TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_X assembled 2004-3-18 md5checksum:d304f6c7f10939bacf40e33958147342 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 22224390 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Warning! 8514 characters in sequence are not A, C, G, or T Found at i: i:11983139 original size:4 final size:4 Alignment explanation
Indices: 11983132--11983144 Score: 26 Period size: 4 Copynumber: 3.2 Consensus size: 4 11983122 TTTTTTTTAA 11983132 AATT AATT AATT A 1 AATT AATT AATT A 11983145 TGGAATTTTG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 9 1.00 ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46 Consensus pattern (4 bp): AATT Left flanking sequence: Indices 11982632 -- 11983131 ACGCACAGTCACCCACATAGACGACCGCTCAAAATGCAAAAGGCAACGGCAACAAAATGCTACAA ATGCGACCAACTTTGCCTGATAATGAAAATCGAGTTCGTTGTCGTGGCGAAAAGTTTTTGCGAAA AACTTTCATCAAAGGTTACAATTTGTGCCAGGCCTTTATTTCGTCTCGCTCGCACCTATGGCCGC GGGGTCAGGGGTCACGGGAGTGGGCACATGCGAATCGAGTGGTGGCGAAAAGGTGAAAGGTAGAA AGGTGGAGAGGGTGGTGGGTGGTTGGAACTGATGCCTGTCATGGACACCTGATTATATAATTACC TTGCGGAGTTGTTGTTTTCGCTGCTCTCGTTGTTTGATGCTTTCAACTTCAGTCTGTTGTTATTT AATTCGTTTCTTCCAATTTTAATTGTTCACTGGGCGAAATGCACTCAGGCATGTGGATTTTAATT TAATTCAAAGTATACGCGGCACTTCAAAGGGTCATTTTTTTTTAA Right flanking sequence: Indices 11983145 -- 11983644 TGGAATTTTGCTATTATAAGCTTTAAGAAAAACTACATTCATTGAGTTTGTCTATTTTTATTTCA TTTAAATGTGGTATTTTAAGGTTCTCCCTCGAATATTTAAACATTTCTTAGTGCATTAAAGACCT GAAATAGACAGCAGCCTGTTTTTTTTTTTTTTTTTTTTTGTTGGACTAGTCCCCCTGGAAAAGAA AGTCCCACCTTTTCTGGCGATCGTTGATCACTCATTGGGACATCCGCTGGAGACTCCTTCTGAAA TGTCCGACAGGCAAAAGGAAAAAACCGGCGACGGAAGGAAGTTAGCAGCCAGTGGAGTGGTGAAT AGTTTGCTATGGAGTATAGTATAGGTGTAGTATGCTATAAGAATAAAAGCGAGGTCAACGGAACT GGCCGTGCTTAAGTGTGTGTGTATATGTATGTGTGTGTGTGTGTGTGGGTGCTTGGGAAAACTGC ATAATAAGAAACCAGGAGCAGGAAAGTGCCAACTCCCCGTGCACA Found at i:11983299 original size:1 final size:1 Alignment explanation
Indices: 11983293--11983313 Score: 42 Period size: 1 Copynumber: 21.0 Consensus size: 1 11983283 CAGCAGCCTG 11983293 TTTTTTTTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTTTTTT 11983314 GTTGGACTAG Statistics Matches: 20, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 20 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 11982793 -- 11983292 GCCTTTATTTCGTCTCGCTCGCACCTATGGCCGCGGGGTCAGGGGTCACGGGAGTGGGCACATGC GAATCGAGTGGTGGCGAAAAGGTGAAAGGTAGAAAGGTGGAGAGGGTGGTGGGTGGTTGGAACTG ATGCCTGTCATGGACACCTGATTATATAATTACCTTGCGGAGTTGTTGTTTTCGCTGCTCTCGTT GTTTGATGCTTTCAACTTCAGTCTGTTGTTATTTAATTCGTTTCTTCCAATTTTAATTGTTCACT GGGCGAAATGCACTCAGGCATGTGGATTTTAATTTAATTCAAAGTATACGCGGCACTTCAAAGGG TCATTTTTTTTTAAAATTAATTAATTATGGAATTTTGCTATTATAAGCTTTAAGAAAAACTACAT TCATTGAGTTTGTCTATTTTTATTTCATTTAAATGTGGTATTTTAAGGTTCTCCCTCGAATATTT AAACATTTCTTAGTGCATTAAAGACCTGAAATAGACAGCAGCCTG Right flanking sequence: Indices 11983314 -- 11983813 GTTGGACTAGTCCCCCTGGAAAAGAAAGTCCCACCTTTTCTGGCGATCGTTGATCACTCATTGGG ACATCCGCTGGAGACTCCTTCTGAAATGTCCGACAGGCAAAAGGAAAAAACCGGCGACGGAAGGA AGTTAGCAGCCAGTGGAGTGGTGAATAGTTTGCTATGGAGTATAGTATAGGTGTAGTATGCTATA AGAATAAAAGCGAGGTCAACGGAACTGGCCGTGCTTAAGTGTGTGTGTATATGTATGTGTGTGTG TGTGTGTGGGTGCTTGGGAAAACTGCATAATAAGAAACCAGGAGCAGGAAAGTGCCAACTCCCCG TGCACATTTCCATGCCACCACCACCAACTGGGAACAGCTGAAAATACCCAGACTCTCGCTGTGTG CCACTTAATTTGCTTTAAAGTCCCACTGAAGAGTTCTCGCCCCGAGTGGCGTTTTCCGAGGGCAG ACTGTACACTTTGCTCGCAACGAAAGTATTTTTGCATTTTCCAAA Found at i:11983492 original size:5 final size:5 Alignment explanation
Indices: 11983482--11983502 Score: 26 Period size: 5 Copynumber: 4.0 Consensus size: 5 11983472 TTTGCTATGG * 11983482 AGTAT AGTAT AGGTGT AGTAT 1 AGTAT AGTAT A-GTAT AGTAT 11983503 GCTATAAGAA Statistics Matches: 13, Mismatches: 2, Indels: 2 0.76 0.12 0.12 Matches are distributed among these distances: 5 9 0.69 6 4 0.31 ACGTcount: A:0.33, C:0.00, G:0.29, T:0.38 Consensus pattern (5 bp): AGTAT Left flanking sequence: Indices 11982982 -- 11983481 CTCGTTGTTTGATGCTTTCAACTTCAGTCTGTTGTTATTTAATTCGTTTCTTCCAATTTTAATTG TTCACTGGGCGAAATGCACTCAGGCATGTGGATTTTAATTTAATTCAAAGTATACGCGGCACTTC AAAGGGTCATTTTTTTTTAAAATTAATTAATTATGGAATTTTGCTATTATAAGCTTTAAGAAAAA CTACATTCATTGAGTTTGTCTATTTTTATTTCATTTAAATGTGGTATTTTAAGGTTCTCCCTCGA ATATTTAAACATTTCTTAGTGCATTAAAGACCTGAAATAGACAGCAGCCTGTTTTTTTTTTTTTT TTTTTTTGTTGGACTAGTCCCCCTGGAAAAGAAAGTCCCACCTTTTCTGGCGATCGTTGATCACT CATTGGGACATCCGCTGGAGACTCCTTCTGAAATGTCCGACAGGCAAAAGGAAAAAACCGGCGAC GGAAGGAAGTTAGCAGCCAGTGGAGTGGTGAATAGTTTGCTATGG Right flanking sequence: Indices 11983503 -- 11984002 GCTATAAGAATAAAAGCGAGGTCAACGGAACTGGCCGTGCTTAAGTGTGTGTGTATATGTATGTG TGTGTGTGTGTGTGGGTGCTTGGGAAAACTGCATAATAAGAAACCAGGAGCAGGAAAGTGCCAAC TCCCCGTGCACATTTCCATGCCACCACCACCAACTGGGAACAGCTGAAAATACCCAGACTCTCGC TGTGTGCCACTTAATTTGCTTTAAAGTCCCACTGAAGAGTTCTCGCCCCGAGTGGCGTTTTCCGA GGGCAGACTGTACACTTTGCTCGCAACGAAAGTATTTTTGCATTTTCCAAAAGGAAAATCCTTTG ATTGGCGGCATCTCCGAGTGATTATTCGTTTCATTTGCTGTCGATATTGGTCTTGGGTATGTGAA TCTTTGTTAAATTTAATATTTTTTACTGATACGGCCAGAAAAATGTATGAAATTAAAAGAAGGAA ACCCTGGGAAACTTAAGCTCCGAAAAAGAATTTAAACCATGATTA Found at i:11983554 original size:2 final size:2 Alignment explanation
Indices: 11983547--11983585 Score: 50 Period size: 2 Copynumber: 19.5 Consensus size: 2 11983537 CCGTGCTTAA * * * * 11983547 GT GT GT GT GT AT AT GT AT GT GT GT GT GT GT GT GT GG GT G 1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT G 11983586 CTTGGGAAAA Statistics Matches: 31, Mismatches: 6, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 2 31 1.00 ACGTcount: A:0.08, C:0.00, G:0.46, T:0.46 Consensus pattern (2 bp): GT Left flanking sequence: Indices 11983047 -- 11983546 TTCACTGGGCGAAATGCACTCAGGCATGTGGATTTTAATTTAATTCAAAGTATACGCGGCACTTC AAAGGGTCATTTTTTTTTAAAATTAATTAATTATGGAATTTTGCTATTATAAGCTTTAAGAAAAA CTACATTCATTGAGTTTGTCTATTTTTATTTCATTTAAATGTGGTATTTTAAGGTTCTCCCTCGA ATATTTAAACATTTCTTAGTGCATTAAAGACCTGAAATAGACAGCAGCCTGTTTTTTTTTTTTTT TTTTTTTGTTGGACTAGTCCCCCTGGAAAAGAAAGTCCCACCTTTTCTGGCGATCGTTGATCACT CATTGGGACATCCGCTGGAGACTCCTTCTGAAATGTCCGACAGGCAAAAGGAAAAAACCGGCGAC GGAAGGAAGTTAGCAGCCAGTGGAGTGGTGAATAGTTTGCTATGGAGTATAGTATAGGTGTAGTA TGCTATAAGAATAAAAGCGAGGTCAACGGAACTGGCCGTGCTTAA Right flanking sequence: Indices 11983586 -- 11984085 CTTGGGAAAACTGCATAATAAGAAACCAGGAGCAGGAAAGTGCCAACTCCCCGTGCACATTTCCA TGCCACCACCACCAACTGGGAACAGCTGAAAATACCCAGACTCTCGCTGTGTGCCACTTAATTTG CTTTAAAGTCCCACTGAAGAGTTCTCGCCCCGAGTGGCGTTTTCCGAGGGCAGACTGTACACTTT GCTCGCAACGAAAGTATTTTTGCATTTTCCAAAAGGAAAATCCTTTGATTGGCGGCATCTCCGAG TGATTATTCGTTTCATTTGCTGTCGATATTGGTCTTGGGTATGTGAATCTTTGTTAAATTTAATA TTTTTTACTGATACGGCCAGAAAAATGTATGAAATTAAAAGAAGGAAACCCTGGGAAACTTAAGC TCCGAAAAAGAATTTAAACCATGATTATTGATTGTTGATTCTTTTAGAATTAATATGTAGTCGTT AAATTGGTTGTCGCCTACCTAAAATAAAGAATTTCAACCAGATAT Found at i:11984578 original size:6 final size:6 Alignment explanation
Indices: 11984567--11984581 Score: 30 Period size: 6 Copynumber: 2.5 Consensus size: 6 11984557 GCACTTATTC 11984567 AATCAA AATCAA AAT 1 AATCAA AATCAA AAT 11984582 AAATAAACAT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.67, C:0.13, G:0.00, T:0.20 Consensus pattern (6 bp): AATCAA Left flanking sequence: Indices 11984067 -- 11984566 AAGAATTTCAACCAGATATTTCGAATGCTTCACCTGTTAAATCTGTTGCCATTGATTGATGGCCT TGAGTCCTGTTCGGATTGTGTCCTGTTTCTGTTCGCCGTTGCCAATCTTCTATTTTTGTCCTGTC CACTGCACTTGTCTCCCTATTTGTTTGCCTTGTCACCGAGTCATGAAAACGATCGGAAAAAAAGC CAAAAATTTAAATATTTTATAAGACCTAAAATCGAAGAAGAAAATGAAAGAACAAACCAAATCCA TATATATAAACTGGTACGAAAATTTCCGTACGAATTTGTTTCTCCTTGTTGCCAAACCATCTTCT TCTCAGTTTTCTCTTCTTTTTTTTTTCATTTCTTTTGGCTTTTGGCTGAAATGGCGCGTAAATAT GCCAAAGGAATCGTCGTCCTTAAGGGCGGGATCAACAACACAGCTATATAAAAATAGATGTAAAT CGGGCTGGTGCGACTGAATGATGGGGCTTGCCTTAGCACTTATTC Right flanking sequence: Indices 11984582 -- 11985081 AAATAAACATGCGGAGCACCACTCCTGTCTCGTTTTCTATAAATATTCCTCACTGTGCGGTCTTC GGGGAACTTTGTCGATTGTCAAATTGTCATTGTTGTGCATTAAACGAAAATTGCGCATACGCCGC GTGTGCCAGCGTACGTATGTATGTACATATGTATTGTACATACACCTGCCTGCCTTTTATACAAC GACTCACGTTGCTTTTATTTTTGCTGCCTCGATTGGTGAGCAAACAGCGGGATAAACTGTAAGTC CTACATATATACACACACATACATATATGTATATATATATATATATTTTATATATATAGTATAAA ATGCAACTCGGCCAAATTGAGTTGAATCTCCATTGATTTTCTGCTCGTCGTCTTTGCAATCCCCG AGTGCAGGGCAATAAAATAGTTCCAATTTATGCGTGACTATCTTGTGTGTTTAAGGATTGCAGAA AGTTGGCTAAATTGAGGCAAATATTGTGGCACCAGGCCTCAAATA Found at i:11984733 original size:4 final size:4 Alignment explanation
Indices: 11984722--11984745 Score: 27 Period size: 4 Copynumber: 6.0 Consensus size: 4 11984712 GTGTGCCAGC * * * 11984722 GTAC GTAT GTAT GTAC ATAT GTAT 1 GTAT GTAT GTAT GTAT GTAT GTAT 11984746 TGTACATACA Statistics Matches: 15, Mismatches: 5, Indels: 0 0.75 0.25 0.00 Matches are distributed among these distances: 4 15 1.00 ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42 Consensus pattern (4 bp): GTAT Left flanking sequence: Indices 11984222 -- 11984721 TGCCTTGTCACCGAGTCATGAAAACGATCGGAAAAAAAGCCAAAAATTTAAATATTTTATAAGAC CTAAAATCGAAGAAGAAAATGAAAGAACAAACCAAATCCATATATATAAACTGGTACGAAAATTT CCGTACGAATTTGTTTCTCCTTGTTGCCAAACCATCTTCTTCTCAGTTTTCTCTTCTTTTTTTTT TCATTTCTTTTGGCTTTTGGCTGAAATGGCGCGTAAATATGCCAAAGGAATCGTCGTCCTTAAGG GCGGGATCAACAACACAGCTATATAAAAATAGATGTAAATCGGGCTGGTGCGACTGAATGATGGG GCTTGCCTTAGCACTTATTCAATCAAAATCAAAATAAATAAACATGCGGAGCACCACTCCTGTCT CGTTTTCTATAAATATTCCTCACTGTGCGGTCTTCGGGGAACTTTGTCGATTGTCAAATTGTCAT TGTTGTGCATTAAACGAAAATTGCGCATACGCCGCGTGTGCCAGC Right flanking sequence: Indices 11984746 -- 11985245 TGTACATACACCTGCCTGCCTTTTATACAACGACTCACGTTGCTTTTATTTTTGCTGCCTCGATT GGTGAGCAAACAGCGGGATAAACTGTAAGTCCTACATATATACACACACATACATATATGTATAT ATATATATATATTTTATATATATAGTATAAAATGCAACTCGGCCAAATTGAGTTGAATCTCCATT GATTTTCTGCTCGTCGTCTTTGCAATCCCCGAGTGCAGGGCAATAAAATAGTTCCAATTTATGCG TGACTATCTTGTGTGTTTAAGGATTGCAGAAAGTTGGCTAAATTGAGGCAAATATTGTGGCACCA GGCCTCAAATAATATTAGTGGCAAGATGTCTTTATTTTCTTAGCATTTCCTTCTCCTAGATTTGA TTCGATTAGTCGGTTCGTGACCAGTTTTCCCTTTTTATGTTAGCCCTCTGTATTTGATTTGCTCT CCGGCGGTTAGAAGTTTATTCGGTTCGGACATTTAATGAAATTGT Found at i:11984869 original size:2 final size:2 Alignment explanation
Indices: 11984860--11984904 Score: 53 Period size: 2 Copynumber: 22.5 Consensus size: 2 11984850 ATACACACAC * * * 11984860 AT AC AT AT AT GT AT AT AT AT AT AT AT AT -T TT AT AT AT AT AGT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T 11984902 AT A 1 AT A 11984905 AAATGCAACT Statistics Matches: 36, Mismatches: 5, Indels: 4 0.80 0.11 0.09 Matches are distributed among these distances: 1 1 0.03 2 33 0.92 3 2 0.06 ACGTcount: A:0.44, C:0.02, G:0.04, T:0.49 Consensus pattern (2 bp): AT Left flanking sequence: Indices 11984360 -- 11984859 ATTTGTTTCTCCTTGTTGCCAAACCATCTTCTTCTCAGTTTTCTCTTCTTTTTTTTTTCATTTCT TTTGGCTTTTGGCTGAAATGGCGCGTAAATATGCCAAAGGAATCGTCGTCCTTAAGGGCGGGATC AACAACACAGCTATATAAAAATAGATGTAAATCGGGCTGGTGCGACTGAATGATGGGGCTTGCCT TAGCACTTATTCAATCAAAATCAAAATAAATAAACATGCGGAGCACCACTCCTGTCTCGTTTTCT ATAAATATTCCTCACTGTGCGGTCTTCGGGGAACTTTGTCGATTGTCAAATTGTCATTGTTGTGC ATTAAACGAAAATTGCGCATACGCCGCGTGTGCCAGCGTACGTATGTATGTACATATGTATTGTA CATACACCTGCCTGCCTTTTATACAACGACTCACGTTGCTTTTATTTTTGCTGCCTCGATTGGTG AGCAAACAGCGGGATAAACTGTAAGTCCTACATATATACACACAC Right flanking sequence: Indices 11984905 -- 11985404 AAATGCAACTCGGCCAAATTGAGTTGAATCTCCATTGATTTTCTGCTCGTCGTCTTTGCAATCCC CGAGTGCAGGGCAATAAAATAGTTCCAATTTATGCGTGACTATCTTGTGTGTTTAAGGATTGCAG AAAGTTGGCTAAATTGAGGCAAATATTGTGGCACCAGGCCTCAAATAATATTAGTGGCAAGATGT CTTTATTTTCTTAGCATTTCCTTCTCCTAGATTTGATTCGATTAGTCGGTTCGTGACCAGTTTTC CCTTTTTATGTTAGCCCTCTGTATTTGATTTGCTCTCCGGCGGTTAGAAGTTTATTCGGTTCGGA CATTTAATGAAATTGTGTGTTACTTCTTGTTTGACGGCCCTTGAATTTTACGTGCTTCATTTTAC TATTTTTTTTTTGTTTGTACTTGTATACAAAACTATCCGATTTTTAAACTACCTTTTTGCATCTG AAATAAAACTGTTTACGATTCCTGTGTCATGCAATCGCTTTAGCT Found at i:11985468 original size:6 final size:6 Alignment explanation
Indices: 11985457--11985470 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 11985447 AATTTCAAAG 11985457 TTGTTT TTGTTT TT 1 TTGTTT TTGTTT TT 11985471 TCTACCATTG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86 Consensus pattern (6 bp): TTGTTT Left flanking sequence: Indices 11984957 -- 11985456 TCTTTGCAATCCCCGAGTGCAGGGCAATAAAATAGTTCCAATTTATGCGTGACTATCTTGTGTGT TTAAGGATTGCAGAAAGTTGGCTAAATTGAGGCAAATATTGTGGCACCAGGCCTCAAATAATATT AGTGGCAAGATGTCTTTATTTTCTTAGCATTTCCTTCTCCTAGATTTGATTCGATTAGTCGGTTC GTGACCAGTTTTCCCTTTTTATGTTAGCCCTCTGTATTTGATTTGCTCTCCGGCGGTTAGAAGTT TATTCGGTTCGGACATTTAATGAAATTGTGTGTTACTTCTTGTTTGACGGCCCTTGAATTTTACG TGCTTCATTTTACTATTTTTTTTTTGTTTGTACTTGTATACAAAACTATCCGATTTTTAAACTAC CTTTTTGCATCTGAAATAAAACTGTTTACGATTCCTGTGTCATGCAATCGCTTTAGCTCTTCTTT ATCAACATTTTTGATTATTCTGACAGGGTATTCGAAATTTCAAAG Right flanking sequence: Indices 11985471 -- 11985970 TCTACCATTGTTGACTTCACCATATTTTGCCACATATTCGTTTTAACACTGAGAAATTATCGTAT TATTAATGTTAATAATAATTATTAAAGAATATGCTAAAAACGTTTATTTGCACATTGCATATATT TTCTTTTTATTTTTGAAGCTATTAACTGGCAGCTTTTCAAATTTGATTGGCCATAATGATTGGCA GATTCTCCACAAAATTTTTTTGCACAGTGCCCCTCCCTGCTCGCGTCCTTTTTCGCCGTTTCGCA CACAACTCACGCAGTCGAGTGTCCTTGCCTGTTATTGTTATGGCCGTTATGGCCATACCGTCCAC CTCCGCCCAGTTCATCAATCATACGCAACGTTGGCACGTGCACCAGAGCGTTAACAGTGCAGGGA TAGGATGGGATTGGTAGCTCTTTGTCTACCCGTTGGCTATCGTGGACTAAGGGCCAAAGGCCAAG GGCCAAGGGTGCCACGATGCCTGGATGGCAACATTCTTTCTGATA Found at i:11985613 original size:6 final size:6 Alignment explanation
Indices: 11985599--11985614 Score: 25 Period size: 6 Copynumber: 2.7 Consensus size: 6 11985589 ATTGCATATA * 11985599 TTTTCT TTTTAT TTTT 1 TTTTAT TTTTAT TTTT 11985615 GAAGCTATTA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.06, C:0.06, G:0.00, T:0.88 Consensus pattern (6 bp): TTTTAT Left flanking sequence: Indices 11985099 -- 11985598 TCTTTATTTTCTTAGCATTTCCTTCTCCTAGATTTGATTCGATTAGTCGGTTCGTGACCAGTTTT CCCTTTTTATGTTAGCCCTCTGTATTTGATTTGCTCTCCGGCGGTTAGAAGTTTATTCGGTTCGG ACATTTAATGAAATTGTGTGTTACTTCTTGTTTGACGGCCCTTGAATTTTACGTGCTTCATTTTA CTATTTTTTTTTTGTTTGTACTTGTATACAAAACTATCCGATTTTTAAACTACCTTTTTGCATCT GAAATAAAACTGTTTACGATTCCTGTGTCATGCAATCGCTTTAGCTCTTCTTTATCAACATTTTT GATTATTCTGACAGGGTATTCGAAATTTCAAAGTTGTTTTTGTTTTTTCTACCATTGTTGACTTC ACCATATTTTGCCACATATTCGTTTTAACACTGAGAAATTATCGTATTATTAATGTTAATAATAA TTATTAAAGAATATGCTAAAAACGTTTATTTGCACATTGCATATA Right flanking sequence: Indices 11985615 -- 11986114 GAAGCTATTAACTGGCAGCTTTTCAAATTTGATTGGCCATAATGATTGGCAGATTCTCCACAAAA TTTTTTTGCACAGTGCCCCTCCCTGCTCGCGTCCTTTTTCGCCGTTTCGCACACAACTCACGCAG TCGAGTGTCCTTGCCTGTTATTGTTATGGCCGTTATGGCCATACCGTCCACCTCCGCCCAGTTCA TCAATCATACGCAACGTTGGCACGTGCACCAGAGCGTTAACAGTGCAGGGATAGGATGGGATTGG TAGCTCTTTGTCTACCCGTTGGCTATCGTGGACTAAGGGCCAAAGGCCAAGGGCCAAGGGTGCCA CGATGCCTGGATGGCAACATTCTTTCTGATAAGCCAAAGTGTCATAACGTCGCCCTAATGAAGCG TCTCAGTTTTGCCGTTGTGTCCATAAGCTGGATGTGACTGCAATCGCCAACAATTACAAAAGTTG CAAGTTGCCCCAGCTAAATCCATTTCAGCCTTCTTCTCTACTTTC i:11986186 original size:5 final size:5 Alignment explanation
Indices: 11986170--11986188 Score: 31 Period size: 5 Copynumber: 3.8 Consensus size: 5 11986160 GAACAAGTAT * 11986170 CTGAG CGGAG CTGAG CTGA 1 CTGAG CTGAG CTGAG CTGA 11986189 ACTTCAGGCG Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 5 12 1.00 ACGTcount: A:0.21, C:0.21, G:0.42, T:0.16 Consensus pattern (5 bp): CTGAG Left flanking sequence: Indices 11985670 -- 11986169 CTCCACAAAATTTTTTTGCACAGTGCCCCTCCCTGCTCGCGTCCTTTTTCGCCGTTTCGCACACA ACTCACGCAGTCGAGTGTCCTTGCCTGTTATTGTTATGGCCGTTATGGCCATACCGTCCACCTCC GCCCAGTTCATCAATCATACGCAACGTTGGCACGTGCACCAGAGCGTTAACAGTGCAGGGATAGG ATGGGATTGGTAGCTCTTTGTCTACCCGTTGGCTATCGTGGACTAAGGGCCAAAGGCCAAGGGCC AAGGGTGCCACGATGCCTGGATGGCAACATTCTTTCTGATAAGCCAAAGTGTCATAACGTCGCCC TAATGAAGCGTCTCAGTTTTGCCGTTGTGTCCATAAGCTGGATGTGACTGCAATCGCCAACAATT ACAAAAGTTGCAAGTTGCCCCAGCTAAATCCATTTCAGCCTTCTTCTCTACTTTCGTTTTGCTAA AGTTGGTTGGATTAAAAGCAGGACGAGAACGATACGAACAAGTAT Right flanking sequence: Indices 11986189 -- 11986688 ACTTCAGGCGGTGTTCATAAACTTGAACAAAAAATTGTTTCGCTCGGCGAGAAATTTTGCGGGCA AACCGGGCGGACTGGGAGGTATATATATAAAAAACAAAAAACAAAAAAGAAAAAAGTTTTATCTA ACCGAAGAAAGTGGGCGTGACTGCGTGGCCTGTCGCATTCTGTTTAAAGTTAATATTTACATGCC ACGAAGTAGCAACAAATTCTTGTCATTTGCAGCTGCGAGACAAGACAAGGACGAACGGCAGGATA TGGCACATCAAAAGGGGATCCTGTCGAGGTACACGCAGAAAAAATAAATAAATACTGCATAGCAG AGATGATAAAAACAGCCAATTATAAATTAAATTCCTAAACAAAATGTAAACAAATATAAAGAAAT TACAGCTTAATTCTGTTTTTAAGAAATTATACACTGTTTAAAAATATTTTTATTAACACATTTGA ATGAATTAAGCTGAATAGTGAAATCTCAAACAATCTGATACAGAA Found at i:11986293 original size:1 final size:1 Alignment explanation
Indices: 11986282--11986308 Score: 33 Period size: 1 Copynumber: 27.0 Consensus size: 1 11986272 GTATATATAT * * * 11986282 AAAAAACAAAAAACAAAAAAGAAAAAA 1 AAAAAAAAAAAAAAAAAAAAAAAAAAA 11986309 GTTTTATCTA Statistics Matches: 20, Mismatches: 6, Indels: 0 0.77 0.23 0.00 Matches are distributed among these distances: 1 20 1.00 ACGTcount: A:0.89, C:0.07, G:0.04, T:0.00 Consensus pattern (1 bp): A Left flanking sequence: Indices 11985782 -- 11986281 GCCATACCGTCCACCTCCGCCCAGTTCATCAATCATACGCAACGTTGGCACGTGCACCAGAGCGT TAACAGTGCAGGGATAGGATGGGATTGGTAGCTCTTTGTCTACCCGTTGGCTATCGTGGACTAAG GGCCAAAGGCCAAGGGCCAAGGGTGCCACGATGCCTGGATGGCAACATTCTTTCTGATAAGCCAA AGTGTCATAACGTCGCCCTAATGAAGCGTCTCAGTTTTGCCGTTGTGTCCATAAGCTGGATGTGA CTGCAATCGCCAACAATTACAAAAGTTGCAAGTTGCCCCAGCTAAATCCATTTCAGCCTTCTTCT CTACTTTCGTTTTGCTAAAGTTGGTTGGATTAAAAGCAGGACGAGAACGATACGAACAAGTATCT GAGCGGAGCTGAGCTGAACTTCAGGCGGTGTTCATAAACTTGAACAAAAAATTGTTTCGCTCGGC GAGAAATTTTGCGGGCAAACCGGGCGGACTGGGAGGTATATATAT Right flanking sequence: Indices 11986309 -- 11986808 GTTTTATCTAACCGAAGAAAGTGGGCGTGACTGCGTGGCCTGTCGCATTCTGTTTAAAGTTAATA TTTACATGCCACGAAGTAGCAACAAATTCTTGTCATTTGCAGCTGCGAGACAAGACAAGGACGAA CGGCAGGATATGGCACATCAAAAGGGGATCCTGTCGAGGTACACGCAGAAAAAATAAATAAATAC TGCATAGCAGAGATGATAAAAACAGCCAATTATAAATTAAATTCCTAAACAAAATGTAAACAAAT ATAAAGAAATTACAGCTTAATTCTGTTTTTAAGAAATTATACACTGTTTAAAAATATTTTTATTA ACACATTTGAATGAATTAAGCTGAATAGTGAAATCTCAAACAATCTGATACAGAAGCACAATTGT TTCCATCTAATCCTTGCAAGCAAATTATTTTCAAACTTCTGTCATTCGTAGTACGATTTTCCCAA CTTTATCCGAGTGTTGAGCAAGACAAACGAACATCAAGTTTTGTT Found at i:11986499 original size:4 final size:4 Alignment explanation
Indices: 11986490--11986502 Score: 26 Period size: 4 Copynumber: 3.2 Consensus size: 4 11986480 CACGCAGAAA 11986490 AAAT AAAT AAAT A 1 AAAT AAAT AAAT A 11986503 CTGCATAGCA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 9 1.00 ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23 Consensus pattern (4 bp): AAAT Left flanking sequence: Indices 11985990 -- 11986489 CGCCCTAATGAAGCGTCTCAGTTTTGCCGTTGTGTCCATAAGCTGGATGTGACTGCAATCGCCAA CAATTACAAAAGTTGCAAGTTGCCCCAGCTAAATCCATTTCAGCCTTCTTCTCTACTTTCGTTTT GCTAAAGTTGGTTGGATTAAAAGCAGGACGAGAACGATACGAACAAGTATCTGAGCGGAGCTGAG CTGAACTTCAGGCGGTGTTCATAAACTTGAACAAAAAATTGTTTCGCTCGGCGAGAAATTTTGCG GGCAAACCGGGCGGACTGGGAGGTATATATATAAAAAACAAAAAACAAAAAAGAAAAAAGTTTTA TCTAACCGAAGAAAGTGGGCGTGACTGCGTGGCCTGTCGCATTCTGTTTAAAGTTAATATTTACA TGCCACGAAGTAGCAACAAATTCTTGTCATTTGCAGCTGCGAGACAAGACAAGGACGAACGGCAG GATATGGCACATCAAAAGGGGATCCTGTCGAGGTACACGCAGAAA Right flanking sequence: Indices 11986503 -- 11987002 CTGCATAGCAGAGATGATAAAAACAGCCAATTATAAATTAAATTCCTAAACAAAATGTAAACAAA TATAAAGAAATTACAGCTTAATTCTGTTTTTAAGAAATTATACACTGTTTAAAAATATTTTTATT AACACATTTGAATGAATTAAGCTGAATAGTGAAATCTCAAACAATCTGATACAGAAGCACAATTG TTTCCATCTAATCCTTGCAAGCAAATTATTTTCAAACTTCTGTCATTCGTAGTACGATTTTCCCA ACTTTATCCGAGTGTTGAGCAAGACAAACGAACATCAAGTTTTGTTTTGGGTCGCCGGGCAAATG ACAACTTGAAGTTCATAAAAGCGCAACTAATGTGCATGAAATACGTTTTGATATAGACGCGCACA CAATGTCGTCCACTCGCTAAGCCAACGTGGCAGCCCCATCCTTTTTTTTTTTTTTTTGGCCAAAA CTTGCCAGCCATTTTGGCCAGGACAACACCCTCGTCTTGGAATTT Found at i:11986940 original size:1 final size:1 Alignment explanation
Indices: 11986934--11986949 Score: 32 Period size: 1 Copynumber: 16.0 Consensus size: 1 11986924 AGCCCCATCC 11986934 TTTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTT 11986950 GGCCAAAACT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 15 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 11986434 -- 11986933 ACGAACGGCAGGATATGGCACATCAAAAGGGGATCCTGTCGAGGTACACGCAGAAAAAATAAATA AATACTGCATAGCAGAGATGATAAAAACAGCCAATTATAAATTAAATTCCTAAACAAAATGTAAA CAAATATAAAGAAATTACAGCTTAATTCTGTTTTTAAGAAATTATACACTGTTTAAAAATATTTT TATTAACACATTTGAATGAATTAAGCTGAATAGTGAAATCTCAAACAATCTGATACAGAAGCACA ATTGTTTCCATCTAATCCTTGCAAGCAAATTATTTTCAAACTTCTGTCATTCGTAGTACGATTTT CCCAACTTTATCCGAGTGTTGAGCAAGACAAACGAACATCAAGTTTTGTTTTGGGTCGCCGGGCA AATGACAACTTGAAGTTCATAAAAGCGCAACTAATGTGCATGAAATACGTTTTGATATAGACGCG CACACAATGTCGTCCACTCGCTAAGCCAACGTGGCAGCCCCATCC Right flanking sequence: Indices 11986950 -- 11987449 GGCCAAAACTTGCCAGCCATTTTGGCCAGGACAACACCCTCGTCTTGGAATTTTATTTGCCACCT TTCTGGGCCATACGTTTCCCTTTCATATTTCGTAAACAAAACATCAACGTGGAACTTTTCTCTGC CTTTTTTACTTCGTTCTTTTTTTTTTTTTTTTTTTGGAACTTTACTGCGATAACTTGCAATAAGG GAAAGAACTTTGGAGAAATCAGAGAGGGAACGAAATATACAAGAAAAGAACTTTTCACATTGACA TGTTTGGAGCTAGCCCCGCAATTTTCCCCCGACTTTTACCCGACTTTTCGTCTCGATCCCGGTTT GTCGACAATTTGCGCACCCTTCGACCATTTTGCTTGCCATATTTTAGCCATTTATCTGAGCTTTT CCCCCCCCCCCCCCCCAGCTTCGATTCCTCGGTCTCGATGTAATGCATTTTGACGTTAGCTGGCT CAAAGTTTCTTGTTTATATTCGCTTATTGTTTATAAATGGTTGAT Found at i:11987100 original size:1 final size:1 Alignment explanation
Indices: 11987096--11987114 Score: 38 Period size: 1 Copynumber: 19.0 Consensus size: 1 11987086 TACTTCGTTC 11987096 TTTTTTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTTTT 11987115 GGAACTTTAC Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 18 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 11986596 -- 11987095 TTTAAGAAATTATACACTGTTTAAAAATATTTTTATTAACACATTTGAATGAATTAAGCTGAATA GTGAAATCTCAAACAATCTGATACAGAAGCACAATTGTTTCCATCTAATCCTTGCAAGCAAATTA TTTTCAAACTTCTGTCATTCGTAGTACGATTTTCCCAACTTTATCCGAGTGTTGAGCAAGACAAA CGAACATCAAGTTTTGTTTTGGGTCGCCGGGCAAATGACAACTTGAAGTTCATAAAAGCGCAACT AATGTGCATGAAATACGTTTTGATATAGACGCGCACACAATGTCGTCCACTCGCTAAGCCAACGT GGCAGCCCCATCCTTTTTTTTTTTTTTTTGGCCAAAACTTGCCAGCCATTTTGGCCAGGACAACA CCCTCGTCTTGGAATTTTATTTGCCACCTTTCTGGGCCATACGTTTCCCTTTCATATTTCGTAAA CAAAACATCAACGTGGAACTTTTCTCTGCCTTTTTTACTTCGTTC Right flanking sequence: Indices 11987115 -- 11987614 GGAACTTTACTGCGATAACTTGCAATAAGGGAAAGAACTTTGGAGAAATCAGAGAGGGAACGAAA TATACAAGAAAAGAACTTTTCACATTGACATGTTTGGAGCTAGCCCCGCAATTTTCCCCCGACTT TTACCCGACTTTTCGTCTCGATCCCGGTTTGTCGACAATTTGCGCACCCTTCGACCATTTTGCTT GCCATATTTTAGCCATTTATCTGAGCTTTTCCCCCCCCCCCCCCCCAGCTTCGATTCCTCGGTCT CGATGTAATGCATTTTGACGTTAGCTGGCTCAAAGTTTCTTGTTTATATTCGCTTATTGTTTATA AATGGTTGATAAGTGACGGCGCCCCTTCACACCAGCCCTCGTCCTTTTGGGCTCCTTTCGTTTCT CCTTCGAGTGCTATTCGAGTTCGTCCCTGATTTTCCTTGATTTTCATTCCCCCCCCCCCCCTCAC CCCGCTCACAGTTTTCCTCGAAGTTTCCCGCAGAGCTCGTTTTTT Found at i:11987346 original size:1 final size:1 Alignment explanation
Indices: 11987340--11987355 Score: 32 Period size: 1 Copynumber: 16.0 Consensus size: 1 11987330 CTGAGCTTTT 11987340 CCCCCCCCCCCCCCCC 1 CCCCCCCCCCCCCCCC 11987356 AGCTTCGATT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 15 1.00 ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00 Consensus pattern (1 bp): C Left flanking sequence: Indices 11986840 -- 11987339 TCATAAAAGCGCAACTAATGTGCATGAAATACGTTTTGATATAGACGCGCACACAATGTCGTCCA CTCGCTAAGCCAACGTGGCAGCCCCATCCTTTTTTTTTTTTTTTTGGCCAAAACTTGCCAGCCAT TTTGGCCAGGACAACACCCTCGTCTTGGAATTTTATTTGCCACCTTTCTGGGCCATACGTTTCCC TTTCATATTTCGTAAACAAAACATCAACGTGGAACTTTTCTCTGCCTTTTTTACTTCGTTCTTTT TTTTTTTTTTTTTTTGGAACTTTACTGCGATAACTTGCAATAAGGGAAAGAACTTTGGAGAAATC AGAGAGGGAACGAAATATACAAGAAAAGAACTTTTCACATTGACATGTTTGGAGCTAGCCCCGCA ATTTTCCCCCGACTTTTACCCGACTTTTCGTCTCGATCCCGGTTTGTCGACAATTTGCGCACCCT TCGACCATTTTGCTTGCCATATTTTAGCCATTTATCTGAGCTTTT Right flanking sequence: Indices 11987356 -- 11987855 AGCTTCGATTCCTCGGTCTCGATGTAATGCATTTTGACGTTAGCTGGCTCAAAGTTTCTTGTTTA TATTCGCTTATTGTTTATAAATGGTTGATAAGTGACGGCGCCCCTTCACACCAGCCCTCGTCCTT TTGGGCTCCTTTCGTTTCTCCTTCGAGTGCTATTCGAGTTCGTCCCTGATTTTCCTTGATTTTCA TTCCCCCCCCCCCCCTCACCCCGCTCACAGTTTTCCTCGAAGTTTCCCGCAGAGCTCGTTTTTTG CTGAAGAGCTGTGCAAAGTCTGGCCGATTGAGCAGTGTTAGCCAATGCAATATTGTTTTGACATT TGGCTTCCTGTTAGCTCTATTTAACTTGTATTGAGCCACCATTGCGGCTACGTTATGGCTTCAAG TCGACTGACTTTGATTGGGCCACCTAAGCCACTGTGAAGATGAAAACCTCAATTGGATGGAAGGG TTGTTTTGCACTGTTAATAATATATGTGTTATTTTGTATGCAATC Found at i:11987559 original size:1 final size:1 Alignment explanation
Indices: 11987553--11987565 Score: 26 Period size: 1 Copynumber: 13.0 Consensus size: 1 11987543 GATTTTCATT 11987553 CCCCCCCCCCCCC 1 CCCCCCCCCCCCC 11987566 TCACCCCGCT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 12 1.00 ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00 Consensus pattern (1 bp): C Left flanking sequence: Indices 11987053 -- 11987552 AAACATCAACGTGGAACTTTTCTCTGCCTTTTTTACTTCGTTCTTTTTTTTTTTTTTTTTTTGGA ACTTTACTGCGATAACTTGCAATAAGGGAAAGAACTTTGGAGAAATCAGAGAGGGAACGAAATAT ACAAGAAAAGAACTTTTCACATTGACATGTTTGGAGCTAGCCCCGCAATTTTCCCCCGACTTTTA CCCGACTTTTCGTCTCGATCCCGGTTTGTCGACAATTTGCGCACCCTTCGACCATTTTGCTTGCC ATATTTTAGCCATTTATCTGAGCTTTTCCCCCCCCCCCCCCCCAGCTTCGATTCCTCGGTCTCGA TGTAATGCATTTTGACGTTAGCTGGCTCAAAGTTTCTTGTTTATATTCGCTTATTGTTTATAAAT GGTTGATAAGTGACGGCGCCCCTTCACACCAGCCCTCGTCCTTTTGGGCTCCTTTCGTTTCTCCT TCGAGTGCTATTCGAGTTCGTCCCTGATTTTCCTTGATTTTCATT Right flanking sequence: Indices 11987566 -- 11988065 TCACCCCGCTCACAGTTTTCCTCGAAGTTTCCCGCAGAGCTCGTTTTTTGCTGAAGAGCTGTGCA AAGTCTGGCCGATTGAGCAGTGTTAGCCAATGCAATATTGTTTTGACATTTGGCTTCCTGTTAGC TCTATTTAACTTGTATTGAGCCACCATTGCGGCTACGTTATGGCTTCAAGTCGACTGACTTTGAT TGGGCCACCTAAGCCACTGTGAAGATGAAAACCTCAATTGGATGGAAGGGTTGTTTTGCACTGTT AATAATATATGTGTTATTTTGTATGCAATCGTGATTTATTTTAATTTATGCAACACAACCCCTAG TAGGATTAATTGTAAATAATATTTTAGTGAAAACTGCGAAACAATGATTATAGATTAAATATCAC TAATTGAAGAAATAAATAGTAGAAATATAGCATTTCAAAAATCCTTTAAATTGGAAAGAGCATAG TTTTCATGAAATGATTTTTGCTTGTAAACATAGTTCTATTATTTG Found at i:11989511 original size:2 final size:2 Alignment explanation
Indices: 11989504--11989523 Score: 33 Period size: 2 Copynumber: 10.0 Consensus size: 2 11989494 AAATATCAAA * 11989504 AT AT AT AT AT GT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT 11989524 CAGCGTACAA Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 2 16 1.00 ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50 Consensus pattern (2 bp): AT Left flanking sequence: Indices 11989004 -- 11989503 ACCACAAAAGTTGTTTGTACCCCACCCCTATCTAAATATTCCCGAAAATCTTTCGCTCGGGTGCC AAAAGTTTGTTTACTTGGGCTGGGGCCAAGCGAGAAAAAAAAAAAACAATGTGAAAGGGTGTCAG AGAAAGTAGGTTGCGAGTTATCAAAGCTAATCGGTGACTTAATCTAAAAAATGTAGTCACAAGCC CTTGATCTACTTATATTGGCAGCAAATGAAGTTCGGCTGAGAAAAACTACGAAAAAAAAAGTAGG TAAGCTCAGAAAAAGAGAACGAAAAATGCAATGAATCAAAAATTACATCTATGAATTGTTAATAA TTAAAAATTAAAGTACACCTTCAAGACTATAACAGAATATTCGATAAAACTGAAGCGAGAAATTC ACGAAATAAACCGCAGCAACAAAAGTTTGAAATAAATGCATTGAATGGGCCAAGTCCCCAATGTA ATCAGCGAAAATGCGAAACGACTGGCAGCTGGTCAAAATATCAAA Right flanking sequence: Indices 11989524 -- 11990023 CAGCGTACAAATTCGCGTTATGTTTCCCGGCATTTATCTATTTTATTCCCAAACCATATCGTGAG TGTTCGTGTGTTTTCTGTTGCAAAAGATAAAATTATACGCATCGGGGTCACGTGTAAAGGTCGTA AATTCGAAATGTACGGACACATTGAAAGAAAGCCAAATCTCTGTGGAGGCTGGGGGGTCGAAATG ATAAGCGGTACTCGTGTGGGCGGGCTAATTATGACAGCCCATTTGCATTTGGACTGTTAATCACG ATTATGCATAATTAATCCCAATTATGCACAAACACAAATTAATAGACAAAATATGCACATTGCAG CTGTCGCATCAATTAAGCCGGTAGCCTGTAGCGCGTAACTCGTCCCGCTTATCCACAGTGCGTAT GATTGATAATGCCGCCCTCCTCGGCGCTTCTCATGCCACACAGCTAATGGCTAACCGAAAGTGTC ATGCTCCACTAACTGATAACCCTATTTCATGTTTAAAGACCCGCA Found at i:11990129 original size:2 final size:2 Alignment explanation
Indices: 11990122--11990147 Score: 43 Period size: 2 Copynumber: 12.5 Consensus size: 2 11990112 ACACATGCAA 11990122 GT GT GT GT GT GT AGT GT GT GT GT GT G 1 GT GT GT GT GT GT -GT GT GT GT GT GT G 11990148 CAGGACGTGT Statistics Matches: 23, Mismatches: 0, Indels: 2 0.92 0.00 0.08 Matches are distributed among these distances: 2 21 0.91 3 2 0.09 ACGTcount: A:0.04, C:0.00, G:0.50, T:0.46 Consensus pattern (2 bp): GT Left flanking sequence: Indices 11989622 -- 11990121 TATACGCATCGGGGTCACGTGTAAAGGTCGTAAATTCGAAATGTACGGACACATTGAAAGAAAGC CAAATCTCTGTGGAGGCTGGGGGGTCGAAATGATAAGCGGTACTCGTGTGGGCGGGCTAATTATG ACAGCCCATTTGCATTTGGACTGTTAATCACGATTATGCATAATTAATCCCAATTATGCACAAAC ACAAATTAATAGACAAAATATGCACATTGCAGCTGTCGCATCAATTAAGCCGGTAGCCTGTAGCG CGTAACTCGTCCCGCTTATCCACAGTGCGTATGATTGATAATGCCGCCCTCCTCGGCGCTTCTCA TGCCACACAGCTAATGGCTAACCGAAAGTGTCATGCTCCACTAACTGATAACCCTATTTCATGTT TAAAGACCCGCAACGACGATGAAGGAGCAGCAATAAATGGAGTTATCGTAAAATATGAAACAAGT CCCAAACAAATCCTCGAACAATGGCCAACAGATAGACACATGCAA Right flanking sequence: Indices 11990148 -- 11990647 CAGGACGTGTTCAAGCAAAAAGGATTCAACGCTCTACTTGCAATTTCCGTTTGTCCGTTTTTCCT CTGCTCGCTGTCCGTTTCTCGTTTTAGACGGGATATATATACAATACAACAAACCAAGAGACAAA CATACGGACACACAGACACTGGGGATAGAGCAGGACACAAACGATATAAATATAAAATAAATCTT TGTTTAAATACCCGAAGAATGTTGGCAAATATTTTTGAAACCGCACACATGGACACAGACATTCA TGGGCTATGGCTCTTAAGGGTCGTCCCCTTCGTCCTGGAAATAAAAGGCATACCCATAAATAATA TTCAGCATCAAATCCGCTTTAAACAGAGAAGCCGGCCAACTTTTCCCACAGTCGCAGGTTTGGGG TTCATATATATTTTGTTTTTTTTTTTTTATATTTCTCGCTTTGTTTTCGGCAAAGGGGCTTCTCC CACTCGATAAGCATCGACGAACGACTTGTTGGTTCGTTTGGCTAA Found at i:11990332 original size:6 final size:6 Alignment explanation
Indices: 11990321--11990339 Score: 31 Period size: 6 Copynumber: 3.3 Consensus size: 6 11990311 GACACAAACG 11990321 ATATAA ATATAA A-ATAA AT 1 ATATAA ATATAA ATATAA AT 11990340 CTTTGTTTAA Statistics Matches: 12, Mismatches: 0, Indels: 2 0.86 0.00 0.14 Matches are distributed among these distances: 5 5 0.42 6 7 0.58 ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32 Consensus pattern (6 bp): ATATAA Left flanking sequence: Indices 11989821 -- 11990320 ATTAATAGACAAAATATGCACATTGCAGCTGTCGCATCAATTAAGCCGGTAGCCTGTAGCGCGTA ACTCGTCCCGCTTATCCACAGTGCGTATGATTGATAATGCCGCCCTCCTCGGCGCTTCTCATGCC ACACAGCTAATGGCTAACCGAAAGTGTCATGCTCCACTAACTGATAACCCTATTTCATGTTTAAA GACCCGCAACGACGATGAAGGAGCAGCAATAAATGGAGTTATCGTAAAATATGAAACAAGTCCCA AACAAATCCTCGAACAATGGCCAACAGATAGACACATGCAAGTGTGTGTGTGTAGTGTGTGTGTG TGCAGGACGTGTTCAAGCAAAAAGGATTCAACGCTCTACTTGCAATTTCCGTTTGTCCGTTTTTC CTCTGCTCGCTGTCCGTTTCTCGTTTTAGACGGGATATATATACAATACAACAAACCAAGAGACA AACATACGGACACACAGACACTGGGGATAGAGCAGGACACAAACG Right flanking sequence: Indices 11990340 -- 11990839 CTTTGTTTAAATACCCGAAGAATGTTGGCAAATATTTTTGAAACCGCACACATGGACACAGACAT TCATGGGCTATGGCTCTTAAGGGTCGTCCCCTTCGTCCTGGAAATAAAAGGCATACCCATAAATA ATATTCAGCATCAAATCCGCTTTAAACAGAGAAGCCGGCCAACTTTTCCCACAGTCGCAGGTTTG GGGTTCATATATATTTTGTTTTTTTTTTTTTATATTTCTCGCTTTGTTTTCGGCAAAGGGGCTTC TCCCACTCGATAAGCATCGACGAACGACTTGTTGGTTCGTTTGGCTAAAGGAAAAATAAAAAAAA TGATGGTAGGGCAAAAAGGGAAAAGCCGGACAATGACCCTCGCTAATTTGCGGGATTTTCCTTTC ACAATAAATGAATTTTTGGAATGGGTTAGTGTTAAGAAGAAACTTCACTTCCGAAGGTTGGCCAA GTGTAATTTTAAAGGCCAAATGTTGACAAAAAGCGGATTAATCGT Found at i:11990559 original size:1 final size:1 Alignment explanation
Indices: 11990548--11990565 Score: 29 Period size: 1 Copynumber: 18.0 Consensus size: 1 11990538 TTCATATATA * 11990548 TTTTGTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTTT 11990566 ATATTTCTCG Statistics Matches: 15, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 1 15 1.00 ACGTcount: A:0.00, C:0.00, G:0.06, T:0.94 Consensus pattern (1 bp): T Left flanking sequence: Indices 11990048 -- 11990547 ATGGAGTTATCGTAAAATATGAAACAAGTCCCAAACAAATCCTCGAACAATGGCCAACAGATAGA CACATGCAAGTGTGTGTGTGTAGTGTGTGTGTGTGCAGGACGTGTTCAAGCAAAAAGGATTCAAC GCTCTACTTGCAATTTCCGTTTGTCCGTTTTTCCTCTGCTCGCTGTCCGTTTCTCGTTTTAGACG GGATATATATACAATACAACAAACCAAGAGACAAACATACGGACACACAGACACTGGGGATAGAG CAGGACACAAACGATATAAATATAAAATAAATCTTTGTTTAAATACCCGAAGAATGTTGGCAAAT ATTTTTGAAACCGCACACATGGACACAGACATTCATGGGCTATGGCTCTTAAGGGTCGTCCCCTT CGTCCTGGAAATAAAAGGCATACCCATAAATAATATTCAGCATCAAATCCGCTTTAAACAGAGAA GCCGGCCAACTTTTCCCACAGTCGCAGGTTTGGGGTTCATATATA Right flanking sequence: Indices 11990566 -- 11991065 ATATTTCTCGCTTTGTTTTCGGCAAAGGGGCTTCTCCCACTCGATAAGCATCGACGAACGACTTG TTGGTTCGTTTGGCTAAAGGAAAAATAAAAAAAATGATGGTAGGGCAAAAAGGGAAAAGCCGGAC AATGACCCTCGCTAATTTGCGGGATTTTCCTTTCACAATAAATGAATTTTTGGAATGGGTTAGTG TTAAGAAGAAACTTCACTTCCGAAGGTTGGCCAAGTGTAATTTTAAAGGCCAAATGTTGACAAAA AGCGGATTAATCGTTGGATATTAATCGCTTTGAACGGGAAAAGGTAAAGGTTATTCAGAAAACTT TTTAGATGAAAAATGTGATCTTAAAGTAATTAAAAGATTTGTTTATTGATTGTATTTGTTAATTA AATGGATTGGAAACTTTAGCTCTATGCCAAATTTAAAGATGCCTACAAGTTGATTCAGTATATAT ATTCCATTATATTTCATTATATATTCAAGTTAAGATTCCAAGAAA Found at i:11991262 original size:6 final size:6 Alignment explanation
Indices: 11991251--11991269 Score: 31 Period size: 6 Copynumber: 3.2 Consensus size: 6 11991241 AGGGACGATC * 11991251 CGAATG CGAATG CAAATG C 1 CGAATG CGAATG CGAATG C 11991270 AGCTGCCTTA Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 6 12 1.00 ACGTcount: A:0.37, C:0.21, G:0.26, T:0.16 Consensus pattern (6 bp): CGAATG Left flanking sequence: Indices 11990751 -- 11991250 TGGGTTAGTGTTAAGAAGAAACTTCACTTCCGAAGGTTGGCCAAGTGTAATTTTAAAGGCCAAAT GTTGACAAAAAGCGGATTAATCGTTGGATATTAATCGCTTTGAACGGGAAAAGGTAAAGGTTATT CAGAAAACTTTTTAGATGAAAAATGTGATCTTAAAGTAATTAAAAGATTTGTTTATTGATTGTAT TTGTTAATTAAATGGATTGGAAACTTTAGCTCTATGCCAAATTTAAAGATGCCTACAAGTTGATT CAGTATATATATTCCATTATATTTCATTATATATTCAAGTTAAGATTCCAAGAAATTGTTATGTG CTGCGACATTTCCCTAAATAGGAAACTATTAAATATTTGAGGTCGTTTTCAACTTACAAGGACTC TGATTTAGTTGTGTATCCTATTACTATTGGACCGAAGCCCAGCTAAAAATAGTCTTGGCCAAAGT CATGTGCAATATCCATTGGGGTAAAGCCCCCTAAAAGGGACGATC Right flanking sequence: Indices 11991270 -- 11991769 AGCTGCCTTAGCAAACAACTAAAACAATGCCAGATTTTTGCAAACTTAAATCCGTGTTTATGTCT CCACAATGCCGCCCACTTAGTCCACCCAGAAAATTCCCCAAACATCATTTCATATATCGTGCACA TGGAAAAAACACTTTTTACTTCCAGTAAATTATGAAATTTTAATTAAAATTTTTTTTTTGTATGG CTTACACAAATAAGCTTATGTTATTTGTACTATTTTATTGATCAAAATCATATATACAAGTAAGT AGCTAACTAAATATTCATCATAAATGTTTTAAAAATTGATGAATGAATGCTAGTGATGATTATTC ACACTTGGTGTGAATTAAAGATTAAATACTATTATTTTTTCAGTTTTGTATGAAGTATTTGGCGC AGTGCATGTGTGTGTGCGAGGGCGTTACTGTCTGTCTATAGAAATGCTTGAATGTATGTGTATGA GCGAGCGCGTTACGCCCTAATAACCTACAAAATAGTTGGCAAACC Found at i:11992258 original size:6 final size:6 Alignment explanation
Indices: 11992247--11992265 Score: 29 Period size: 6 Copynumber: 3.0 Consensus size: 6 11992237 CTGATCATCT 11992247 AATTTA AATTTAA AATTTA 1 AATTTA AATTT-A AATTTA 11992266 TTCCTTCGCA Statistics Matches: 12, Mismatches: 0, Indels: 2 0.86 0.00 0.14 Matches are distributed among these distances: 6 6 0.50 7 6 0.50 ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47 Consensus pattern (6 bp): AATTTA Left flanking sequence: Indices 11991747 -- 11992246 ACCTACAAAATAGTTGGCAAACCCACCCACTTTTGGCCAACATGACTTGAACTATGCAAAAAAAA ACAAGAAAACGAGGAGGAAAAACTAGAAAATAAAAGGAAAAACTAGAAAAAAAGAGGCAAAATGG CAGAATGAAAGCGCAAAGCAATGACAGCGCCAGATGCGAAAAAGTAGAAATGGCCCAGACTAAAG AGGAACAAACATTTGCCGCCTTTACTTATCCAAAACGAAGCGAAAGCAAAGGCTTTTGGCCAGAA GCTAAAGTTGGCCTGAACAAAGTGAATATGAAAGGAGCTGAATGCAAATAGTGTGCTATCGATAT GCCAACCAAGAACGAAGTCCATCCTAACTTCCCCTTCAAAAAAGAAAAGCATTTTTCAGCTGGAT TTCATTTGAATTTATCGCACAAGTTGGCAAGCAACTTCATATTTTTTTTTAGATACTTGCCAACT TTAAATTTAATGTAATAAGTTTTTTGGTTTCTTCCCTGATCATCT Right flanking sequence: Indices 11992266 -- 11992765 TTCCTTCGCAGATCATAGTTTCATAGTTTCTCATTTATTAACTTATTTAATTCTTTTAATTATAT TAATATTTTTCGGTACCACTTGAAACTTGTTCACATCTAGTAAATTTAATTTAGAAATTTAGGGC CATAATGAAAGTTTTAATTTTATTTTCGCTCGCCCATGGAATATAGCATTTGACTACCGATTGAT TTTATTTCTTTTCCATTTATATTTATCTTGTGAATTGTGCTCGTACAGTTGGTTTTTAGTTTTAT TTTGCATATAGATGACTGCGCTCGATACTCTCGTTGCAATCGATACGAATTCAATTCATTTCGCG GCCCCAAATGCATTTGAAATATTTGCCACATACGCGTTCGCACACAAAACTTCGAATCAGACCGA CTCAAAATCCAAAACAGATAACTTATTTTCCAGCCAGTGAAAAAAGGCCAGCAAAAAAAAAAATA TATATAGGAAAACAGGCGAAAAAGGTTGAAAATAGGTTGAAAAAA Found at i:11992781 original size:6 final size:6 Alignment explanation
Indices: 11992767--11992782 Score: 25 Period size: 6 Copynumber: 2.7 Consensus size: 6 11992757 TTGAAAAAAT * 11992767 GAAATC GAAAGC GAAA 1 GAAAGC GAAAGC GAAA 11992783 CACGCTTTCC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.56, C:0.12, G:0.25, T:0.06 Consensus pattern (6 bp): GAAAGC Left flanking sequence: Indices 11992267 -- 11992766 TCCTTCGCAGATCATAGTTTCATAGTTTCTCATTTATTAACTTATTTAATTCTTTTAATTATATT AATATTTTTCGGTACCACTTGAAACTTGTTCACATCTAGTAAATTTAATTTAGAAATTTAGGGCC ATAATGAAAGTTTTAATTTTATTTTCGCTCGCCCATGGAATATAGCATTTGACTACCGATTGATT TTATTTCTTTTCCATTTATATTTATCTTGTGAATTGTGCTCGTACAGTTGGTTTTTAGTTTTATT TTGCATATAGATGACTGCGCTCGATACTCTCGTTGCAATCGATACGAATTCAATTCATTTCGCGG CCCCAAATGCATTTGAAATATTTGCCACATACGCGTTCGCACACAAAACTTCGAATCAGACCGAC TCAAAATCCAAAACAGATAACTTATTTTCCAGCCAGTGAAAAAAGGCCAGCAAAAAAAAAAATAT ATATAGGAAAACAGGCGAAAAAGGTTGAAAATAGGTTGAAAAAAT Right flanking sequence: Indices 11992783 -- 11993282 CACGCTTTCCGCAGAGGGTAATTGAAATTTCTGCCAGTCAAATTGGCGCTGTCAAGTGTCAAAAA ATGCAATTTGCACTGCGAATGAAGTGTGGCTCAAAGGACCGAGGGCTTATCCATCTGTCTATCTA TCTAACCAAAAATATATATCAAACATATCTAAGTCGCTCTTCGGCTGTATCAATATCGCAATGTG TATAAATCATAAAGTAATTCTGGCTAAGAGAACGAAAACAAAAAAAAAAAAAGAAAATAAAATGG AATGTTTGTGCTGTGAAAGCTTTACGACACTTGGCCATGGGAAATTATGTCAAATTCAAGCTCAG CCAACCGAAACAGCCAACAACAAGGACCGCCACCTCTCTCGGTCGACATTGGTTGAAGAAGAAGA AGAAGAGCCACAAGCACTCCAAGAAGGACCTCAAGTCGAACGTGAAGAAGAAGAAGAACTAGGCG AGAAAGAAGCAAAAGTAGAAGCAGAAGCCGGCAGGACGAAGTGCA Found at i:11992914 original size:4 final size:4 Alignment explanation
Indices: 11992895--11992916 Score: 30 Period size: 4 Copynumber: 5.5 Consensus size: 4 11992885 ACCGAGGGCT * * 11992895 TATC CATC TGTC TATC TATC TA 1 TATC TATC TATC TATC TATC TA 11992917 ACCAAAAATA Statistics Matches: 14, Mismatches: 4, Indels: 0 0.78 0.22 0.00 Matches are distributed among these distances: 4 14 1.00 ACGTcount: A:0.23, C:0.27, G:0.05, T:0.45 Consensus pattern (4 bp): TATC Left flanking sequence: Indices 11992395 -- 11992894 CCATAATGAAAGTTTTAATTTTATTTTCGCTCGCCCATGGAATATAGCATTTGACTACCGATTGA TTTTATTTCTTTTCCATTTATATTTATCTTGTGAATTGTGCTCGTACAGTTGGTTTTTAGTTTTA TTTTGCATATAGATGACTGCGCTCGATACTCTCGTTGCAATCGATACGAATTCAATTCATTTCGC GGCCCCAAATGCATTTGAAATATTTGCCACATACGCGTTCGCACACAAAACTTCGAATCAGACCG ACTCAAAATCCAAAACAGATAACTTATTTTCCAGCCAGTGAAAAAAGGCCAGCAAAAAAAAAAAT ATATATAGGAAAACAGGCGAAAAAGGTTGAAAATAGGTTGAAAAAATGAAATCGAAAGCGAAACA CGCTTTCCGCAGAGGGTAATTGAAATTTCTGCCAGTCAAATTGGCGCTGTCAAGTGTCAAAAAAT GCAATTTGCACTGCGAATGAAGTGTGGCTCAAAGGACCGAGGGCT Right flanking sequence: Indices 11992917 -- 11993416 ACCAAAAATATATATCAAACATATCTAAGTCGCTCTTCGGCTGTATCAATATCGCAATGTGTATA AATCATAAAGTAATTCTGGCTAAGAGAACGAAAACAAAAAAAAAAAAAGAAAATAAAATGGAATG TTTGTGCTGTGAAAGCTTTACGACACTTGGCCATGGGAAATTATGTCAAATTCAAGCTCAGCCAA CCGAAACAGCCAACAACAAGGACCGCCACCTCTCTCGGTCGACATTGGTTGAAGAAGAAGAAGAA GAGCCACAAGCACTCCAAGAAGGACCTCAAGTCGAACGTGAAGAAGAAGAAGAACTAGGCGAGAA AGAAGCAAAAGTAGAAGCAGAAGCCGGCAGGACGAAGTGCAAGTAAAGGAGTCAAGGAGCCAAGA GTTCCAGGCCAAGTCGGAACGTGCAAATGAAATTTATTGTTATGACTGCAGTTTAAGCCTGACAG AGACGGAAGGTTTCGAAAGGGACAGCGAAATCGAGGGGGGGGGGG Found at i:11993023 original size:1 final size:1 Alignment explanation
Indices: 11993012--11993039 Score: 35 Period size: 1 Copynumber: 28.0 Consensus size: 1 11993002 TAAGAGAACG * * * 11993012 AAAACAAAAAAAAAAAAAGAAAATAAAA 1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA 11993040 TGGAATGTTT Statistics Matches: 21, Mismatches: 6, Indels: 0 0.78 0.22 0.00 Matches are distributed among these distances: 1 21 1.00 ACGTcount: A:0.89, C:0.04, G:0.04, T:0.04 Consensus pattern (1 bp): A Left flanking sequence: Indices 11992512 -- 11993011 GTTTTTAGTTTTATTTTGCATATAGATGACTGCGCTCGATACTCTCGTTGCAATCGATACGAATT CAATTCATTTCGCGGCCCCAAATGCATTTGAAATATTTGCCACATACGCGTTCGCACACAAAACT TCGAATCAGACCGACTCAAAATCCAAAACAGATAACTTATTTTCCAGCCAGTGAAAAAAGGCCAG CAAAAAAAAAAATATATATAGGAAAACAGGCGAAAAAGGTTGAAAATAGGTTGAAAAAATGAAAT CGAAAGCGAAACACGCTTTCCGCAGAGGGTAATTGAAATTTCTGCCAGTCAAATTGGCGCTGTCA AGTGTCAAAAAATGCAATTTGCACTGCGAATGAAGTGTGGCTCAAAGGACCGAGGGCTTATCCAT CTGTCTATCTATCTAACCAAAAATATATATCAAACATATCTAAGTCGCTCTTCGGCTGTATCAAT ATCGCAATGTGTATAAATCATAAAGTAATTCTGGCTAAGAGAACG Right flanking sequence: Indices 11993040 -- 11993539 TGGAATGTTTGTGCTGTGAAAGCTTTACGACACTTGGCCATGGGAAATTATGTCAAATTCAAGCT CAGCCAACCGAAACAGCCAACAACAAGGACCGCCACCTCTCTCGGTCGACATTGGTTGAAGAAGA AGAAGAAGAGCCACAAGCACTCCAAGAAGGACCTCAAGTCGAACGTGAAGAAGAAGAAGAACTAG GCGAGAAAGAAGCAAAAGTAGAAGCAGAAGCCGGCAGGACGAAGTGCAAGTAAAGGAGTCAAGGA GCCAAGAGTTCCAGGCCAAGTCGGAACGTGCAAATGAAATTTATTGTTATGACTGCAGTTTAAGC CTGACAGAGACGGAAGGTTTCGAAAGGGACAGCGAAATCGAGGGGGGGGGGGGGGATGGGGGGCA GATGGGGAGTCGGGCTGACATGGGGACACTCGCATGAGCAAGGATTAAATTGCTCAAGTTAATAT TTCTGTTGCCAGCCAGGATCAACTGGGTCAAGCTGGGTAATCCAG Found at