TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_3R assembled 2004-3-5 md5checksum:6b279651b3b268f11e0dd1d87ded0ccc Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 27905053 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28 Found at i: i:18381935 original size:6 final size:6 Alignment explanation
Indices: 18381924--18381946 Score: 39 Period size: 6 Copynumber: 3.8 Consensus size: 6 18381914 TTCGTAACTC * 18381924 TTACCT TTACCT TTACCA TTACC 1 TTACCT TTACCT TTACCT TTACC 18381947 AACTATCAGT Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 6 16 1.00 ACGTcount: A:0.22, C:0.35, G:0.00, T:0.43 Consensus pattern (6 bp): TTACCT Left flanking sequence: Indices 18381424 -- 18381923 ACTTCTACTACATGGTGGCCGCAATGGGACCCCAGTACCAGAAGTACCTGTGGTGGAAGAAGTAC ATGACCAGCATCCAGCTGATCCAGTTCGTCCTCATCCTGGGCTACATGCTGACCGTGGGCGCCAA GGGCTGCAACATGCCCAAGACACTGACCTTCTTCTTCGTGGGCAACACGGTCATCTTCCTTTACC TGTTCGGCAATTTCTATCGCAAGACCTACAAGAAGGCCAAGTCCGTGGATGGAGGCAGTCGCACC ACCGGCAGTAGTTTGGCTCAATCCGCTCTGCGTGCCGCCGGCGGTATGGGTTGCATGCCGCAGAC CATGAACGCCGGTAAGCATCTGCTCCAGAATGGCCAGGTCGGAAAGGCGTACATCGATCTGAACA ACAACAGCGTGAAGCCCATGAAGCTGGAATGATCGGCGATGCCGAAAATGGTGTCGTTGGGATTT CAGTTAGCAATTATGTTTTTTAGAGCGGGGCTTAGTTCGTAACTC Right flanking sequence: Indices 18381947 -- 18382446 AACTATCAGTAGTCTGTAGTCTGCGGAGAATAACTTGTATAATGTTTATATGCCGGGCAGGCGGA TGATGATTCAAATCCAAAAAGTAGCTAGGACCCTAAGTGCGTGAATGTGGCCATGTTTGTGTGAC TGAGTATGTGTTAATGTTTTTCTAGCTGAGCGTGTATGAGAGCTAGTGTGATAGAGCTTATTAAT GAAATGCAGCCGTAAATCGTTTCGCAAAACAAGAAAAATTCAATAAAACTTTAATTTTGTATATT TAATAAAACCAAAAAAGTCTGTGTCTGTTCTTTGCCGGTGAAATTCGGGTTCAGGTTTTGGGTTT TGGGGGTTTTTGGACTTCTATTTCTGCGCGAAGCTCTTGGGTTAGGTAATCAAACCGGATCCCAT TGGATCCTATTATTTATGACAACGGCATGGCCACGCGCTCCATCCACACGCAAAGAAAAATTATG CAGATCTGCAAACCATTAAACGTGATTAATATCTGTCGATTGAGT Found at i:18383026 original size:6 final size:6 Alignment explanation
Indices: 18383015--18383027 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 18383005 AACGCCGGAG 18383015 ATCTTC ATCTTC A 1 ATCTTC ATCTTC A 18383028 ATCGAAAGTC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.23, C:0.31, G:0.00, T:0.46 Consensus pattern (6 bp): ATCTTC Left flanking sequence: Indices 18382515 -- 18383014 AAGCACAAATTTTTGCATCCCTAAAAAACGATTCTTTAAATAAACCATATTTTTATGAGTGTAGA ACCTAGTACGCGTGCTGCGATGATTATCCAACATTGTGTGTGCCCCGTCCATTTTGTTGGCCAGG CTTAGACACCCTGGCGACGATTGGAGAATGTCTTTGCCAAATTAGAATTTCTAATCAATTTTTTC TTAACTCGCCTTGACTCACACACATGCCTCCAGCATCACATGAAGCACCTTTATTTATGCAGATT TCGAGTATAAAACTCTTGTTGTTTTGTACACATTCGAGTCAAAGTTCAAGGGCCTGGAAAAGAGT TTGATTTGTATCTATGGGTAGGCGTGTTATTTTAAATGAGCCTCGTTTTTGCGACATTTGCATAG GTCAAACTCTATGTTGGTTTTAAAACTAAGAACGGCCTGAAAGTATGCCTTGAATTGTGATTATG GAAATTTTTTCCAGTTTCTTGGTAAATATATAAATAACGCCGGAG Right flanking sequence: Indices 18383028 -- 18383527 ATCGAAAGTCTGATAGAATCTATGCTGATCAGACCATAAAACTGGTATAATATTGGCATTAGCTT AGCTCCGGTTGGGGCCAGATAAAAACCGAAATTTTTGGCTGAGAGCTGCGCTTTGTTTTCTCATG TTTGTGGTCAAGATCAAGGCCAAGTGTCCAAACCGGCTTTATTGAATACTGTATCCGCACATCGG ATGGCCGCAACCCCACTCGAAGATGCGTTTTCACTTCCGCTTCAGTTGCGTTCCGTCTTGACTGA TTGATCAATAAAAGGCTGCGGAATTTATCAAAATCTTATCTCCTCCGTCGCCGCCGTTCAAGGTG CCTGCGAAATGAGCTCTAATGAGTGGCCAAGTGGTCGTCTTTCCAGAGTCTCGTAAAAATTCATG AACCGATCGTGTCCAGATCATCACCCCATAGACCAGTTGTACTAGCCACGCCCATTCAAATTTAA ATCATTTTGGCTTCCGCTGCTGAATGAATAGGTTCTTGGTTATAC Found at i:18384331 original size:6 final size:6 Alignment explanation
Indices: 18384320--18384333 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 18384310 CTTAACTTAG 18384320 TTCAGT TTCAGT TT 1 TTCAGT TTCAGT TT 18384334 TGGCCGAAAG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.14, C:0.14, G:0.14, T:0.57 Consensus pattern (6 bp): TTCAGT Left flanking sequence: Indices 18383820 -- 18384319 TCATTTAAAAGTATAATATATTATTGCGTCAAAAGGAAAAAACTTTTAAATGTATTGAAAACAAG ATCATTCAAACTATAAAGAAATAGTATGGGGTACATGATCCTGATAAAGTGATCTATTAATTAAA AATGTCAGACTTTTTTGACAAATATACGATACATAAAAACAGATTTATATGAAAAATTCCCATAA AAGCAAAGTTGAGATCTTTTTCAGTATATTGACACTAGGAGTGTCAGTTCTCACTTCCGTTAATT TCCCATTCATAAGATAAAGAATAAGGCTCATTGTTTTTTTACGATATTTTTGTAGAAAAAATTCT AGATTTATTTGTAAATTGTGTTTGTATTTATGGTTTCGTTATTAGCTAGTTTTTCACTTGTTTAA TGCCTACTTTACATACCACACGTATATAAAATCTAAAGAAAACACATTCGCATGCGTACCTACAC TTATTTACACAACTAACGCTTCTTCTGCCTGTTTACTTAACTTAG Right flanking sequence: Indices 18384334 -- 18384833 TGGCCGAAAGACATACGACTTCTTTCATTTGGGTCCGCCCGACACGATGGCGAACTTCAAACGGA GCGAGCGATGATGATGACGATGGCGGCAAAAAGCAATTTCAACTGTTTGAACATTTACATTTACA TTTACATAATATGTGTATCTGTGTCTCGAAAACCTCATTTGCTCAAATATCTATTCGTCTCGTTT CTGATTTTCTTTTTTTTTTCGTGCTTCACGTCTATTTGGCGGCGGATTACTTAAGAAATTAGTCA ACAAGGTTGCACATAGAACATGGGTGGCTCTCAGTGGGTGTTTCTACCCGCCCTTTTGTACGAGT ATTGAAGGGGTTTTGTGTGTTGAGGGTGGTGTGTGTGGGTGGGTGGCGGTGGGTGTTTGTGCTCC TCCCTCTTACAAGGCCTTCTGCTTCTCCTGCTGCAGCTGAATTGCCTTGTTGAGGTCCTTGGCAC ATCCATCATTATTGTTATCCGCCGACAGAGCCTTCTCCTTGGCAG Found at i:18384413 original size:3 final size:3 Alignment explanation
Indices: 18384405--18384420 Score: 25 Period size: 3 Copynumber: 5.3 Consensus size: 3 18384395 CGGAGCGAGC * 18384405 GAT GAT GAT GAC GAT G 1 GAT GAT GAT GAT GAT G 18384421 GCGGCAAAAA Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 3 11 1.00 ACGTcount: A:0.31, C:0.06, G:0.38, T:0.25 Consensus pattern (3 bp): GAT Left flanking sequence: Indices 18383905 -- 18384404 ATAGTATGGGGTACATGATCCTGATAAAGTGATCTATTAATTAAAAATGTCAGACTTTTTTGACA AATATACGATACATAAAAACAGATTTATATGAAAAATTCCCATAAAAGCAAAGTTGAGATCTTTT TCAGTATATTGACACTAGGAGTGTCAGTTCTCACTTCCGTTAATTTCCCATTCATAAGATAAAGA ATAAGGCTCATTGTTTTTTTACGATATTTTTGTAGAAAAAATTCTAGATTTATTTGTAAATTGTG TTTGTATTTATGGTTTCGTTATTAGCTAGTTTTTCACTTGTTTAATGCCTACTTTACATACCACA CGTATATAAAATCTAAAGAAAACACATTCGCATGCGTACCTACACTTATTTACACAACTAACGCT TCTTCTGCCTGTTTACTTAACTTAGTTCAGTTTCAGTTTTGGCCGAAAGACATACGACTTCTTTC ATTTGGGTCCGCCCGACACGATGGCGAACTTCAAACGGAGCGAGC Right flanking sequence: Indices 18384421 -- 18384920 GCGGCAAAAAGCAATTTCAACTGTTTGAACATTTACATTTACATTTACATAATATGTGTATCTGT GTCTCGAAAACCTCATTTGCTCAAATATCTATTCGTCTCGTTTCTGATTTTCTTTTTTTTTTCGT GCTTCACGTCTATTTGGCGGCGGATTACTTAAGAAATTAGTCAACAAGGTTGCACATAGAACATG GGTGGCTCTCAGTGGGTGTTTCTACCCGCCCTTTTGTACGAGTATTGAAGGGGTTTTGTGTGTTG AGGGTGGTGTGTGTGGGTGGGTGGCGGTGGGTGTTTGTGCTCCTCCCTCTTACAAGGCCTTCTGC TTCTCCTGCTGCAGCTGAATTGCCTTGTTGAGGTCCTTGGCACATCCATCATTATTGTTATCCGC CGACAGAGCCTTCTCCTTGGCAGCAGCCTGCTTCTTCTTGTAGGACTTCTGGTAGAAGTCGTTGA ACAGGAAGTAGAAGAACACCGCGTTGGGCAGGGTAAAGCACACCG Found at i:18384460 original size:6 final size:6 Alignment explanation
Indices: 18384449--18384470 Score: 44 Period size: 6 Copynumber: 3.7 Consensus size: 6 18384439 AACTGTTTGA 18384449 ACATTT ACATTT ACATTT ACAT 1 ACATTT ACATTT ACATTT ACAT 18384471 AATATGTGTA Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 16 1.00 ACGTcount: A:0.36, C:0.18, G:0.00, T:0.45 Consensus pattern (6 bp): ACATTT Left flanking sequence: Indices 18383949 -- 18384448 AAATGTCAGACTTTTTTGACAAATATACGATACATAAAAACAGATTTATATGAAAAATTCCCATA AAAGCAAAGTTGAGATCTTTTTCAGTATATTGACACTAGGAGTGTCAGTTCTCACTTCCGTTAAT TTCCCATTCATAAGATAAAGAATAAGGCTCATTGTTTTTTTACGATATTTTTGTAGAAAAAATTC TAGATTTATTTGTAAATTGTGTTTGTATTTATGGTTTCGTTATTAGCTAGTTTTTCACTTGTTTA ATGCCTACTTTACATACCACACGTATATAAAATCTAAAGAAAACACATTCGCATGCGTACCTACA CTTATTTACACAACTAACGCTTCTTCTGCCTGTTTACTTAACTTAGTTCAGTTTCAGTTTTGGCC GAAAGACATACGACTTCTTTCATTTGGGTCCGCCCGACACGATGGCGAACTTCAAACGGAGCGAG CGATGATGATGACGATGGCGGCAAAAAGCAATTTCAACTGTTTGA Right flanking sequence: Indices 18384471 -- 18384970 AATATGTGTATCTGTGTCTCGAAAACCTCATTTGCTCAAATATCTATTCGTCTCGTTTCTGATTT TCTTTTTTTTTTCGTGCTTCACGTCTATTTGGCGGCGGATTACTTAAGAAATTAGTCAACAAGGT TGCACATAGAACATGGGTGGCTCTCAGTGGGTGTTTCTACCCGCCCTTTTGTACGAGTATTGAAG GGGTTTTGTGTGTTGAGGGTGGTGTGTGTGGGTGGGTGGCGGTGGGTGTTTGTGCTCCTCCCTCT TACAAGGCCTTCTGCTTCTCCTGCTGCAGCTGAATTGCCTTGTTGAGGTCCTTGGCACATCCATC ATTATTGTTATCCGCCGACAGAGCCTTCTCCTTGGCAGCAGCCTGCTTCTTCTTGTAGGACTTCT GGTAGAAGTCGTTGAACAGGAAGTAGAAGAACACCGCGTTGGGCAGGGTAAAGCACACCGACCAC CTGGGATACCCACAATCCGTGTACAACAGCTGCGTCTGGTGGATG Found at i:18384713 original size:4 final size:4 Alignment explanation
Indices: 18384682--18384704 Score: 30 Period size: 4 Copynumber: 5.5 Consensus size: 4 18384672 TGTGTGTTGA * 18384682 GGGT GGTGT GTGT GGGT GGGT GG 1 GGGT GG-GT GGGT GGGT GGGT GG 18384705 CGGTGGGTGT Statistics Matches: 16, Mismatches: 2, Indels: 2 0.80 0.10 0.10 Matches are distributed among these distances: 4 13 0.81 5 3 0.19 ACGTcount: A:0.00, C:0.00, G:0.70, T:0.30 Consensus pattern (4 bp): GGGT Left flanking sequence: Indices 18384182 -- 18384681 GTTATTAGCTAGTTTTTCACTTGTTTAATGCCTACTTTACATACCACACGTATATAAAATCTAAA GAAAACACATTCGCATGCGTACCTACACTTATTTACACAACTAACGCTTCTTCTGCCTGTTTACT TAACTTAGTTCAGTTTCAGTTTTGGCCGAAAGACATACGACTTCTTTCATTTGGGTCCGCCCGAC ACGATGGCGAACTTCAAACGGAGCGAGCGATGATGATGACGATGGCGGCAAAAAGCAATTTCAAC TGTTTGAACATTTACATTTACATTTACATAATATGTGTATCTGTGTCTCGAAAACCTCATTTGCT CAAATATCTATTCGTCTCGTTTCTGATTTTCTTTTTTTTTTCGTGCTTCACGTCTATTTGGCGGC GGATTACTTAAGAAATTAGTCAACAAGGTTGCACATAGAACATGGGTGGCTCTCAGTGGGTGTTT CTACCCGCCCTTTTGTACGAGTATTGAAGGGGTTTTGTGTGTTGA Right flanking sequence: Indices 18384705 -- 18385204 CGGTGGGTGTTTGTGCTCCTCCCTCTTACAAGGCCTTCTGCTTCTCCTGCTGCAGCTGAATTGCC TTGTTGAGGTCCTTGGCACATCCATCATTATTGTTATCCGCCGACAGAGCCTTCTCCTTGGCAGC AGCCTGCTTCTTCTTGTAGGACTTCTGGTAGAAGTCGTTGAACAGGAAGTAGAAGAACACCGCGT TGGGCAGGGTAAAGCACACCGACCACCTGGGATACCCACAATCCGTGTACAACAGCTGCGTCTGG TGGATGAAGGCGCAGCAGAACTGGATCTGTAAGAATAATCGTAAAATCGGGAGACCATTAAGAGC TATCGATAAGGAAGAATGAGGTGCTATCTATTTCTGAATCTATCTGTTTTGTACTTATACTAATC TAGATAATTTTAAAATGAAATGGTTGTAGAGCTCTAGTATCTCACAACAAAATAAAACTATATAT CACTTTTAAGTGCAGCCCTAAAATCAAAGAATACATTTGAATATT Found at i:18386230 original size:5 final size:5 Alignment explanation
Indices: 18386216--18386231 Score: 25 Period size: 5 Copynumber: 3.2 Consensus size: 5 18386206 GAGTTTTCGT * 18386216 AGTTA AGTTA TGTTA A 1 AGTTA AGTTA AGTTA A 18386232 TGCGATTCTC Statistics Matches: 9, Mismatches: 2, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 5 9 1.00 ACGTcount: A:0.38, C:0.00, G:0.19, T:0.44 Consensus pattern (5 bp): AGTTA Left flanking sequence: Indices 18385716 -- 18386215 CATCCAAACACTGAGGGCTACCTGGAAGAAATTGTAGACGAGCAGGGTGCGTTCCAGCTTGAAGG GTTTGCGATCCTTCATGAACTTGGGTCCCCAGGACAGCACGAAGAAGAGATAGAAGGCCAGGATG CCCAGCAGGGGCAGTGGCGACTTGATCAGGAACCAGTCATTGGTGCGGGGATCTGCGTGGGAATA TCAGGGATTTGATCAGCATCTATATGCGGCACAGGTAGTTCCCCTCCCCATCCAACTCACCTGCC AGATCGGTGAACAGAAAATTCCAATAGTCCACCTGTGTTGCGTTGACGGCTGCCATTTTTAAATT CTCCTCGTTGGACTCTTGCTCCCACAAATACGATTATATAGCGACGATCGTTTCGATGTGAAATT CAAAAATCTGCTTAGCCTGCGTCGCAACGAACGAGTTTTGCGAAATCTAAATGGAATTGGGAAGA TCGGAAGGGAGTCTGGATGAGGGAAAGATCTTTTCGAGTTTTCGT Right flanking sequence: Indices 18386232 -- 18386731 TGCGATTCTCGAGCAACTAATGCCAAAGCTATAGCTTCAGCTACAGCTTTTGCCATTGCTTTTGC TGTTGCTGTTGCCGAGCCCAGAAATCTAAATAAAATTAAAATAATAATCAAACGAAGGCGAAGGA GAATAGCAAATAGCAAATGTGTGACGGTGACGGTGAAATGCCGTGAAATTATCATGTAACAGTAA CAGTAAATTATATTCATTATTATGAATTAAACAACCGCAGCGCACAACAGCCCGCAACAAATTGG TGGCCACCTCAAAACTTCAACTCCATATGGCCCATACCATGGTTGGTTGGTTGCCTCACGACCCG AGATACAAGACCCAAGTAAATTGGGCAGTGCCTCAGTGCCTCACGTGTGGAACGCATAAAACCCA CTCGCACACCCAGCTAAATTATATTTGTGTTGTGCAGTTTGTTTGGTTTTGAGCTGTTGCTTGCC ACTCTCTTACGGATCTCGGGGATCTTCTACAGAAGTCGTTTAGTC Found at i:18386273 original size:6 final size:6 Alignment explanation
Indices: 18386264--18386280 Score: 27 Period size: 6 Copynumber: 2.8 Consensus size: 6 18386254 CCAAAGCTAT * 18386264 AGCTTC AGCTAC AGCTT 1 AGCTTC AGCTTC AGCTT 18386281 TTGCCATTGC Statistics Matches: 9, Mismatches: 2, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29 Consensus pattern (6 bp): AGCTTC Left flanking sequence: Indices 18385764 -- 18386263 GCGTTCCAGCTTGAAGGGTTTGCGATCCTTCATGAACTTGGGTCCCCAGGACAGCACGAAGAAGA GATAGAAGGCCAGGATGCCCAGCAGGGGCAGTGGCGACTTGATCAGGAACCAGTCATTGGTGCGG GGATCTGCGTGGGAATATCAGGGATTTGATCAGCATCTATATGCGGCACAGGTAGTTCCCCTCCC CATCCAACTCACCTGCCAGATCGGTGAACAGAAAATTCCAATAGTCCACCTGTGTTGCGTTGACG GCTGCCATTTTTAAATTCTCCTCGTTGGACTCTTGCTCCCACAAATACGATTATATAGCGACGAT CGTTTCGATGTGAAATTCAAAAATCTGCTTAGCCTGCGTCGCAACGAACGAGTTTTGCGAAATCT AAATGGAATTGGGAAGATCGGAAGGGAGTCTGGATGAGGGAAAGATCTTTTCGAGTTTTCGTAGT TAAGTTATGTTAATGCGATTCTCGAGCAACTAATGCCAAAGCTAT Right flanking sequence: Indices 18386281 -- 18386780 TTGCCATTGCTTTTGCTGTTGCTGTTGCCGAGCCCAGAAATCTAAATAAAATTAAAATAATAATC AAACGAAGGCGAAGGAGAATAGCAAATAGCAAATGTGTGACGGTGACGGTGAAATGCCGTGAAAT TATCATGTAACAGTAACAGTAAATTATATTCATTATTATGAATTAAACAACCGCAGCGCACAACA GCCCGCAACAAATTGGTGGCCACCTCAAAACTTCAACTCCATATGGCCCATACCATGGTTGGTTG GTTGCCTCACGACCCGAGATACAAGACCCAAGTAAATTGGGCAGTGCCTCAGTGCCTCACGTGTG GAACGCATAAAACCCACTCGCACACCCAGCTAAATTATATTTGTGTTGTGCAGTTTGTTTGGTTT TGAGCTGTTGCTTGCCACTCTCTTACGGATCTCGGGGATCTTCTACAGAAGTCGTTTAGTCCAAA GTGGGACAGAGTGAAGTGGTACTCCCGGTGATTAATCATCGCCAA Found at i:18386296 original size:6 final size:6 Alignment explanation
Indices: 18386287--18386308 Score: 37 Period size: 6 Copynumber: 3.7 Consensus size: 6 18386277 GCTTTTGCCA * 18386287 TTGCTT TTGCTG TTGCTG TTGC 1 TTGCTG TTGCTG TTGCTG TTGC 18386309 CGAGCCCAGA Statistics Matches: 15, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 6 15 1.00 ACGTcount: A:0.00, C:0.18, G:0.27, T:0.55 Consensus pattern (6 bp): TTGCTG Left flanking sequence: Indices 18385787 -- 18386286 GATCCTTCATGAACTTGGGTCCCCAGGACAGCACGAAGAAGAGATAGAAGGCCAGGATGCCCAGC AGGGGCAGTGGCGACTTGATCAGGAACCAGTCATTGGTGCGGGGATCTGCGTGGGAATATCAGGG ATTTGATCAGCATCTATATGCGGCACAGGTAGTTCCCCTCCCCATCCAACTCACCTGCCAGATCG GTGAACAGAAAATTCCAATAGTCCACCTGTGTTGCGTTGACGGCTGCCATTTTTAAATTCTCCTC GTTGGACTCTTGCTCCCACAAATACGATTATATAGCGACGATCGTTTCGATGTGAAATTCAAAAA TCTGCTTAGCCTGCGTCGCAACGAACGAGTTTTGCGAAATCTAAATGGAATTGGGAAGATCGGAA GGGAGTCTGGATGAGGGAAAGATCTTTTCGAGTTTTCGTAGTTAAGTTATGTTAATGCGATTCTC GAGCAACTAATGCCAAAGCTATAGCTTCAGCTACAGCTTTTGCCA Right flanking sequence: Indices 18386309 -- 18386808 CGAGCCCAGAAATCTAAATAAAATTAAAATAATAATCAAACGAAGGCGAAGGAGAATAGCAAATA GCAAATGTGTGACGGTGACGGTGAAATGCCGTGAAATTATCATGTAACAGTAACAGTAAATTATA TTCATTATTATGAATTAAACAACCGCAGCGCACAACAGCCCGCAACAAATTGGTGGCCACCTCAA AACTTCAACTCCATATGGCCCATACCATGGTTGGTTGGTTGCCTCACGACCCGAGATACAAGACC CAAGTAAATTGGGCAGTGCCTCAGTGCCTCACGTGTGGAACGCATAAAACCCACTCGCACACCCA GCTAAATTATATTTGTGTTGTGCAGTTTGTTTGGTTTTGAGCTGTTGCTTGCCACTCTCTTACGG ATCTCGGGGATCTTCTACAGAAGTCGTTTAGTCCAAAGTGGGACAGAGTGAAGTGGTACTCCCGG TGATTAATCATCGCCAAGAACTTGCTCCTCCAAAGGGGGCATTTG Found at i:18386360 original size:6 final size:6 Alignment explanation
Indices: 18386349--18386364 Score: 25 Period size: 6 Copynumber: 2.7 Consensus size: 6 18386339 AATAATCAAA * 18386349 CGAAGG CGAAGG AGAA 1 CGAAGG CGAAGG CGAA 18386365 TAGCAAATAG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.44, C:0.12, G:0.44, T:0.00 Consensus pattern (6 bp): CGAAGG Left flanking sequence: Indices 18385849 -- 18386348 AGCAGGGGCAGTGGCGACTTGATCAGGAACCAGTCATTGGTGCGGGGATCTGCGTGGGAATATCA GGGATTTGATCAGCATCTATATGCGGCACAGGTAGTTCCCCTCCCCATCCAACTCACCTGCCAGA TCGGTGAACAGAAAATTCCAATAGTCCACCTGTGTTGCGTTGACGGCTGCCATTTTTAAATTCTC CTCGTTGGACTCTTGCTCCCACAAATACGATTATATAGCGACGATCGTTTCGATGTGAAATTCAA AAATCTGCTTAGCCTGCGTCGCAACGAACGAGTTTTGCGAAATCTAAATGGAATTGGGAAGATCG GAAGGGAGTCTGGATGAGGGAAAGATCTTTTCGAGTTTTCGTAGTTAAGTTATGTTAATGCGATT CTCGAGCAACTAATGCCAAAGCTATAGCTTCAGCTACAGCTTTTGCCATTGCTTTTGCTGTTGCT GTTGCCGAGCCCAGAAATCTAAATAAAATTAAAATAATAATCAAA Right flanking sequence: Indices 18386365 -- 18386864 TAGCAAATAGCAAATGTGTGACGGTGACGGTGAAATGCCGTGAAATTATCATGTAACAGTAACAG TAAATTATATTCATTATTATGAATTAAACAACCGCAGCGCACAACAGCCCGCAACAAATTGGTGG CCACCTCAAAACTTCAACTCCATATGGCCCATACCATGGTTGGTTGGTTGCCTCACGACCCGAGA TACAAGACCCAAGTAAATTGGGCAGTGCCTCAGTGCCTCACGTGTGGAACGCATAAAACCCACTC GCACACCCAGCTAAATTATATTTGTGTTGTGCAGTTTGTTTGGTTTTGAGCTGTTGCTTGCCACT CTCTTACGGATCTCGGGGATCTTCTACAGAAGTCGTTTAGTCCAAAGTGGGACAGAGTGAAGTGG TACTCCCGGTGATTAATCATCGCCAAGAACTTGCTCCTCCAAAGGGGGCATTTGAGAACCATCGA GCTATCAAGCACCCATGCTAAATTCCAAGCATTCACGTTCGTTGA Found at i:18386393 original size:6 final size:6 Alignment explanation
Indices: 18386382--18386397 Score: 32 Period size: 6 Copynumber: 2.7 Consensus size: 6 18386372 TAGCAAATGT 18386382 GTGACG GTGACG GTGA 1 GTGACG GTGACG GTGA 18386398 AATGCCGTGA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.19, C:0.12, G:0.50, T:0.19 Consensus pattern (6 bp): GTGACG Left flanking sequence: Indices 18385882 -- 18386381 TCATTGGTGCGGGGATCTGCGTGGGAATATCAGGGATTTGATCAGCATCTATATGCGGCACAGGT AGTTCCCCTCCCCATCCAACTCACCTGCCAGATCGGTGAACAGAAAATTCCAATAGTCCACCTGT GTTGCGTTGACGGCTGCCATTTTTAAATTCTCCTCGTTGGACTCTTGCTCCCACAAATACGATTA TATAGCGACGATCGTTTCGATGTGAAATTCAAAAATCTGCTTAGCCTGCGTCGCAACGAACGAGT TTTGCGAAATCTAAATGGAATTGGGAAGATCGGAAGGGAGTCTGGATGAGGGAAAGATCTTTTCG AGTTTTCGTAGTTAAGTTATGTTAATGCGATTCTCGAGCAACTAATGCCAAAGCTATAGCTTCAG CTACAGCTTTTGCCATTGCTTTTGCTGTTGCTGTTGCCGAGCCCAGAAATCTAAATAAAATTAAA ATAATAATCAAACGAAGGCGAAGGAGAATAGCAAATAGCAAATGT Right flanking sequence: Indices 18386398 -- 18386897 AATGCCGTGAAATTATCATGTAACAGTAACAGTAAATTATATTCATTATTATGAATTAAACAACC GCAGCGCACAACAGCCCGCAACAAATTGGTGGCCACCTCAAAACTTCAACTCCATATGGCCCATA CCATGGTTGGTTGGTTGCCTCACGACCCGAGATACAAGACCCAAGTAAATTGGGCAGTGCCTCAG TGCCTCACGTGTGGAACGCATAAAACCCACTCGCACACCCAGCTAAATTATATTTGTGTTGTGCA GTTTGTTTGGTTTTGAGCTGTTGCTTGCCACTCTCTTACGGATCTCGGGGATCTTCTACAGAAGT CGTTTAGTCCAAAGTGGGACAGAGTGAAGTGGTACTCCCGGTGATTAATCATCGCCAAGAACTTG CTCCTCCAAAGGGGGCATTTGAGAACCATCGAGCTATCAAGCACCCATGCTAAATTCCAAGCATT CACGTTCGTTGACTTGAAGTCGACTCACACTTGAACTTGGCTAAG Found at i:18386428 original size:6 final size:6 Alignment explanation
Indices: 18386417--18386432 Score: 32 Period size: 6 Copynumber: 2.7 Consensus size: 6 18386407 AAATTATCAT 18386417 GTAACA GTAACA GTAA 1 GTAACA GTAACA GTAA 18386433 ATTATATTCA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.50, C:0.12, G:0.19, T:0.19 Consensus pattern (6 bp): GTAACA Left flanking sequence: Indices 18385917 -- 18386416 ATTTGATCAGCATCTATATGCGGCACAGGTAGTTCCCCTCCCCATCCAACTCACCTGCCAGATCG GTGAACAGAAAATTCCAATAGTCCACCTGTGTTGCGTTGACGGCTGCCATTTTTAAATTCTCCTC GTTGGACTCTTGCTCCCACAAATACGATTATATAGCGACGATCGTTTCGATGTGAAATTCAAAAA TCTGCTTAGCCTGCGTCGCAACGAACGAGTTTTGCGAAATCTAAATGGAATTGGGAAGATCGGAA GGGAGTCTGGATGAGGGAAAGATCTTTTCGAGTTTTCGTAGTTAAGTTATGTTAATGCGATTCTC GAGCAACTAATGCCAAAGCTATAGCTTCAGCTACAGCTTTTGCCATTGCTTTTGCTGTTGCTGTT GCCGAGCCCAGAAATCTAAATAAAATTAAAATAATAATCAAACGAAGGCGAAGGAGAATAGCAAA TAGCAAATGTGTGACGGTGACGGTGAAATGCCGTGAAATTATCAT Right flanking sequence: Indices 18386433 -- 18386932 ATTATATTCATTATTATGAATTAAACAACCGCAGCGCACAACAGCCCGCAACAAATTGGTGGCCA CCTCAAAACTTCAACTCCATATGGCCCATACCATGGTTGGTTGGTTGCCTCACGACCCGAGATAC AAGACCCAAGTAAATTGGGCAGTGCCTCAGTGCCTCACGTGTGGAACGCATAAAACCCACTCGCA CACCCAGCTAAATTATATTTGTGTTGTGCAGTTTGTTTGGTTTTGAGCTGTTGCTTGCCACTCTC TTACGGATCTCGGGGATCTTCTACAGAAGTCGTTTAGTCCAAAGTGGGACAGAGTGAAGTGGTAC TCCCGGTGATTAATCATCGCCAAGAACTTGCTCCTCCAAAGGGGGCATTTGAGAACCATCGAGCT ATCAAGCACCCATGCTAAATTCCAAGCATTCACGTTCGTTGACTTGAAGTCGACTCACACTTGAA CTTGGCTAAGGCCGATTAAGACCACAAAATAATCGAATAGCATTA Found at i:18386540 original size:4 final size:4 Alignment explanation
Indices: 18386531--18386544 Score: 28 Period size: 4 Copynumber: 3.5 Consensus size: 4 18386521 GCCCATACCA 18386531 TGGT TGGT TGGT TG 1 TGGT TGGT TGGT TG 18386545 CCTCACGACC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 10 1.00 ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50 Consensus pattern (4 bp): TGGT Left flanking sequence: Indices 18386031 -- 18386530 TTTTTAAATTCTCCTCGTTGGACTCTTGCTCCCACAAATACGATTATATAGCGACGATCGTTTCG ATGTGAAATTCAAAAATCTGCTTAGCCTGCGTCGCAACGAACGAGTTTTGCGAAATCTAAATGGA ATTGGGAAGATCGGAAGGGAGTCTGGATGAGGGAAAGATCTTTTCGAGTTTTCGTAGTTAAGTTA TGTTAATGCGATTCTCGAGCAACTAATGCCAAAGCTATAGCTTCAGCTACAGCTTTTGCCATTGC TTTTGCTGTTGCTGTTGCCGAGCCCAGAAATCTAAATAAAATTAAAATAATAATCAAACGAAGGC GAAGGAGAATAGCAAATAGCAAATGTGTGACGGTGACGGTGAAATGCCGTGAAATTATCATGTAA CAGTAACAGTAAATTATATTCATTATTATGAATTAAACAACCGCAGCGCACAACAGCCCGCAACA AATTGGTGGCCACCTCAAAACTTCAACTCCATATGGCCCATACCA Right flanking sequence: Indices 18386545 -- 18387044 CCTCACGACCCGAGATACAAGACCCAAGTAAATTGGGCAGTGCCTCAGTGCCTCACGTGTGGAAC GCATAAAACCCACTCGCACACCCAGCTAAATTATATTTGTGTTGTGCAGTTTGTTTGGTTTTGAG CTGTTGCTTGCCACTCTCTTACGGATCTCGGGGATCTTCTACAGAAGTCGTTTAGTCCAAAGTGG GACAGAGTGAAGTGGTACTCCCGGTGATTAATCATCGCCAAGAACTTGCTCCTCCAAAGGGGGCA TTTGAGAACCATCGAGCTATCAAGCACCCATGCTAAATTCCAAGCATTCACGTTCGTTGACTTGA AGTCGACTCACACTTGAACTTGGCTAAGGCCGATTAAGACCACAAAATAATCGAATAGCATTATG ATTTCTTGCGTCGTTTTCGAGGCTATTCTGATCGGCTTCTTGGTCTGCGAAGTGAGGAACAAATT GAAATAAAAAAAAAAACGACTGAGGAGATATTTTGAAGGGCAACT Found at i:18388015 original size:2 final size:2 Alignment explanation
Indices: 18388010--18388032 Score: 25 Period size: 2 Copynumber: 11.5 Consensus size: 2 18388000 AGATATATCT ** * 18388010 AC AC AC AC AC AC TG GC AC AC AC A 1 AC AC AC AC AC AC AC AC AC AC AC A 18388033 GATGAAGCGG Statistics Matches: 16, Mismatches: 5, Indels: 0 0.76 0.24 0.00 Matches are distributed among these distances: 2 16 1.00 ACGTcount: A:0.43, C:0.43, G:0.09, T:0.04 Consensus pattern (2 bp): AC Left flanking sequence: Indices 18387510 -- 18388009 AGAAAATTGTGTCACCTATTGCCCAATTTGGACGACGGCGGTTTTGTTTTTGCCAAAATCAAATA TGTGTCGCATTGGTTTAATGACCTTGACAGGTGGAGATCGCTAAACTCCTCATATGGCACTTGTT CTATGCAAAAAAAAAAAGTTTGCTGATCTAAGCTAAATATTAGGCATGGAAGTGAAAGATACAAA ATATGAAGTATCATCTACTTGTGCTTCTAAGCAAATTTTAGAAAGATGTAAACACAAGCGTATCC TTGCTCATCTTTACTAGCCTTTTAAGTGTTGAAATACTTTGTTGATTTTTAAGGATATGTACCCT AACTATTGAAATGCACAAACTTTATAAACCTTTCCTTGTCAGCTGATCTGTCGATTGAATAGCTA CAGAACTTCACTTTCAGGGACCTCTACCAGCGTATCAATCCAGTCTAAGCCACGAATTCTATAAC TGCTCGCCTCCAACGATTGATCTGATTGATCACTCAGATATATCT Right flanking sequence: Indices 18388033 -- 18388532 GATGAAGCGGTTTGTTGGGCACCTGTTGCAATCTCTTCGATTGCCGTGCACTTAATTTTGAGCGA CGACAACTTAATGTTAGCACCGTGACAACTGTTTTTTAGTCTTGTTCCATCTTTAGTCTTGCTCA AATGAGGCTGATATGAGGCACTATGTGGTGTGGTGTGGTATAGTATAGTTTAGTATGGTATATTA TTGTATAGTGGGGAGATACCTTTGCTGGCATCCGCTACCCACGAGACTTGTACGCGCACTGAACT GCTCCGCCGAGTTGTACGGCGCTATGTATAAAAATTTCGACTAAAGGTTCGATTTGGCACTGCTG TTTCTTCGTCTCTGCCTTCCGATTTGTTTTTGTATCTGTATCTGTTTCTGTATCTGTATTCAGTT CATCTTCAGTTCGGCGTTTAGATTCAGCTTTAGTTTTTGTTTAGCCGAACTTTTGTCTCGGCTAT TTGGCATCTTGCTCATCCTCATCTTTGACTTTAGCTTTAGCTTTA Found at i:18388196 original size:5 final size:5 Alignment explanation
Indices: 18388186--18388201 Score: 32 Period size: 5 Copynumber: 3.2 Consensus size: 5 18388176 TGAGGCACTA 18388186 TGTGG TGTGG TGTGG T 1 TGTGG TGTGG TGTGG T 18388202 ATAGTATAGT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 11 1.00 ACGTcount: A:0.00, C:0.00, G:0.56, T:0.44 Consensus pattern (5 bp): TGTGG Left flanking sequence: Indices 18387686 -- 18388185 TGGAAGTGAAAGATACAAAATATGAAGTATCATCTACTTGTGCTTCTAAGCAAATTTTAGAAAGA TGTAAACACAAGCGTATCCTTGCTCATCTTTACTAGCCTTTTAAGTGTTGAAATACTTTGTTGAT TTTTAAGGATATGTACCCTAACTATTGAAATGCACAAACTTTATAAACCTTTCCTTGTCAGCTGA TCTGTCGATTGAATAGCTACAGAACTTCACTTTCAGGGACCTCTACCAGCGTATCAATCCAGTCT AAGCCACGAATTCTATAACTGCTCGCCTCCAACGATTGATCTGATTGATCACTCAGATATATCTA CACACACACACTGGCACACACAGATGAAGCGGTTTGTTGGGCACCTGTTGCAATCTCTTCGATTG CCGTGCACTTAATTTTGAGCGACGACAACTTAATGTTAGCACCGTGACAACTGTTTTTTAGTCTT GTTCCATCTTTAGTCTTGCTCAAATGAGGCTGATATGAGGCACTA Right flanking sequence: Indices 18388202 -- 18388701 ATAGTATAGTTTAGTATGGTATATTATTGTATAGTGGGGAGATACCTTTGCTGGCATCCGCTACC CACGAGACTTGTACGCGCACTGAACTGCTCCGCCGAGTTGTACGGCGCTATGTATAAAAATTTCG ACTAAAGGTTCGATTTGGCACTGCTGTTTCTTCGTCTCTGCCTTCCGATTTGTTTTTGTATCTGT ATCTGTTTCTGTATCTGTATTCAGTTCATCTTCAGTTCGGCGTTTAGATTCAGCTTTAGTTTTTG TTTAGCCGAACTTTTGTCTCGGCTATTTGGCATCTTGCTCATCCTCATCTTTGACTTTAGCTTTA GCTTTAAGATGTTCTTTTGTGCCTCGTGGATTCCAAACGCTATATGCTATATGCTACATACACAA AATGTATCGAATGGTCTCGTATGGTCTCGTTTTTCTATGATAATTGCGATAACAATGTTGGTGTT GTGTGTGCGTGTTGCCGGCTTTTTGTTGCTGTTGTTGGCCAAAAT Found at i:18388208 original size:5 final size:5 Alignment explanation
Indices: 18388200--18388236 Score: 46 Period size: 5 Copynumber: 7.4 Consensus size: 5 18388190 GTGTGGTGTG * * * * 18388200 GTATA GTATA GTTTA GTATG GTATA TTATT GTATA GT 1 GTATA GTATA GTATA GTATA GTATA GTATA GTATA GT 18388237 GGGGAGATAC Statistics Matches: 24, Mismatches: 8, Indels: 0 0.75 0.25 0.00 Matches are distributed among these distances: 5 24 1.00 ACGTcount: A:0.30, C:0.00, G:0.22, T:0.49 Consensus pattern (5 bp): GTATA Left flanking sequence: Indices 18387700 -- 18388199 ACAAAATATGAAGTATCATCTACTTGTGCTTCTAAGCAAATTTTAGAAAGATGTAAACACAAGCG TATCCTTGCTCATCTTTACTAGCCTTTTAAGTGTTGAAATACTTTGTTGATTTTTAAGGATATGT ACCCTAACTATTGAAATGCACAAACTTTATAAACCTTTCCTTGTCAGCTGATCTGTCGATTGAAT AGCTACAGAACTTCACTTTCAGGGACCTCTACCAGCGTATCAATCCAGTCTAAGCCACGAATTCT ATAACTGCTCGCCTCCAACGATTGATCTGATTGATCACTCAGATATATCTACACACACACACTGG CACACACAGATGAAGCGGTTTGTTGGGCACCTGTTGCAATCTCTTCGATTGCCGTGCACTTAATT TTGAGCGACGACAACTTAATGTTAGCACCGTGACAACTGTTTTTTAGTCTTGTTCCATCTTTAGT CTTGCTCAAATGAGGCTGATATGAGGCACTATGTGGTGTGGTGTG Right flanking sequence: Indices 18388237 -- 18388736 GGGGAGATACCTTTGCTGGCATCCGCTACCCACGAGACTTGTACGCGCACTGAACTGCTCCGCCG AGTTGTACGGCGCTATGTATAAAAATTTCGACTAAAGGTTCGATTTGGCACTGCTGTTTCTTCGT CTCTGCCTTCCGATTTGTTTTTGTATCTGTATCTGTTTCTGTATCTGTATTCAGTTCATCTTCAG TTCGGCGTTTAGATTCAGCTTTAGTTTTTGTTTAGCCGAACTTTTGTCTCGGCTATTTGGCATCT TGCTCATCCTCATCTTTGACTTTAGCTTTAGCTTTAAGATGTTCTTTTGTGCCTCGTGGATTCCA AACGCTATATGCTATATGCTACATACACAAAATGTATCGAATGGTCTCGTATGGTCTCGTTTTTC TATGATAATTGCGATAACAATGTTGGTGTTGTGTGTGCGTGTTGCCGGCTTTTTGTTGCTGTTGT TGGCCAAAATCGTCTGGCTTTTAATTCGTTTTGTATTTGGTTGTG Found at i:18388397 original size:6 final size:6 Alignment explanation
Indices: 18388388--18388416 Score: 51 Period size: 6 Copynumber: 4.8 Consensus size: 6 18388378 GATTTGTTTT * 18388388 TGTATC TGTATC TGTTTC TGTATC TGTAT 1 TGTATC TGTATC TGTATC TGTATC TGTAT 18388417 TCAGTTCATC Statistics Matches: 21, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 6 21 1.00 ACGTcount: A:0.14, C:0.14, G:0.17, T:0.55 Consensus pattern (6 bp): TGTATC Left flanking sequence: Indices 18387888 -- 18388387 ATTGAATAGCTACAGAACTTCACTTTCAGGGACCTCTACCAGCGTATCAATCCAGTCTAAGCCAC GAATTCTATAACTGCTCGCCTCCAACGATTGATCTGATTGATCACTCAGATATATCTACACACAC ACACTGGCACACACAGATGAAGCGGTTTGTTGGGCACCTGTTGCAATCTCTTCGATTGCCGTGCA CTTAATTTTGAGCGACGACAACTTAATGTTAGCACCGTGACAACTGTTTTTTAGTCTTGTTCCAT CTTTAGTCTTGCTCAAATGAGGCTGATATGAGGCACTATGTGGTGTGGTGTGGTATAGTATAGTT TAGTATGGTATATTATTGTATAGTGGGGAGATACCTTTGCTGGCATCCGCTACCCACGAGACTTG TACGCGCACTGAACTGCTCCGCCGAGTTGTACGGCGCTATGTATAAAAATTTCGACTAAAGGTTC GATTTGGCACTGCTGTTTCTTCGTCTCTGCCTTCCGATTTGTTTT Right flanking sequence: Indices 18388417 -- 18388916 TCAGTTCATCTTCAGTTCGGCGTTTAGATTCAGCTTTAGTTTTTGTTTAGCCGAACTTTTGTCTC GGCTATTTGGCATCTTGCTCATCCTCATCTTTGACTTTAGCTTTAGCTTTAAGATGTTCTTTTGT GCCTCGTGGATTCCAAACGCTATATGCTATATGCTACATACACAAAATGTATCGAATGGTCTCGT ATGGTCTCGTTTTTCTATGATAATTGCGATAACAATGTTGGTGTTGTGTGTGCGTGTTGCCGGCT TTTTGTTGCTGTTGTTGGCCAAAATCGTCTGGCTTTTAATTCGTTTTGTATTTGGTTGTGCAGCC TTTTGTACAATTAAAAGAATCATAAAATATTCTTGAATAGTTGTCACTTTTGATCGATTTGGTCA AAGCGATTGCGGTAGAACTTAGAGGATAGCGAATTTATGGCATTGAGCGTGCTTCCAGAAATTTG AATAACAAGACCTAATAAACAGAAAATTCATTTAAACATTTGCAA Found at i:18388525 original size:6 final size:6 Alignment explanation
Indices: 18388516--18388532 Score: 34 Period size: 6 Copynumber: 2.8 Consensus size: 6 18388506 TCATCTTTGA 18388516 CTTTAG CTTTAG CTTTA 1 CTTTAG CTTTAG CTTTA 18388533 AGATGTTCTT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 11 1.00 ACGTcount: A:0.18, C:0.18, G:0.12, T:0.53 Consensus pattern (6 bp): CTTTAG Left flanking sequence: Indices 18388016 -- 18388515 ACACACTGGCACACACAGATGAAGCGGTTTGTTGGGCACCTGTTGCAATCTCTTCGATTGCCGTG CACTTAATTTTGAGCGACGACAACTTAATGTTAGCACCGTGACAACTGTTTTTTAGTCTTGTTCC ATCTTTAGTCTTGCTCAAATGAGGCTGATATGAGGCACTATGTGGTGTGGTGTGGTATAGTATAG TTTAGTATGGTATATTATTGTATAGTGGGGAGATACCTTTGCTGGCATCCGCTACCCACGAGACT TGTACGCGCACTGAACTGCTCCGCCGAGTTGTACGGCGCTATGTATAAAAATTTCGACTAAAGGT TCGATTTGGCACTGCTGTTTCTTCGTCTCTGCCTTCCGATTTGTTTTTGTATCTGTATCTGTTTC TGTATCTGTATTCAGTTCATCTTCAGTTCGGCGTTTAGATTCAGCTTTAGTTTTTGTTTAGCCGA ACTTTTGTCTCGGCTATTTGGCATCTTGCTCATCCTCATCTTTGA Right flanking sequence: Indices 18388533 -- 18389032 AGATGTTCTTTTGTGCCTCGTGGATTCCAAACGCTATATGCTATATGCTACATACACAAAATGTA TCGAATGGTCTCGTATGGTCTCGTTTTTCTATGATAATTGCGATAACAATGTTGGTGTTGTGTGT GCGTGTTGCCGGCTTTTTGTTGCTGTTGTTGGCCAAAATCGTCTGGCTTTTAATTCGTTTTGTAT TTGGTTGTGCAGCCTTTTGTACAATTAAAAGAATCATAAAATATTCTTGAATAGTTGTCACTTTT GATCGATTTGGTCAAAGCGATTGCGGTAGAACTTAGAGGATAGCGAATTTATGGCATTGAGCGTG CTTCCAGAAATTTGAATAACAAGACCTAATAAACAGAAAATTCATTTAAACATTTGCAAAGTAAA ATGTTTTTATTTTAGAAAACACAGCCAATCCCAGCGGACAACTCTGATTAGTTTGCTAATAACAA ACAGAAACTAACATTCTATCAAATGAGAATATATTCTACATATAC Found at i:18389344 original size:5 final size:5 Alignment explanation
Indices: 18389336--18389352 Score: 34 Period size: 5 Copynumber: 3.4 Consensus size: 5 18389326 AACCTAACCC 18389336 AACTG AACTG AACTG AA 1 AACTG AACTG AACTG AA 18389353 ACTGCGTAGG Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 12 1.00 ACGTcount: A:0.47, C:0.18, G:0.18, T:0.18 Consensus pattern (5 bp): AACTG Left flanking sequence: Indices 18388836 -- 18389335 CGAATTTATGGCATTGAGCGTGCTTCCAGAAATTTGAATAACAAGACCTAATAAACAGAAAATTC ATTTAAACATTTGCAAAGTAAAATGTTTTTATTTTAGAAAACACAGCCAATCCCAGCGGACAACT CTGATTAGTTTGCTAATAACAAACAGAAACTAACATTCTATCAAATGAGAATATATTCTACATAT ACGTATGTGTACCCTAATGATACTTTCATTTTCTCTCAATTAATAGCTTTTTAAACAACATTCAG TCATTATAGAGTATTATTTATCCATTCCCTTAGGCTCTTTCATCATTAGCCAGAATATGACAACA AACCCTAGAAATAGTCTCAAATCGCCTCAGAATGAAATGTTCATTCTATTTTGTTTTCGGTTTCT GGTAATTCTCCCTTTTTTTATATCTTCATCCAAATTCGCTTTCGTAACCTTGACCCACTTGAAAT ACTTATTCACGCTTTAACTCCAGTATGAACTTTAGAACCTAACCC Right flanking sequence: Indices 18389353 -- 18389852 ACTGCGTAGGTGGTTTATAATTTCGTTGACCTTTTTTTTTGGCGAATCAGCGAAATTCCCTAGAC TGTTTTACAAGCAATTTGAAAACTATTTAAAACAAGCCTAAAACATTGCTATTATCGGCATAAAG CGGAAAGGTTTACAGCCAGAAGTATTTCGTTAAAAGTGTTTGTAAAGTTTATTCAAGGAAACGGC GCATTTACCTGGCAATTTACATACAAATTCTTTGGGCCCAGGGCTCGGAATCAGATTCGGAATCG GATTCTAACGACCCACAATGATCGCAGCGCATCGATTAAGGCCCACTTCCGGGTCAAGTTAATGA AACCAAACCGATAGCAACTATTTTGGCCAAGACTTCGAACTTCGATGTCTGAGAAAAAAAAAAAC AGAGGCTGAGGCTGGGGTCACCGAAATGTTAACTGTGTCACCGGCGAATTGAACTTGAACTTGCC GATTAGCTTATGCCAACCAGTTCGAGTTCGAATCCGAGTGGACTG Found at i:18389753 original size:6 final size:6 Alignment explanation
Indices: 18389744--18389756 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 18389734 AAAAAAAACA 18389744 GAGGCT GAGGCT G 1 GAGGCT GAGGCT G 18389757 GGGTCACCGA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.15, G:0.54, T:0.15 Consensus pattern (6 bp): GAGGCT Left flanking sequence: Indices 18389244 -- 18389743 TATATCTTCATCCAAATTCGCTTTCGTAACCTTGACCCACTTGAAATACTTATTCACGCTTTAAC TCCAGTATGAACTTTAGAACCTAACCCAACTGAACTGAACTGAAACTGCGTAGGTGGTTTATAAT TTCGTTGACCTTTTTTTTTGGCGAATCAGCGAAATTCCCTAGACTGTTTTACAAGCAATTTGAAA ACTATTTAAAACAAGCCTAAAACATTGCTATTATCGGCATAAAGCGGAAAGGTTTACAGCCAGAA GTATTTCGTTAAAAGTGTTTGTAAAGTTTATTCAAGGAAACGGCGCATTTACCTGGCAATTTACA TACAAATTCTTTGGGCCCAGGGCTCGGAATCAGATTCGGAATCGGATTCTAACGACCCACAATGA TCGCAGCGCATCGATTAAGGCCCACTTCCGGGTCAAGTTAATGAAACCAAACCGATAGCAACTAT TTTGGCCAAGACTTCGAACTTCGATGTCTGAGAAAAAAAAAAACA Right flanking sequence: Indices 18389757 -- 18390256 GGGTCACCGAAATGTTAACTGTGTCACCGGCGAATTGAACTTGAACTTGCCGATTAGCTTATGCC AACCAGTTCGAGTTCGAATCCGAGTGGACTGCATAAGATGTGGGTGAATGTCGACCGGGCGTATG GTTGATCGGGTGAATCCCTTCGTTGGCCAGGAATCAATCATACGCCGTGTGCGCCTCAGCCAGTG ACAAATTCTTCCGGTGTTTCGGATTTCATTTGCATTCGTCTTTTGTTTGGCCACCAGCCATCAAG CGGATCATAATCGTATGCAAAAGACGTTAGTTTATTATCGCTGTCGCTGCAGACGATTCATGCGA TCGAGTTCGATATATATGTATGTATGTATGTATGTATATATAAATGTATCTGAGGGGTTGCTGCC AGTTATGCAAATATCTTCCGCAAACATTTACATTTAGCCAACAGTCAAACTGGCGAACAAACCGT TAAACAATTATTATTGAATTTGTTTGTATATTCGCGGCAAATTGC Found at i:18389802 original size:6 final size:6 Alignment explanation
Indices: 18389791--18389805 Score: 30 Period size: 6 Copynumber: 2.5 Consensus size: 6 18389781 CACCGGCGAA 18389791 TTGAAC TTGAAC TTG 1 TTGAAC TTGAAC TTG 18389806 CCGATTAGCT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40 Consensus pattern (6 bp): TTGAAC Left flanking sequence: Indices 18389291 -- 18389790 ACTTATTCACGCTTTAACTCCAGTATGAACTTTAGAACCTAACCCAACTGAACTGAACTGAAACT GCGTAGGTGGTTTATAATTTCGTTGACCTTTTTTTTTGGCGAATCAGCGAAATTCCCTAGACTGT TTTACAAGCAATTTGAAAACTATTTAAAACAAGCCTAAAACATTGCTATTATCGGCATAAAGCGG AAAGGTTTACAGCCAGAAGTATTTCGTTAAAAGTGTTTGTAAAGTTTATTCAAGGAAACGGCGCA TTTACCTGGCAATTTACATACAAATTCTTTGGGCCCAGGGCTCGGAATCAGATTCGGAATCGGAT TCTAACGACCCACAATGATCGCAGCGCATCGATTAAGGCCCACTTCCGGGTCAAGTTAATGAAAC CAAACCGATAGCAACTATTTTGGCCAAGACTTCGAACTTCGATGTCTGAGAAAAAAAAAAACAGA GGCTGAGGCTGGGGTCACCGAAATGTTAACTGTGTCACCGGCGAA Right flanking sequence: Indices 18389806 -- 18390305 CCGATTAGCTTATGCCAACCAGTTCGAGTTCGAATCCGAGTGGACTGCATAAGATGTGGGTGAAT GTCGACCGGGCGTATGGTTGATCGGGTGAATCCCTTCGTTGGCCAGGAATCAATCATACGCCGTG TGCGCCTCAGCCAGTGACAAATTCTTCCGGTGTTTCGGATTTCATTTGCATTCGTCTTTTGTTTG GCCACCAGCCATCAAGCGGATCATAATCGTATGCAAAAGACGTTAGTTTATTATCGCTGTCGCTG CAGACGATTCATGCGATCGAGTTCGATATATATGTATGTATGTATGTATGTATATATAAATGTAT CTGAGGGGTTGCTGCCAGTTATGCAAATATCTTCCGCAAACATTTACATTTAGCCAACAGTCAAA CTGGCGAACAAACCGTTAAACAATTATTATTGAATTTGTTTGTATATTCGCGGCAAATTGCGTAG ACAAAATTGAGTCGCAAGGGTAATAATCAAATGTGCAAAATGTCT Found at i:18389837 original size:6 final size:6 Alignment explanation
Indices: 18389826--18389846 Score: 28 Period size: 6 Copynumber: 3.5 Consensus size: 6 18389816 TATGCCAACC * * 18389826 AGTTCG AGTTCG AATCCG AGT 1 AGTTCG AGTTCG AGTTCG AGT 18389847 GGACTGCATA Statistics Matches: 12, Mismatches: 3, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 6 12 1.00 ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29 Consensus pattern (6 bp): AGTTCG Left flanking sequence: Indices 18389326 -- 18389825 AACCTAACCCAACTGAACTGAACTGAAACTGCGTAGGTGGTTTATAATTTCGTTGACCTTTTTTT TTGGCGAATCAGCGAAATTCCCTAGACTGTTTTACAAGCAATTTGAAAACTATTTAAAACAAGCC TAAAACATTGCTATTATCGGCATAAAGCGGAAAGGTTTACAGCCAGAAGTATTTCGTTAAAAGTG TTTGTAAAGTTTATTCAAGGAAACGGCGCATTTACCTGGCAATTTACATACAAATTCTTTGGGCC CAGGGCTCGGAATCAGATTCGGAATCGGATTCTAACGACCCACAATGATCGCAGCGCATCGATTA AGGCCCACTTCCGGGTCAAGTTAATGAAACCAAACCGATAGCAACTATTTTGGCCAAGACTTCGA ACTTCGATGTCTGAGAAAAAAAAAAACAGAGGCTGAGGCTGGGGTCACCGAAATGTTAACTGTGT CACCGGCGAATTGAACTTGAACTTGCCGATTAGCTTATGCCAACC Right flanking sequence: Indices 18389847 -- 18390346 GGACTGCATAAGATGTGGGTGAATGTCGACCGGGCGTATGGTTGATCGGGTGAATCCCTTCGTTG GCCAGGAATCAATCATACGCCGTGTGCGCCTCAGCCAGTGACAAATTCTTCCGGTGTTTCGGATT TCATTTGCATTCGTCTTTTGTTTGGCCACCAGCCATCAAGCGGATCATAATCGTATGCAAAAGAC GTTAGTTTATTATCGCTGTCGCTGCAGACGATTCATGCGATCGAGTTCGATATATATGTATGTAT GTATGTATGTATATATAAATGTATCTGAGGGGTTGCTGCCAGTTATGCAAATATCTTCCGCAAAC ATTTACATTTAGCCAACAGTCAAACTGGCGAACAAACCGTTAAACAATTATTATTGAATTTGTTT GTATATTCGCGGCAAATTGCGTAGACAAAATTGAGTCGCAAGGGTAATAATCAAATGTGCAAAAT GTCTTTGGCTTGTAGAACCCTCAATTGGCGATGGGACAAAACATT Found at i:18390103 original size:4 final size:4 Alignment explanation
Indices: 18390092--18390130 Score: 50 Period size: 4 Copynumber: 9.8 Consensus size: 4 18390082 TCGAGTTCGA * * * * 18390092 TATA TATG TATG TATG TATG TATG TATA TATA AATG TAT 1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT 18390131 CTGAGGGGTT Statistics Matches: 30, Mismatches: 5, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 4 30 1.00 ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49 Consensus pattern (4 bp): TATG Left flanking sequence: Indices 18389592 -- 18390091 TCGGAATCAGATTCGGAATCGGATTCTAACGACCCACAATGATCGCAGCGCATCGATTAAGGCCC ACTTCCGGGTCAAGTTAATGAAACCAAACCGATAGCAACTATTTTGGCCAAGACTTCGAACTTCG ATGTCTGAGAAAAAAAAAAACAGAGGCTGAGGCTGGGGTCACCGAAATGTTAACTGTGTCACCGG CGAATTGAACTTGAACTTGCCGATTAGCTTATGCCAACCAGTTCGAGTTCGAATCCGAGTGGACT GCATAAGATGTGGGTGAATGTCGACCGGGCGTATGGTTGATCGGGTGAATCCCTTCGTTGGCCAG GAATCAATCATACGCCGTGTGCGCCTCAGCCAGTGACAAATTCTTCCGGTGTTTCGGATTTCATT TGCATTCGTCTTTTGTTTGGCCACCAGCCATCAAGCGGATCATAATCGTATGCAAAAGACGTTAG TTTATTATCGCTGTCGCTGCAGACGATTCATGCGATCGAGTTCGA Right flanking sequence: Indices 18390131 -- 18390630 CTGAGGGGTTGCTGCCAGTTATGCAAATATCTTCCGCAAACATTTACATTTAGCCAACAGTCAAA CTGGCGAACAAACCGTTAAACAATTATTATTGAATTTGTTTGTATATTCGCGGCAAATTGCGTAG ACAAAATTGAGTCGCAAGGGTAATAATCAAATGTGCAAAATGTCTTTGGCTTGTAGAACCCTCAA TTGGCGATGGGACAAAACATTATAAAGTAATTATGATAACTGGTGATTTTTCTGCTTTCAAGGGC GTCAAACAGTTGAATCATTGATTTCCGATGATCAAACAATTTCAGCAAAGTTACTCCAATAAAAC GAACTTTATTTTCCTGCCTACAGCAACTTGTAGTCGTAAGATTGTTAACAGCAATTGCAAATGAG GCTCTTAAATGTTTAATTGGCCGCATTAAAGTTTTTTGCGGTCCGCCGACTTCAATTTCCGAGCT TGGCTTTTTCACACGCTGCTGGCGCCATCTGGTGTTCAAGTTTGC Found at i:18390181 original size:6 final size:6 Alignment explanation
Indices: 18390170--18390182 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 18390160 TCTTCCGCAA 18390170 ACATTT ACATTT A 1 ACATTT ACATTT A 18390183 GCCAACAGTC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.38, C:0.15, G:0.00, T:0.46 Consensus pattern (6 bp): ACATTT Left flanking sequence: Indices 18389670 -- 18390169 GTTAATGAAACCAAACCGATAGCAACTATTTTGGCCAAGACTTCGAACTTCGATGTCTGAGAAAA AAAAAAACAGAGGCTGAGGCTGGGGTCACCGAAATGTTAACTGTGTCACCGGCGAATTGAACTTG AACTTGCCGATTAGCTTATGCCAACCAGTTCGAGTTCGAATCCGAGTGGACTGCATAAGATGTGG GTGAATGTCGACCGGGCGTATGGTTGATCGGGTGAATCCCTTCGTTGGCCAGGAATCAATCATAC GCCGTGTGCGCCTCAGCCAGTGACAAATTCTTCCGGTGTTTCGGATTTCATTTGCATTCGTCTTT TGTTTGGCCACCAGCCATCAAGCGGATCATAATCGTATGCAAAAGACGTTAGTTTATTATCGCTG TCGCTGCAGACGATTCATGCGATCGAGTTCGATATATATGTATGTATGTATGTATGTATATATAA ATGTATCTGAGGGGTTGCTGCCAGTTATGCAAATATCTTCCGCAA Right flanking sequence: Indices 18390183 -- 18390682 GCCAACAGTCAAACTGGCGAACAAACCGTTAAACAATTATTATTGAATTTGTTTGTATATTCGCG GCAAATTGCGTAGACAAAATTGAGTCGCAAGGGTAATAATCAAATGTGCAAAATGTCTTTGGCTT GTAGAACCCTCAATTGGCGATGGGACAAAACATTATAAAGTAATTATGATAACTGGTGATTTTTC TGCTTTCAAGGGCGTCAAACAGTTGAATCATTGATTTCCGATGATCAAACAATTTCAGCAAAGTT ACTCCAATAAAACGAACTTTATTTTCCTGCCTACAGCAACTTGTAGTCGTAAGATTGTTAACAGC AATTGCAAATGAGGCTCTTAAATGTTTAATTGGCCGCATTAAAGTTTTTTGCGGTCCGCCGACTT CAATTTCCGAGCTTGGCTTTTTCACACGCTGCTGGCGCCATCTGGTGTTCAAGTTTGCAAAGCCA AGCTTAAAAAGCTTAACAATTTCGATGTGTTGCAAGCATGACTGA Found at i:18391093 original size:5 final size:5 Alignment explanation
Indices: 18391079--18391099 Score: 26 Period size: 5 Copynumber: 4.0 Consensus size: 5 18391069 CGAAGAACGT * 18391079 TCTTA ACTTA TCTTA TACTTA 1 TCTTA TCTTA TCTTA T-CTTA 18391100 ACATATTATT Statistics Matches: 13, Mismatches: 2, Indels: 1 0.81 0.12 0.06 Matches are distributed among these distances: 5 9 0.69 6 4 0.31 ACGTcount: A:0.29, C:0.19, G:0.00, T:0.52 Consensus pattern (5 bp): TCTTA Left flanking sequence: Indices 18390579 -- 18391078 CCGAGCTTGGCTTTTTCACACGCTGCTGGCGCCATCTGGTGTTCAAGTTTGCAAAGCCAAGCTTA AAAAGCTTAACAATTTCGATGTGTTGCAAGCATGACTGAAAAATATTGGTTTAAATCTACAAAAG TTAAGACTAAAACTTGGCTAAAACTCTTTGAATTAAATTTTTATACAAATATTATTTTATACACA GCTGTAGACTGTGAAGAAAAAAGCCATGCAAATTTTTAAAACAAAATACAATAATTATTACAAAC ATTTTTTATTAGTTTTTAATGATCATAATACCATTATTAAATGTGGTAGGTTATAACCGATGATG AATTGATTGCTCAGGGATTCCCACAAAAATCACACGACAGACAAAAGATATAGTAGATCAATAAT CTTGAATAATTTTAAATGATCATTATTGTCAAATATAAAAGTTTACTTTATGCTTTTATTTATCA ACAAAATGTTGGCAATTTTGTAGCCTGCACTGCACCGAAGAACGT Right flanking sequence: Indices 18391100 -- 18391599 ACATATTATTATCATAGTATTTTTTAATAGAAAGAAATGTCTCTCATATAAAATATATGTTTATA ATCAACATCTATTAAAACTAGAACCGTATTTTGTAAGTGACTTTTTAAGTAGAAATCAATGGCAT TTCCTACATTATCCGTATATATGTATAACAAAAGTTAATTACAAGCGTAACTAAAGTTCTAACGG AAACTTAATTTCCCTGTTTACCTCGAAGTAGGCCTATTATTAGAAGACAACCCCCCCTAGAAAGA ACAATGGGTAAATGATCAGCTCCAATTAGCCGATTACATGACAGGTGGCAACTGATCGGGATGCG ATTGTAACCGGGTCGATGCTCTATGGCCATAAAACTCATCCAAAGTGGCTCGTTATCGAGTCAAT TGCGCAAATCGAACTCGTTTCCGTAGCGCGGAAATGCCGTAGCACCAATATACAATATTCCAATC TATATATCTTTTGCGAACTCTTGTTCTCGAATCCGAACCGATCTC Found at