TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_4 assembled 2004-3-17 md5checksum:7c705dd3e2c1b9917a1d4035df4831cb Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 1281640 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Warning! 100 characters in sequence are not A, C, G, or T Found at i: i:651861 original size:6 final size:6 Alignment explanation
Indices: 651839--651864 Score: 31 Period size: 6 Copynumber: 4.7 Consensus size: 6 651829 GAATCTAGAC * 651839 ATTTAT ATTTGT A--TAT ATTTAT ATTT 1 ATTTAT ATTTAT ATTTAT ATTTAT ATTT 651865 TTAATTTTTC Statistics Matches: 16, Mismatches: 2, Indels: 4 0.73 0.09 0.18 Matches are distributed among these distances: 4 3 0.19 6 13 0.81 ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65 Consensus pattern (6 bp): ATTTAT Left flanking sequence: Indices 651339 -- 651838 TATATAAAGTATATATATATATATATATATCAGGATCCGTCCGTATGAACGTTGAGATCTCAGGA ACTAAAGAAGCTAAGAAGTTGAGATTAAACATACAGTTTCCAGAGACATAGACGCTGCGACCACT CTAACGCCCACAAGCCACCCAAAACTGCCACGCCCACACTTTTGAAAAATTTTTAAATTGTTTTC TCATTCTCACTTCTTGTGGATGTTGAATATAGCATTCTCTCTTGTTTCATTTTAATTTGTCTTAC TATTTTATCGGTACACCAAAAACTTAAGTACTTACGTACCTACAAACCAAAAATTTGTAACTTGG CTCTTAGAGTTTTGAGCGGCTTGTGGGTATTAGACTGGACATGGCAAAAAATTGTTTGGCCAATC TATAGAAATTTACAAGCCAAATAAAAATATGAAAATATATCAAAACTTTTTTTACTCGTTTTAAT AATAGTTGAGCAACATTTAGATTCCATATAAAATCGAATCTAGAC Right flanking sequence: Indices 651865 -- 652364 TTAATTTTTCAGTTGGTAAAAATTGAGCAACTCCCCGATCGCGGATCATGGTCTTCCAAAATGGA TTTCATACTATCAGTAGTGGGCCTAGCTATAGGTTTGGGAAACGTTTGGCGATTTCCCTATTTGT GCTACAAAAATGGAGGCGGTGCATTTATATTACCATACATTATTACACTGTTTTTGGCAGGTATT CCAATGTTTTTCATGGAACTAGCTCTTGGTCAAATGTTGACGATTGGTGGACTCGGTGTATTCAA AATTGCACCCATATTTAAAGGTGAGAAAATATTTTTGTTACCCTTACCTTTGACCTTTACCTGTA AACGACTATATAATAATTAACGTTTTTTTGCAAGTTATGGCTATGCAATGAACGACATAAACATT TTTATATGGTATCTCTTTTAAAGGAATTGGGTATGCTGCTGCTGTAATGTCTTGTTGGATGAATG TATACTATATTGTCATTCTTGCGTGGGCGGTATTTTACTTCTTTA Found at i:652186 original size:6 final size:6 Alignment explanation
Indices: 652162--652186 Score: 34 Period size: 6 Copynumber: 4.0 Consensus size: 6 652152 AATATTTTTG * 652162 TTACCC TTACCT TTGACCT TTACCT 1 TTACCT TTACCT TT-ACCT TTACCT 652187 GTAAACGACT Statistics Matches: 17, Mismatches: 1, Indels: 2 0.85 0.05 0.10 Matches are distributed among these distances: 6 11 0.65 7 6 0.35 ACGTcount: A:0.16, C:0.36, G:0.04, T:0.44 Consensus pattern (6 bp): TTACCT Left flanking sequence: Indices 651662 -- 652161 GGCTCTTAGAGTTTTGAGCGGCTTGTGGGTATTAGACTGGACATGGCAAAAAATTGTTTGGCCAA TCTATAGAAATTTACAAGCCAAATAAAAATATGAAAATATATCAAAACTTTTTTTACTCGTTTTA ATAATAGTTGAGCAACATTTAGATTCCATATAAAATCGAATCTAGACATTTATATTTGTATATAT TTATATTTTTAATTTTTCAGTTGGTAAAAATTGAGCAACTCCCCGATCGCGGATCATGGTCTTCC AAAATGGATTTCATACTATCAGTAGTGGGCCTAGCTATAGGTTTGGGAAACGTTTGGCGATTTCC CTATTTGTGCTACAAAAATGGAGGCGGTGCATTTATATTACCATACATTATTACACTGTTTTTGG CAGGTATTCCAATGTTTTTCATGGAACTAGCTCTTGGTCAAATGTTGACGATTGGTGGACTCGGT GTATTCAAAATTGCACCCATATTTAAAGGTGAGAAAATATTTTTG Right flanking sequence: Indices 652187 -- 652686 GTAAACGACTATATAATAATTAACGTTTTTTTGCAAGTTATGGCTATGCAATGAACGACATAAAC ATTTTTATATGGTATCTCTTTTAAAGGAATTGGGTATGCTGCTGCTGTAATGTCTTGTTGGATGA ATGTATACTATATTGTCATTCTTGCGTGGGCGGTATTTTACTTCTTTATGTCGATGAGAGCAGGT TTGTAATCGGTTTAATTTAAATCATATTTAAATTTAAATCTGCTATTTTGTGCTTAAACACATTA CGCTCATTCAGATGTTCCGTGGAGAACGTGCAACAATTGGTGGAACACAGTCAACTGTGTCAGTC AATATGAAAGGAAAAATTTGCATTGCTGGGATAAGATTATCAACGGCACCACGCAAAAGGTTTGC TCCGTATCTGCTCTTAACATAACATCTTTAGAACTCACAGATCCAGTCAAAGAGTTTTGGGAGTA CGTAATATATTCAAGTGCGAGTTCATTAAATCATTCAATCAAATG Found at i:652418 original size:6 final size:6 Alignment explanation
Indices: 652395--652420 Score: 31 Period size: 6 Copynumber: 4.5 Consensus size: 6 652385 TAATCGGTTT * * 652395 AATTTA AA-TCA TATTTA AATTTA AAT 1 AATTTA AATTTA AATTTA AATTTA AAT 652421 CTGCTATTTT Statistics Matches: 15, Mismatches: 4, Indels: 2 0.71 0.19 0.10 Matches are distributed among these distances: 5 3 0.20 6 12 0.80 ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46 Consensus pattern (6 bp): AATTTA Left flanking sequence: Indices 651895 -- 652394 CTCCCCGATCGCGGATCATGGTCTTCCAAAATGGATTTCATACTATCAGTAGTGGGCCTAGCTAT AGGTTTGGGAAACGTTTGGCGATTTCCCTATTTGTGCTACAAAAATGGAGGCGGTGCATTTATAT TACCATACATTATTACACTGTTTTTGGCAGGTATTCCAATGTTTTTCATGGAACTAGCTCTTGGT CAAATGTTGACGATTGGTGGACTCGGTGTATTCAAAATTGCACCCATATTTAAAGGTGAGAAAAT ATTTTTGTTACCCTTACCTTTGACCTTTACCTGTAAACGACTATATAATAATTAACGTTTTTTTG CAAGTTATGGCTATGCAATGAACGACATAAACATTTTTATATGGTATCTCTTTTAAAGGAATTGG GTATGCTGCTGCTGTAATGTCTTGTTGGATGAATGTATACTATATTGTCATTCTTGCGTGGGCGG TATTTTACTTCTTTATGTCGATGAGAGCAGGTTTGTAATCGGTTT Right flanking sequence: Indices 652421 -- 652920 CTGCTATTTTGTGCTTAAACACATTACGCTCATTCAGATGTTCCGTGGAGAACGTGCAACAATTG GTGGAACACAGTCAACTGTGTCAGTCAATATGAAAGGAAAAATTTGCATTGCTGGGATAAGATTA TCAACGGCACCACGCAAAAGGTTTGCTCCGTATCTGCTCTTAACATAACATCTTTAGAACTCACA GATCCAGTCAAAGAGTTTTGGGAGTACGTAATATATTCAAGTGCGAGTTCATTAAATCATTCAAT CAAATGTTTTGTTTAAGGCGGCGAGCTCTTCAAATATCGCATGGTATTGAGGAGATTGGAAATAT TCGCTGGGAGTTGGCTGGAACTTTATTACTTGTTTGGATCCTCTGCTACTTTTGTATTTGGAAGG GAGTAAAATGGACAGGGAAAGTAGTATATTTTACTGCCTTGTTTCCCTACGTTCTCCTGACGATT CTACTGGTTCGCGGAATTACATTACCTGGCGCTTTAGAAGGCATT Found at i:653959 original size:6 final size:6 Alignment explanation
Indices: 653939--653959 Score: 26 Period size: 6 Copynumber: 3.3 Consensus size: 6 653929 GGTCTTGCCT * 653939 CTTCTT CTTCATG CTTCTG CT 1 CTTCTG CTTC-TG CTTCTG CT 653960 CATTGGATTG Statistics Matches: 13, Mismatches: 1, Indels: 2 0.81 0.06 0.12 Matches are distributed among these distances: 6 8 0.62 7 5 0.38 ACGTcount: A:0.05, C:0.33, G:0.10, T:0.52 Consensus pattern (6 bp): CTTCTG Left flanking sequence: Indices 653439 -- 653938 AGTTCTTTATCGTATTCCAAAACAGTTTTGGAAAGTTTAAGTCCGTAAAAAATTGAAGTGAACTA ATAATTGAATGCTATGGAATAAAAGCATAGTCTTAGTTATATCATTGATTAAAATATTTTTAAAA TATGTTATAGGTGTGGATCGACGCTGTGACGCAAATATTTTTCTCATACGGGCTTGGACTTGGTA CTTTGGTGGCGTTAGGAAGTTACAACAAGTTTACCAATAACGTCTACAAGTAGGTCACTGAACTC AAACAAAATTTACATTTTGTTGGTAAAAAAAATTATTTTTAGGGACGCGCTTATTGTCTGCACAG TTAATTCTAGCACCAGTATGTTTGCTGGATTCGTAATATTTTCGGTAATAGGATTTATGGCTCAC GAGCAACAGCGACCAGTGGCTGATGTAGCCGCATCAGGACCTGGCCTTGCATTTCTTGTCTATCC ATCGGCAGTTCTGCAGTTACCAGGGTCTCCAATGTGGTCTTGCCT Right flanking sequence: Indices 653960 -- 654459 CATTGGATTGGACTCACAGTTTTGTACAATGGAGGGCTTTATCACTGCCATTATTGATGAATGGC CGCAGTTGCTGCGGAAGCGGAAAGAAATATTTATTGCTATTGTATGCGCTCTTAGCTACTTAGTG GGCTTAACCTGTATTACACAAGTATGTTTTAAAGTTGGCACCGCTGTCGAACTTTATTCACTGGG TGTCATTATTTTTTAGGGTGGCATGTATATTTTTCAAATATTGGATTCATATGCAGTTAGCGGCT TTTGCTTACTGTGGCTCATATTCTTTGAATGTGTTTCAATATCTTGGTGCTATGGAGTGGATCGA TTTTATGACGGAATAAAGGATATGATCGGATATTATCCCACTGTTTGGTGGAAGTTCTGCTGGTG TGTCACAACGCCCGCTATATGCTTGGTTAGTATTTTTATTAAATAATCATTTCTTATCTAATTAT ATTTTTTTATAGGGAGTGTTTTTCTTTAACATAGTTCAGTGGACT Found at i:655456 original size:5 final size:5 Alignment explanation
Indices: 655446--655467 Score: 44 Period size: 5 Copynumber: 4.4 Consensus size: 5 655436 CAATGAAATT 655446 ATGTA ATGTA ATGTA ATGTA AT 1 ATGTA ATGTA ATGTA ATGTA AT 655468 AAGGTTGACA Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 17 1.00 ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41 Consensus pattern (5 bp): ATGTA Left flanking sequence: Indices 654946 -- 655445 TTTAATTTATGTTCCCTTTATAACTCAGAACTAGTCTTTCTAATCAATCGCAAGGAGTCAAGGTT TTTCAATGGTTATTGCAGTTTTTTTGTCGTACTTACTTAAAGTGGTATGCCAGAAATATCTAGAG TAATTAGAATCACGAATTTCTGAATATTCTGCTTCTGAAGCATTAACATATATATGAAGAATCCA TGCAGTTCTAAAAGCCATTTGTCCCTCATGCTCAATTTTGTGAATCACGCCACAGAGACAAATTT TATTTTTATACTATTACTTCCGTTGTAAGTTTTAGTCCGCAGAAATAGACCCAGGATGTGTTTTG CATGACTTGTCAAGAATGACTTCTCTGATCTGCATGGTTTCAACATGTCAACGGCAAAATCAAAC TGTGGCCTTATCAGTGAGATAAATATCTTTTTTCAAAACTATTACTGAGTAGAATGGGGTTTGAG ATTTAGTTGTGTTTAGAAATAAGATATATTATCCGCAATGAAATT Right flanking sequence: Indices 655468 -- 655967 AAGGTTGACACCATATATATACAGAACAATTTTGACAATGTCTTGACAGTGCTTCAGGCATTGTT ATGTAATTTATCTATAAAATGTCAATATGTTGCTTAACGTGTCAAATAAATTGAATATCTATCCA CACAAGCCTTAATCGAAGATTAACGGGGAGATTTTCCGATATCTGAAAGTCGAGGACTGGACTCC ATCCTTTTATCACGTACATTTGAATTTATATGGTGCTTGTTTTTCCAACTGAGACTGACGTCAAT CTAATCTATACACAGGGATTGTTGACACTCTAACCTTTCCGCACTGTAAAATAATTCACATATGA AGCTTGAATTTTAGGTGTTCGAAAGAATTACAGACAATAAACGCTAGGAGTTACATATTTATTAG AAAACTGACACACACGCACAATACACAAGTGTCTATTCACAAGAGTGAATATGGGCGTGTTGCTC AGTGAACTAGTCTTCTGGACTATTGGACCTTGGCGGGCTGACCAC Found at i:656018 original size:4 final size:4 Alignment explanation
Indices: 656009--656024 Score: 32 Period size: 4 Copynumber: 4.0 Consensus size: 4 655999 GAAAATCAAG 656009 TAAA TAAA TAAA TAAA 1 TAAA TAAA TAAA TAAA 656025 ACTCAATAGG Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 12 1.00 ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25 Consensus pattern (4 bp): TAAA Left flanking sequence: Indices 655509 -- 656008 CTTGACAGTGCTTCAGGCATTGTTATGTAATTTATCTATAAAATGTCAATATGTTGCTTAACGTG TCAAATAAATTGAATATCTATCCACACAAGCCTTAATCGAAGATTAACGGGGAGATTTTCCGATA TCTGAAAGTCGAGGACTGGACTCCATCCTTTTATCACGTACATTTGAATTTATATGGTGCTTGTT TTTCCAACTGAGACTGACGTCAATCTAATCTATACACAGGGATTGTTGACACTCTAACCTTTCCG CACTGTAAAATAATTCACATATGAAGCTTGAATTTTAGGTGTTCGAAAGAATTACAGACAATAAA CGCTAGGAGTTACATATTTATTAGAAAACTGACACACACGCACAATACACAAGTGTCTATTCACA AGAGTGAATATGGGCGTGTTGCTCAGTGAACTAGTCTTCTGGACTATTGGACCTTGGCGGGCTGA CCACTATCCCAAGCAAAACTCAAGAGGAATGCAGTGAAAATCAAG Right flanking sequence: Indices 656025 -- 656524 ACTCAATAGGGATGCATCCCTATGCAAGTTGAGCTTCGGCGTTCCGATTTCAGAGCCGTAGACCC AGCGCAAGTTTGTTTCAGACCATTGCTATGCCCACCTCACGCCCAAAAACTGCCCCTTCCGAACT TTTGAGAACTGTTTTATCTTTTTGTATTGACAATTTCTATCGATATGCGTAAAACAATTTGGCAA CGCCAGTCTTAGGCCCACAAACCCCAAAGCTGTCACGCCCACAATTTGGAAAATGTTCAGATTTT TTTATTGCTATTTTTTTATTTTGAAATATCTTCTTACCATCAGCTGAGGAACTGAAGTATCTTAT AGACGAGAAAATAGACATAGCGATCTTTCTTATTTTGTAATTGTGTTTATATATTTTTAGCTTTC TTTATAAATTTATAATTTCCAAGTATATGTATGTAATTTATTAGAATTAATTTCTTAAATCCTTG AATCTTTTTAAAAACTAGAACTTATAAAACATAGATCGAATCGAA Found at i:657082 original size:2 final size:2 Alignment explanation
Indices: 657070--657115 Score: 78 Period size: 2 Copynumber: 23.0 Consensus size: 2 657060 CTATATGACG * * 657070 TA TA CA TA TA TA TA TA TA TA TA TA TA CA TA TA TA TA TA TA TA 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 657112 TA TA 1 TA TA 657116 GACGGACATG Statistics Matches: 40, Mismatches: 4, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 2 40 1.00 ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46 Consensus pattern (2 bp): TA Left flanking sequence: Indices 656570 -- 657069 AATTCGTTGGCCTTTCGGGATGGTACATTTGCTACATGTGCGAGTTAGTGCAGGCCTCTTTTGCT TGTTCATACACCAAGATGCGTAGCGGAGTTCCTCAGCAATTTCGATCCAAAATGAACGGTCAGGT GGGGTATAGTTTCTTTCGCTTTCGAGGATCCCATCTTGATTGTATTTATTGTTAACGACTGATTG AGATGGTGTAGCTTCATAGTTGTATCGAAAGTTATACCAAAATTCGAAGAACGCAACAACTGCAG CCACAATAATTCCAGCTATTAGCACTACAAATACGCCGCCTGTGTAATTGATTTATTACTGATTA TAAGCATTACGTTGTTATTCAATTTAAATTTATTTGAGGGTTCACATGGGGGTTTCAAAAAAGAA AAATTTATTTTTAATACATGTACTTTAGTAATTGAGTATGAAGCTGTACTATACGGTATACTAAA TGCGTTGAAGACACGGCAGAATGAAACGTTTCCGACTATATGACG Right flanking sequence: Indices 657116 -- 657615 GACGGACATGGCCAGTTCGACTGGGTCAGTCGAACTGGCCATGTCCGTCTGTCCGTATGAACGCC TCGATCTCAGGAACTATAAAATATAGAATGTTCCAGTGATATAGACGTATCGGAATTTCGTTGAC CCATGTTTCCACTTCCACTCTAACGCCCACAAACGGCACAAAACTCCCACGCCCACAAATTTCAT AAATTTGTAAATGTGGCTGAGTAACGGGTGTCTGATAGTCAGGGAGCTGGAATTCTCTCTTGTTT TTCATTTTATTTGTTTTCTGGTTTTGGTTGCCAATGCCTATCGATGTGCCACAAGCTACGTCACG GGTATCTGATAGTCAAAGATACCATACCATTTGTATATATTTATTTTATGCCGTCTATATTCATG TAGTAATTGTTGTTATTTGAACTTTACATACATTAATACTTTTCAAATCCATTTGCTTTTTTTAA ACGAAACTATAGATATTGCAGCAACAAATGAATGAATACAAGTAC Found at i:657263 original size:6 final size:6 Alignment explanation
Indices: 657252--657264 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 657242 TGACCCATGT 657252 TTCCAC TTCCAC T 1 TTCCAC TTCCAC T 657265 CTAACGCCCA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.46, G:0.00, T:0.38 Consensus pattern (6 bp): TTCCAC Left flanking sequence: Indices 656752 -- 657251 TAACGACTGATTGAGATGGTGTAGCTTCATAGTTGTATCGAAAGTTATACCAAAATTCGAAGAAC GCAACAACTGCAGCCACAATAATTCCAGCTATTAGCACTACAAATACGCCGCCTGTGTAATTGAT TTATTACTGATTATAAGCATTACGTTGTTATTCAATTTAAATTTATTTGAGGGTTCACATGGGGG TTTCAAAAAAGAAAAATTTATTTTTAATACATGTACTTTAGTAATTGAGTATGAAGCTGTACTAT ACGGTATACTAAATGCGTTGAAGACACGGCAGAATGAAACGTTTCCGACTATATGACGTATACAT ATATATATATATATATATACATATATATATATATATATAGACGGACATGGCCAGTTCGACTGGGT CAGTCGAACTGGCCATGTCCGTCTGTCCGTATGAACGCCTCGATCTCAGGAACTATAAAATATAG AATGTTCCAGTGATATAGACGTATCGGAATTTCGTTGACCCATGT Right flanking sequence: Indices 657265 -- 657764 CTAACGCCCACAAACGGCACAAAACTCCCACGCCCACAAATTTCATAAATTTGTAAATGTGGCTG AGTAACGGGTGTCTGATAGTCAGGGAGCTGGAATTCTCTCTTGTTTTTCATTTTATTTGTTTTCT GGTTTTGGTTGCCAATGCCTATCGATGTGCCACAAGCTACGTCACGGGTATCTGATAGTCAAAGA TACCATACCATTTGTATATATTTATTTTATGCCGTCTATATTCATGTAGTAATTGTTGTTATTTG AACTTTACATACATTAATACTTTTCAAATCCATTTGCTTTTTTTAAACGAAACTATAGATATTGC AGCAACAAATGAATGAATACAAGTACCATTACTTGTTTACAAGCTTCGATTTGGAAACTTATGAT CTGGAAGACTTTAAATATAATTTCGTGAACATTACATCGTTTCGATTGGTCGACACTGCGGATGT TGGGGTAAAGCAAATCTTGAAGGATATCGGATTGTATAGTCACCA Found at i:658211 original size:5 final size:5 Alignment explanation
Indices: 658201--658213 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 658191 TAGAAATGCC 658201 TTACA TTACA TTA 1 TTACA TTACA TTA 658214 TGTGACGATT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.38, C:0.15, G:0.00, T:0.46 Consensus pattern (5 bp): TTACA Left flanking sequence: Indices 657701 -- 658200 TGGTCGACACTGCGGATGTTGGGGTAAAGCAAATCTTGAAGGATATCGGATTGTATAGTCACCAT ATAGTTAAAAAACCTTATTTGAATCTACATATTAAAAAATCAACCATTCTTGAGGTAAGCTTAAT AGAAATGACGTGGTAAGTACACTATAATAAAAGCGTTTCTACAAATCTTTAGTCAGAGCCAGCCC TAATGTTCGATTCGGTGTACGTTTTCGCGATTGGATTGCAGACACTGGAACAATCACACTCTTTA ACCCTTTTAAATATAAGCTGCGAGGAGGAAAACTCGTGGGACGGGGGCCTTAGTCTTATTAACTA CTTAAATGCGGTGACTTTGACTGCAAATAAGGGGCTAAACAATAAACAACATTTTATTGAAATAG CGATATTACATTTTTCAGTTTGGGGTGATTACTTCAGTATGAGAATGTACATTATGTCTATAAAA AATTATCTACGAGGTGTAAAAAGTTTACTTTACTCTAGAAATGCC Right flanking sequence: Indices 658214 -- 658713 TGTGACGATTAGTAGACCAAATAACAATATCAAAACAACTTCGGAATATATATAAGACCCAGTAA ATGGGTTATAACCACAGATTTTGTGAAAATCAACTGGTTAAAAAGAAAGAATGCAATAAGTGTAA AATTAAAACAAAACTTTAAAAAGCAGTCGAACATCTAATATTTCGTTTGTCTCCATTTCCTTCAA AGATAATAAAAATAATTCCAACATTTGTTTTAGCTAGATGCTTTCTTAAATATCGAAATGAAGTT TATCAAAAATTTAAATTATTGTTTGGTATAATCGATATATTGTTAATATATATAAACTTTTGGAA ACAAAGATGCGCTGCGTCTATGTCCCCTCTAGAAGTTGCTTGCTTAATCGCAACATTTTATCTTT CATAGTTCCTGAGATCGATGCGTTCATACGGACATGACTAGGATCCTGATCAAGATACATACTTA CATATGCATATATCGCAGGAATCGATTTCACAAGGAATTTCAAGG Found at i:658763 original size:6 final size:6 Alignment explanation
Indices: 658752--658764 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 658742 AAGTCAAAAT 658752 TTTAAA TTTAAA T 1 TTTAAA TTTAAA T 658765 ATATTAAATT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54 Consensus pattern (6 bp): TTTAAA Left flanking sequence: Indices 658252 -- 658751 CTTCGGAATATATATAAGACCCAGTAAATGGGTTATAACCACAGATTTTGTGAAAATCAACTGGT TAAAAAGAAAGAATGCAATAAGTGTAAAATTAAAACAAAACTTTAAAAAGCAGTCGAACATCTAA TATTTCGTTTGTCTCCATTTCCTTCAAAGATAATAAAAATAATTCCAACATTTGTTTTAGCTAGA TGCTTTCTTAAATATCGAAATGAAGTTTATCAAAAATTTAAATTATTGTTTGGTATAATCGATAT ATTGTTAATATATATAAACTTTTGGAAACAAAGATGCGCTGCGTCTATGTCCCCTCTAGAAGTTG CTTGCTTAATCGCAACATTTTATCTTTCATAGTTCCTGAGATCGATGCGTTCATACGGACATGAC TAGGATCCTGATCAAGATACATACTTACATATGCATATATCGCAGGAATCGATTTCACAAGGAAT TTCAAGGAATTTGATATAAATATTATTTTCATGTAAAGTCAAAAT Right flanking sequence: Indices 658765 -- 659264 ATATTAAATTTTCGAGATGGCGGTTTTAATCTATGTTAATGCTTGGTAGAGAGTTTCTGTGAATT TAAATTGACAAGGTTATTACCTTAGAACGAAGAATATTTAATTCCGTCTGTCGTAAGTCAATGGG GAAAAAGTGGAAAATGGTTGATAATCAAACTAAAAGGGTTGTCATCGGGTAATTCATAGTCAATT CTAAGGAAAATTATAACCATGGTGATTTACCTATCTCCAAATCCAATTAGAATGGAATTATTATT TAAGGATTACGTTTCGAATGGCAACAATAGCGTCATTGTAGAGTTTTACCATTCGTTATTTGTAT ATTTTTTATTTTTTTAATTTATTAGGTGAGTAATTGATCATAAGTATAAAAGCAAATCCTTAGAA AACAAATCAATATCATGTGGACAATAATAAGCAATAACTAATAATCAAACAGCATATTTACCTTA ATATAACTGTAGTACATATTAGCCAATTGCATTGTGAAAACGTAC Found at i:660501 original size:1 final size:1 Alignment explanation
Indices: 660495--660507 Score: 26 Period size: 1 Copynumber: 13.0 Consensus size: 1 660485 TTGTCACTTC 660495 AAAAAAAAAAAAA 1 AAAAAAAAAAAAA 660508 TATAAACAAA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 12 1.00 ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00 Consensus pattern (1 bp): A Left flanking sequence: Indices 659995 -- 660494 GTGAAAAAAAACCCCAAGTACTGCTTATTATTCGAGTCGACATTGCTCGTGGATAAATATCAGGT GACTGTTGCATAAAAGTCCCTATGGTAAACCAAAAACTGTCAGTTAGGGAGAACTGGTTGCCAAT AGAAATATTTTCTAGATCGCAGGCGTTAATGCACTTCCACTCGATAGGCGAAAGTTTTCCAACAA TATATATGCAGAGAGACACAAGAAAATATGCAATTAGCACATATATCCAAATCTCTATCGCTAAT GGATTCATAAATGAAAAAAGTCTCGTTGGCTCTGATGTTGGGACCTTGAACAAGAAGAGTCTTTT CTATTAACATTACCATATAAAGTAAAAGGATATTTACCTTAAATAAAATACTTATCCCCAAGTTC ATAAATGGTTTGGTAAAATCAATGACGCTTTCTCTTGCATACGTTATAGTCATAGATCCAACTGC CAGGTCCGCCTTCTAAGTATATTTATAAGTGCTATTTGTCACTTC Right flanking sequence: Indices 660508 -- 661007 TATAAACAAACTTACATATTTCATCAGCTGAGCGACCATTCCGTTCCATTCCCCAGTTTCGGGGT CCTTGGCCCCATACTTTCTATCCGGTACCAGATCCAGTATGTAATCAAACCCAACTTCCCGAGAA ATGGTTTCCAATATATCTACGCAAAAACCATAAAATCGTTCGTTTCCCGTAAAATTCTTCCCATA ATGCATCATTACATATGGTGTTTCCTGGAAATTAACTTTACAATTACTTTTATAAATTTTTATTC GTCGTCCTCACAAACCAGAATTGTTATCACTACAAGTGTCACATTCATGGACCCAGCATCGAAAA ACATTGATGGTTCAGTTATATTCAGATGCCCATGAGGAGTCCATTCCCCGACTTTTACAATGGAA TGTTGCTTTAATTTAATTAAGTCCAACTTGAACTGGACCCGCTGGCCATCTTTAAACTGAATCGG ACCTGTCAGACCTTTCCATTCAACCTTAAAGAGTATAAAAAGTAA Found at i:660559 original size:5 final size:5 Alignment explanation
Indices: 660543--660559 Score: 27 Period size: 5 Copynumber: 3.4 Consensus size: 5 660533 AGCTGAGCGA * 660543 CCATT CCGTT CCATT CC 1 CCATT CCATT CCATT CC 660560 CCAGTTTCGG Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 5 10 1.00 ACGTcount: A:0.12, C:0.47, G:0.06, T:0.35 Consensus pattern (5 bp): CCATT Left flanking sequence: Indices 660043 -- 660542 GTGGATAAATATCAGGTGACTGTTGCATAAAAGTCCCTATGGTAAACCAAAAACTGTCAGTTAGG GAGAACTGGTTGCCAATAGAAATATTTTCTAGATCGCAGGCGTTAATGCACTTCCACTCGATAGG CGAAAGTTTTCCAACAATATATATGCAGAGAGACACAAGAAAATATGCAATTAGCACATATATCC AAATCTCTATCGCTAATGGATTCATAAATGAAAAAAGTCTCGTTGGCTCTGATGTTGGGACCTTG AACAAGAAGAGTCTTTTCTATTAACATTACCATATAAAGTAAAAGGATATTTACCTTAAATAAAA TACTTATCCCCAAGTTCATAAATGGTTTGGTAAAATCAATGACGCTTTCTCTTGCATACGTTATA GTCATAGATCCAACTGCCAGGTCCGCCTTCTAAGTATATTTATAAGTGCTATTTGTCACTTCAAA AAAAAAAAAATATAAACAAACTTACATATTTCATCAGCTGAGCGA Right flanking sequence: Indices 660560 -- 661059 CCAGTTTCGGGGTCCTTGGCCCCATACTTTCTATCCGGTACCAGATCCAGTATGTAATCAAACCC AACTTCCCGAGAAATGGTTTCCAATATATCTACGCAAAAACCATAAAATCGTTCGTTTCCCGTAA AATTCTTCCCATAATGCATCATTACATATGGTGTTTCCTGGAAATTAACTTTACAATTACTTTTA TAAATTTTTATTCGTCGTCCTCACAAACCAGAATTGTTATCACTACAAGTGTCACATTCATGGAC CCAGCATCGAAAAACATTGATGGTTCAGTTATATTCAGATGCCCATGAGGAGTCCATTCCCCGAC TTTTACAATGGAATGTTGCTTTAATTTAATTAAGTCCAACTTGAACTGGACCCGCTGGCCATCTT TAAACTGAATCGGACCTGTCAGACCTTTCCATTCAACCTTAAAGAGTATAAAAAGTAATAAACAT AATTAGAAATATAAATAAAAACCGCGAAATTTCATAATTTTTCTG Found at i:661030 original size:6 final size:6 Alignment explanation
Indices: 661007--661035 Score: 30 Period size: 6 Copynumber: 4.8 Consensus size: 6 660997 ATAAAAAGTA * * * * 661007 ATAAAC ATAATT AGAAAT ATAAAT AAAAA 1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAA 661036 CCGCGAAATT Statistics Matches: 17, Mismatches: 6, Indels: 0 0.74 0.26 0.00 Matches are distributed among these distances: 6 17 1.00 ACGTcount: A:0.69, C:0.03, G:0.03, T:0.24 Consensus pattern (6 bp): ATAAAT Left flanking sequence: Indices 660507 -- 661006 ATATAAACAAACTTACATATTTCATCAGCTGAGCGACCATTCCGTTCCATTCCCCAGTTTCGGGG TCCTTGGCCCCATACTTTCTATCCGGTACCAGATCCAGTATGTAATCAAACCCAACTTCCCGAGA AATGGTTTCCAATATATCTACGCAAAAACCATAAAATCGTTCGTTTCCCGTAAAATTCTTCCCAT AATGCATCATTACATATGGTGTTTCCTGGAAATTAACTTTACAATTACTTTTATAAATTTTTATT CGTCGTCCTCACAAACCAGAATTGTTATCACTACAAGTGTCACATTCATGGACCCAGCATCGAAA AACATTGATGGTTCAGTTATATTCAGATGCCCATGAGGAGTCCATTCCCCGACTTTTACAATGGA ATGTTGCTTTAATTTAATTAAGTCCAACTTGAACTGGACCCGCTGGCCATCTTTAAACTGAATCG GACCTGTCAGACCTTTCCATTCAACCTTAAAGAGTATAAAAAGTA Right flanking sequence: Indices 661036 -- 661535 CCGCGAAATTTCATAATTTTTCTGGGATATCAATAGATATTGGGAAATCAAATGAGAAAAAATTA AAGAATTGAATTCCAAAAAGTGGACGTGAACGGTTCGGCGACTTTAGTGCGTGGGCGTGGCAACG TGGCAACGTGGCAACGTGGCAACGTGGGTCAACAAACTTGCGCTGCGTCTTTATCTCTAGAATCT GTATGGTAAATCTTAAACTTCTAGCTTTTATAGTTCCTGAGATCTCGACGTTCATAAGGACAGAC GGACATGGCCAGATCGACTCGGTTATTGATCCAGATCAAGAATATATATACCTTATATAGTCGCA AACGCTGCCCTTTGCCTGCTACATAATTTTCAACGAGCCTAGTACACAATTTTACTCTACTAGTA ACGGGTATAACAATTTATGTACATCGTACTTACTTTTTTGCACTCTACAATCCAAACAAGAAATT CCCAAGCCAAGTCACTGCTTGTTTTCAACAAAATGGGTTTCTAAC Found at i:662130 original size:5 final size:5 Alignment explanation
Indices: 662114--662133 Score: 33 Period size: 5 Copynumber: 4.0 Consensus size: 5 662104 CCACAAATAA * 662114 ATTTT ATCTT ATTTT ATTTT 1 ATTTT ATTTT ATTTT ATTTT 662134 CCGATATCTA Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 5 13 1.00 ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75 Consensus pattern (5 bp): ATTTT Left flanking sequence: Indices 661614 -- 662113 AATTTCCATGACGACTAGTAAAATAAGCGTCTACGTTATATCTGTTTAGCTTTTATAATTCCAGT GAATACAACGTTTAAACTGACAGACAGATGGATATGGGCAGATCGACACGGCAGATCAACAATAT ATGTACTTTATTGGGCCAAAACGTGTCCTTCTAGATTTTCAAAATTTTCAACTTATACACCCAAA ATTAATGCTCATTGGCTAAAACCTTTGGACAAACCATTTTCTTATTTAAATGGCACGCGACATTG CTGTATACAGATAAGTTGATTAGAAATTTTTCGTAATTTCCAGTCGCTTACTTTATTCAAGATTT GTACACCCTTTAATCAGACAGTAAAAAGGGTATACTAGATTCTTTGAAAAGTATTTACAGGTTAC AAACCGCCCTAGCTGCCACGCCCACACCTTTTAAAAATGTATTTGACTTGCCAATTTCTATAGGT ATCCCAACATTTATATGCCACGCCCACTCTAACCCCCACAAATAA Right flanking sequence: Indices 662134 -- 662633 CCGATATCTATTGATAAAAAGTATAAAATTCCGCTTTGGCATTTTAATTAGCTGAGTATCTATTA GTCGGGGGAACTCCACTATAGCATTCTATTTTCTTTTACACTTTAAACATATATAGTAGATAGTA ACATGGTAAGTTCAGATTAGACATTTAGTCTCTGGTAACTCCTGAACTCGCGTCAGGCCACGTCT CTGGGTCCCACACTTATTTTATTTTAGAAAAGATAATGATAATTTTCATTTCGATATTTAGGTAA ACATCCCTAGCTAACAAAATCTGTGGTTATAAACCATTTACTGGGTCTTCTAAACAAACTGAAAA ATGTAATATCGCTATTTTTAATAAAATGTTGTTTCTTGTTTAGCCCCTTATTTGCAGTCAAACTC ACCGCATTTAAGTAGTTAATAAGACTAAGGCCCCCGTCCCACGAGTTTTCCTCCTCGCAGCTTAT ATTTAAAAGGGTTAAAGAGTGTGATTGTTCCAGTGTCTGCAATCC Found at i:662352 original size:5 final size:5 Alignment explanation
Indices: 662342--662354 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 662332 GGTCCCACAC 662342 TTATT TTATT TTA 1 TTATT TTATT TTA 662355 GAAAAGATAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77 Consensus pattern (5 bp): TTATT Left flanking sequence: Indices 661842 -- 662341 CCATTTTCTTATTTAAATGGCACGCGACATTGCTGTATACAGATAAGTTGATTAGAAATTTTTCG TAATTTCCAGTCGCTTACTTTATTCAAGATTTGTACACCCTTTAATCAGACAGTAAAAAGGGTAT ACTAGATTCTTTGAAAAGTATTTACAGGTTACAAACCGCCCTAGCTGCCACGCCCACACCTTTTA AAAATGTATTTGACTTGCCAATTTCTATAGGTATCCCAACATTTATATGCCACGCCCACTCTAAC CCCCACAAATAAATTTTATCTTATTTTATTTTCCGATATCTATTGATAAAAAGTATAAAATTCCG CTTTGGCATTTTAATTAGCTGAGTATCTATTAGTCGGGGGAACTCCACTATAGCATTCTATTTTC TTTTACACTTTAAACATATATAGTAGATAGTAACATGGTAAGTTCAGATTAGACATTTAGTCTCT GGTAACTCCTGAACTCGCGTCAGGCCACGTCTCTGGGTCCCACAC Right flanking sequence: Indices 662355 -- 662854 GAAAAGATAATGATAATTTTCATTTCGATATTTAGGTAAACATCCCTAGCTAACAAAATCTGTGG TTATAAACCATTTACTGGGTCTTCTAAACAAACTGAAAAATGTAATATCGCTATTTTTAATAAAA TGTTGTTTCTTGTTTAGCCCCTTATTTGCAGTCAAACTCACCGCATTTAAGTAGTTAATAAGACT AAGGCCCCCGTCCCACGAGTTTTCCTCCTCGCAGCTTATATTTAAAAGGGTTAAAGAGTGTGATT GTTCCAGTGTCTGCAATCCAATCGCGAAAACGTACACCGAATCGAACATTAGGGCTGGCTCTGAC TAAAGATTTGTAGAAACGCTTTTATTATAGTGTACTTACCACGTCATTTCTATTAAGCTTACCTC AAGAATGGTTGATTTTTTAATATGTAGATTCAAATAAGGTTTTTTAAATATATGGTGACTATACA ATCCGATATCCTTCAAGATTTGCTTTACCCCAACATCCGCAGTGT Found at i:663099 original size:5 final size:5 Alignment explanation
Indices: 663091--663103 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 663081 ATATATACAA 663091 ATGGT ATGGT ATG 1 ATGGT ATGGT ATG 663104 CGAATCCTAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.23, C:0.00, G:0.38, T:0.38 Consensus pattern (5 bp): ATGGT Left flanking sequence: Indices 662591 -- 663090 TTAAAAGGGTTAAAGAGTGTGATTGTTCCAGTGTCTGCAATCCAATCGCGAAAACGTACACCGAA TCGAACATTAGGGCTGGCTCTGACTAAAGATTTGTAGAAACGCTTTTATTATAGTGTACTTACCA CGTCATTTCTATTAAGCTTACCTCAAGAATGGTTGATTTTTTAATATGTAGATTCAAATAAGGTT TTTTAAATATATGGTGACTATACAATCCGATATCCTTCAAGATTTGCTTTACCCCAACATCCGCA GTGTCGACCAATCGAAACGATGTAATGTTCACGAAATTATATTTAAAGTCTTCCAGATCATAAGT TTCCAAATCGAAGCTTGTAAACAAGTAATGGTACTTGTATTCATTCATTTGTTGCTGCAATATCT ATAGTTTCGTTTAAAAAAAGCAAATGGATTTGAAAAGTATTAATATGTGTAAAATTCAAATAACA ACAATTACTACATTAATATAGACGGCATAAAATAAATATATACAA Right flanking sequence: Indices 663104 -- 663603 CGAATCCTAAGGCAATTTCTTTGACTATCAGATACCCGTGACGTAGCTTGCGGCACATCGATAGG CATTGGCAACCAAAACCAGAAAACAAATAAAATGAAAAACAAGAGAGAATTCCAGCTCCCCGACT ATCAGACACCCGTTACTCAGCCACATTTACAAATTTATGAAATTTGCAAGACTAATAAAAATATG AAAACATTTTTCAAAAGTGTGGGCGTGGGAGTTTTGTGCCGTTTGTGGGCGTTAGAGTTTGTGGG CGTTATATCAGGAATATATATACTTTATGTGGTCGGAAACGCCTCCTTCTGACTGTTACATACTT TTCAACGGATACCCTTTTACTCTACTCTAATCAAAAAAATCCTAATGAGTGTGGCTGCGAAGTTT TGTGCGGCTTGTGGCGATAAAGTAAAACAAAATCGTGTTTCTAGAATCTGCCAGTGCTAGCTTTT CGCAGATTGACTCGTACGGAACAAGAAGTTTACAGGTTCGGAAAC Found at i:663988 original size:5 final size:5 Alignment explanation
Indices: 663980--663995 Score: 25 Period size: 5 Copynumber: 3.4 Consensus size: 5 663970 TTAGCCCCGT 663980 TTCAA TTCAA -TCAA TT 1 TTCAA TTCAA TTCAA TT 663996 GTTACATGGG Statistics Matches: 10, Mismatches: 0, Indels: 2 0.83 0.00 0.17 Matches are distributed among these distances: 4 4 0.40 5 6 0.60 ACGTcount: A:0.38, C:0.19, G:0.00, T:0.44 Consensus pattern (5 bp): TTCAA Left flanking sequence: Indices 663480 -- 663979 TGGCTGCGAAGTTTTGTGCGGCTTGTGGCGATAAAGTAAAACAAAATCGTGTTTCTAGAATCTGC CAGTGCTAGCTTTTCGCAGATTGACTCGTACGGAACAAGAAGTTTACAGGTTCGGAAACGAAGTG TTTTTGTTACATTTTTTCAACGAATATAATATATTTTTTTAAAGTCTATAAATTTGCAGATTGCT GATTGTTGAAAGTCAGATCATATGCAGAGTACCTTTGTGTGGTTGCTTAGAGGCATAAAGCATTA TGTATCGCTTGTGATTGCGGTATACATACAAGGTGAGGCAGCATAACTTCCTTTTTTAAAATGCG AGCCAATCAGTTGGTTGATGTCATAGCGGAGCGCTAGTGGTCCCGTTCAAGAGGGTCTATTGAAA AGTTATGTTCCGACACGGTTCAATCGCCATCATGTGTTGGAATAGTGAGGAGCGTGCCTTTGCCG TTCAGGCCTACTTTTCAAGCCGGAATCGCTTTAATTTAGCCCCGT Right flanking sequence: Indices 663996 -- 664495 GTTACATGGGACTACATTCAGGCAAACTGCAAGTGCGACAAAGAACTGGAGAATAATTTTTCATG ATGATCTTCAATTTTGTTCGTATAAGATGGCGATAGTGCATTAACTTTCAGAACGTGACTATCTC AATTAGAGTCTCGTTACTCTATCTTAATAATGTCTCGTTACCATAAGAAAAAAAATGTAATGTAA AAACAAGTCGTTTTTAATAGATACCCTCAATATTAAAATGTTACTTACATTTTTCAACAATATGG AAATACCGTTCGAGTTTGTATCAATAATAATATTATGTATTTCCTTTCCTTTAAATTCGTTCAAT GCGGATACATATGAATCCCGAGAAACTTGTCGCATATGAACTTCTCCGTGAAATGACCGGGATAG CTGATGCAAGTTTATGATTCCTGTAACGAGTTTTTTATATATTACTCTTTATATTGACTGATACT AAGAGAGAAAGCTATAGTCCTGTTCCTAGATACCTGCTACTCCGC Found at i:664305 original size:5 final size:5 Alignment explanation
Indices: 664295--664307 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 664285 ATATTATGTA 664295 TTTCC TTTCC TTT 1 TTTCC TTTCC TTT 664308 AAATTCGTTC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69 Consensus pattern (5 bp): TTTCC Left flanking sequence: Indices 663795 -- 664294 TTAAAATGCGAGCCAATCAGTTGGTTGATGTCATAGCGGAGCGCTAGTGGTCCCGTTCAAGAGGG TCTATTGAAAAGTTATGTTCCGACACGGTTCAATCGCCATCATGTGTTGGAATAGTGAGGAGCGT GCCTTTGCCGTTCAGGCCTACTTTTCAAGCCGGAATCGCTTTAATTTAGCCCCGTTTCAATTCAA TCAATTGTTACATGGGACTACATTCAGGCAAACTGCAAGTGCGACAAAGAACTGGAGAATAATTT TTCATGATGATCTTCAATTTTGTTCGTATAAGATGGCGATAGTGCATTAACTTTCAGAACGTGAC TATCTCAATTAGAGTCTCGTTACTCTATCTTAATAATGTCTCGTTACCATAAGAAAAAAAATGTA ATGTAAAAACAAGTCGTTTTTAATAGATACCCTCAATATTAAAATGTTACTTACATTTTTCAACA ATATGGAAATACCGTTCGAGTTTGTATCAATAATAATATTATGTA Right flanking sequence: Indices 664308 -- 664807 AAATTCGTTCAATGCGGATACATATGAATCCCGAGAAACTTGTCGCATATGAACTTCTCCGTGAA ATGACCGGGATAGCTGATGCAAGTTTATGATTCCTGTAACGAGTTTTTTATATATTACTCTTTAT ATTGACTGATACTAAGAGAGAAAGCTATAGTCCTGTTCCTAGATACCTGCTACTCCGCTAGTGGG AAATCAATAATTAAATTAATAAAATTGGCGAGCGTTAGAGTGGGCCGATGTTTATAAAAATTAGT AAAACAATTTATGAACACCAAAACAAAAACAATATATAAAGTAGGCGTCGGCCATATATATTTGA CACATCGATAACAAAAAATTTAAATACATATATTAAAATGTAAAAATTGAGGCATTTTCTAAAAG TGTGGGTGTGGTGGGCGGTGTATGGGGGTTAAAGTGTGCGTGGATCCCTAGAATATTTTTAACTG GGAAGTTAATAGCCTTCGATTATACCAAATAGAATAATTCTAGTG Found at i:664598 original size:6 final size:6 Alignment explanation
Indices: 664587--664599 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 664577 TATGAACACC 664587 AAAACA AAAACA A 1 AAAACA AAAACA A 664600 TATATAAAGT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00 Consensus pattern (6 bp): AAAACA Left flanking sequence: Indices 664087 -- 664586 ATGGCGATAGTGCATTAACTTTCAGAACGTGACTATCTCAATTAGAGTCTCGTTACTCTATCTTA ATAATGTCTCGTTACCATAAGAAAAAAAATGTAATGTAAAAACAAGTCGTTTTTAATAGATACCC TCAATATTAAAATGTTACTTACATTTTTCAACAATATGGAAATACCGTTCGAGTTTGTATCAATA ATAATATTATGTATTTCCTTTCCTTTAAATTCGTTCAATGCGGATACATATGAATCCCGAGAAAC TTGTCGCATATGAACTTCTCCGTGAAATGACCGGGATAGCTGATGCAAGTTTATGATTCCTGTAA CGAGTTTTTTATATATTACTCTTTATATTGACTGATACTAAGAGAGAAAGCTATAGTCCTGTTCC TAGATACCTGCTACTCCGCTAGTGGGAAATCAATAATTAAATTAATAAAATTGGCGAGCGTTAGA GTGGGCCGATGTTTATAAAAATTAGTAAAACAATTTATGAACACC Right flanking sequence: Indices 664600 -- 665099 TATATAAAGTAGGCGTCGGCCATATATATTTGACACATCGATAACAAAAAATTTAAATACATATA TTAAAATGTAAAAATTGAGGCATTTTCTAAAAGTGTGGGTGTGGTGGGCGGTGTATGGGGGTTAA AGTGTGCGTGGATCCCTAGAATATTTTTAACTGGGAAGTTAATAGCCTTCGATTATACCAAATAG AATAATTCTAGTGTTATACATTATATATCTATCTAGCTATATATATATAGTTAGTTTCATAGGAG TTTCAAGTGTTTTCAATGTTCCAAAAAGTGTAAAAGCTTAATTATAGCTTTTAATATGTTATATT ATAAATAATAAATAAAATACGTTTGAAAAAAAATTTAAACATTCAAATGAAAAAGCCTTTTCAAT GACTGAAAGCACAATTCTATATCCACAGGTGTCTGAATACCTGAACTTTATTGGTGGCCAAAATT AAGCCTTTTCATTTTTAAAAATTGCCGATAATTTTGGTTTTGTTC Found at i:664938 original size:4 final size:4 Alignment explanation
Indices: 664925--664940 Score: 25 Period size: 4 Copynumber: 4.2 Consensus size: 4 664915 ATGTTATATT 664925 ATAA AT-A ATAA ATAA A 1 ATAA ATAA ATAA ATAA A 664941 ATACGTTTGA Statistics Matches: 11, Mismatches: 0, Indels: 2 0.85 0.00 0.15 Matches are distributed among these distances: 3 3 0.27 4 8 0.73 ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25 Consensus pattern (4 bp): ATAA Left flanking sequence: Indices 664425 -- 664924 TATTACTCTTTATATTGACTGATACTAAGAGAGAAAGCTATAGTCCTGTTCCTAGATACCTGCTA CTCCGCTAGTGGGAAATCAATAATTAAATTAATAAAATTGGCGAGCGTTAGAGTGGGCCGATGTT TATAAAAATTAGTAAAACAATTTATGAACACCAAAACAAAAACAATATATAAAGTAGGCGTCGGC CATATATATTTGACACATCGATAACAAAAAATTTAAATACATATATTAAAATGTAAAAATTGAGG CATTTTCTAAAAGTGTGGGTGTGGTGGGCGGTGTATGGGGGTTAAAGTGTGCGTGGATCCCTAGA ATATTTTTAACTGGGAAGTTAATAGCCTTCGATTATACCAAATAGAATAATTCTAGTGTTATACA TTATATATCTATCTAGCTATATATATATAGTTAGTTTCATAGGAGTTTCAAGTGTTTTCAATGTT CCAAAAAGTGTAAAAGCTTAATTATAGCTTTTAATATGTTATATT Right flanking sequence: Indices 664941 -- 665440 ATACGTTTGAAAAAAAATTTAAACATTCAAATGAAAAAGCCTTTTCAATGACTGAAAGCACAATT CTATATCCACAGGTGTCTGAATACCTGAACTTTATTGGTGGCCAAAATTAAGCCTTTTCATTTTT AAAAATTGCCGATAATTTTGGTTTTGTTCGTAGAATATTTTTTTAACGGCTCATTACAACTCGAC AATCGTATGCGTAGCTTTTTGTAAATGCTTTTTATGAGGGAGGGATCCCCAAACAACACCAATTT TTAAAGTTCTGTCTTGCACAGTTTCACAGCTTTCTCCTAAGCCTTATATTTCTTAATGTTTTTAA TTTTTTTAATTTGTATGCAAAACCCTAAGTTTTTGTTTTGTTTTTGAAACACTCGTTAACATCAG AGAACCACAGAAAAATGTAATTTCTTCTTGTATATATAGTATTCGACTAAGCTCACTTTCTTGGT TTTCTCAGGGATTTTTTAATAACTTTAATTTGTTAATTTGTTAAA Found at i:665306 original size:5 final size:5 Alignment explanation
Indices: 665296--665309 Score: 28 Period size: 5 Copynumber: 2.8 Consensus size: 5 665286 AACCCTAAGT 665296 TTTTG TTTTG TTTT 1 TTTTG TTTTG TTTT 665310 TGAAACACTC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 9 1.00 ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86 Consensus pattern (5 bp): TTTTG Left flanking sequence: Indices 664796 -- 665295 ATAATTCTAGTGTTATACATTATATATCTATCTAGCTATATATATATAGTTAGTTTCATAGGAGT TTCAAGTGTTTTCAATGTTCCAAAAAGTGTAAAAGCTTAATTATAGCTTTTAATATGTTATATTA TAAATAATAAATAAAATACGTTTGAAAAAAAATTTAAACATTCAAATGAAAAAGCCTTTTCAATG ACTGAAAGCACAATTCTATATCCACAGGTGTCTGAATACCTGAACTTTATTGGTGGCCAAAATTA AGCCTTTTCATTTTTAAAAATTGCCGATAATTTTGGTTTTGTTCGTAGAATATTTTTTTAACGGC TCATTACAACTCGACAATCGTATGCGTAGCTTTTTGTAAATGCTTTTTATGAGGGAGGGATCCCC AAACAACACCAATTTTTAAAGTTCTGTCTTGCACAGTTTCACAGCTTTCTCCTAAGCCTTATATT TCTTAATGTTTTTAATTTTTTTAATTTGTATGCAAAACCCTAAGT Right flanking sequence: Indices 665310 -- 665809 TGAAACACTCGTTAACATCAGAGAACCACAGAAAAATGTAATTTCTTCTTGTATATATAGTATTC GACTAAGCTCACTTTCTTGGTTTTCTCAGGGATTTTTTAATAACTTTAATTTGTTAATTTGTTAA ATAAAAACAAGAGAGAACGCCACAGTCGAGTTCCCCGTCTATCAGAAACCGTTACTCACCTAGCC CAAACCGATAGTTTTTAACATTTTTCAGGAGTATCCGTAGAAATTGGGAAAATATTAAAAAAATT GGCCGTTTTTGGGTGTGTGCGTAGCAACTTGGGTGAACAAACCTGTTTATGTCTTTAGAAACTGT ATGCTTTATCTCAACCTTCTAGCTTGTATAGATCCTAAGATATCAACGTTCATAGACGGACAGAC AGACGGATATATATGGCCAGTTCGACTCGGATATTGATCCCGATCAAGAATGCATGTATACACTT TATGTGGTCGAAAGCGCTTACTTCTGCCCGTTGCTTACGTTACTA Found at i:665310 original size:6 final size:6 Alignment explanation
Indices: 665294--665311 Score: 29 Period size: 6 Copynumber: 3.2 Consensus size: 6 665284 AAAACCCTAA 665294 GTTTTT G-TTTT GTTTTT G 1 GTTTTT GTTTTT GTTTTT G 665312 AAACACTCGT Statistics Matches: 11, Mismatches: 0, Indels: 2 0.85 0.00 0.15 Matches are distributed among these distances: 5 5 0.45 6 6 0.55 ACGTcount: A:0.00, C:0.00, G:0.22, T:0.78 Consensus pattern (6 bp): GTTTTT Left flanking sequence: Indices 664794 -- 665293 GAATAATTCTAGTGTTATACATTATATATCTATCTAGCTATATATATATAGTTAGTTTCATAGGA GTTTCAAGTGTTTTCAATGTTCCAAAAAGTGTAAAAGCTTAATTATAGCTTTTAATATGTTATAT TATAAATAATAAATAAAATACGTTTGAAAAAAAATTTAAACATTCAAATGAAAAAGCCTTTTCAA TGACTGAAAGCACAATTCTATATCCACAGGTGTCTGAATACCTGAACTTTATTGGTGGCCAAAAT TAAGCCTTTTCATTTTTAAAAATTGCCGATAATTTTGGTTTTGTTCGTAGAATATTTTTTTAACG GCTCATTACAACTCGACAATCGTATGCGTAGCTTTTTGTAAATGCTTTTTATGAGGGAGGGATCC CCAAACAACACCAATTTTTAAAGTTCTGTCTTGCACAGTTTCACAGCTTTCTCCTAAGCCTTATA TTTCTTAATGTTTTTAATTTTTTTAATTTGTATGCAAAACCCTAA Right flanking sequence: Indices 665312 -- 665811 AAACACTCGTTAACATCAGAGAACCACAGAAAAATGTAATTTCTTCTTGTATATATAGTATTCGA CTAAGCTCACTTTCTTGGTTTTCTCAGGGATTTTTTAATAACTTTAATTTGTTAATTTGTTAAAT AAAAACAAGAGAGAACGCCACAGTCGAGTTCCCCGTCTATCAGAAACCGTTACTCACCTAGCCCA AACCGATAGTTTTTAACATTTTTCAGGAGTATCCGTAGAAATTGGGAAAATATTAAAAAAATTGG CCGTTTTTGGGTGTGTGCGTAGCAACTTGGGTGAACAAACCTGTTTATGTCTTTAGAAACTGTAT GCTTTATCTCAACCTTCTAGCTTGTATAGATCCTAAGATATCAACGTTCATAGACGGACAGACAG ACGGATATATATGGCCAGTTCGACTCGGATATTGATCCCGATCAAGAATGCATGTATACACTTTA TGTGGTCGAAAGCGCTTACTTCTGCCCGTTGCTTACGTTACTACT Found at i:665702 original size:4 final size:4 Alignment explanation
Indices: 665688--665703 Score: 25 Period size: 4 Copynumber: 4.0 Consensus size: 4 665678 CAACGTTCAT * 665688 AGAC GGAC AGAC AGAC 1 AGAC AGAC AGAC AGAC 665704 GGATATATAT Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 4 10 1.00 ACGTcount: A:0.44, C:0.25, G:0.31, T:0.00 Consensus pattern (4 bp): AGAC Left flanking sequence: Indices 665188 -- 665687 ACAACACCAATTTTTAAAGTTCTGTCTTGCACAGTTTCACAGCTTTCTCCTAAGCCTTATATTTC TTAATGTTTTTAATTTTTTTAATTTGTATGCAAAACCCTAAGTTTTTGTTTTGTTTTTGAAACAC TCGTTAACATCAGAGAACCACAGAAAAATGTAATTTCTTCTTGTATATATAGTATTCGACTAAGC TCACTTTCTTGGTTTTCTCAGGGATTTTTTAATAACTTTAATTTGTTAATTTGTTAAATAAAAAC AAGAGAGAACGCCACAGTCGAGTTCCCCGTCTATCAGAAACCGTTACTCACCTAGCCCAAACCGA TAGTTTTTAACATTTTTCAGGAGTATCCGTAGAAATTGGGAAAATATTAAAAAAATTGGCCGTTT TTGGGTGTGTGCGTAGCAACTTGGGTGAACAAACCTGTTTATGTCTTTAGAAACTGTATGCTTTA TCTCAACCTTCTAGCTTGTATAGATCCTAAGATATCAACGTTCAT Right flanking sequence: Indices 665704 -- 666203 GGATATATATGGCCAGTTCGACTCGGATATTGATCCCGATCAAGAATGCATGTATACACTTTATG TGGTCGAAAGCGCTTACTTCTGCCCGTTGCTTACGTTACTACTATGACTGACGTGTATAAATATT GTTATATCTTATGTAAATTAATATAAATTTTATAATCAATGAATTCTTGAAGGGAATTTAAATGT TTTCCATATTAAATTCAAGATCGTTTAATTGATCGAAAGTAGAACACTTATTCTTAATGTTAAAT ATAAAAGGTGTTGGGTTTTCTAGTACTTTAAAGACAAAAACGATTAAATGATGAGGATTCTCGCT ACAACTACGTTAAGCAAGTGTGCCACCGAAGATTTCCAAGCCCATTATAACGCTCACAGGCTACC AAAAACTTTCTTGGCCCCACTTTTGTAAATTTTTCTTGGCATAATCTTAACGGCTCGGCCACAAA AACTGAATTAAACATTTGGATTTAACAACTGGGGACTAACCATTT Found at i:667695 original size:4 final size:4 Alignment explanation
Indices: 667686--667698 Score: 26 Period size: 4 Copynumber: 3.2 Consensus size: 4 667676 CATTACAGTA 667686 AATT AATT AATT A 1 AATT AATT AATT A 667699 GGATGTGGTT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 9 1.00 ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46 Consensus pattern (4 bp): AATT Left flanking sequence: Indices 667186 -- 667685 AGTTTTCATATTAGGGGTAAGGGACGAAGCGAAATGAAAATAATGGATTCCTCTTTGAAACGGCA CGCGCCCTTCCAAATCGCGAATTTTATTCAGGAGTATTTAAGAAATTGGTATATCCGAATTCAGA CAATTGATTAATTTTTCAAATAACAACAAATAAAACTCACAAAAGTTATTATTTGGAATAAATTA AGAATGTGAATGTAACTGCAGGGATTCGCCAAATGAAACGATTTCTAACACTGTGTACCTAATGG TCATTTCCTTTTTTATGTTATATGTACTCATATATATTGTAAGTAACTGAGTGCAGCTAAGCAAA AAACCCCTCTTTCGAACACTCTGATCAGCACAATTTCTTGTAAATTCTTCTAAATTCTAAAGCTT ATTCCGCAGTTTATTAAAACTTCTTAATGTAAAACTATTAGTTGTTGCTTTTGATCCTCATATTT CTCATACCAACTATTTTTTAAGTTAATGTTAAGGTCATTACAGTA Right flanking sequence: Indices 667699 -- 668198 GGATGTGGTTTTCTGACACTTTGGGCTGCTTTTCACGAACTGAAGCACTCCAAAAGAGTATTCAA AGGCAATTACTACAGGGTGCGGCAGCATAACTTCCTTTTTTAAAATGCGCGCCAATCAGTTGGTT GATGTCATAGAGGGGCTACTGTAAAGTTTTGTTCCGACACGGTTCAGTCGCCATCATGCGTTGGA ATAGTGAGGAGCTTGCCTTTGCCGTTGAGGCCTACCTTTCAAGCCAGTGTTCGGTTATTAAAACA CAGCGTGCAATTCGGAATCGCTTTAATTTAGCCCCGTTTGCTCTCGTCCCGGACCGCAAATCAAT TGTTACGTGGGTCACTACATTCAGGCAAACTGCAAGTGCGACAAAGAACTGGAGTCCCTCGACCG ATCGTTCTGTGAGAATATTCTTCATGATGTTCTTCAACTTCATTCGTATAAGACGGCGATAGTGC ATTAACTTTCAGAACGTGACTATCTCAATTAGAGGTGATTTGGAA Found at i:668463 original size:4 final size:4 Alignment explanation
Indices: 668454--668466 Score: 26 Period size: 4 Copynumber: 3.2 Consensus size: 4 668444 TACATTATAA 668454 AAAT AAAT AAAT A 1 AAAT AAAT AAAT A 668467 TTTTCCGATG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 9 1.00 ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23 Consensus pattern (4 bp): AAAT Left flanking sequence: Indices 667954 -- 668453 AAACACAGCGTGCAATTCGGAATCGCTTTAATTTAGCCCCGTTTGCTCTCGTCCCGGACCGCAAA TCAATTGTTACGTGGGTCACTACATTCAGGCAAACTGCAAGTGCGACAAAGAACTGGAGTCCCTC GACCGATCGTTCTGTGAGAATATTCTTCATGATGTTCTTCAACTTCATTCGTATAAGACGGCGAT AGTGCATTAACTTTCAGAACGTGACTATCTCAATTAGAGGTGATTTGGAATGGCCGACTCTCCCG ATCTGTCCCCTCGTGATTTTTGAAATCCCGTGTTTGTGTGGACCGTCCAAGAACCCTACAAGATT TGAAAACCAACATCCAAAAAGAAATTGCCAACATAACACCTGCTATGCTAACCAGAGTAATGACA AACGCCAGAAATCGGCTTACGCAATGTATGATGAATGGGGGACGTCACCTATAAGATTTCATCTT CAAAACAATATAAATAAAAACTTTAGACATGTACCTACATTATAA Right flanking sequence: Indices 668467 -- 668966 TTTTCCGATGCCTACAATAGTTTTCATTGAGTTCTGAAAAAAGGAAATTATGCTGCTGCACCCTG TATATATTAAAAAAACGAAAGAGAATTCCCCGACTGTCAGAAATCCGTTACTCATATACCTGGCA TATCAGTAGAAATTTGAGAAAATTAAAACAAATTAGAAAATGTATGAAAATCGTGGGCGCGTCAG ATAAGGGCGGTTTTGTGGACGCTAATGTGGGAGTGGCAAAATGTTTTGTTTTTTGCATATAGATG GAAATTTACGGAACTAATACATAAATCATAAAAATTTCAAAACATTTGGGCGTAAAAGTTTGTGT TGTGTGTGGGCGTTACAAGGTTTGTGAACATGGGCCAACTTGCGCTGCGTCTGTCTTTAGAATCA GGCTTAACAGCTATGCCATGCCTTTTGAACCACTGAAGTGAGTCGTGTTTTTTTTTACGCATTCT TAAAGTATTTGCTTTCAATACCAAAAAACGAAAATGAAATGTAAT Found at