Indices 7104232 -- 7104731 TCAAATTTTGGTCAACTTTTTCAACTATTGTTTGCAACTTGGTCCCATATGTATTTATAAGCAAT GTTTAAAACATTCAGAAATATTTGATATATAATTACTATCTGGAACAAAGTGCTTAAAGTGATTA GAGAGATTCTAATTACTTTACTTTACTTTACTTACTATAAAATAAAAAGGGGCACAATTCAGCAG TAATCAGCTGATGCTAACCAAGGACACACAACCTCTTGCACAGAAATAGATTATTAGCTCGAATT TGAGATAATGAACTTCAGAGTTCGTCATTATTTATGGCTAATCGTTAAAGTTTTAAAGTCCAGAG ACGAATTGGCAGGTGAATCCGGCCGTAGTGCCAAGGGCGGTCTCCCAGAACCTACCATAAACGAC AAGTGTATCCGGGGGCTATCTCCAATATCGCTACCTTTGACAATGTCGCCCGCTTGTAGTTGGGC AGCGAAATTAGCGAAATAAAGATATCGATATCTGCTGATTACCAG Found at i:7105248 original size:12 final size:12 Alignment explanation
Indices: 7105225--7105249 Score: 36 Period size: 12 Copynumber: 2.1 Consensus size: 12 7105215 CTCTGGCTCT 7105225 CAAGGACAAGGC 1 CAAGGACAAGGC * * 7105237 CAAGTACGAGGC 1 CAAGGACAAGGC 7105249 C 1 C 7105250 TGGAGCTCCA Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 12 11 1.00 ACGTcount: A:0.36, C:0.28, G:0.32, T:0.04 Consensus pattern (12 bp): CAAGGACAAGGC Left flanking sequence: Indices 7104725 -- 7105224 TTACCAGCAAAATGGGAATATTTGCCGTGCGTCCATAAACCAACAGAGAAACGAAAGGGTCTCGA AACTATATAAGCGCGAATGAAAGGCCCAAAAGCCTTCAATCGTCTTTGCCTTTTCACCGGTAAGC ACATTAGTCAAGGATCCTTGTTCAACTCAGTATTTAATTGGGATTATTACCTTCAAATTTTCAGC ATTACCAACAAGAATCCTATACTAGCAACATGGTGTCGGTGAGTATTCTACACTTTGGATATAAC GTCAATTTAGTGAAAGATTGCATAAGAGGAAATTCCCATTTTTCACACTTTTATGGTGTTATATA AGTACAAAGTTTCCTGACTGCGACTTTCCTTTGCTGAACAGTTCGAGGAAGCCACTGAACTCGCC AACAAGTTCACCAAGAAGCCCACGGATGCCGAGTTCTTGGAATTCTACGGTCTCTTCAAGCAGGC CACCGTTGGCGATGTGAACATCGAGAAGCCCGGCGCTCTGGCTCT Right flanking sequence: Indices 7105250 -- 7105749 TGGAGCTCCAACAAGGGTCTCTCCAAGGAGGCTGCCAAGGAGGCCTACGTAAAGGTGTACGAGAA GTACGCCCCCAAGTACGCCTAAGCCGGCAACCGATCAAATCCGATCCAATCCGATTCCGATTGCG GACCCCCCATGCACCTGCCATCACCACTATAGTACTTAGTTGGACAATAAAGATTACCAGATATA TGAGCAATAATCAGGTGTTTGTCCGGCTGAGCGGCATTTTATTGGAGCTTTCGTGCATTATGGAA CTAAAATGGAGATGGAGATTTGGGAGCGGTGGGACCCCTCGAACTTTGATCCGAACGAGATTACG TGTCTTGACAGTGGTGTTTGGTGGGGTGAATTATCAGGGAATCGAAATCGGAGCTGTTATCCGTA GGCCTGCATTATCAGCAACGCGAATGCCTAGCCCCACTTCAGCGAAAGCTTCCCGATCCACTGAG AATCGGAGTGGAGCTTAACCGCTCATTTTGCTCACTGGGGAGAAG Found at i:7108047 original size:11 final size:11 Alignment explanation
Indices: 7108031--7108053 Score: 39 Period size: 11 Copynumber: 2.1 Consensus size: 11 7108021 TGGAAAAGTG * 7108031 TATTCAACGGA 1 TATTCAACAGA 7108042 TATTCAACAGA 1 TATTCAACAGA 7108053 T 1 T 7108054 TTGTAGGCCA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.39, C:0.17, G:0.13, T:0.30 Consensus pattern (11 bp): TATTCAACAGA Left flanking sequence: Indices 7107531 -- 7108030 TGTTAGCGGTGCATCGTTAATGGATCTTCGAGTGTGTTTGTCCAAACCGCGCTTCGAACGGGGTT CAAAGTCGAGGGGAAGATTTCCTAAAACTTCGACCTTGAGCCATCCATCTATCCTGTTTGACGTA CGTAGTTTAACTTAACGAAAAGCTTTAGATAATTGGCCACGATTTTTCACGAATTAAGTTGGGTT TGTTTAAATGCAATCGCAACATCATCTGCCGATAGCAACATGTTGCTAGTGGCCAGTTGCTAAAT CGTGCGCAACAGGTGAATCAGCAACATCGCAACAGCAAAGAAAAGGAAGCAGACACAAGAAGCAG CCTCTACATCTACATTTACATTTACATCTACAGCCACCGCAATAACAATAACATTGTTTTTTGTT TATGAATGAAAAGCGCAAAGGCAAAACAGCGATAAACTGGTGTGCGGCTAAGAAGACCAGCAAAC TGGGGTAACAAAGAGGAGCCGACTAGGACACACCCTGGAAAAGTG Right flanking sequence: Indices 7108054 -- 7108553 TTGTAGGCCATTAAATTAAGATTTCAATTAAATAAATTATCACAGTTTACAAATTTTTGTTTTCT TATTATTTGAAGGTGTCAAACCTTCTATGATTTTTAATCACTTCATATGTGTGATTCCTGTTTTG CAACCGGAAGTGGATTAAATGATTTCACTGCACACTTTTAGGCGCTCAAGAAAAATTCCGACCTC TACAAGTTTTCGATATAGAATGTTGAGTTAAAAAATCACAGTTGCCTTGAAAACCGATACACCTG TTCTGCGAAACGGTAGCAAAGGTGCTGAGAGAGAGTCCAGAGAGTGATAGAGAGAGCCAAGAGAG AGCGATCGTGCAAAACAAACAGGCAACAACAACAGGCACACCGACCACCACACCAGTCTCGGCCA TTCCGAAAAATAACTCAGTTCAGTCTTCATTCGGGCCCAAACGCGTTCGCTTGGCCAGCGGCTCG TATCCGTCGCTTTCTTCGCCTATCGGTGTGTGCGTGCGCCTGCCT Found at i:7112034 original size:14 final size:14 Alignment explanation
Indices: 7112010--7112055 Score: 57 Period size: 14 Copynumber: 3.4 Consensus size: 14 7112000 GCAACTCTTG * 7112010 GTTTT-GGTTTTTA 1 GTTTTCGGTTTTCA * 7112023 GTTTTCGGTTTTCG 1 GTTTTCGGTTTTCA * * 7112037 GCTTTCAGTTTTCA 1 GTTTTCGGTTTTCA 7112051 GTTTT 1 GTTTT 7112056 TATTTGAAAA Statistics Matches: 26, Mismatches: 6, Indels: 1 0.79 0.18 0.03 Matches are distributed among these distances: 13 5 0.19 14 21 0.81 ACGTcount: A:0.07, C:0.11, G:0.22, T:0.61 Consensus pattern (14 bp): GTTTTCGGTTTTCA Left flanking sequence: Indices 7111510 -- 7112009 CCCCCCCCCTGCGATCTTGGGCCCGGGGCTTCGTGTGTATTAACCTGCCGCACCGGTTTCGGTTT ATGTTTTAGCCAACGCCATCATCCATTACTTATACCCGAGCTCGAACCCCTTTTTTCATACATAT GTGTGTTTCTATTTCTCTTTTAATTTTCTCTCGGGCGCTCAAAGTTGCTGCTGCTGCTGCTGCTG CCGCTGCTGTTGCTGCGACTTGTTGCTGCTTCTTTATTTATTTTTTAACCAGTTTTTCTGTTTGT TGTTGGTGCTGCAACCTGAGCGCGAATGAGCCATAAATAACAACAACCACAGCAGCCCAGTCGCT GTCTTCTGTCCCGATTTCCAGGAAGCAAATGTCTGTCCGTCCGTCCGTCCGCTTGTCGGCTTGTC CGCCCGTCGAGAGGCCCGAACCCAAACCCAAAGCAACCCGTCCCGTCTGCAATTCGCGTGCAGAG CCGCTTTGCCCGCCTGACTGGCCTCTATGGATTATGCAACTCTTG Right flanking sequence: Indices 7112056 -- 7112555 TATTTGAAAATTTAATAACCCAGGCGCGTTGGCGTTAGCGTCTGCTTCCTTGATGGCGCGACAGC CGCGCGAAATGACTTTTCTGCCAGCTCTTTTCATTTCATGTTTTTTTTTTAGCGCCCACGGATTT GGCCAGCCAGCAAATTCCCGGCTGATCCGCTAAGTCGCGTCTAATCCCTTGCCGGAATTTTGCTC ATCTAATCAAAAGACCTGCATTCCACGAAGGTCCAAAGAACTCGACGGCAAGTTGGCCAAGAATT TACCGGTGCTATCAGCGGAACCAACAAGCGGCCAACTGCAAGTGGGCAAACACAAATAGCGTTTG CGGGAAACCCCACGGAAAACAGAGCCGCCGAATCATTTTCGCAGAATTTCTGGCCGGCCATACGG TGCAGATTCTTGGGTAAACAAACTAGCTTGTGCAATTAATGTGGGCCAATCATGGACTCAATGCG TATTAGTTGAAGGTTCCATAAAGATAATTGACCCAAATTTGTTTG i:7115638 original size:18 final size:19 Alignment explanation
Indices: 7115602--7115641 Score: 59 Period size: 18 Copynumber: 2.2 Consensus size: 19 7115592 CCTTCCCCGT * 7115602 ACATCCCGCACATAAACAC 1 ACATCCCGAACATAAACAC * 7115621 ACATCCC-AACATACACAC 1 ACATCCCGAACATAAACAC 7115639 ACA 1 ACA 7115642 AACACATCAC Statistics Matches: 19, Mismatches: 2, Indels: 1 0.86 0.09 0.05 Matches are distributed among these distances: 18 12 0.63 19 7 0.37 ACGTcount: A:0.45, C:0.42, G:0.03, T:0.10 Consensus pattern (19 bp): ACATCCCGAACATAAACAC Left flanking sequence: Indices 7115102 -- 7115601 CGATCTCCATACCACAGTCGGCAGCGGTGGCCACTTTGCCATCGACGCAGACACAGAATGCGGTA TCCGTCCATCATGCCTCGCCGGCGCTGCCCCAATCCGCCAGCAATGGTCATGCCAAGTCAGTGAT GAAACTGCCAGTCAACGGAAATGTAAGATACATCAAAAGGATAAAGAAGAATATTAAGTGATGTT AAATCTATTTTCCAGAGCGAGGTAATCGTTTCGGGACCCACCACCAATGTGGCACCTCGGCGCAG CGATAATACCAGCAGGACCCTACTGAATGCCAACAGTGTCATGGACCAGCGGATGAGCACCTTTG AGCCATACCAGATTATGCGTGATCCTGTTCAGCAATTCTGCGAGAAGAACTTCAATTCGATCAAG TCCTACATGGATGAGGTATCGCAGCATCTGCCGCCGCCCACACGTTGCAGCATTGAGGGTAAGTC CTTGGAGCCGCAATCCTTTCCCTCAATCTCTAACTCCTTCCCCGT Right flanking sequence: Indices 7115642 -- 7116141 AACACATCACACAGTTTCCAATGAATTTGCAGAGCGTCGTACCAAAAAGGTGGCCAAACTGCATT TCGCCTGCCAGATTCGTGGTCCCCATTGCCTGTACTCCAAAACTTGCTTCACGATGCGAACTCGG AACCCCAAGACCTGGATACATATGATGTTCCTGGACTTTCAAGTGCGCCATTTTGTGAGTGCTCT CAACTTTTCACCTGCATTAGGTCCTTTTAATTTTGTATGATTTTTAAAATTTAGGTGAAGGAGAA GTGCGTGCTTAGCACGCGGGAGTCCGGCATTAGCAATCTCAAGAATATTTGGCAGATACTCAAGT GCGAGAACCGCAGCTTCACCGAGCTGGTTACCAGTCAGTTTCCTCAGGTTAAGGTGGGTCAATAC CTCTTCAAAATGCCATAAGCTATAGTATCTCTTATACAATATAATTTTTCAGGACCGCGAGATCC TGGTGAACGAGCTGCGTCACTCGGGCTTTCTGGATGTGTTCGAGG Found at i:7116833 original size:11 final size:11 Alignment explanation
Indices: 7116808--7116858 Score: 39 Period size: 11 Copynumber: 4.9 Consensus size: 11 7116798 TCTGCCGACT * * * 7116808 ATATACACACC 1 ATATATATACA 7116819 ATATATATAC- 1 ATATATATACA 7116829 A-ATATAT-CA 1 ATATATATACA * * 7116838 TTATATATATA 1 ATATATATACA * 7116849 TTATATATAC 1 ATATATATAC 7116859 CTTGGGCCTA Statistics Matches: 32, Mismatches: 5, Indels: 6 0.74 0.12 0.14 Matches are distributed among these distances: 8 1 0.03 9 6 0.19 10 7 0.22 11 18 0.56 ACGTcount: A:0.47, C:0.14, G:0.00, T:0.39 Consensus pattern (11 bp): ATATATATACA Left flanking sequence: Indices 7116308 -- 7116807 GCGCTGGCGAACGCGCTACTTCACTTTGTCCGGAGCGCACTTGTCCTGCAAAGGCTCTGTGAGTA TATCGATAGACAAACTTAATCTTAAATCTTACTAAATCTTAAATTATTTCAGAGCGGAGGTGAGA GCATCGATGTGAATCAGATACGTTCGGTAAAGGTATCTCGTGGTGCCCGTAACATACCGAAGGCC TTCGAAATCTTCACCGCCGACCAGACATTAATACTCAAGCCCAAGGACGGCAAGAATGCCGAGGA GTGGGTGCAGTGCCTCAGCATCGTGGTAGCCCACTCGCAGGCCCGAGATAATCCCACGGCCAAGA CGAACAGCCTGCCCGCCCGCAGCATAGGCAGCAGCAAGCCCTCCTTCTAGGATTCTAGGATGCGA TGGCATCCAAAAACCCCATGTGAGATTATTTGTAAATGTAAAGACAGAGCAACGGCAACACACAA AAGACAAACAGACAAAGGATCGGCGAGCACAGGACTCTGCCGACT Right flanking sequence: Indices 7116859 -- 7117358 CTTGGGCCTATGTCCTTAGACTTAACTAGCATGTACTTACCATTTCAAGGGATTTCAAAAATTTT GCGAAATTGTTTTTATCATTTATAGTTGATTTTTATACATATGTATTTAGTTTATGCTTATTTAT TGTACGTGTATTAAACAAACAGCTTGCTTTCGCAATCGAATGCTTCAGTTATTTTCAGTGCGCGA GGTTTGGCTTTAACAAACCCGTTTTTAATCTCCAACTAATGACTGAATGGCGAATTGTAGCTGCA ATCATAATTTTGGCAATGCGGCAAGGAATTCATCGGTTTGAGGTGTGCCATATCTCAAAGGATAT TTGAGGCAATTTCACATAAGCAATTGTTCGCTTTCAATATCAAGCTAAACTTATTCTTAATCTGT TGCGCTATATTATCTTAAATGGTGTGGCATGATGGAGTTCTTTAGTTTGAAGTGCTACTCAACAA AGTCGAACTTAACTCTAGGAAAAAATTTAGTTCTAGCAATTTTCA Found at i:7116835 original size:13 final size:13 Alignment explanation
Indices: 7116807--7116858 Score: 40 Period size: 13 Copynumber: 3.7 Consensus size: 13 7116797 CTCTGCCGAC * ** 7116807 TATATACACACCA 1 TATATATACAATA 7116820 TATATATACAATA 1 TATATATACAATA * 7116833 TATCATTATATATATA 1 TAT-A-TATACA-ATA 7116849 TTATATATAC 1 -TATATATAC 7116859 CTTGGGCCTA Statistics Matches: 30, Mismatches: 5, Indels: 6 0.73 0.12 0.15 Matches are distributed among these distances: 13 13 0.43 14 1 0.03 15 9 0.30 16 4 0.13 17 3 0.10 ACGTcount: A:0.46, C:0.13, G:0.00, T:0.40 Consensus pattern (13 bp): TATATATACAATA Left flanking sequence: Indices 7116307 -- 7116806 GGCGCTGGCGAACGCGCTACTTCACTTTGTCCGGAGCGCACTTGTCCTGCAAAGGCTCTGTGAGT ATATCGATAGACAAACTTAATCTTAAATCTTACTAAATCTTAAATTATTTCAGAGCGGAGGTGAG AGCATCGATGTGAATCAGATACGTTCGGTAAAGGTATCTCGTGGTGCCCGTAACATACCGAAGGC CTTCGAAATCTTCACCGCCGACCAGACATTAATACTCAAGCCCAAGGACGGCAAGAATGCCGAGG AGTGGGTGCAGTGCCTCAGCATCGTGGTAGCCCACTCGCAGGCCCGAGATAATCCCACGGCCAAG ACGAACAGCCTGCCCGCCCGCAGCATAGGCAGCAGCAAGCCCTCCTTCTAGGATTCTAGGATGCG ATGGCATCCAAAAACCCCATGTGAGATTATTTGTAAATGTAAAGACAGAGCAACGGCAACACACA AAAGACAAACAGACAAAGGATCGGCGAGCACAGGACTCTGCCGAC Right flanking sequence: Indices 7116859 -- 7117358 CTTGGGCCTATGTCCTTAGACTTAACTAGCATGTACTTACCATTTCAAGGGATTTCAAAAATTTT GCGAAATTGTTTTTATCATTTATAGTTGATTTTTATACATATGTATTTAGTTTATGCTTATTTAT TGTACGTGTATTAAACAAACAGCTTGCTTTCGCAATCGAATGCTTCAGTTATTTTCAGTGCGCGA GGTTTGGCTTTAACAAACCCGTTTTTAATCTCCAACTAATGACTGAATGGCGAATTGTAGCTGCA ATCATAATTTTGGCAATGCGGCAAGGAATTCATCGGTTTGAGGTGTGCCATATCTCAAAGGATAT TTGAGGCAATTTCACATAAGCAATTGTTCGCTTTCAATATCAAGCTAAACTTATTCTTAATCTGT TGCGCTATATTATCTTAAATGGTGTGGCATGATGGAGTTCTTTAGTTTGAAGTGCTACTCAACAA AGTCGAACTTAACTCTAGGAAAAAATTTAGTTCTAGCAATTTTCA Found at i:7118391 original size:11 final size:11 Alignment explanation
Indices: 7118371--7118394 Score: 41 Period size: 11 Copynumber: 2.2 Consensus size: 11 7118361 GAGATGTCGT * 7118371 TTGTTTGATGA 1 TTGTTCGATGA 7118382 TTGTTCGATGA 1 TTGTTCGATGA 7118393 TT 1 TT 7118395 CAGGTGATGA Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 11 12 1.00 ACGTcount: A:0.17, C:0.04, G:0.25, T:0.54 Consensus pattern (11 bp): TTGTTCGATGA Left flanking sequence: Indices 7117871 -- 7118370 AGGACGCGGGAGACGTGCTCCAATTGATTGGCATAGATCCTAAGGCGTTCCACATTGTTGTTATG CTGATGAGGAGATTGGACCTGCAAAATATACTATTTTAAATTCAATTTAGGTATAGATGATCACG ACTCACCTGAGTACCATTGGCTATTTCGAGATATCCACGCACCCGTGGGTCCTTCAGCTGCCCAC CCGCCTGCCACATTTTGAGCAGATTTAGAATACCGAGGACATCGCCCTGGTCGGAATCCTGGTTG GGAGAGAGCAGGCGCATGGGCGGGAACTCGGTGGTGGGCGACAGCTTCTTGTAGCTGCTGCAGAG TGTGCTCAGTGTGCAGATGTCCTCGTTGAGGCGCTGGTCAGGATTATTGGATGATATGCAGTTGT GAAGAAGCAGCAGCGTGGTGGTTACATGGCAATTAGTTTGGGTTCTCATTTTAAACGAAATAGTG CACTTTTAAACTTGATTTGGGACTGTCGTACCATCGAGATGTCGT Right flanking sequence: Indices 7118395 -- 7118894 CAGGTGATGATGAAATAAGGCGAAAGAAATTATATCGAAAGTTCGTTCAATAGCTACGACTAAGG CACAACTCAAGATGTCAATAAGCCAAGTAATTTATTCAAAATTAGAACTACAACTAAACTAAATC AATCAAATAAAATAAGATCGCGATCGAGATTGGTATACAAAATATGAGAGTATATATCTGACGGT AAACGATAACGGATATATATAGAAATGTCTTCGAAGGATGCGCAACAGAAAAGTCCACAAAATGC TTAGCGGCAATCAAGTCTTAAAACCTTACGTCGATCTCGTTGCGATGGCGCTGCATTTCGGCCTT GGCGCCACTTAAGTCGCTGCCCTTGATCATCAGCTCCTGGGTGGCATCCATGAGTTCGTCCTGCA GCTTCAGGTTAACGTCCTCCAAGTCTTTTAGTTTCTCCAGCATGTCCTCCTTGTGCTGCTGCAGT TTGTTCCTGAAACACATAATTTATTAATGAGTTGCTACTCAAAAT Found at i:7120463 original size:12 final size:12 Alignment explanation
Indices: 7120439--7120466 Score: 42 Period size: 12 Copynumber: 2.3 Consensus size: 12 7120429 GCATGAGTAG * * 7120439 ACTGTCATGACC 1 ACTGCCATCACC 7120451 ACTGCCATCACC 1 ACTGCCATCACC 7120463 ACTG 1 ACTG 7120467 TCCTCCGACG Statistics Matches: 14, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 12 14 1.00 ACGTcount: A:0.25, C:0.39, G:0.14, T:0.21 Consensus pattern (12 bp): ACTGCCATCACC Left flanking sequence: Indices 7119939 -- 7120438 TAGGAGTAGACGAGCTGTTCCACTAGACCATCCAAACGGGAGTGTAGTCCCGAAAGGGCTGTGGA TGCTCCAGCTACAGAGGCATTCTGCTGGTGGATGAGCTCCCGAGATTTGTTCTCCAAAGCGGTAA ACTTGGTCTGGAGCAGACGGTTCTCCTGGCGCCTCTGCTCATTGAGTCGCACAAGATGCCTGCAC TCATCCCGCAGTACCTTCGCCTCCTCCTCGCGATTGGCCAACTGCAATTTGACGGCTTGATAATC CGCTTCCAGATCACGCAGAGCATCGCACTGAGCTGCCTTCTCGTGCTGCAGGAAGTCCTGCAGTT CACTTGATTCCTGTTCGATGGCGGCCTTCTCTTGGAGCAGCAACTGTTGCGTGGCCAAGGATCTT CGCATCTCCAACTGCAGAGCGCGACACATGGACCTTAGCTGACCTATCTCCTGCTGGCGCTCGAA AAGCTCATGGCCACTGATTTGGATCTGGGACTCCAGCATGAGTAG Right flanking sequence: Indices 7120467 -- 7120966 TCCTCCGACGTGGGTGTTCCCGCACTGGCACTGACCACTCGAGCCAGCTCCAACATACCCATCAC TCGCTCTGTGTTCAGATGCAGCTCCTGCTGCATGGCCAGTTTCTCCTCCCGCTCCCGCTGCAGTT TTCCACTGAGTTGGCGCACCTCATGACGCAGTTGCTCCAACTCGAATTCCCTTTGGTCTGGCTCC GCTTGGGTGCTTTGATTCCGCTGCTCTACGGCGTCCACGGCACGAGTTTGCAATAGTCCGCCGCC CAGGACTTGCTCCAAATCCTCACTGGTCAGTGCCGTTTGCACTGCAGTCTCGTGATAGATTCGCG TCCTGGGCGTTGCCGGTTGAGGTCTTCTTAGGGAATTGACCTTAGCTGCGGCGGGAGCCAAGCTT CTACGACTCGTAGGAACCACCATTACCGAGGAAGTCATGCGGGCATCTACAATTGCTGCACGGCT GATAGAGTTGCTCCTCGATAGTCGTCCCCCAGTGAGATCCTCCAC Found at i:7122807 original size:12 final size:12 Alignment explanation
Indices: 7122784--7122807 Score: 34 Period size: 12 Copynumber: 2.0 Consensus size: 12 7122774 ATTTTTCAAT * 7122784 ATTTCTATATCC 1 ATTTCTAAATCC * 7122796 ATTTTTAAATCC 1 ATTTCTAAATCC 7122808 TTCATATAAG Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 12 10 1.00 ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50 Consensus pattern (12 bp): ATTTCTAAATCC Left flanking sequence: Indices 7122284 -- 7122783 ACGATTGACTTGAACTAGTTTCCGTTTCGGAGAGTGACACGACACGAAATGTGCACCTGCCGACA TTACAACAAAGTGGGCCATCGCCGGGGGTCTGTCGTAAATAAATTATGAGGAGCATTGTCTCGTG GGGTCGTCATCGTCGAAATAATTGAGATTGCCACCACACATTTTACACATTTGTGTGGCTGTGTG TGGCACGTTGACCCAACTGACAGACGGCTGTGGGCCATCATTGCGGAACTTTCCAAACTCGCATC CAATTTGGCATGCCACATTGTTGTGCCAGAAATCCGCTTCGCAATTCGCACTTTATCACATCCAT CATCATTCTAGTTGAGTCACATTAAGATTCATACGAGACCAGGTCATAGAGGTGTTGTTGTTTAT CGAAAAGTGGATTTTAATTTAAAAGGTGTAAATAGTGCTAAGTAAAGGGTGTATTTATTTTTAGT TAATGGTTTGTTCTGATCCTGACTTGGGTAAACAAATTTTTCAAT Right flanking sequence: Indices 7122808 -- 7123307 TTCATATAAGGGCATATATCCTGTAGTGTATGGGTATTTCGGCTTCATCACCAATTTAAGTGATT TAAGTTTGAAATTTCCCGCTTGTTTGGCTTTGCATTACAGTCCCAGTTAGACACACGTCATTAGC GTCATGTTTGTTATGCGATCTCCCAGAGATTTTGGGCCAATTTTGATGATTTCATCACGCAGGTG AGGTGACTGCGAAGGGAGATCTTAATGACGTTGCTCCAGTTTTCAGCAAATTGGAAATTTATTTG AAGCGAATTACAGTAAATTGCTGGCCAGACCCAGACTTGGCCAATTGCCAACCGGTTTGGCAGGA ATGCCCTTCATGCTCTTTTCCTCAACCAGCATTATTTTTTTTTCAATTTTCTTCAGCCAGAATGG AAGATCCTGCAAACGACCTTGTTTACGATATGTTAAAGGCTGTCTCAAGTCGTGCCCGCCACTCG GTCGATGCTCGAGTTGACTTTAAAGAGACGTTGCAGCCGGCTTGG Found at i:7127955 original size:13 final size:13 Alignment explanation
Indices: 7127937--7127965 Score: 44 Period size: 13 Copynumber: 2.2 Consensus size: 13 7127927 CATCTGGAGA * 7127937 CGCCTGAAAGTCT 1 CGCCTGAAAGCCT * 7127950 CGCCTGAGAGCCT 1 CGCCTGAAAGCCT 7127963 CGC 1 CGC 7127966 TCATTGTCAA Statistics Matches: 14, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 13 14 1.00 ACGTcount: A:0.17, C:0.38, G:0.28, T:0.17 Consensus pattern (13 bp): CGCCTGAAAGCCT Left flanking sequence: Indices 7127437 -- 7127936 ATGCGAGTAGAAACAATGAGTGGTGTACTTCACGCTCTGCAAAGTTTTTCAGCGGCATGCGCCAC ACGACACTCCGCTGCCAAAAGTGGCCTAAAGGGGGTGGAAGAGGGGCGGGGCGGTCTTGACCATT GACCAGCAACGCTCAGAGTTGAGCTTGACTGGAGGCAATCCATAAAGCCGAGCCAAAGCCATGAA AGCACACCGCAAAAAATGTATGCCTTATCAACGTAATTCTCAGTAATGCTAAACTCAAATCGATA TATATGGCTAAGTAATGACTTTCAATATATTTTTAGACTTTTAATTACTTTGATATGATAACAAT ATACTCTCACTGTAGATAAGTGTCTGTATTTTCGATATAAGAAAAGTGAACTGTAGATATACATA CAACCAAACCATTAGAATAGAACACCCATACAAATTCAATTTTTTCTCGCAGTGCATGCAACGCC GAAAGCGGCACAGACAAAGCGAATGGAATGGAAAGCATCTGGAGA Right flanking sequence: Indices 7127966 -- 7128465 TCATTGTCAACGCGCGTCTCGAGTGTGTCTTGGCAAGGTTCCAGTCCAGGCCGGGTTTTCGTCTC CAGAAGCGTTCTCTCAAGGCATAAACCTCTGAAATGGTATAGCCGAATGGCCATTGTCTGGAGAA AGACGAGATGATGAGGCTGCAGCTTGAATTCAGCTCTGTTTGCCCTCGTTTATCGTGTTTCCATG GGGTTGCCAAATCACAAACGAGGCGAATCTGGCCATTCAACTGACCTTGAAAACCAACCCAGACA TGTGTTCGCTTATGAGTCCGTTACTGATTATAAACAATGCAACATTTGAACAAGGGGTACCAAGC GGAGTGTGGTGTGTCGCCAAAAACAGGCTCAAATCAGTGAGCTGCTAAATTTCGCACACTTCAAA AACTTGTTTATCATAAATTACGGCCATTGTTATTGAGATACCCGCTAATCGGGCACATTTGTATA TGTATATCAGGGGAAACACATTGAAAATGCAATGTGTTATTATCT Found at i:7129090 original size:12 final size:12 Alignment explanation
Indices: 7129073--7129103 Score: 41 Period size: 12 Copynumber: 2.6 Consensus size: 12 7129063 TGTCAAGTTG ** 7129073 TGACTGTTTGAC 1 TGACTGAGTGAC 7129085 TGACTGAGTGAC 1 TGACTGAGTGAC * 7129097 GGACTGA 1 TGACTGA 7129104 CATTAAATTG Statistics Matches: 16, Mismatches: 3, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 12 16 1.00 ACGTcount: A:0.23, C:0.16, G:0.32, T:0.29 Consensus pattern (12 bp): TGACTGAGTGAC Left flanking sequence: Indices 7128573 -- 7129072 GATTTGTTCGACGAGTGGAAAGTACAAGAACGGTGGCTTGCTTGCTTCTAGCGGCTCTTGCACCG GAAACTGCACTAATTGATGCTTAATTAGCGATTTCCTCAGCTCACTCTCCATTACGACATCCCCC ACTTCAAGTCGCCAAGTTGTCGCATTATGGAGTAACGGCTAACATGTCCGCTGCTCCATCAACCG GGGCGCTTATGAATATGGTAAACGCCATTTAAGCAGGCCGGAAAAATGGTAGCATATACCAATTA TTAATTCAAGGAAATGGGAATCGATTGAGCACATTGATACTATTTACTTGACAAATGTATATACT TTTCTAAGTAAACTTAAAACGCAATTGCTTGCCTAAATCCATGCAAACATTAAGTATTACCAAAC TTTTTAAGCAAAAAGTTTGGTTTTTGCTACATTTCCCTTTGTATCTTTAATGCAAAAACGTCATG CTGACCTCCATTTTGCAGCATAACTTTTTGCAGTGTGTCAAGTTG Right flanking sequence: Indices 7129104 -- 7129603 CATTAAATTGCACTCTTCCTGATTGCTTCGTCGCTTCAAAATCGATTATCGCCGAAGTCATGCAA CTGAAATTATATTCACCGCTTGCCACATCCATATATGTATGTACATATGTACATACGTATATACG CTTTTACATACAAAGTTAACGCTGCATAATGAAGCGGACTACGTGGCTAGGATACAAAATCCGGA AGCCCCTCAGTCCGGCGGTCCTGACCTTTTTAATTTCAGCTAAAAACCAAAGCCGCACGACGCCA ACACACCTCTGACCCACCACAACCACCCTCTCGCCCACACGACGATGTGGCTTCAACATAAGACG CAGCTCATATTCGATAACCACTTTCTACCCGCCAATGAGTTACAGTGGAGATTGGGTAAGCTTAA CTTTTATCCTGATACAAAAAACAAAATATTTGCTTAAATTTGGCTTGTTACATAAGCAAAACTTT CATTTTCTTCGTAAAGAAAATTAATTGTACTTAAATGCTATGGAA Found at i:7131132 original size:11 final size:11 Alignment explanation
Indices: 7131116--7131137 Score: 44 Period size: 11 Copynumber: 2.0 Consensus size: 11 7131106 AAATCGCGTT 7131116 TTAACAGTCTG 1 TTAACAGTCTG 7131127 TTAACAGTCTG 1 TTAACAGTCTG 7131138 GCGTATCACA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36 Consensus pattern (11 bp): TTAACAGTCTG Left flanking sequence: Indices 7130616 -- 7131115 GAAGCGAGTCGCTTTAATTTAGTTTTTCAGCCTTGTTTTTGCTGCTTACGAGGAAAAAGACAGCA AGGCTTCGTTGAAAAACCCGTTCGGCGCGCAGGAAAGTCGGAAAAACGAAAATCGTATAGCGGCT TGGTAACAAAACGCGCCCACTCGCGGAAAACAACAAGTTTAAATATTAATTAAATCGATTTATAT TTACTAAATCATAATATACATCGCTATTACTTCATGTAGGCGAGCAGAAGCACACTCCACGTCGA ATTTATTGTTCGTTTGCTTAAAAAATCAGTTTCAATTGCCGCAACTCCGTTGGCATTAAAGTTAT AACGATGTTTCTTTAATAATATTTTTTAATGGTAACCGAAAAAACAGCGCGCGCTGCTGCGCTCT CCCGAAAAATTACAGAGAGAATGCGTTGCGAGCTGCTTATATAGATTTTTAAAATATCAGAGAAA CCAAATGATGGTAATGTAAAAATACCAAAGCCGGGAAATCGCGTT Right flanking sequence: Indices 7131138 -- 7131637 GCGTATCACACTGTTAATTCTCTTCAGCGGTTAAATGTATCTATTGGATGCGCCAAATATATCTT ATCCATATTAACAGCTATTTTGATTAAGAAAACTTAGACTCGTTTAGTTTTATTTAAAATTTTTT AATAGTTTTGAATTATTATACCTTTTGTCGATTTTTAAATATAAGTAAACGTAAGGAATGATTTT AACCGCTTGTGGTTAAGACTGCATATTTTGGCGGGCACAATTCAAAAGCAATCATGAAAATACCA CAATAAAAATACTAGTCTCAAGCGGTAATGTCTTATACGTAGTCTTATACCTTAAAATTAAATAG CAGTTCTGTAAAATATTTAACCGTTTAGTATTTCTAAAATAATGTGCTAAACCTGATTTATGCAA TTATTAAGATCCCAAAACATTTTCAAAAAATTGTGTAAATTTCTTAATACTTTATATTCTTAAAA TTTTCGATGATTTAAAACGATAAAATAATTGTTTTAAAATTACAC Found at i:7132662 original size:12 final size:12 Alignment explanation
Indices: 7132638--7132665 Score: 42 Period size: 12 Copynumber: 2.3 Consensus size: 12 7132628 CCGGTCTCGC * 7132638 GGTCGCTCCCGT 1 GGTCACTCCCGT * 7132650 GGTCACTCGCGT 1 GGTCACTCCCGT 7132662 GGTC 1 GGTC 7132666 GTTCTCATGG Statistics Matches: 14, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 12 14 1.00 ACGTcount: A:0.04, C:0.36, G:0.36, T:0.25 Consensus pattern (12 bp): GGTCACTCCCGT Left flanking sequence: Indices 7132138 -- 7132637 AGTAATTAAAGTGTTGAGTGAATTTCTTATCGGGTCAGTTGTAAACTAGTGCAAAAATGTCGCAA TCCGATAACGTGGCACGTGAGCAAACTGCGGCAAATGCAGGGCCGGATGCATGTCAAGGATGCCG CGGCCAATTGCCAAATGCCACGCCCGTGGAAGTCGAGGACATGGCCTTGCCGTCGATGGAGCGTC TCATTCGAAAGGCCAACATGGCCCAGAAAATGCTGAACGATGTGATGAAACAGATCCAGAAGCAG CAGCAGCAGGAATCTCAACTCTCCATCAAGGAGACCAAGTCCAAGCACCGCAGCTCCGATGGAGG TAAACGACGACACAGAGGACGCAAACATCATAGTCATAGTCATCACACTAGCTCATCTTCCAGTT CCAGTTCCGACCACAGTGACTGCGAGCTGATCCTGGCGGAGAAGGAGGGGCACATGCCGCGGAGA AGACACACGCGAGATGACCGCAAGCGGGATCGTTCCCGGTCTCGC Right flanking sequence: Indices 7132666 -- 7133165 GTTCTCATGGGCGTTCTCGTTCCAGGTCCTACACCGATTCCCGACGATCTCGAGCACTACCCCTG GCTCTGCCCGTTCGGATTTCAGTGTGAGTATCTGGCTTCATTCAGTATTATTCAATATTCATTTT ATATATTAAGTGCGCATAAAAAAACCAAAAAAAAAAAAATAATAAAATATATAAAATATGAAAAA AATATTCAAATGAATTCTTTTTAATGGAGGGTGGGCTTATCTTTATTTTGGGTGCAAATAATACA TACTGTTCAGGTATTCAAGATAATAAGTTACATTCGTTGATGAAATGCTGATTTAATTTAGCATT CATATTTACCAAAGTTGTGAAATATTTGAACCATTTTTCTGAGAAAATAAAGTTCAAAGTTTTGG AACTGTAAAAAGAAGTTTTTATCTTACCTCCATCAGCCGATTAACAAATAAACAATCGTTTGTTA TTTTTAAATATTTCTTATATTTTTTAAATGCCGTTTGTTTTTACA Found at i:7133775 original size:12 final size:12 Alignment explanation
Indices: 7133750--7133775 Score: 38 Period size: 12 Copynumber: 2.2 Consensus size: 12 7133740 GTTCAATTCG * 7133750 TCCCTCTGATCC 1 TCCCTCTAATCC * 7133762 TCCTTCTAATCC 1 TCCCTCTAATCC 7133774 TC 1 TC 7133776 ATCGATTTTA Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 12 12 1.00 ACGTcount: A:0.12, C:0.46, G:0.04, T:0.38 Consensus pattern (12 bp): TCCCTCTAATCC Left flanking sequence: Indices 7133250 -- 7133749 TGTTCTCGTTTTGATTGTGATCTATTAAGTTAATTTCATCTTTTGATTTGTAGACTTTGCTGTGA GTTTGCTCCTTGCAGTCGCAACTTTTCTGTTGTTCTTAATAAATTCGTAAAATTCGATGTTAAAT GTAATAAACCATTTCATTGCTTCGTACAAATAAATGCATATAAAAACCGACTAAAATCGCGTTAA TCGCTATATAAACAAAGAGTGCTGCTGGCTCGTAAATTTTCGATTTTGTTTTTTGCTTTTATTTC AAATGAGACACTAAAGAATTATGCTGTCTGGCTCGGGTTGGAATAAATTTTACCCAAGTGAACAC CTTAATCTGCGACTTTATTTTGTGATTTCTGTGGCTCTAATTGGTATGTTCATATTTAGTGGCTG CTATTTACTCGCTTTTCATGGCTTGCATTATTTATTGTATATCCGTAATTTAAGAGAGCTTTGTC TAAAAACAAATTTTGGCACATGGTTTCCGAAATGGGTTCAATTCG Right flanking sequence: Indices 7133776 -- 7134275 ATCGATTTTATTTGACTGTTTAATTGGTTTCCTTATGCTTTTTTAGGCTAGTTAAAATACAGCTA TGTACTCGTATTACTTTTGGATTATTCGATACGAACTAAGAGTTATATTAATTTGTAGTTTGTTT GTCTGCTCCTAACTTGGCTTTCGTTCCATTCGCGTCTGCTTGATTGAGTTTTTATGATAATTCGA AATTTAATTACGACTGGTATTTGATTCTCCTACAGGCTCATTCAATTTACTTTCATTAATTCGTT TTTAAAAACATTTATCTACAACTCGACGAATGACAGTTTATTGTAATGGAAACACTAATGTATGC GATATCATGTCAGATTATCTATGAATACTGCTTTCTTGAATTCAAATTCAGCTGGCGACATATTC GAGTTTGTGTACATCGGCTATATCGAATACATTTAGTTAACATTTTCATTGTGGCTTTACTTGTC TTTTGTTTTTTTTTTTTTTTCTATGTGAGTCATGCAACATTGTCA Found at i:7135395 original size:15 final size:15 Alignment explanation
Indices: 7135377--7135408 Score: 50 Period size: 15 Copynumber: 2.1 Consensus size: 15 7135367 TTGTTGGCGT 7135377 TGTTGTTGCAGTGGC 1 TGTTGTTGCAGTGGC ** 7135392 TGTTGTTGTTGTGGC 1 TGTTGTTGCAGTGGC 7135407 TG 1 TG 7135409 CGGTGACTTT Statistics Matches: 15, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 15 15 1.00 ACGTcount: A:0.03, C:0.09, G:0.41, T:0.47 Consensus pattern (15 bp): TGTTGTTGCAGTGGC Left flanking sequence: Indices 7134877 -- 7135376 CATACGTGGGTATATAGCATGCACAATCGTTAATACTTAGATATAGTATGACCTCTATAAATACG GGCAGGAGTTCATAATGGGAAGTGTTTCGATTCGGTATGTTTTGGTTTTTGGATGGTTGGTGCAG AATTTTGATACTGATTGTCCGAAAGTTTACTGAGTGTTCATCTGGTTGTTTCTTTTGGGGAGAGA GAAGGGTATTACTTGGTGCGGGGCTGTTCCGAAAGTTTGGAATTGAGGTTTATCATTTCAAGAGT GGTGTAATGGTTTTTAGGGGGTTTAGGGGGGGGGGGGGCGTCTTGGTAAGGTAACAAATGCATTA CAAAAATGTACAAAAACGGCCCGGCTGCTGCTAAATTTGTGGCTATCGGGGGGCCCGGTCTCATC CAATCTGCTGATCTTGCGATCAGATCTTACCAATGTCTCAGACGGATATCGAATAATCCGATTTC TCGCTAAGCAATTTTTGGCCAGGAGCGGGTGAATGTTGTTGGCGT Right flanking sequence: Indices 7135409 -- 7135908 CGGTGACTTTGAATGCGCTCGTTTGTGTGGTTGCTGTGGTGCCTGCTGCTGCTGCTGCTGCTGCT GTTGGTGGTGTTGCTGCTGCTGCTGCTGGTGGTGCTTCTGCTGCTGTTGCTGCTGCTGGTGCTCC TGCTGCAGCTGGGAGGTGGTGGATGAGGGTCGGGACCAGAGCGATGACCTCTGACCCAGCTTTAG CTTCTTAATCGTATCCACATCGACCTCAACCTCGGCCAGCTCGATCCGTTCGCCCAGGCCGCCGT CCTCTGTGCGATGGAAGGCGCCGAGGTTGCACTCGGCCTGCAGCTGGAGCGGATGCAGCGTGCGC AGGATGCCGGCCCTGGATGCGTGTTTTCATTCGGGGAGTGGGAGGGTGGTGGGTGGCAATCGTTG GGGGGTGATGGGGGTGCAAGTACAAGAAAGGGTCCAGAGTTGGTTTTCTGATTGCAACCACAGCA TTCAAGCATTCATTCGTTTATAGACCTAGTGGTGTAGTTCTAGTC Found at i:7136924 original size:15 final size:15 Alignment explanation
Indices: 7136902--7136938 Score: 44 Period size: 15 Copynumber: 2.5 Consensus size: 15 7136892 TTCGAATTGC * 7136902 TGGATGTCG-ATGGTG 1 TGGCTGTCGTATGG-G * 7136917 TGGCTGTCGTATTGG 1 TGGCTGTCGTATGGG 7136932 TGGCTGT 1 TGGCTGT 7136939 GGTGTTCGTG Statistics Matches: 19, Mismatches: 2, Indels: 2 0.83 0.09 0.09 Matches are distributed among these distances: 15 16 0.84 16 3 0.16 ACGTcount: A:0.08, C:0.11, G:0.43, T:0.38 Consensus pattern (15 bp): TGGCTGTCGTATGGG Left flanking sequence: Indices 7136402 -- 7136901 GAACTTGGAGGAGAGCATGGCCGTCGATGGGTTGAGCAGCGTGCCCGGATGCTGCTGCTGCTGCT GCTGCTGGTGGGGATGCGATTGCTGGCTGTGGTTGTGGTGGTGCGGTGGCTCATGCGCGGGCATT ATGGACTTGTGGGGTATGGGGCGGAATTGTGAAGAGGGCGGCATGCAGGCTACCAACGGGCTATT GCCGATCCCGTCCAGCCCCAAAAGCTCCTGGCCATTGGCCTCCAGCTGATGGAGCTTGGGCGTGA TCAGTAGGGGCTGCTGTTGCTTCAAACTACTACTGTTCGGATTAGAGCTACTATGCTGGGAATTA TTGGTACTACTATTCTGCAACTGCTGCTTATGGAACTGTTTCTGCTGCTGTGTACTGATCGATGG CGACTTGACCAATGTGGGTATGTGGCACTGTATGGAGTCTTGCGATTTGAACGTGCTCGATATGG ATTTCAGATTTCCGCCGCGCGGCGATAGAATTTTGTTCGAATTGC Right flanking sequence: Indices 7136939 -- 7137438 GGTGTTCGTGTTGCTGGTGGTGTTGTTGTTCATTTTGTTGCTGTTGTGGTGGCGCGGTGTGGTAT TGGTGGAAAACTGATATTGCTGATGATGATACCTGGAGCGACCGCGGCGGGGCAATGATTTCTGT TCGGACATTGGTGACAGATCGGAGGAGGTGCTTGATTGTGCTCCATGGTAGATGATGCCTACGGC GGAATGGATCAACGGATCAATGGTGTATCAATCGCAGCGCAGACGGAGATGTTAGTGGGGAAGAA AAGAACAGAAAAACAAAGAGCGGGCTGATAGAGAGTTTTTTTTCTTTGGCAGGGATAGATACAAT ACATAGATAACAAACGTTAACAAAACTTAACAACTAACTTAGCACTATCAATTACAAAATTGGGT GTCTTAGTCTTATTGGTTGGCCTGATCTGAGTATTTCGTGTGGAGTTTTGTTTGGTGCAGTTTGG CCTACTACAGATATGTTATCGAGATATTGTGGTTTGGAAAGTGTT Found at i:7138286 original size:13 final size:13 Alignment explanation
Indices: 7138256--7138287 Score: 43 Period size: 13 Copynumber: 2.5 Consensus size: 13 7138246 ACGTTGGTGG 7138256 TGGTGGTGGTGAT 1 TGGTGGTGGTGAT * ** 7138269 GGGTGGTGGTTGT 1 TGGTGGTGGTGAT 7138282 TGGTGG 1 TGGTGG 7138288 GTTCAGTACC Statistics Matches: 15, Mismatches: 4, Indels: 0 0.79 0.21 0.00 Matches are distributed among these distances: 13 15 1.00 ACGTcount: A:0.03, C:0.00, G:0.59, T:0.38 Consensus pattern (13 bp): TGGTGGTGGTGAT Left flanking sequence: Indices 7137756 -- 7138255 GGTCCTGGTCCGATTCCGACTCCTCGCTCTCCGGCTCCGTCTTCCTGGAGTGGCGCCTCCGATTC TTGGACTGCACATGGAACATGGAACAGCGAAAAATTAGTCTGGATCGGCATCTCAGTGCGGTGAA TTTATGCAGCTAGCGACTACAAAGCGCCTGGGGTTGGAACGCTTCTCGAACAAAAGAATGGTTAA CTCAAGATTGGCAGGTGACATGGATCCAGGGCGTTGAAGCCCCTTAGCATGATTTACGGCATTGC AATTAATGTGAACTGAAGGGCAAACAAATACACGAGCAACATGGAACAACATAAAAAGCACGTAG TAGTACACTCAGAAAAACACTAATGTGTGGCAGGACCACATTCGATCAATCGAAGTACTTAGTAG AAGGAGAGAGATAGAGAGCTAAATCAAAGAAATGAATAAACAAACGCACGATATTATGGAACGGT GAGGTCTGATAATAATTATGAATTGTCTTTAGTGGACGTTGGTGG Right flanking sequence: Indices 7138288 -- 7138787 GTTCAGTACCGCGGCTGGTGGTGGCGACGAGCAGCCCTCGGCCAGGGCCCGCTCGTGGTACATGA ACGAGTGGAGCAGCGTGTTGGCCGGACCGCCGTGGTGCGGCTGCGACATGTTGCCCCCAGCCTCC GACAGCTGGAAGGTGGCATACGGCGAGATGTCCTCGGAGGTTTCTGTGGAACAAGTCCTCGGGCG ATTAGCGCAGCTGATCAAGTAGCAAGGCAACAGGGGTCACAGAAATCTCAAGAGCTTTATTGCTT TCAGTTGGATAAAGAACTTCATGCTCAAGGGTTTCATTTCGGGACATTATTCATATTCCATTGAT GGACGTTTACAAGTACTCTTTCAGTTGAGATTTCTGGGCACCCCGACCCCAATCAATCACTCACC CGGAATCTTATCGTTGTTCTGCATGGACACCTTGTGAATGGTGGCATAATACCGCTCCCGCTGGG CAGCCTCGGAATTGGCTCGATTCTCGAGTGATTCCTTTTGAATTT Found at i:7149845 original size:12 final size:12 Alignment explanation
Indices: 7149818--7149846 Score: 35 Period size: 11 Copynumber: 2.5 Consensus size: 12 7149808 GCTTCATTTT 7149818 GTTTTTGTCGTA 1 GTTTTTGTCGTA 7149830 -TTTTTG-CGCTA 1 GTTTTTGTCG-TA 7149841 GTTTTT 1 GTTTTT 7149847 TTTCGACTTT Statistics Matches: 15, Mismatches: 0, Indels: 4 0.79 0.00 0.21 Matches are distributed among these distances: 10 2 0.13 11 8 0.53 12 5 0.33 ACGTcount: A:0.07, C:0.10, G:0.21, T:0.62 Consensus pattern (12 bp): GTTTTTGTCGTA Left flanking sequence: Indices 7149318 -- 7149817 TATGTGCATCTGTATGTTTTGAGTGCATGCCATGGGTGTGTGAATACAACGTACCATAAATATTC AAGCGCGCCGCATGCTGCACTCGTCCAGCCCGATTCTCCGCGATGCAGGCGTACTCGCCACCATC CTCGACCATGACGTGGCTTATGTTAACATGACTAATTACATCGCCATGCACGGTGATGTATTGTC CGATCATAAATCTGAAATGGCAAAAAGGGATGGTTTTGGATGAGAGCACAAAAAACACATTAATA TTTGCTTGGTTGCGATTTTTGCGATGGTTGCACGCGGCGTATGCGCAATGTGCGAATGTTTGCTA GCTTGGTGTTCTACAATTGTTTTCTTGTTTTCGAGCTGCCGCTGCATATTTAAGCGTACCACACA ACCCAACATTCACGCACACACACACACACACACCGCTGCACACTCATCAGCTAGGCACACTTCAA AAATGCAGCCTGACCCAAATCCCTTTTGACTGTAGGCTTCATTTT Right flanking sequence: Indices 7149847 -- 7150346 TTTCGACTTTTTTTTAAACATTAGTTTTTTTTTCTATGCCACATTTAGTCGTAATGAAGGCTGTC AGTCGAGCTGTCGGGGCTTAGCATAGTTTCCATATTGCTGTCAATGTCATGTGCCACGCCCACGA ATGCGAATACGACATCCACTTAATGCCAGGCCGTTACGCCACGACTCGAATAATGATGGGAAAAA AGGATTTCACAAGGCGCTCAAGTTGGCATTAAGTTCTGCGTTTGTTCCATTGTTTGCCACGCTTT CTTATTGGCACAGACGCATTAATTACAGGCAACATTGTTACGCATACGCCATGTGGCACTCGCAC AATCGGCTTTTGCGGCATCTTACAGCGATGTGAATGTATATGTACGATTGTATTAGTGTATGAGT GTATGAGTGTTGGGGATATGCGGGGATTGCGATCTAAGCCAGCACACCACCCGCCGGCTCATTAG TTTGTGGCCCGGCTCGGTGGCAACTTTTCAATTGGCATTACGGCC Found at i:7150776 original size:20 final size:20 Alignment explanation
Indices: 7150748--7150797 Score: 58 Period size: 20 Copynumber: 2.6 Consensus size: 20 7150738 GTCGCACACA * 7150748 TCCGCATCCGCATCCCCATG 1 TCCGCATCCGCATCCACATG * * 7150768 TCCGTATCCTCATCCACAT- 1 TCCGCATCCGCATCCACATG * 7150787 T-CACATCCGCA 1 TCCGCATCCGCA 7150798 CAACGCCGGC Statistics Matches: 24, Mismatches: 6, Indels: 2 0.75 0.19 0.06 Matches are distributed among these distances: 18 7 0.29 19 1 0.04 20 16 0.67 ACGTcount: A:0.20, C:0.46, G:0.10, T:0.24 Consensus pattern (20 bp): TCCGCATCCGCATCCACATG Left flanking sequence: Indices 7150248 -- 7150747 GGGGATATGCGGGGATTGCGATCTAAGCCAGCACACCACCCGCCGGCTCATTAGTTTGTGGCCCG GCTCGGTGGCAACTTTTCAATTGGCATTACGGCCGCAGTTGGAAGTTGGAGCCAGAGTTGTAGTT GTAGTTGGAGTCGGAGAACAATAATGGCGGAGGCAAAGTAATTACAATTTTAATTAACTTTTGCA GCAGCCGCATCCTGTGGCTAGAGGGGATTCAACGACGTGGCTTGGGGCTTATGAATGCATAAGCC AGTCGCGAGAAGCGCTGATTTCCCCAGAAAGTGTGGCCAAGTCAAGCCGAAAAATCTTTATGGAG TGTGCCCAGGCCAAAAAAAAAAGAAACAGTAGTAACTGTAGTTAAATGAAAATGAAGCTGGGTGC AAAAATATACAGTCGCATTCGGAAGGGAGACACTCAGTCGTTGGCTGCAGCACTTGTGAGCGAGC AATGGAAACAATGGCAAGGACCGAGTTGCAACAAAGTCGCACACA Right flanking sequence: Indices 7150798 -- 7151297 CAACGCCGGCTTAAGCGGCATTGCAGAAGTTTAACGGTGTGTGTTTGAGTGTGTGTGCTCGCCAG TGTGTGGAGCGTAAAACGCTTTGCCTGCAACAATATAAACCTAATAGCGTGGCGCGGCTTTTGTG TGCTGTTTTAGCTGATTGCAGTGTGAGTGCCCGGCTCAGTGGGTGGCTTAATTCCAGCCAGCCGA AAAAAGGGGTGGCAGGAATAAGAATTTCACTGGGTGCCACTTGCATCTTGGCCCCTGCCACACTT TCAAGTTGCAGAAGCGAAAAGTTTCGTGGCAAAAGTTTATGAAAAATTATGAATTTCAATTTAGC CTAATCGAGTTTGCACTTGGATTGCAATCAGGTTAGTTTTGCAGGCACAGCTTAAGGTATCATAA AAAGGCGATAGGGTGGACCTTGATCCGATTATATAAACATATAGCCGAAAAAGTAGCATTCAAGC AATAACAATATAAAACGACTGTCCCGCCGGCACACAGAGTTCACT Found at i:7151471 original size:11 final size:11 Alignment explanation
Indices: 7151455--7151510 Score: 59 Period size: 11 Copynumber: 5.0 Consensus size: 11 7151445 GCAGCTCCGC 7151455 AGGAAAAGCTG 1 AGGAAAAGCTG * 7151466 AGG-AAATCTG 1 AGGAAAAGCTG * * 7151476 AGGGGAAAATCTA 1 A--GGAAAAGCTG * 7151489 AGGAAAAGCGG 1 AGGAAAAGCTG 7151500 AGGAAAAGCTG 1 AGGAAAAGCTG 7151511 TGGGAAGACC Statistics Matches: 36, Mismatches: 6, Indels: 6 0.75 0.12 0.12 Matches are distributed among these distances: 10 7 0.19 11 20 0.56 12 2 0.06 13 7 0.19 ACGTcount: A:0.45, C:0.09, G:0.36, T:0.11 Consensus pattern (11 bp): AGGAAAAGCTG Left flanking sequence: Indices 7150955 -- 7151454 TGCCCGGCTCAGTGGGTGGCTTAATTCCAGCCAGCCGAAAAAAGGGGTGGCAGGAATAAGAATTT CACTGGGTGCCACTTGCATCTTGGCCCCTGCCACACTTTCAAGTTGCAGAAGCGAAAAGTTTCGT GGCAAAAGTTTATGAAAAATTATGAATTTCAATTTAGCCTAATCGAGTTTGCACTTGGATTGCAA TCAGGTTAGTTTTGCAGGCACAGCTTAAGGTATCATAAAAAGGCGATAGGGTGGACCTTGATCCG ATTATATAAACATATAGCCGAAAAAGTAGCATTCAAGCAATAACAATATAAAACGACTGTCCCGC CGGCACACAGAGTTCACTTAAGTTCACATGGCTTTGTGTCGCTCAAAAGGCGTTCCTTCTGCAGC TTAAGCGCTTTCTCATTTAGGCAAAAATTACACATATTTCCATAACGCCTGCAGTTGTAGACAAA CGCATCACGCACACACGCCTCCGTCGACGTTCTTAGCAGCTCCGC Right flanking sequence: Indices 7151511 -- 7152010 TGGGAAGACCTGCCTGCTCAACTGCCTTAGCCCGAGTTTCTGGTACCGCCGCAGACAAACTTTTG AGAATGGCGTAAAATGAGCGTTTGAGTGTTGCGTTACCTCGTGCGCGCAATCATTTAATTTCCGC CTCGAGGCGTCTGCCCCCCATCCACCATCCACCATCTACCACCGCACCCCGCCCCCATGCTTTTC CGGCCATTTCCCAGCACTTCCACCGACATGCCTGTTTGCCTGTCTGTCTGCCACTTCAACTTGTT TGTGTGTGTGTGTGTGTGTTTGCGTTTGTGTGTCTGTGTATTAAATAAATACACTTACCAAGTTG ATATACCTTTAAACCGAATAATGTAAACCACTTAAAACTCGGCAATAACAACGCAAACAGCAAGA GAATTTCTTCTGCATTGCGAAGGATGCTGCTGCTTCCTGGCAAATTAGGTTGCCAGCGACGCCAG GATAACGCCAGCGGGTATTATGTGTCAAAATTGTGTTGCTCAGAT Found at i:7153229 original size:12 final size:11 Alignment explanation
Indices: 7153201--7153230 Score: 42 Period size: 12 Copynumber: 2.5 Consensus size: 11 7153191 ACACGGATAC 7153201 ACAGATTCAGT 1 ACAGATTCAGT 7153212 ACCAGATTCAGAT 1 A-CAGATTCAG-T 7153225 ACAGAT 1 ACAGAT 7153231 ACACTTACAG Statistics Matches: 17, Mismatches: 0, Indels: 3 0.85 0.00 0.15 Matches are distributed among these distances: 11 1 0.06 12 14 0.82 13 2 0.12 ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23 Consensus pattern (11 bp): ACAGATTCAGT Left flanking sequence: Indices 7152701 -- 7153200 ATTTTTTAATCAACAAGAAAAGTCAACAGAAGTTTGACTTGCAAATCATTACAGACGTAACTCAA ACAATTAGTGGCAGCTGCCAACGGACTGCAAATGAAGCAGGACTGCCGGAAAAAAAAAAAACGAA ATACAAAACAAAAAGAAGGGTTTTTATTTTCCAGCAGGTAAGGGACTGAGATAAAAGCCAAATGA ATGGCAACTGACAATGTCGCCGACCAAATTGCCAATCAATCGATTCGCTGCTGCATTTTATTTGC TAGCAAACGAATGGAGGCAACCAACTGTTTGTCAAGTCTGGTCTCGATTTGAGCCGATCGCTTCG ATTTTATGCGGCCAATGCAAATGTCAATGTCATTAAAGAGATTCAATTCAGTTGGCAGCGGGCCA GCTAAAAATGCAATTAAATGCGTAAGGTTTTGCTTGGCGAGCGGCCACTTAATTAACAAATAGAA AGGCAAAGTCCGGAACCTTGGACCAGACACAGCAAACACGGATAC Right flanking sequence: Indices 7153231 -- 7153730 ACACTTACAGTCGCCGGAACAGGAGTGAATGAACGCTGGAGCAGACGAGGCCGACCCAAACCACC CAACTTTGTAGGCGCGGCAGCCACTTTCTATATGTGTGTATATGTTTTTCTATATATTCGTGGGG CAATGTTTTTGAAAGGAAAGCGCAGGCAGCAGCAACAAAAAAAAAAAAAAACAAAAAATACAGAA AATGAGAAAAAAAGTTATGGAGGGAAAAAGCAAAAGGCAAACAAACGCACACAACGAGTGCAATA AATGCAACCGCAGCCACAGTCGGGAGCCGCAGTTGAGATAAATTTTTGCTGGGCGCCCGCAGCGC CGCCTCTGCCGTTGCCATTGCCAAGCCCATCACGGAAACCCCACCCCACTGGCAGGCCCCCTTCA AAGCCCCTACTATGCCCCCATTTCGCCCCTTTTCAACAAGTTCAATTACCTTCCGTTTGATGGCA GCGGAAATCCGTCCAGTGTCCATGAAATTTGCGGCGTAGGATTGC Found at i:7158875 original size:12 final size:12 Alignment explanation
Indices: 7158854--7158880 Score: 40 Period size: 12 Copynumber: 2.2 Consensus size: 12 7158844 ATTCCCCCTT * 7158854 TTTCTTTTTTTA 1 TTTCTATTTTTA * 7158866 TTTCTATTTTTT 1 TTTCTATTTTTA 7158878 TTT 1 TTT 7158881 GCTTTTCTGT Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 12 13 1.00 ACGTcount: A:0.07, C:0.07, G:0.00, T:0.85 Consensus pattern (12 bp): TTTCTATTTTTA Left flanking sequence: Indices 7158354 -- 7158853 CCCGGCCATTGTCGCATTCGAAAGTCGGAGTTTTCCTTACATTGGAGAGCTCGTTTTGCGAGCAA ACAGATTTAGCCTTATCCCAAATTAGAATAACACTTTTGGTGTTTAGATCGGGCTGTTCTTCTAC ATGTTCCCAATGGCCCCCAGACCCAAATACATATACTACGAGTATGTATGTATGTCGAGTGGGGT TGGGGGTATATATATATATATATATCTATATATCTGCATGTATATGTATATTTCTCCAAATTGAC ATTTCGTTTCATATTCCACATGAATGCGCCTCGGCTGTCTGTCTGCCACCGAAGCGGGCATCTTT CCCTGCGGCGCTGTGCAAATCCTTGCAACTCGTTCAATCTATCCCAGCATTCGTCCTGCCCGGGA CTTCAGGACACCAGGACTCCCGATCCGTCCGCCCTCGTCCCTAGAAGTCATTGTGTCTGCAATTA GAGTTGTTTTTGTTGGTTTTGTTTTCCCTCCATTTATTCCCCCTT Right flanking sequence: Indices 7158881 -- 7159380 GCTTTTCTGTGTTTTGTTCTTTTTGGCTTTGTACGCTTTTTGTTGTGCCTGGCCAGGCGCTTTTT GTTTTACGCTCGACAGCATGGATTTTTATGTAACTGCTTTCTGGTTTCGCCTCCGTCTGTCTCAT CGCCTCGTTTCGCTTTTCTCCGCTGATTTCATGGCTTTACATTGCTTCTCCAGCGGTAAGGATCA CACGCAAAAAAATTGACTAAAATCGATCTTTAGTTATATCAAAATATTTAGCAAAGAATCATCAC CAAACTATATTTAACACACTAAATGTTTGCAATTAACAAACAAGCTTTCTAATTACTGATTTAAT GCATAAAATTAATATTTGATTCAGTTGAAAATTTATATATTTAAAATCCTATCTAAGAAATTCTG TCAGCAATGATTGACTTAAATCAGAATATGCCTAATTTATTTTCCACTGTGCAATCATGGCTCCT GGACCAGGATGCGGATAAGGACGAGGCCTCTGCCAGGCCATAAAA Found at