TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_2L assembled 2004-4-6 md5checksum:29037f68a520aa000acffb8837e59820 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 22407834 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Warning! 100 characters in sequence are not A, C, G, or T Found at i: i:9605190 original size:1 final size:1 Alignment explanation
Indices: 9605166--9605178 Score: 26 Period size: 1 Copynumber: 13.0 Consensus size: 1 9605156 ATCATTTTAT 9605166 AAAAAAAAAAAAA 1 AAAAAAAAAAAAA 9605179 TAATTGCAAA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 12 1.00 ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00 Consensus pattern (1 bp): A Left flanking sequence: Indices 9604666 -- 9605165 TTCACTTTGTGGCGTCTCCGATCCCCGTTTGCCGATCTCCGAACCTCAATCCCGTCCAGCTGCTC TTGAGGCAGGTCAAGTCGTGCGTGCCGCTGTCGTCTGGTTTTTTGGTCTGGGATCGGGAATCTGG GATCTAGACGGGCTGGGATGACTTGATTACAGCCACATGCGGGATGTTGGTCAGAGATTTTTCAC TTCGCAATTGTAGGCCATCTGCTGCTTCTACGTTGTAGGTTGCTAAACGAAATCGAAATCAGCAA TCCAGTTAAGCTGCCTTGGCCATCTAGCCAGAATCATCATCACCCAGTTAGTCTGAGCTTATCTT ATCGCGTTATCAGAGACACAGAAGCACTGGCTTTTAATTAATACGCTTTATATAAGAAGTTTGGT CAAGACGAAAGAAAGGGCAGAAAGCCGGTCTTAAGAATATCTGATAATTTTCTTTACAAAAGAAG CCGATTAACAAAGATAGTATGTTTACTATTTATGAATCATTTTAT Right flanking sequence: Indices 9605179 -- 9605678 TAATTGCAAAAATCTAATCTATGACACATTTTTGTATCTTTTCAGGCATTTATCGTTTATACAAG GCTTAAATTTTACTATTACAATTGAATTATTCAAGATACATTTTATAAGGATTCATTTATAAATC AATAATATCAACACACATTTTTTGGAACAGAAGAAACGCCAAGGGGCCCGAGGCATCTAACTGCA TATGGAAACACCCCAATTGTGTATCCACGAATTCCATCTTCGATTTCCCATTATGAGGGTCGAGT TCCTTGACATAGCACTACGGTACTGTATGTTCCGTTCCCCAATCAAGCTGCTCATGAGCAAAGCA CATTAGGCCCGGAATGGGATCCCGCCCCAAGCTCATTATGCAAACAATAAGTTGGAGGGAGTTGG TTGACGACGATGTCGGGAGCCAAGTGCGCCGGGTTGATTACGCCCCGAATTTGCCGAATTTTCAA CAGTCCATTTAGCTGATTAAAGTGTAGGACAGCGCAACTGCGGCA Found at i:9606320 original size:6 final size:6 Alignment explanation
Indices: 9606309--9606321 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 9606299 ATTGCCTTCG 9606309 GTCTTT GTCTTT G 1 GTCTTT GTCTTT G 9606322 CTGGGTGCCA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.15, G:0.23, T:0.62 Consensus pattern (6 bp): GTCTTT Left flanking sequence: Indices 9605809 -- 9606308 TACTCGCTACTTTTGATATCTCCTCTTTTTTTTTTTGCCCGAACCATGGCTTTTTGTGGCTTTTT GATTGTTCTGTTAGGCGAAAGAAGTCATAAAATTAAATTTATGGGTCATAATTTTACGATCAAAA GTAATTCGCCCGAGAAGATGGTCTGTCTTGGGGCCATCGAAGCAATCCACCCTTGTAATTGGGTT CTAATCGAGCTCACTTATGAGACCACGACTCCTCCAAGAGGGCCATTAGTATTGGCCTAACACGT CGAGGGCTCCGCAGACATTTGTCAAAATTTACGAGAAACTTTAAAAATCAATTCCTCTTGTTCAC GTTATTGTTGTTGTGCTGGTTGTTTTGTGGGTGATGTGAGTGGATATCAATCAGTCAATAGGCAA AACATTAATCCGATGAGCTTTGCTCTAGGCTCTGGGTCTCTGACTTCGTCTATTAGCGGACCTCC CAGCGTGACGGCCAATTAATTGCGTAAATGGAAAAATTGCCTTCG Right flanking sequence: Indices 9606322 -- 9606821 CTGGGTGCCACAAAGTCACACTTCACTGTGGTCCGAGATTCGGCTACAGTCGAAGAAACAATTTG GTCGAATGTGTCAACAATCAAGTATCTGTGCAGTCCGCCATAGGGGTCATCAATATCGACGGATG TGTAGAAGATTTTTCTTAATTAGGATAGCGCCTCACTAAAGCTTTTCCCGAAGCTGTTACCTATA TAACATATTTCAGAAAATATAGGTAAAACATAAACATATACATATAAACATATACAACTTCAAGC ATTTTTCTTGGTGCAGTACACCAAATTAATTATTATTATTTTTGGGTCGAAAGCTTGAAAACCCA TTACACCAGTTTTTATTTATTTTAACAGATCGATGATTAATTTGATGCGCCAAAAATGAAATTAT GGAAATATTTTGGAACACAATGGCTTAGATGCCCCAATGACAGGCCCTTCTTGGAACAGCTGGAG CTTGGCGCTCTCGGAGCACGCGCTCATTAGAGATCGGTCCGATCA Found at i:9606553 original size:6 final size:6 Alignment explanation
Indices: 9606542--9606560 Score: 31 Period size: 6 Copynumber: 3.2 Consensus size: 6 9606532 AATATAGGTA * 9606542 AAACAT AAACAT ATACAT A 1 AAACAT AAACAT AAACAT A 9606561 TAAACATATA Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 6 12 1.00 ACGTcount: A:0.63, C:0.16, G:0.00, T:0.21 Consensus pattern (6 bp): AAACAT Left flanking sequence: Indices 9606042 -- 9606541 AGGGCCATTAGTATTGGCCTAACACGTCGAGGGCTCCGCAGACATTTGTCAAAATTTACGAGAAA CTTTAAAAATCAATTCCTCTTGTTCACGTTATTGTTGTTGTGCTGGTTGTTTTGTGGGTGATGTG AGTGGATATCAATCAGTCAATAGGCAAAACATTAATCCGATGAGCTTTGCTCTAGGCTCTGGGTC TCTGACTTCGTCTATTAGCGGACCTCCCAGCGTGACGGCCAATTAATTGCGTAAATGGAAAAATT GCCTTCGGTCTTTGTCTTTGCTGGGTGCCACAAAGTCACACTTCACTGTGGTCCGAGATTCGGCT ACAGTCGAAGAAACAATTTGGTCGAATGTGTCAACAATCAAGTATCTGTGCAGTCCGCCATAGGG GTCATCAATATCGACGGATGTGTAGAAGATTTTTCTTAATTAGGATAGCGCCTCACTAAAGCTTT TCCCGAAGCTGTTACCTATATAACATATTTCAGAAAATATAGGTA Right flanking sequence: Indices 9606561 -- 9607060 TAAACATATACAACTTCAAGCATTTTTCTTGGTGCAGTACACCAAATTAATTATTATTATTTTTG GGTCGAAAGCTTGAAAACCCATTACACCAGTTTTTATTTATTTTAACAGATCGATGATTAATTTG ATGCGCCAAAAATGAAATTATGGAAATATTTTGGAACACAATGGCTTAGATGCCCCAATGACAGG CCCTTCTTGGAACAGCTGGAGCTTGGCGCTCTCGGAGCACGCGCTCATTAGAGATCGGTCCGATC ACAGCGTGACTCTGGATCTATGACTTCGAGGTGGGACCACAGCGGGTGTGTGTGTGTGTGCCTAC ATTAAACTATCCATGCTTATAAAATAATGTTAAGCAATTAATTGCGAAAACCCCAAGCAGCTGCA AGACAGAAAACCGAACGATAAGCCGGATCGCGATAGATACTGGGGTAAACTGTTTAGCTAGTTGT GAAGTTGTGCATTTTCTACCACTTTCTGGTTGGTTCGTATATATG Found at i:9606561 original size:6 final size:6 Alignment explanation
Indices: 9606544--9606572 Score: 33 Period size: 6 Copynumber: 4.5 Consensus size: 6 9606534 TATAGGTAAA * 9606544 ACATAA ACATAT ACATAT AAACATAT ACA 1 ACATAT ACATAT ACATAT --ACATAT ACA 9606573 ACTTCAAGCA Statistics Matches: 20, Mismatches: 1, Indels: 4 0.80 0.04 0.16 Matches are distributed among these distances: 6 14 0.70 8 6 0.30 ACGTcount: A:0.59, C:0.17, G:0.00, T:0.24 Consensus pattern (6 bp): ACATAT Left flanking sequence: Indices 9606044 -- 9606543 GGCCATTAGTATTGGCCTAACACGTCGAGGGCTCCGCAGACATTTGTCAAAATTTACGAGAAACT TTAAAAATCAATTCCTCTTGTTCACGTTATTGTTGTTGTGCTGGTTGTTTTGTGGGTGATGTGAG TGGATATCAATCAGTCAATAGGCAAAACATTAATCCGATGAGCTTTGCTCTAGGCTCTGGGTCTC TGACTTCGTCTATTAGCGGACCTCCCAGCGTGACGGCCAATTAATTGCGTAAATGGAAAAATTGC CTTCGGTCTTTGTCTTTGCTGGGTGCCACAAAGTCACACTTCACTGTGGTCCGAGATTCGGCTAC AGTCGAAGAAACAATTTGGTCGAATGTGTCAACAATCAAGTATCTGTGCAGTCCGCCATAGGGGT CATCAATATCGACGGATGTGTAGAAGATTTTTCTTAATTAGGATAGCGCCTCACTAAAGCTTTTC CCGAAGCTGTTACCTATATAACATATTTCAGAAAATATAGGTAAA Right flanking sequence: Indices 9606573 -- 9607072 ACTTCAAGCATTTTTCTTGGTGCAGTACACCAAATTAATTATTATTATTTTTGGGTCGAAAGCTT GAAAACCCATTACACCAGTTTTTATTTATTTTAACAGATCGATGATTAATTTGATGCGCCAAAAA TGAAATTATGGAAATATTTTGGAACACAATGGCTTAGATGCCCCAATGACAGGCCCTTCTTGGAA CAGCTGGAGCTTGGCGCTCTCGGAGCACGCGCTCATTAGAGATCGGTCCGATCACAGCGTGACTC TGGATCTATGACTTCGAGGTGGGACCACAGCGGGTGTGTGTGTGTGTGCCTACATTAAACTATCC ATGCTTATAAAATAATGTTAAGCAATTAATTGCGAAAACCCCAAGCAGCTGCAAGACAGAAAACC GAACGATAAGCCGGATCGCGATAGATACTGGGGTAAACTGTTTAGCTAGTTGTGAAGTTGTGCAT TTTCTACCACTTTCTGGTTGGTTCGTATATATGGTAAATGTATTT Found at i:9606873 original size:2 final size:2 Alignment explanation
Indices: 9606866--9606880 Score: 30 Period size: 2 Copynumber: 7.5 Consensus size: 2 9606856 ACCACAGCGG 9606866 GT GT GT GT GT GT GT G 1 GT GT GT GT GT GT GT G 9606881 CCTACATTAA Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 13 1.00 ACGTcount: A:0.00, C:0.00, G:0.53, T:0.47 Consensus pattern (2 bp): GT Left flanking sequence: Indices 9606366 -- 9606865 TACAGTCGAAGAAACAATTTGGTCGAATGTGTCAACAATCAAGTATCTGTGCAGTCCGCCATAGG GGTCATCAATATCGACGGATGTGTAGAAGATTTTTCTTAATTAGGATAGCGCCTCACTAAAGCTT TTCCCGAAGCTGTTACCTATATAACATATTTCAGAAAATATAGGTAAAACATAAACATATACATA TAAACATATACAACTTCAAGCATTTTTCTTGGTGCAGTACACCAAATTAATTATTATTATTTTTG GGTCGAAAGCTTGAAAACCCATTACACCAGTTTTTATTTATTTTAACAGATCGATGATTAATTTG ATGCGCCAAAAATGAAATTATGGAAATATTTTGGAACACAATGGCTTAGATGCCCCAATGACAGG CCCTTCTTGGAACAGCTGGAGCTTGGCGCTCTCGGAGCACGCGCTCATTAGAGATCGGTCCGATC ACAGCGTGACTCTGGATCTATGACTTCGAGGTGGGACCACAGCGG Right flanking sequence: Indices 9606881 -- 9607380 CCTACATTAAACTATCCATGCTTATAAAATAATGTTAAGCAATTAATTGCGAAAACCCCAAGCAG CTGCAAGACAGAAAACCGAACGATAAGCCGGATCGCGATAGATACTGGGGTAAACTGTTTAGCTA GTTGTGAAGTTGTGCATTTTCTACCACTTTCTGGTTGGTTCGTATATATGGTAAATGTATTTGTC ACCCGTATCATTTGCTGTGGAGCGTTAAAGCGACAACAGCAGCAGCGGCAGCAGCAGCAGCCATT TCCAGGCCATCCGCGTAGTTACGCGTCTCCAGGCCCAATCCCGTATATATCTGGCCATAGTTGCA GGGGCCCAATTCCCTCCTGCCCCTTTTTAATTACGGGTCACAGTGGATGAGCGCAGGGGCGCAGC AACAGTTGCCACTGGTCGGTCGCTGCCACTTTTGTTACCATTTACATTTCCTGTCAACGGCATTT TCAATTTTCACTTTAACGCCTATTTGCTCCTCCATTTCTTTGCCT Found at i:9607120 original size:3 final size:3 Alignment explanation
Indices: 9607112--9607136 Score: 43 Period size: 3 Copynumber: 8.3 Consensus size: 3 9607102 AAAGCGACAA * 9607112 CAG CAG CAG CGG CAG CAG CAG CAG C 1 CAG CAG CAG CAG CAG CAG CAG CAG C 9607137 CATTTCCAGG Statistics Matches: 20, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 3 20 1.00 ACGTcount: A:0.28, C:0.36, G:0.36, T:0.00 Consensus pattern (3 bp): CAG Left flanking sequence: Indices 9606612 -- 9607111 TATTATTATTTTTGGGTCGAAAGCTTGAAAACCCATTACACCAGTTTTTATTTATTTTAACAGAT CGATGATTAATTTGATGCGCCAAAAATGAAATTATGGAAATATTTTGGAACACAATGGCTTAGAT GCCCCAATGACAGGCCCTTCTTGGAACAGCTGGAGCTTGGCGCTCTCGGAGCACGCGCTCATTAG AGATCGGTCCGATCACAGCGTGACTCTGGATCTATGACTTCGAGGTGGGACCACAGCGGGTGTGT GTGTGTGTGCCTACATTAAACTATCCATGCTTATAAAATAATGTTAAGCAATTAATTGCGAAAAC CCCAAGCAGCTGCAAGACAGAAAACCGAACGATAAGCCGGATCGCGATAGATACTGGGGTAAACT GTTTAGCTAGTTGTGAAGTTGTGCATTTTCTACCACTTTCTGGTTGGTTCGTATATATGGTAAAT GTATTTGTCACCCGTATCATTTGCTGTGGAGCGTTAAAGCGACAA Right flanking sequence: Indices 9607137 -- 9607636 CATTTCCAGGCCATCCGCGTAGTTACGCGTCTCCAGGCCCAATCCCGTATATATCTGGCCATAGT TGCAGGGGCCCAATTCCCTCCTGCCCCTTTTTAATTACGGGTCACAGTGGATGAGCGCAGGGGCG CAGCAACAGTTGCCACTGGTCGGTCGCTGCCACTTTTGTTACCATTTACATTTCCTGTCAACGGC ATTTTCAATTTTCACTTTAACGCCTATTTGCTCCTCCATTTCTTTGCCTCTCCCTGTTAAATTGC TCTTCTTGGTCTGTTAATTGTGAGTGTGTGCTACCAAGTGGATGCATAAATTGTATTTTATTTTT TGTGCCCTGTAACTTTGGCCCAAATGGCGATGCGGGCTGATCAGGTGAAAACAAAAGACGCAGCA AGCATTAGGCCCAGCAATGCCCCCGCCTCACCAAAAAGTTCACCCTCTGGCTGATCTGGCCCTGA TATTGTTGCCACTTGTGTATTCTCATGTTGTGGCTTTAGGAGAAA Found at i:9608166 original size:6 final size:6 Alignment explanation
Indices: 9608155--9608167 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 9608145 ACAGAAATTC 9608155 CTCCAT CTCCAT C 1 CTCCAT CTCCAT C 9608168 GCCGGAACTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.54, G:0.00, T:0.31 Consensus pattern (6 bp): CTCCAT Left flanking sequence: Indices 9607655 -- 9608154 ACCAGAGGAAAGTTGCTGTGTTTGGGGGGGAAGAACATACTTAGGTATCATTAGAAAATTTTTGA ATGTTTTAGTAAATGTTTACTAATTAAAGAAAATTCAAAACTATATTTATTTCATAGTTAATATG AACAGACAACAGTCTAATGATTCAAATGCCGTTCCTTTCTAAGGCGACCCATGAAACAGAATACA TATTTATACATACAAGTGACTCAAAATAAAAAGCAATCATGGCCAGTTATCGGAATGTTCAATTT ACAATACGTGTTAAGCGGCATAGATCGGCATTACCCAGTCCATTAATCATCCCCCTAATCTGGCG AATATTCCAAACGATAAACCCCTGAATATCTATGCTCTGCCAAAGGTTTCCACTGCTTTTTGTTG GCATATCCTTAAACAGAGTTAAACAGAACAATGGGGACTGATAAGGGGCATAATAAGTAATTAAA TTTCTGTGATGCTTATCGAGTATGTAGCCCCCACCACAGAAATTC Right flanking sequence: Indices 9608168 -- 9608667 GCCGGAACTTCAAAATCTCTCTCTTCTCTTCTCTCGAAAGAGAGGAAGCCTATGTGTGCGTGTTT ATCCGACCAATCGGAGGCGAGAAGAGACGACTGGAACTGGAAGCAACTGAGACTGCCTGGAAGGC AATGTATCTGACGGATACGTTTTACCACTCTGCCAGCTGCGTGGAGTTTTTTGGCAAATTATGCG GGTGGCTCGTCGCTGTATCGTCGCTTTCCCCGCTTTCCCGCTCCTCCGCCCACTTTCGAATATTT TGTTGGTTTTTGTAGGTGGAGCCAGAGCCATAATACCATTCCTTTGTTGACAAAACTTGGCACTA CTACTCGCTCGCTGAAGTTTGTTTTTGTCTGCTGCTGCCGCTGCTGCTCTTTTGTTTTTCGTATC TGCCAGATACGCGCGCACATCCCGCCCTGCAGGTTGTATTCGAGGTTCAGCGAAAAGGTCGTCAT TCTCACGGTTGTTTCCCATCGTCGGCGTCGCGTGCGCAATTCAGT Found at i:9608190 original size:2 final size:2 Alignment explanation
Indices: 9608183--9608202 Score: 26 Period size: 2 Copynumber: 11.0 Consensus size: 2 9608173 AACTTCAAAA 9608183 TC TC TC TC T- TC TC T- TC TC TC 1 TC TC TC TC TC TC TC TC TC TC TC 9608203 GAAAGAGAGG Statistics Matches: 16, Mismatches: 0, Indels: 4 0.80 0.00 0.20 Matches are distributed among these distances: 1 2 0.12 2 14 0.88 ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55 Consensus pattern (2 bp): TC Left flanking sequence: Indices 9607683 -- 9608182 GGAAGAACATACTTAGGTATCATTAGAAAATTTTTGAATGTTTTAGTAAATGTTTACTAATTAAA GAAAATTCAAAACTATATTTATTTCATAGTTAATATGAACAGACAACAGTCTAATGATTCAAATG CCGTTCCTTTCTAAGGCGACCCATGAAACAGAATACATATTTATACATACAAGTGACTCAAAATA AAAAGCAATCATGGCCAGTTATCGGAATGTTCAATTTACAATACGTGTTAAGCGGCATAGATCGG CATTACCCAGTCCATTAATCATCCCCCTAATCTGGCGAATATTCCAAACGATAAACCCCTGAATA TCTATGCTCTGCCAAAGGTTTCCACTGCTTTTTGTTGGCATATCCTTAAACAGAGTTAAACAGAA CAATGGGGACTGATAAGGGGCATAATAAGTAATTAAATTTCTGTGATGCTTATCGAGTATGTAGC CCCCACCACAGAAATTCCTCCATCTCCATCGCCGGAACTTCAAAA Right flanking sequence: Indices 9608203 -- 9608702 GAAAGAGAGGAAGCCTATGTGTGCGTGTTTATCCGACCAATCGGAGGCGAGAAGAGACGACTGGA ACTGGAAGCAACTGAGACTGCCTGGAAGGCAATGTATCTGACGGATACGTTTTACCACTCTGCCA GCTGCGTGGAGTTTTTTGGCAAATTATGCGGGTGGCTCGTCGCTGTATCGTCGCTTTCCCCGCTT TCCCGCTCCTCCGCCCACTTTCGAATATTTTGTTGGTTTTTGTAGGTGGAGCCAGAGCCATAATA CCATTCCTTTGTTGACAAAACTTGGCACTACTACTCGCTCGCTGAAGTTTGTTTTTGTCTGCTGC TGCCGCTGCTGCTCTTTTGTTTTTCGTATCTGCCAGATACGCGCGCACATCCCGCCCTGCAGGTT GTATTCGAGGTTCAGCGAAAAGGTCGTCATTCTCACGGTTGTTTCCCATCGTCGGCGTCGCGTGC GCAATTCAGTTCAATCCAATCCAATCCGTTCCGAGGAGCTTCAAC Found at i:9608197 original size:5 final size:5 Alignment explanation
Indices: 9608183--9608201 Score: 31 Period size: 5 Copynumber: 4.0 Consensus size: 5 9608173 AACTTCAAAA 9608183 TCTC- TCTCT TCTCT TCTCT 1 TCTCT TCTCT TCTCT TCTCT 9608202 CGAAAGAGAG Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 4 4 0.29 5 10 0.71 ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58 Consensus pattern (5 bp): TCTCT Left flanking sequence: Indices 9607683 -- 9608182 GGAAGAACATACTTAGGTATCATTAGAAAATTTTTGAATGTTTTAGTAAATGTTTACTAATTAAA GAAAATTCAAAACTATATTTATTTCATAGTTAATATGAACAGACAACAGTCTAATGATTCAAATG CCGTTCCTTTCTAAGGCGACCCATGAAACAGAATACATATTTATACATACAAGTGACTCAAAATA AAAAGCAATCATGGCCAGTTATCGGAATGTTCAATTTACAATACGTGTTAAGCGGCATAGATCGG CATTACCCAGTCCATTAATCATCCCCCTAATCTGGCGAATATTCCAAACGATAAACCCCTGAATA TCTATGCTCTGCCAAAGGTTTCCACTGCTTTTTGTTGGCATATCCTTAAACAGAGTTAAACAGAA CAATGGGGACTGATAAGGGGCATAATAAGTAATTAAATTTCTGTGATGCTTATCGAGTATGTAGC CCCCACCACAGAAATTCCTCCATCTCCATCGCCGGAACTTCAAAA Right flanking sequence: Indices 9608202 -- 9608701 CGAAAGAGAGGAAGCCTATGTGTGCGTGTTTATCCGACCAATCGGAGGCGAGAAGAGACGACTGG AACTGGAAGCAACTGAGACTGCCTGGAAGGCAATGTATCTGACGGATACGTTTTACCACTCTGCC AGCTGCGTGGAGTTTTTTGGCAAATTATGCGGGTGGCTCGTCGCTGTATCGTCGCTTTCCCCGCT TTCCCGCTCCTCCGCCCACTTTCGAATATTTTGTTGGTTTTTGTAGGTGGAGCCAGAGCCATAAT ACCATTCCTTTGTTGACAAAACTTGGCACTACTACTCGCTCGCTGAAGTTTGTTTTTGTCTGCTG CTGCCGCTGCTGCTCTTTTGTTTTTCGTATCTGCCAGATACGCGCGCACATCCCGCCCTGCAGGT TGTATTCGAGGTTCAGCGAAAAGGTCGTCATTCTCACGGTTGTTTCCCATCGTCGGCGTCGCGTG CGCAATTCAGTTCAATCCAATCCAATCCGTTCCGAGGAGCTTCAA Found at i:9608273 original size:6 final size:6 Alignment explanation
Indices: 9608262--9608274 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 9608252 AGAAGAGACG 9608262 ACTGGA ACTGGA A 1 ACTGGA ACTGGA A 9608275 GCAACTGAGA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.38, C:0.15, G:0.31, T:0.15 Consensus pattern (6 bp): ACTGGA Left flanking sequence: Indices 9607762 -- 9608261 ATATTTATTTCATAGTTAATATGAACAGACAACAGTCTAATGATTCAAATGCCGTTCCTTTCTAA GGCGACCCATGAAACAGAATACATATTTATACATACAAGTGACTCAAAATAAAAAGCAATCATGG CCAGTTATCGGAATGTTCAATTTACAATACGTGTTAAGCGGCATAGATCGGCATTACCCAGTCCA TTAATCATCCCCCTAATCTGGCGAATATTCCAAACGATAAACCCCTGAATATCTATGCTCTGCCA AAGGTTTCCACTGCTTTTTGTTGGCATATCCTTAAACAGAGTTAAACAGAACAATGGGGACTGAT AAGGGGCATAATAAGTAATTAAATTTCTGTGATGCTTATCGAGTATGTAGCCCCCACCACAGAAA TTCCTCCATCTCCATCGCCGGAACTTCAAAATCTCTCTCTTCTCTTCTCTCGAAAGAGAGGAAGC CTATGTGTGCGTGTTTATCCGACCAATCGGAGGCGAGAAGAGACG Right flanking sequence: Indices 9608275 -- 9608774 GCAACTGAGACTGCCTGGAAGGCAATGTATCTGACGGATACGTTTTACCACTCTGCCAGCTGCGT GGAGTTTTTTGGCAAATTATGCGGGTGGCTCGTCGCTGTATCGTCGCTTTCCCCGCTTTCCCGCT CCTCCGCCCACTTTCGAATATTTTGTTGGTTTTTGTAGGTGGAGCCAGAGCCATAATACCATTCC TTTGTTGACAAAACTTGGCACTACTACTCGCTCGCTGAAGTTTGTTTTTGTCTGCTGCTGCCGCT GCTGCTCTTTTGTTTTTCGTATCTGCCAGATACGCGCGCACATCCCGCCCTGCAGGTTGTATTCG AGGTTCAGCGAAAAGGTCGTCATTCTCACGGTTGTTTCCCATCGTCGGCGTCGCGTGCGCAATTC AGTTCAATCCAATCCAATCCGTTCCGAGGAGCTTCAACTAGCGACGGCTATCCGCGAGATACAAG TGCCCAGTGGATACAAGTGTCGCCTAATTGGATTACAATGCTCAA Found at i:9608529 original size:3 final size:3 Alignment explanation
Indices: 9608521--9608540 Score: 33 Period size: 3 Copynumber: 6.7 Consensus size: 3 9608511 TTGTTTTTGT * 9608521 CTG CTG CTG CCG CTG CTG CT 1 CTG CTG CTG CTG CTG CTG CT 9608541 CTTTTGTTTT Statistics Matches: 15, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 3 15 1.00 ACGTcount: A:0.00, C:0.40, G:0.30, T:0.30 Consensus pattern (3 bp): CTG Left flanking sequence: Indices 9608021 -- 9608520 AAAGGTTTCCACTGCTTTTTGTTGGCATATCCTTAAACAGAGTTAAACAGAACAATGGGGACTGA TAAGGGGCATAATAAGTAATTAAATTTCTGTGATGCTTATCGAGTATGTAGCCCCCACCACAGAA ATTCCTCCATCTCCATCGCCGGAACTTCAAAATCTCTCTCTTCTCTTCTCTCGAAAGAGAGGAAG CCTATGTGTGCGTGTTTATCCGACCAATCGGAGGCGAGAAGAGACGACTGGAACTGGAAGCAACT GAGACTGCCTGGAAGGCAATGTATCTGACGGATACGTTTTACCACTCTGCCAGCTGCGTGGAGTT TTTTGGCAAATTATGCGGGTGGCTCGTCGCTGTATCGTCGCTTTCCCCGCTTTCCCGCTCCTCCG CCCACTTTCGAATATTTTGTTGGTTTTTGTAGGTGGAGCCAGAGCCATAATACCATTCCTTTGTT GACAAAACTTGGCACTACTACTCGCTCGCTGAAGTTTGTTTTTGT Right flanking sequence: Indices 9608541 -- 9609040 CTTTTGTTTTTCGTATCTGCCAGATACGCGCGCACATCCCGCCCTGCAGGTTGTATTCGAGGTTC AGCGAAAAGGTCGTCATTCTCACGGTTGTTTCCCATCGTCGGCGTCGCGTGCGCAATTCAGTTCA ATCCAATCCAATCCGTTCCGAGGAGCTTCAACTAGCGACGGCTATCCGCGAGATACAAGTGCCCA GTGGATACAAGTGTCGCCTAATTGGATTACAATGCTCAAGTGTTGCCTGTTCGCAGGGCTTTCGA ATCGCGGAAAACTCATTTAGGAGCAGTTGAGGTTTTATTGGATATTTTTAATTATACCACCTAAT ACCTGGATTAAAGAAGCTGCTTCAATTGGAATATGGTTGTTATGTAAGTTCTAAATAGTCCCTTT TTCGGAGATTTTCAAATGTAAATTCGAAATTTTATTGCCAAAAAATACTTTTAATAGGACAATAA TCATATACTTTGTTCTCGAACCTTTTATCAAATATAATGGTAATT Found at i:9608677 original size:5 final size:5 Alignment explanation
Indices: 9608669--9608684 Score: 32 Period size: 5 Copynumber: 3.2 Consensus size: 5 9608659 CAATTCAGTT 9608669 CAATC CAATC CAATC C 1 CAATC CAATC CAATC C 9608685 GTTCCGAGGA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 11 1.00 ACGTcount: A:0.38, C:0.44, G:0.00, T:0.19 Consensus pattern (5 bp): CAATC Left flanking sequence: Indices 9608169 -- 9608668 CCGGAACTTCAAAATCTCTCTCTTCTCTTCTCTCGAAAGAGAGGAAGCCTATGTGTGCGTGTTTA TCCGACCAATCGGAGGCGAGAAGAGACGACTGGAACTGGAAGCAACTGAGACTGCCTGGAAGGCA ATGTATCTGACGGATACGTTTTACCACTCTGCCAGCTGCGTGGAGTTTTTTGGCAAATTATGCGG GTGGCTCGTCGCTGTATCGTCGCTTTCCCCGCTTTCCCGCTCCTCCGCCCACTTTCGAATATTTT GTTGGTTTTTGTAGGTGGAGCCAGAGCCATAATACCATTCCTTTGTTGACAAAACTTGGCACTAC TACTCGCTCGCTGAAGTTTGTTTTTGTCTGCTGCTGCCGCTGCTGCTCTTTTGTTTTTCGTATCT GCCAGATACGCGCGCACATCCCGCCCTGCAGGTTGTATTCGAGGTTCAGCGAAAAGGTCGTCATT CTCACGGTTGTTTCCCATCGTCGGCGTCGCGTGCGCAATTCAGTT Right flanking sequence: Indices 9608685 -- 9609184 GTTCCGAGGAGCTTCAACTAGCGACGGCTATCCGCGAGATACAAGTGCCCAGTGGATACAAGTGT CGCCTAATTGGATTACAATGCTCAAGTGTTGCCTGTTCGCAGGGCTTTCGAATCGCGGAAAACTC ATTTAGGAGCAGTTGAGGTTTTATTGGATATTTTTAATTATACCACCTAATACCTGGATTAAAGA AGCTGCTTCAATTGGAATATGGTTGTTATGTAAGTTCTAAATAGTCCCTTTTTCGGAGATTTTCA AATGTAAATTCGAAATTTTATTGCCAAAAAATACTTTTAATAGGACAATAATCATATACTTTGTT CTCGAACCTTTTATCAAATATAATGGTAATTATTGAAATATGCTTAAAATAGGTTTCACTAAGTT TCTAAATTATTCTGCTTGGAACCCAAAGGAATATGGATTAAAAATTAATTTGCTCACATTATTCA AGGCATAGAGCTACCGAAGAATTAAAAAGCTCTCAGTACAAATGT Found at i:9609559 original size:3 final size:3 Alignment explanation
Indices: 9609551--9609566 Score: 32 Period size: 3 Copynumber: 5.3 Consensus size: 3 9609541 TCAAAGAGCC 9609551 GAT GAT GAT GAT GAT G 1 GAT GAT GAT GAT GAT G 9609567 CCCCCCCGGC Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 13 1.00 ACGTcount: A:0.31, C:0.00, G:0.38, T:0.31 Consensus pattern (3 bp): GAT Left flanking sequence: Indices 9609051 -- 9609550 GCTTAAAATAGGTTTCACTAAGTTTCTAAATTATTCTGCTTGGAACCCAAAGGAATATGGATTAA AAATTAATTTGCTCACATTATTCAAGGCATAGAGCTACCGAAGAATTAAAAAGCTCTCAGTACAA ATGTTTCAAATTATTGCTGATCTGAACTGTGCCGACACGCGTTAAACCCAAGCCATCTGCGTAAG TGTTGAGCTTCCAAACACCTCAGATCAATCTCGGATGAAGAATGGGCCACAAATCAAACGATAAA GAGGCAGCGGGGGAGGTCAGGGAAAATGTAAATGATTTCAAACGCTTTATTATCACGCTGAGCGC GTTCCACAGCTTAGTTAATGGCACTCCGGTCCAGTCCAATCCGCTCCAAAGAGCCGCGGGGTGTG CCTCGTATTTTGGATGTTGGATTTCGGAAGGGGGATCTCGAATCTTGGAAACCGGCGGACCACAC ACAGTCGTAGGCGGAGCGGCGCTCGAGTGAAAGGGTCAAAGAGCC Right flanking sequence: Indices 9609567 -- 9610066 CCCCCCCGGCCCCTTCGATTTATAGAGACATATTTTCTAGGTGACAAACTTATTATGAGCCCTGG ACAGAGGAGGCCCAAAAATACAGATCTCGAACGAAGTGAGACGCTATCAGCATCAGATAAGCCCA ACTAACGAGCGCCCCGAAGTGTCGAGCAGTCAATTTACGGACCCAAAACAAAGCGAGCCACTAGC CACGAACAGGTTCAATCGGGGGAAACCAAAGACCACCAGGCGAACCGTAGCACAGGTATTTGGTG TGTGGTTCTTGGTGCTAGATGCTGTGCAACCTGCTGACTTCCAAGTACACATAAAAACACTCAGG GGACCGAGGCGAATCGATCCATCGGCTTCGAAATCGATGGAAGACAAATTTATTGCTAATTGCAG AGCTCGCTCTCTAATAACTCCCACACATGGAGAATCTCGGCTGAGGCCCTCCATCGAGTCTAGCG ATTCCCAGCTGACTCACGATCGGAGTGTCGGTTTAATATGCATCT Found at i:9610238 original size:5 final size:5 Alignment explanation
Indices: 9610219--9610242 Score: 27 Period size: 5 Copynumber: 4.8 Consensus size: 5 9610209 TTTCATTTGA * * * 9610219 TTGGT TTGTG TTGGG TTGGG ATGG 1 TTGGG TTGGG TTGGG TTGGG TTGG 9610243 CCCCCTACGA Statistics Matches: 15, Mismatches: 4, Indels: 0 0.79 0.21 0.00 Matches are distributed among these distances: 5 15 1.00 ACGTcount: A:0.04, C:0.00, G:0.50, T:0.46 Consensus pattern (5 bp): TTGGG Left flanking sequence: Indices 9609719 -- 9610218 CGAGCAGTCAATTTACGGACCCAAAACAAAGCGAGCCACTAGCCACGAACAGGTTCAATCGGGGG AAACCAAAGACCACCAGGCGAACCGTAGCACAGGTATTTGGTGTGTGGTTCTTGGTGCTAGATGC TGTGCAACCTGCTGACTTCCAAGTACACATAAAAACACTCAGGGGACCGAGGCGAATCGATCCAT CGGCTTCGAAATCGATGGAAGACAAATTTATTGCTAATTGCAGAGCTCGCTCTCTAATAACTCCC ACACATGGAGAATCTCGGCTGAGGCCCTCCATCGAGTCTAGCGATTCCCAGCTGACTCACGATCG GAGTGTCGGTTTAATATGCATCTCCGCCTCCTCAACTGGCGCTCGAATTACGATTGTGGCCAGCT TGGATTACCTGGTGCACAAGATTTGGGGCTAACGGTACCAGCCCTCTAAACTGGGCCTAAATAAC CATGCGTTTCATGAGGCCCATAAACCTGGCAAACGTTTCATTTGA Right flanking sequence: Indices 9610243 -- 9610742 CCCCCTACGAAACAGTTTAGGGCGCAATTAAGATAGGATTTCAATTCCTTAAACGATGCTTAGGC TTTGGCGATAAAGTCACAGTTAAATGGATCACTTAAAGTTTTTACTCGATGTAAAGAGTTTTAAT GTAAATAAATTCGATTTAAAAGTTAATGCTGTGACTCACAGTTTTGCCTTAACTTAGATTCCAAA AGGGCAGTGGTGTTTTTTTATTATGTGGCTACTAGAAGTGATATAAAAATCTGAACTCAAGTTAA AGTATGTTTTGTGCTCTTTGGCAAAATTCAAATATAATAATATAGTATTCTTAACTATGAATATA AAATGCAACTTATTATATATAAAATCCTCTACAGAAATGGCTACAGCTTCAAGACGCAGCAACTT CTCACACAGCAACCCGATCATTCTCAGCTTACCCAGTTTGTCCAGCCCCAAAGTCAGAGTACGCA TTCGGTGCATCCGGGTCCAAGTCCTGGTCAACAGCAGGCGGGTGG Found at i:9612164 original size:3 final size:3 Alignment explanation
Indices: 9612142--9612169 Score: 28 Period size: 3 Copynumber: 9.3 Consensus size: 3 9612132 AGTACGAAAT * * * * 9612142 GCA ACA GCA CCA CCA CCA GCA GCA GCA G 1 GCA GCA GCA GCA GCA GCA GCA GCA GCA G 9612170 AGCCACCAAC Statistics Matches: 21, Mismatches: 4, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 3 21 1.00 ACGTcount: A:0.36, C:0.43, G:0.21, T:0.00 Consensus pattern (3 bp): GCA Left flanking sequence: Indices 9611642 -- 9612141 TCACAATCCTCGAATTACGGCACCAATTCTTGGCCACTAAGTGGATCCGAGTCATCGGCACCCTG CGAGACGGCAGCTAATGTGTTTACGGTCAACCACCAGCACATCACCTATAACTATCCCATCTACC ATGCAACTCCAGCGGCGGCCACCGCGGCACCTAGTAAATCTCCCAGTTTGCCCTACGCCTGCAGC ATTTCGGAACTGGCCGCATACCAGCAATCCTCCAGCGGGAACAGCTTTGCGATGGGTGTTCCCGT GCACGGACACACACAATGCCAGGCAGTAGCCTATGATTCCAGCCCGCAACTGGCCACTCCGGAAC CGGAGTTCATCAACTACTCGCAGATCAAGCATTTGGGTGGTGGCGGTGGTCAGGAGGAGATCAGC TGCAAGGCCGAACCGGGACCCACCATTAAGTACAATGCCACCGTGGAGACGCAGCCGTATGTGGA GGACAACTACGATTACTACTATAGCCCCAAGGCGGAGTACGAAAT Right flanking sequence: Indices 9612170 -- 9612669 AGCCACCAACAGTTCGGTGGAAATCAGACAGCGGGACATCACTACTACGAGAGCAGTAGTGGCTA TAATGGAGTCAGCTATTTCGACACAGGAACTACTACGGCACCAGGAAATACTGCAACCGGAAATG GCCTGGAAGTCGGATACGGCGGCTACTACGATCACTACACCAGCTACGAGCAACAAATGGCGGTA GCAGGTGGATTTGCCACTGCCGGAGGATCCACTGCGCCGACAGTGGCCGCGCCCCCTGGCCATCC ACCGCCTCCACCACCACCGCCCACGCTGACGTACCACCATCACCATCACCACCACTTGCACCACC CAGCAGCAGCTACAGGCCTAGCCCCATCGGTCACCCATTGAATAGTACTTAACCAATCCGGACAC CGGAGGATTACTCATAGTCGATAGCTAAGCATAGTAACATAGTGTTTAAAATAGTGGTGAAATCT TAATTTCCATCTGTACGTGTAGTGTTAAACGGTTTACCAATTGTT Found at i:9612169 original size:6 final size:6 Alignment explanation
Indices: 9612142--9612168 Score: 33 Period size: 6 Copynumber: 4.5 Consensus size: 6 9612132 AGTACGAAAT * * * 9612142 GCAACA GCACCA CCACCA GCAGCA GCA 1 GCACCA GCACCA GCACCA GCACCA GCA 9612169 GAGCCACCAA Statistics Matches: 17, Mismatches: 4, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 6 17 1.00 ACGTcount: A:0.37, C:0.44, G:0.19, T:0.00 Consensus pattern (6 bp): GCACCA Left flanking sequence: Indices 9611642 -- 9612141 TCACAATCCTCGAATTACGGCACCAATTCTTGGCCACTAAGTGGATCCGAGTCATCGGCACCCTG CGAGACGGCAGCTAATGTGTTTACGGTCAACCACCAGCACATCACCTATAACTATCCCATCTACC ATGCAACTCCAGCGGCGGCCACCGCGGCACCTAGTAAATCTCCCAGTTTGCCCTACGCCTGCAGC ATTTCGGAACTGGCCGCATACCAGCAATCCTCCAGCGGGAACAGCTTTGCGATGGGTGTTCCCGT GCACGGACACACACAATGCCAGGCAGTAGCCTATGATTCCAGCCCGCAACTGGCCACTCCGGAAC CGGAGTTCATCAACTACTCGCAGATCAAGCATTTGGGTGGTGGCGGTGGTCAGGAGGAGATCAGC TGCAAGGCCGAACCGGGACCCACCATTAAGTACAATGCCACCGTGGAGACGCAGCCGTATGTGGA GGACAACTACGATTACTACTATAGCCCCAAGGCGGAGTACGAAAT Right flanking sequence: Indices 9612169 -- 9612668 GAGCCACCAACAGTTCGGTGGAAATCAGACAGCGGGACATCACTACTACGAGAGCAGTAGTGGCT ATAATGGAGTCAGCTATTTCGACACAGGAACTACTACGGCACCAGGAAATACTGCAACCGGAAAT GGCCTGGAAGTCGGATACGGCGGCTACTACGATCACTACACCAGCTACGAGCAACAAATGGCGGT AGCAGGTGGATTTGCCACTGCCGGAGGATCCACTGCGCCGACAGTGGCCGCGCCCCCTGGCCATC CACCGCCTCCACCACCACCGCCCACGCTGACGTACCACCATCACCATCACCACCACTTGCACCAC CCAGCAGCAGCTACAGGCCTAGCCCCATCGGTCACCCATTGAATAGTACTTAACCAATCCGGACA CCGGAGGATTACTCATAGTCGATAGCTAAGCATAGTAACATAGTGTTTAAAATAGTGGTGAAATC TTAATTTCCATCTGTACGTGTAGTGTTAAACGGTTTACCAATTGT Found at i:9612445 original size:3 final size:3 Alignment explanation
Indices: 9612428--9612447 Score: 26 Period size: 3 Copynumber: 6.7 Consensus size: 3 9612418 CCCTGGCCAT * * 9612428 CCA CCG CCT CCA CCA CCA CC 1 CCA CCA CCA CCA CCA CCA CC 9612448 GCCCACGCTG Statistics Matches: 14, Mismatches: 3, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 3 14 1.00 ACGTcount: A:0.20, C:0.70, G:0.05, T:0.05 Consensus pattern (3 bp): CCA Left flanking sequence: Indices 9611928 -- 9612427 TAGCCTATGATTCCAGCCCGCAACTGGCCACTCCGGAACCGGAGTTCATCAACTACTCGCAGATC AAGCATTTGGGTGGTGGCGGTGGTCAGGAGGAGATCAGCTGCAAGGCCGAACCGGGACCCACCAT TAAGTACAATGCCACCGTGGAGACGCAGCCGTATGTGGAGGACAACTACGATTACTACTATAGCC CCAAGGCGGAGTACGAAATGCAACAGCACCACCACCAGCAGCAGCAGAGCCACCAACAGTTCGGT GGAAATCAGACAGCGGGACATCACTACTACGAGAGCAGTAGTGGCTATAATGGAGTCAGCTATTT CGACACAGGAACTACTACGGCACCAGGAAATACTGCAACCGGAAATGGCCTGGAAGTCGGATACG GCGGCTACTACGATCACTACACCAGCTACGAGCAACAAATGGCGGTAGCAGGTGGATTTGCCACT GCCGGAGGATCCACTGCGCCGACAGTGGCCGCGCCCCCTGGCCAT Right flanking sequence: Indices 9612448 -- 9612947 GCCCACGCTGACGTACCACCATCACCATCACCACCACTTGCACCACCCAGCAGCAGCTACAGGCC TAGCCCCATCGGTCACCCATTGAATAGTACTTAACCAATCCGGACACCGGAGGATTACTCATAGT CGATAGCTAAGCATAGTAACATAGTGTTTAAAATAGTGGTGAAATCTTAATTTCCATCTGTACGT GTAGTGTTAAACGGTTTACCAATTGTTTTTCTCGGCAAATAAATTATGAAAAGTGTTGATTTGTA AAAGTAAATGTATTTAATTTAAGTGCGTAAATATAATTTCTTATTGCGCGACCAATTCAAACATA GCTAATTTTCAGCGGTCATGATGGTGCGGTTCTTGAAATCAGAGATAGATGTCGCGCTGTAAAAA AATTGTTGGTAAGAACCATGTAAAATGTAATGGTAAAAACCATGTAATGTAGACAAGCAGGTGCT CACTTAACCATAACTGTAGTAATTTTAGGACGCATTTAATGATTT Found at i:9612494 original size:3 final size:3 Alignment explanation
Indices: 9612462--9612484 Score: 32 Period size: 3 Copynumber: 7.7 Consensus size: 3 9612452 ACGCTGACGT * * 9612462 ACC ACC ATC ACC ATC ACC ACC AC 1 ACC ACC ACC ACC ACC ACC ACC AC 9612485 TTGCACCACC Statistics Matches: 16, Mismatches: 4, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 3 16 1.00 ACGTcount: A:0.35, C:0.57, G:0.00, T:0.09 Consensus pattern (3 bp): ACC Left flanking sequence: Indices 9611962 -- 9612461 GGAACCGGAGTTCATCAACTACTCGCAGATCAAGCATTTGGGTGGTGGCGGTGGTCAGGAGGAGA TCAGCTGCAAGGCCGAACCGGGACCCACCATTAAGTACAATGCCACCGTGGAGACGCAGCCGTAT GTGGAGGACAACTACGATTACTACTATAGCCCCAAGGCGGAGTACGAAATGCAACAGCACCACCA CCAGCAGCAGCAGAGCCACCAACAGTTCGGTGGAAATCAGACAGCGGGACATCACTACTACGAGA GCAGTAGTGGCTATAATGGAGTCAGCTATTTCGACACAGGAACTACTACGGCACCAGGAAATACT GCAACCGGAAATGGCCTGGAAGTCGGATACGGCGGCTACTACGATCACTACACCAGCTACGAGCA ACAAATGGCGGTAGCAGGTGGATTTGCCACTGCCGGAGGATCCACTGCGCCGACAGTGGCCGCGC CCCCTGGCCATCCACCGCCTCCACCACCACCGCCCACGCTGACGT Right flanking sequence: Indices 9612485 -- 9612984 TTGCACCACCCAGCAGCAGCTACAGGCCTAGCCCCATCGGTCACCCATTGAATAGTACTTAACCA ATCCGGACACCGGAGGATTACTCATAGTCGATAGCTAAGCATAGTAACATAGTGTTTAAAATAGT GGTGAAATCTTAATTTCCATCTGTACGTGTAGTGTTAAACGGTTTACCAATTGTTTTTCTCGGCA AATAAATTATGAAAAGTGTTGATTTGTAAAAGTAAATGTATTTAATTTAAGTGCGTAAATATAAT TTCTTATTGCGCGACCAATTCAAACATAGCTAATTTTCAGCGGTCATGATGGTGCGGTTCTTGAA ATCAGAGATAGATGTCGCGCTGTAAAAAAATTGTTGGTAAGAACCATGTAAAATGTAATGGTAAA AACCATGTAATGTAGACAAGCAGGTGCTCACTTAACCATAACTGTAGTAATTTTAGGACGCATTT AATGATTTGTAGTTTAAAATCGATAGATAGTAAGATATACTTTAA Found at i:9613163 original size:6 final size:6 Alignment explanation
Indices: 9613152--9613168 Score: 34 Period size: 6 Copynumber: 2.8 Consensus size: 6 9613142 TCACAATGAC 9613152 ACACAG ACACAG ACACA 1 ACACAG ACACAG ACACA 9613169 CAGACATAAC Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 11 1.00 ACGTcount: A:0.53, C:0.35, G:0.12, T:0.00 Consensus pattern (6 bp): ACACAG Left flanking sequence: Indices 9612652 -- 9613151 AACGGTTTACCAATTGTTTTTCTCGGCAAATAAATTATGAAAAGTGTTGATTTGTAAAAGTAAAT GTATTTAATTTAAGTGCGTAAATATAATTTCTTATTGCGCGACCAATTCAAACATAGCTAATTTT CAGCGGTCATGATGGTGCGGTTCTTGAAATCAGAGATAGATGTCGCGCTGTAAAAAAATTGTTGG TAAGAACCATGTAAAATGTAATGGTAAAAACCATGTAATGTAGACAAGCAGGTGCTCACTTAACC ATAACTGTAGTAATTTTAGGACGCATTTAATGATTTGTAGTTTAAAATCGATAGATAGTAAGATA TACTTTAATACGAATGATGTTTTATAATTGGCGGAAACATTTAAAGAAAAACAAATTGGCTGCCA AGACCCAAATTTTGTACCGCTTACATGGCTTGCAGTTTTTTTTTAAAAAGCCTCCTACCGGTAAG AAACTGAACTACTGCAGAGTTGCTTTACGATAAACTCACAATGAC Right flanking sequence: Indices 9613169 -- 9613668 CAGACATAACCAGACTAAAGAGAATAGTACTACAAGTTATAATCGCTATCTTCAGCAAGAGGATT TCACATTTAAAGTAATCGCATAGTGGCCAGCAAAACCTATCGCATAGATGTGCCAATCGGTCTAT CCATTCGAAATTCACCTTCACCAAACGCGACATACACATATGCAAAAAGAGAGCGTATAGCAATG AGAAGCGTGAGCGTGAGTAAAAAATCTATAAAAGCAACTGCGACGTGCTCATTTTGGTAAAAAAT TTAGCTGTGCTGCAAAGAGCTGCCCGAGTGGTAATTAAGTAACTTTTGTACATTTCTACCGGTTC CGTCTCCACATCTCCCATCCAACATGGTGTACCAGGTGAAAGATAAGGTGAGTCACTTCAACCGG ATCTATGGACGCATCACATCCGTCATCTATTGGGTAACTCGATAGCGCTACCCTTTGACCCCTCA GTTCCAGTTACACGTTTATTTTTTCGCTCCGGACTTTGAAAATAT Found at i:9613378 original size:6 final size:6 Alignment explanation
Indices: 9613367--9613380 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 9613357 AGCAATGAGA 9613367 AGCGTG AGCGTG AG 1 AGCGTG AGCGTG AG 9613381 TAAAAAATCT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.21, C:0.14, G:0.50, T:0.14 Consensus pattern (6 bp): AGCGTG Left flanking sequence: Indices 9612867 -- 9613366 ATGGTAAAAACCATGTAATGTAGACAAGCAGGTGCTCACTTAACCATAACTGTAGTAATTTTAGG ACGCATTTAATGATTTGTAGTTTAAAATCGATAGATAGTAAGATATACTTTAATACGAATGATGT TTTATAATTGGCGGAAACATTTAAAGAAAAACAAATTGGCTGCCAAGACCCAAATTTTGTACCGC TTACATGGCTTGCAGTTTTTTTTTAAAAAGCCTCCTACCGGTAAGAAACTGAACTACTGCAGAGT TGCTTTACGATAAACTCACAATGACACACAGACACAGACACACAGACATAACCAGACTAAAGAGA ATAGTACTACAAGTTATAATCGCTATCTTCAGCAAGAGGATTTCACATTTAAAGTAATCGCATAG TGGCCAGCAAAACCTATCGCATAGATGTGCCAATCGGTCTATCCATTCGAAATTCACCTTCACCA AACGCGACATACACATATGCAAAAAGAGAGCGTATAGCAATGAGA Right flanking sequence: Indices 9613381 -- 9613880 TAAAAAATCTATAAAAGCAACTGCGACGTGCTCATTTTGGTAAAAAATTTAGCTGTGCTGCAAAG AGCTGCCCGAGTGGTAATTAAGTAACTTTTGTACATTTCTACCGGTTCCGTCTCCACATCTCCCA TCCAACATGGTGTACCAGGTGAAAGATAAGGTGAGTCACTTCAACCGGATCTATGGACGCATCAC ATCCGTCATCTATTGGGTAACTCGATAGCGCTACCCTTTGACCCCTCAGTTCCAGTTACACGTTT ATTTTTTCGCTCCGGACTTTGAAAATATGGCATTGGAAGCGGCATTCCAATTAGCCACTTACTTT GAATGATTGGATTCGCTACGCTTTTTGCCATACGCTCTCCCGCGAATAGAAGGAACTCACGTTCG GTCTAGACGAGCGAGAAAGCGGAGAGCAAACGAGAAAGTTCCGAATAGCAGCACAGCGAAATGAT AATGATATCATCCCGTGGACCGCAAAACGGGTCTCAACGGAAACC Found at i:9613841 original size:6 final size:6 Alignment explanation
Indices: 9613830--9613842 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 9613820 AGCACAGCGA 9613830 AATGAT AATGAT A 1 AATGAT AATGAT A 9613843 TCATCCCGTG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.54, C:0.00, G:0.15, T:0.31 Consensus pattern (6 bp): AATGAT Left flanking sequence: Indices 9613330 -- 9613829 ATACACATATGCAAAAAGAGAGCGTATAGCAATGAGAAGCGTGAGCGTGAGTAAAAAATCTATAA AAGCAACTGCGACGTGCTCATTTTGGTAAAAAATTTAGCTGTGCTGCAAAGAGCTGCCCGAGTGG TAATTAAGTAACTTTTGTACATTTCTACCGGTTCCGTCTCCACATCTCCCATCCAACATGGTGTA CCAGGTGAAAGATAAGGTGAGTCACTTCAACCGGATCTATGGACGCATCACATCCGTCATCTATT GGGTAACTCGATAGCGCTACCCTTTGACCCCTCAGTTCCAGTTACACGTTTATTTTTTCGCTCCG GACTTTGAAAATATGGCATTGGAAGCGGCATTCCAATTAGCCACTTACTTTGAATGATTGGATTC GCTACGCTTTTTGCCATACGCTCTCCCGCGAATAGAAGGAACTCACGTTCGGTCTAGACGAGCGA GAAAGCGGAGAGCAAACGAGAAAGTTCCGAATAGCAGCACAGCGA Right flanking sequence: Indices 9613843 -- 9614342 TCATCCCGTGGACCGCAAAACGGGTCTCAACGGAAACCGAATTTTGAAATTGAAATATTCCGGAC CGAGCTAATCGGAAATAGTGCGAACAAGATATACGTACTATAGAAACCACATATGTACGGATGTG TGTGCGACTGGCATGAATTTGCAATTCATTATCGTGGTCGAGGCCTGGTTTTTTGGTTAGAAATA TTTCGAATAGTTGCTATAGCACAGGGTGTGCTCTCCACACATAAGTTGCGCGCCATGCAAGTTGA TCCAAAGCCAAGAAAACAAAAGACGCGAGTGCGCGGGGTGAAGAACCGGTTCCATTTCATGAATA CAAAGTTACGTCAGGAAATATTGGGAAGTAAATACGTGAAAGCATGCCTTCTTATTTTATTTCTC AATATTAGTTTATTTATATTTGTATACACACTTAAACACTATCAAACATTGACTCTCGCGGTCTA GTTCTATACAGCAAACCACACAACAATAAGCTCAAAAATCAAAAA Found at i:9613897 original size:6 final size:6 Alignment explanation
Indices: 9613886--9613898 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 9613876 AAACCGAATT 9613886 TTGAAA TTGAAA T 1 TTGAAA TTGAAA T 9613899 ATTCCGGACC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.46, C:0.00, G:0.15, T:0.38 Consensus pattern (6 bp): TTGAAA Left flanking sequence: Indices 9613386 -- 9613885 AATCTATAAAAGCAACTGCGACGTGCTCATTTTGGTAAAAAATTTAGCTGTGCTGCAAAGAGCTG CCCGAGTGGTAATTAAGTAACTTTTGTACATTTCTACCGGTTCCGTCTCCACATCTCCCATCCAA CATGGTGTACCAGGTGAAAGATAAGGTGAGTCACTTCAACCGGATCTATGGACGCATCACATCCG TCATCTATTGGGTAACTCGATAGCGCTACCCTTTGACCCCTCAGTTCCAGTTACACGTTTATTTT TTCGCTCCGGACTTTGAAAATATGGCATTGGAAGCGGCATTCCAATTAGCCACTTACTTTGAATG ATTGGATTCGCTACGCTTTTTGCCATACGCTCTCCCGCGAATAGAAGGAACTCACGTTCGGTCTA GACGAGCGAGAAAGCGGAGAGCAAACGAGAAAGTTCCGAATAGCAGCACAGCGAAATGATAATGA TATCATCCCGTGGACCGCAAAACGGGTCTCAACGGAAACCGAATT Right flanking sequence: Indices 9613899 -- 9614398 ATTCCGGACCGAGCTAATCGGAAATAGTGCGAACAAGATATACGTACTATAGAAACCACATATGT ACGGATGTGTGTGCGACTGGCATGAATTTGCAATTCATTATCGTGGTCGAGGCCTGGTTTTTTGG TTAGAAATATTTCGAATAGTTGCTATAGCACAGGGTGTGCTCTCCACACATAAGTTGCGCGCCAT GCAAGTTGATCCAAAGCCAAGAAAACAAAAGACGCGAGTGCGCGGGGTGAAGAACCGGTTCCATT TCATGAATACAAAGTTACGTCAGGAAATATTGGGAAGTAAATACGTGAAAGCATGCCTTCTTATT TTATTTCTCAATATTAGTTTATTTATATTTGTATACACACTTAAACACTATCAAACATTGACTCT CGCGGTCTAGTTCTATACAGCAAACCACACAACAATAAGCTCAAAAATCAAAAAATGCTTATCGA AGGCATAAGGAATCCACGAAAACATCAAAACATTTATGCATACTG Found at i:9615296 original size:6 final size:6 Alignment explanation
Indices: 9615282--9615297 Score: 25 Period size: 6 Copynumber: 2.7 Consensus size: 6 9615272 GATAGTACTA * 9615282 ATTTAC ATTTTC ATTT 1 ATTTAC ATTTAC ATTT 9615298 GCAGGCCGAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.25, C:0.12, G:0.00, T:0.62 Consensus pattern (6 bp): ATTTAC Left flanking sequence: Indices 9614782 -- 9615281 AATTAAAGGTCATTGGGAAAACGTGTCACGGGCAGAGAAATGGGTGGAAGAAAGGGGATGGAACT GCCCACGACCGCCACACCTTTCGGCATACATACATATAATTTGGAAATTCTTTAAATATTGATTT GCTTTGCTGCCCAATGGGTGCAATACAGAAACTGAAATGAAATTGACCCGATTTCACAAGTTTAT GAAGCACACACACATATTTAACCCGTCAATCGGCGATTATTGGGGCTGATTACAGCTTGGCAACT TTGGGGATGTCTGACAACGTTGTGTTTGCAGGGAACAGGCTTATCGGGCGAGATAGTAGCGGGGC CTCCCCAACGCAATATGTATATTTACAATAGCACCGGATCAATGCTCCACAATCGGAAATCATAA AGTTTGAAAACATGACCACCACCTGCTAAAGGGAAAATTACTGAAACATCTCTAGGGAGTGGGAA ATTATTAGCGCTAATGTATGATGATATTACTCAGAGATAGTACTA Right flanking sequence: Indices 9615298 -- 9615797 GCAGGCCGATCTCGATGGACAGCTGACCAAGGCATCCGGCAAGCTGGTGGTGCTGGATTTCTTCG CCACTTGGTGCGGACCCTGCAAGATGATCTCGCCCAAACTGGTTGAGCTTTCCACGCAGTTCGCC GACAACGTCGTCGTCCTGAAGGTAAATCTAAAAATGTGCTCAGCTTTATTTTATTTGCTTAACAC TTTTTATGGAAATCCTTACTAAATGCCCTTCTCCTACAGGTCGATGTGGACGAATGCGAAGACAT TGCAATGGAATACAACATCTCCAGCATGCCCACCTTCGTGTTCCTCAAGAACGGCGTCAAGGTCG AAGAGTTCGCCGGAGCCAACGCCAAGCGTCTGGAGGATGTCATCAAGGCCAATATCTAAGTGGGC AGCGCATAGACGTCTGGCCGTCCCCCTGATCCACCTATGAGTTTTCTTCATAACATTTAGTTAAT TAATTAATTCCATAAGTGCAGGGTTTTGCTCCATTCCGCCTGCTC Found at i:9615757 original size:4 final size:4 Alignment explanation
Indices: 9615744--9615761 Score: 29 Period size: 4 Copynumber: 4.5 Consensus size: 4 9615734 TTCATAACAT * 9615744 TTAG TTAA TTAA TTAA TT 1 TTAA TTAA TTAA TTAA TT 9615762 CCATAAGTGC Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 4 13 1.00 ACGTcount: A:0.39, C:0.00, G:0.06, T:0.56 Consensus pattern (4 bp): TTAA Left flanking sequence: Indices 9615244 -- 9615743 GCGCTAATGTATGATGATATTACTCAGAGATAGTACTAATTTACATTTTCATTTGCAGGCCGATC TCGATGGACAGCTGACCAAGGCATCCGGCAAGCTGGTGGTGCTGGATTTCTTCGCCACTTGGTGC GGACCCTGCAAGATGATCTCGCCCAAACTGGTTGAGCTTTCCACGCAGTTCGCCGACAACGTCGT CGTCCTGAAGGTAAATCTAAAAATGTGCTCAGCTTTATTTTATTTGCTTAACACTTTTTATGGAA ATCCTTACTAAATGCCCTTCTCCTACAGGTCGATGTGGACGAATGCGAAGACATTGCAATGGAAT ACAACATCTCCAGCATGCCCACCTTCGTGTTCCTCAAGAACGGCGTCAAGGTCGAAGAGTTCGCC GGAGCCAACGCCAAGCGTCTGGAGGATGTCATCAAGGCCAATATCTAAGTGGGCAGCGCATAGAC GTCTGGCCGTCCCCCTGATCCACCTATGAGTTTTCTTCATAACAT Right flanking sequence: Indices 9615762 -- 9616261 CCATAAGTGCAGGGTTTTGCTCCATTCCGCCTGCTCCGCCTTGTCCTTGAATCCCTTAGAGCTGC AGTGCAGTTCGCAAGGTGAAGGTCAGCAGTGGCAGCAGTTGGAACAGCAACAAACGTGAGAAACT AAGTGGCTTTTAAACGTAAAATTTGCTTTGTTAACAAAATCAATAAATCACACAAAGATTGTTCA TTTTTGTATGAAAAACATTAGAAAACGCAGTTGTAGCCAGTTGTCCAAGAGAATACGCTAAACAA TAAATGTATTACACACTCGCCGTTTGTAACCGATTAAATTGTTTTGCAAAATTCTGAAGGGGAAC CTGGGGTGAGGTCGGATCTAGGAATGACACATAAAGTTGTGAAATGAAAGCCAAGTCAAATATCA GTAGCCAACAAGCAGACAAATGTCGTTACGGTTAAGTAATAACGATTAAAACCGGGTAACTACCG ATTAGATAAGATACGGCAACAAATTTGTATACTCCAAAGGCATAT Found at i:9616502 original size:6 final size:6 Alignment explanation
Indices: 9616491--9616503 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 9616481 TGAACTTATT 9616491 TGAAAA TGAAAA T 1 TGAAAA TGAAAA T 9616504 AAGGTAAAAG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.62, C:0.00, G:0.15, T:0.23 Consensus pattern (6 bp): TGAAAA Left flanking sequence: Indices 9615991 -- 9616490 AGCCAGTTGTCCAAGAGAATACGCTAAACAATAAATGTATTACACACTCGCCGTTTGTAACCGAT TAAATTGTTTTGCAAAATTCTGAAGGGGAACCTGGGGTGAGGTCGGATCTAGGAATGACACATAA AGTTGTGAAATGAAAGCCAAGTCAAATATCAGTAGCCAACAAGCAGACAAATGTCGTTACGGTTA AGTAATAACGATTAAAACCGGGTAACTACCGATTAGATAAGATACGGCAACAAATTTGTATACTC CAAAGGCATATCAAGTGCGTGATCAAAATGGCCATTTCATAATTAAAATCCACCAGATTAAAGCT AATTTTAAAATTTCCATTTTGAGAAGGCTCTTTTTATCTGTCAAAAAATATATTTTTACATATGT ATATTGACAACGAAATTCAAAAACAAATTATATATTTCCTTGAATCCGTGATTGAACTATAGAAT ATCACTAGGCATTATTAAAAAATTTAATAAATAAATGAACTTATT Right flanking sequence: Indices 9616504 -- 9617003 AAGGTAAAAGGTACCTTTCTTGCGATCAATAATATCAAAAGATTTAAATTTGTCCAAATTATGTT TGACAGCATATCGAAAGTTGCCAAGTTGATTCTTGCCATAAAGTTAAAGAACGAAAGTAAATGGG AGACAATATAAAAACAAAGTGATTAATTAAGAAACTATTTTTAATTAATTCAACATTTATTTTAA ACATTTGAAAATAAGCCGTTAGGCTTGGACGAACAATCGATACTTGGCTTAGTGGGGACAAAAAC CGAATGCAACACTGCGCCAGCTGTGTTGGTGGTGGGAGCGAAAATTGCCCGATTTTTCAGTAGTG TTTTTTTTTCAGTAGTGTCAGACTCTCGGTGACAACAACACGTCGGGAAATTGCATCGCTGTGGA AAACAATAAAATAGAGCGTGAGAGTGAGAGACAGTCGCGCGGGTGTCGGTCAGAAATAAGCAATA TTTTCTGTGATTTTTGAGTGTGACGTCCTGTTTTGAGTGCTTCCG Found at