TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_X assembled 2004-3-18 md5checksum:d304f6c7f10939bacf40e33958147342 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 22224390 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Warning! 8514 characters in sequence are not A, C, G, or T Found at i: i:11765662 original size:7 final size:7 Alignment explanation
Indices: 11765650--11765663 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11765640 TCTCACATCC 11765650 TATATTT 1 TATATTT 11765657 TATATTT 1 TATATTT 11765664 CTTGTTGCTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71 Consensus pattern (7 bp): TATATTT Left flanking sequence: Indices 11765150 -- 11765649 GCATATATTGAAAAGGTATAAAAATCTACTCAATGCGCAAGTAAAAAACACAAGATGTGCAATTT TTGTGTTATTTTTTTGACATTTATTTTCTTCTTGTTTTTTTTTTGTTTTTATTATGGTATTCCTT TACATTATGTAAAATAAGAAAGTATTAATAGTTTTATTAACAAATTTGTTGAAGGCAGGTATTTA TGTTATTATATGTTTATGTATGTATATCTTGTATATAAATTACGAGTCATCTTTATAATTACATA ATTATTAAATGTAGTTTAATTATCTCTAGCGTATCTTAGTAATTAATTTAACTGCTTTATTCACT TAGTATATTAAATTAAGATATTTATATTTATATTTATGGTTTCTCTCATATATTTATGTATATGT ATTATCATTACAATTTAGCCGTAACAGTTACATTCTTCTAATTTTAAACTAATTTCATTATTATT AATTTTGTTTCCTTTCCTATTCGCGTATCATCCCCTCTCACATCC Right flanking sequence: Indices 11765664 -- 11766163 CTTGTTGCTTTGTAAAAAAAAGTCAGATCTACTTACATATATGTATTTCCTTTTTATTTTTGCTT GTTTCCGTTCTTATTTTTTGTTAAGTTTTCTTCTTTATTGTTTTTTTTTTTTTTTTGTTTCATGT AACCGCTCACACCAGACAGTAAACAAATCACAAAATATACAGTCGAATCGTTAAGTTAGGGTTCA ATGGTTAAATGTTTGCCATTTCAGACAGAAGTAAGCCACCTACGACATGAGTTAAGTTTAACAAC ACAGGAGCGCGGACCGTTTGGGTCACCTCAATTTTTGGATTTGAATTCAATTTTGAATTTTTTCG AATTGAGGATTGGCTCGGCAGCAGCCTTGTGTGCGCACTTCATCATGGTTGCATGCATATGTATA ATGACTCTGAATCTGGATCTTAATCTGGATCGGGCAATGCTTTCCATGGCATCTCCATGTGGCGG GGGAATGCAAGGATCTGTAGCTGGAAGAACAATCGATCGCAGCAT Found at i:11765869 original size:8 final size:8 Alignment explanation
Indices: 11765853--11765869 Score: 27 Period size: 8 Copynumber: 2.1 Consensus size: 8 11765843 GTTAAGTTAG * 11765853 GGTTCAAT 1 GGTTAAAT 11765861 GGTTAAAT 1 GGTTAAAT 11765869 G 1 G 11765870 TTTGCCATTT Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.29, C:0.06, G:0.29, T:0.35 Consensus pattern (8 bp): GGTTAAAT Left flanking sequence: Indices 11765353 -- 11765852 TATGTTTATGTATGTATATCTTGTATATAAATTACGAGTCATCTTTATAATTACATAATTATTAA ATGTAGTTTAATTATCTCTAGCGTATCTTAGTAATTAATTTAACTGCTTTATTCACTTAGTATAT TAAATTAAGATATTTATATTTATATTTATGGTTTCTCTCATATATTTATGTATATGTATTATCAT TACAATTTAGCCGTAACAGTTACATTCTTCTAATTTTAAACTAATTTCATTATTATTAATTTTGT TTCCTTTCCTATTCGCGTATCATCCCCTCTCACATCCTATATTTTATATTTCTTGTTGCTTTGTA AAAAAAAGTCAGATCTACTTACATATATGTATTTCCTTTTTATTTTTGCTTGTTTCCGTTCTTAT TTTTTGTTAAGTTTTCTTCTTTATTGTTTTTTTTTTTTTTTTGTTTCATGTAACCGCTCACACCA GACAGTAAACAAATCACAAAATATACAGTCGAATCGTTAAGTTAG Right flanking sequence: Indices 11765870 -- 11766369 TTTGCCATTTCAGACAGAAGTAAGCCACCTACGACATGAGTTAAGTTTAACAACACAGGAGCGCG GACCGTTTGGGTCACCTCAATTTTTGGATTTGAATTCAATTTTGAATTTTTTCGAATTGAGGATT GGCTCGGCAGCAGCCTTGTGTGCGCACTTCATCATGGTTGCATGCATATGTATAATGACTCTGAA TCTGGATCTTAATCTGGATCGGGCAATGCTTTCCATGGCATCTCCATGTGGCGGGGGAATGCAAG GATCTGTAGCTGGAAGAACAATCGATCGCAGCATTGTGTAACAATATATATTTTGGTTTTAATTT TGTAAGTAAATGGCGGGACATGGTGCCCGAATTGTTCTTCCCCGGAAATATGTGATGTTTCGTGT ATCGGATCCCTGCACTTGGCACCTAACCATACAAGTAGGAGTACATAAAGTTGGGCAGAGTTCGC GGTCGGCCAGCTGGGAGCCTTTTTTTTTCGAAGGACGAAGCGAAG Found at i:11766492 original size:7 final size:7 Alignment explanation
Indices: 11766482--11766497 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 11766472 TGGATAAGCG 11766482 ATACTGA 1 ATACTGA 11766489 ATACTGA 1 ATACTGA 11766496 AT 1 AT 11766498 TCATATCAGT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.44, C:0.12, G:0.12, T:0.31 Consensus pattern (7 bp): ATACTGA Left flanking sequence: Indices 11765982 -- 11766481 TTTTTCGAATTGAGGATTGGCTCGGCAGCAGCCTTGTGTGCGCACTTCATCATGGTTGCATGCAT ATGTATAATGACTCTGAATCTGGATCTTAATCTGGATCGGGCAATGCTTTCCATGGCATCTCCAT GTGGCGGGGGAATGCAAGGATCTGTAGCTGGAAGAACAATCGATCGCAGCATTGTGTAACAATAT ATATTTTGGTTTTAATTTTGTAAGTAAATGGCGGGACATGGTGCCCGAATTGTTCTTCCCCGGAA ATATGTGATGTTTCGTGTATCGGATCCCTGCACTTGGCACCTAACCATACAAGTAGGAGTACATA AAGTTGGGCAGAGTTCGCGGTCGGCCAGCTGGGAGCCTTTTTTTTTCGAAGGACGAAGCGAAGAT TGTGAGCATTAGAAGCGAATCGAATGGAATCGAGTTGAAATGGTCACGAGCTTGCCAATATTTTA GCTAACTAAATATTTCCTCTATAGGCATCATGAACTGGATAAGCG Right flanking sequence: Indices 11766498 -- 11766997 TCATATCAGTGAACTAACTTCATACTTTGTACTCATTTCTATTTTTTTTTCTGTTTTTTGGTTTT GTTTTTTCTTGTATTTTTTTTTATTTATTTTCTTTGGTGTTTTTTTTTTTTTTTTGTATCATTTA TCTATATTTTGTTTAGTTTTGGCATCGGGGCAATGATTCAGTAGTAGTAATTGAGCTAATGAGCC CTAAGCTGCCCTTCCAAGAACTCTACTGTTTTGTGGGGGATATCGCTAGTTATAATTCGAATGTT AATGTTAAGCAAGCGGTGCAAAATGAAGGTAAAAAATCGGATCTTAGCCTAGGACTGAGGACTTG AAACATTTGCCACGTGGACAAACTTTTACTGGAAGTAGTCAAAAGTGAACCTCGGAAATACAACG TGCAACGTGTATACAATTAATTAATTAATTAATTAATTCATTGGAGAGTGAACTTTTATATCGGC GATCTTTGTTCTATGTTTTTCCTTAGCGTTGGAGTTCCCATTTTA Found at i:11766895 original size:7 final size:7 Alignment explanation
Indices: 11766883--11766896 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 11766873 CTCGGAAATA 11766883 CAACGTG 1 CAACGTG 11766890 CAACGTG 1 CAACGTG 11766897 TATACAATTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.29, G:0.29, T:0.14 Consensus pattern (7 bp): CAACGTG Left flanking sequence: Indices 11766383 -- 11766882 GAAGCGAATCGAATGGAATCGAGTTGAAATGGTCACGAGCTTGCCAATATTTTAGCTAACTAAAT ATTTCCTCTATAGGCATCATGAACTGGATAAGCGATACTGAATACTGAATTCATATCAGTGAACT AACTTCATACTTTGTACTCATTTCTATTTTTTTTTCTGTTTTTTGGTTTTGTTTTTTCTTGTATT TTTTTTTATTTATTTTCTTTGGTGTTTTTTTTTTTTTTTTGTATCATTTATCTATATTTTGTTTA GTTTTGGCATCGGGGCAATGATTCAGTAGTAGTAATTGAGCTAATGAGCCCTAAGCTGCCCTTCC AAGAACTCTACTGTTTTGTGGGGGATATCGCTAGTTATAATTCGAATGTTAATGTTAAGCAAGCG GTGCAAAATGAAGGTAAAAAATCGGATCTTAGCCTAGGACTGAGGACTTGAAACATTTGCCACGT GGACAAACTTTTACTGGAAGTAGTCAAAAGTGAACCTCGGAAATA Right flanking sequence: Indices 11766897 -- 11767396 TATACAATTAATTAATTAATTAATTAATTCATTGGAGAGTGAACTTTTATATCGGCGATCTTTGT TCTATGTTTTTCCTTAGCGTTGGAGTTCCCATTTTATTTGATACTAGTTATAAACTATTGTATAT TTATCTATGTAGGCGTGTATATATATATATATATATATTTGATGTATGTTTGTCAGCATCCGTAA TTAAGATAATTATAGAAGAATACGCTTGTCGGTTACCTTTCTCACACTCCACTCTCCATTCTCTT TGTCTAGATTTTAGAAAATCGCCATAAAATCAAAAACCCAGGGTTTTCAAAAAAAAAAATTATTT TTCAAAATTATATCAACAAGACATATGATGACCGTGTCCTGTAAAATAAAAAAATCGTATTCACA CAATGATTTTTGCTATTACAAACTAATGGCGAACGAAACCTTCAAATTAAGTATAAAAAAAGGAA CTGAAAAATCCGCTTTTGAAACTTGGGAAATTTTCGGAGATTTTT Found at i:11767154 original size:7 final size:7 Alignment explanation
Indices: 11767134--11767154 Score: 28 Period size: 7 Copynumber: 3.0 Consensus size: 7 11767124 TTACCTTTCT * 11767134 CACACTC 1 CACTCTC 11767141 CACTCTC 1 CACTCTC * 11767148 CATTCTC 1 CACTCTC 11767155 TTTGTCTAGA Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.19, C:0.52, G:0.00, T:0.29 Consensus pattern (7 bp): CACTCTC Left flanking sequence: Indices 11766634 -- 11767133 TTTTGTTTAGTTTTGGCATCGGGGCAATGATTCAGTAGTAGTAATTGAGCTAATGAGCCCTAAGC TGCCCTTCCAAGAACTCTACTGTTTTGTGGGGGATATCGCTAGTTATAATTCGAATGTTAATGTT AAGCAAGCGGTGCAAAATGAAGGTAAAAAATCGGATCTTAGCCTAGGACTGAGGACTTGAAACAT TTGCCACGTGGACAAACTTTTACTGGAAGTAGTCAAAAGTGAACCTCGGAAATACAACGTGCAAC GTGTATACAATTAATTAATTAATTAATTAATTCATTGGAGAGTGAACTTTTATATCGGCGATCTT TGTTCTATGTTTTTCCTTAGCGTTGGAGTTCCCATTTTATTTGATACTAGTTATAAACTATTGTA TATTTATCTATGTAGGCGTGTATATATATATATATATATATTTGATGTATGTTTGTCAGCATCCG TAATTAAGATAATTATAGAAGAATACGCTTGTCGGTTACCTTTCT Right flanking sequence: Indices 11767155 -- 11767654 TTTGTCTAGATTTTAGAAAATCGCCATAAAATCAAAAACCCAGGGTTTTCAAAAAAAAAAATTAT TTTTCAAAATTATATCAACAAGACATATGATGACCGTGTCCTGTAAAATAAAAAAATCGTATTCA CACAATGATTTTTGCTATTACAAACTAATGGCGAACGAAACCTTCAAATTAAGTATAAAAAAAGG AACTGAAAAATCCGCTTTTGAAACTTGGGAAATTTTCGGAGATTTTTAAAACTTACGGCTCACAG CCAAAGACATTATAAAATGGCGAGTTTCTAAGTTAAATGGCGATCTTGACCTTTTTTGAGTGTAT ATTTGGGTTAATCGTTTCTAGGTTAGTCGTTTTCCCTATTCAGTATTGCTCAGTTAATATTTAAG TATCGTACACAGCTAAAGTCAGCTCAGTTAAGTTAGTTTAGGGCAAGTGTTTCTGTTTGCTAAAT GTTTTTGTTAAAGTTTTTTTTTTTTTCTTTTTACTTTCCGTATGC Found at i:11767646 original size:7 final size:7 Alignment explanation
Indices: 11767630--11767646 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 11767620 AAGTTTTTTT * 11767630 TTTTTTC 1 TTTTTAC 11767637 TTTTTAC 1 TTTTTAC 11767644 TTT 1 TTT 11767647 CCGTATGCAC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.06, C:0.12, G:0.00, T:0.82 Consensus pattern (7 bp): TTTTTAC Left flanking sequence: Indices 11767130 -- 11767629 TTCTCACACTCCACTCTCCATTCTCTTTGTCTAGATTTTAGAAAATCGCCATAAAATCAAAAACC CAGGGTTTTCAAAAAAAAAAATTATTTTTCAAAATTATATCAACAAGACATATGATGACCGTGTC CTGTAAAATAAAAAAATCGTATTCACACAATGATTTTTGCTATTACAAACTAATGGCGAACGAAA CCTTCAAATTAAGTATAAAAAAAGGAACTGAAAAATCCGCTTTTGAAACTTGGGAAATTTTCGGA GATTTTTAAAACTTACGGCTCACAGCCAAAGACATTATAAAATGGCGAGTTTCTAAGTTAAATGG CGATCTTGACCTTTTTTGAGTGTATATTTGGGTTAATCGTTTCTAGGTTAGTCGTTTTCCCTATT CAGTATTGCTCAGTTAATATTTAAGTATCGTACACAGCTAAAGTCAGCTCAGTTAAGTTAGTTTA GGGCAAGTGTTTCTGTTTGCTAAATGTTTTTGTTAAAGTTTTTTT Right flanking sequence: Indices 11767647 -- 11768146 CCGTATGCACTCGACGCTAGTCATCGTCATATTCGTAATGGTAAGTTCATTTGCTGTGTAAATTC GCATTACTGCTCAGCTGCTATAATTATTTACTTAAGTTATGGATTCTTTTCTTTAAATTACAATT ATTGTGCGCTCTTCGATATCCCGTCGTCCAACATGTACGATTCGTCTATCTATACACATGATGAC TGCATTTTTTTTTGGTAGTGAGTTGGAGGGGCTGTGTGCATGGCTATAGTATATTTGAATACATT ACGTTTGGTGTGCCATGAGCTCTGCATTTTTACACATTATACACATTCAATTCAATTCGAGTATG AGGAGTCGGAGGTGTATATATTATATCTACACATGTTTTTGTTTACGTTAAGGATGCTCGATTGT GAGAACAATGACTTGCTTGCTTGTCATTTATAAATACATATGGACATCGAGTTCTTTCAACTGAT CGGAAAGTTTGCGAGGAGCTAATTTCAGCATACGAAACGCATTAA Found at i:11768183 original size:7 final size:7 Alignment explanation
Indices: 11768168--11768183 Score: 25 Period size: 7 Copynumber: 2.3 Consensus size: 7 11768158 ACCTCTCGTC * 11768168 GATTGCA 1 GATTACA 11768175 GATTACA 1 GATTACA 11768182 GA 1 GA 11768184 GTAACTATGA Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.38, C:0.12, G:0.25, T:0.25 Consensus pattern (7 bp): GATTACA Left flanking sequence: Indices 11767668 -- 11768167 CATCGTCATATTCGTAATGGTAAGTTCATTTGCTGTGTAAATTCGCATTACTGCTCAGCTGCTAT AATTATTTACTTAAGTTATGGATTCTTTTCTTTAAATTACAATTATTGTGCGCTCTTCGATATCC CGTCGTCCAACATGTACGATTCGTCTATCTATACACATGATGACTGCATTTTTTTTTGGTAGTGA GTTGGAGGGGCTGTGTGCATGGCTATAGTATATTTGAATACATTACGTTTGGTGTGCCATGAGCT CTGCATTTTTACACATTATACACATTCAATTCAATTCGAGTATGAGGAGTCGGAGGTGTATATAT TATATCTACACATGTTTTTGTTTACGTTAAGGATGCTCGATTGTGAGAACAATGACTTGCTTGCT TGTCATTTATAAATACATATGGACATCGAGTTCTTTCAACTGATCGGAAAGTTTGCGAGGAGCTA ATTTCAGCATACGAAACGCATTAATAGAAGCATAAACCTCTCGTC Right flanking sequence: Indices 11768184 -- 11768683 GTAACTATGAAAACAACGTTTCATTCGCTAAGGCAAATATGTATGATAAACAAGCTATTGTAAGT TAGCTAGAGTCTGTATAAACAAATGGCACTGAATGATGCTTACTTTACACAGATACATGCTTTTG GTCATAATTGAGTTATTTGGATCTAGTTTTGGACTTGGATTTGAATTCAATATGCTGGACTTGCC ATGTTGCGTGGACTTCTACTAATCGTGGAAAAAAAGTATCCGCTCGAGTATAAATACACAACTGA ATGTTAAAACCGTAGAGGACTAAATTGCGCTGAATTTTTGCTAATATTCGCTATAGGGATTCGGT CTGATGAAGGTATTTATAATAGTAGTCGTAGGTAAATATTTTACATACAAAAGAATAAAATAAAT AACAATTTCATATCTACAATTATCTGGTATGTACATTGAGTAAATAAATAAATGTCGCATTTAAA TACACATAATTGAAGTACTAACTTTTAATATAAACAAGTCAAAAA Found at i:11768496 original size:10 final size:10 Alignment explanation
Indices: 11768471--11768496 Score: 29 Period size: 10 Copynumber: 2.5 Consensus size: 10 11768461 GACTAAATTG * 11768471 CGCTGAATTTT 1 CGCT-AATATT * 11768482 TGCTAATATT 1 CGCTAATATT 11768492 CGCTA 1 CGCTA 11768497 TAGGGATTCG Statistics Matches: 12, Mismatches: 3, Indels: 1 0.75 0.19 0.06 Matches are distributed among these distances: 10 9 0.75 11 3 0.25 ACGTcount: A:0.23, C:0.19, G:0.15, T:0.42 Consensus pattern (10 bp): CGCTAATATT Left flanking sequence: Indices 11767971 -- 11768470 GAGGAGTCGGAGGTGTATATATTATATCTACACATGTTTTTGTTTACGTTAAGGATGCTCGATTG TGAGAACAATGACTTGCTTGCTTGTCATTTATAAATACATATGGACATCGAGTTCTTTCAACTGA TCGGAAAGTTTGCGAGGAGCTAATTTCAGCATACGAAACGCATTAATAGAAGCATAAACCTCTCG TCGATTGCAGATTACAGAGTAACTATGAAAACAACGTTTCATTCGCTAAGGCAAATATGTATGAT AAACAAGCTATTGTAAGTTAGCTAGAGTCTGTATAAACAAATGGCACTGAATGATGCTTACTTTA CACAGATACATGCTTTTGGTCATAATTGAGTTATTTGGATCTAGTTTTGGACTTGGATTTGAATT CAATATGCTGGACTTGCCATGTTGCGTGGACTTCTACTAATCGTGGAAAAAAAGTATCCGCTCGA GTATAAATACACAACTGAATGTTAAAACCGTAGAGGACTAAATTG Right flanking sequence: Indices 11768497 -- 11768996 TAGGGATTCGGTCTGATGAAGGTATTTATAATAGTAGTCGTAGGTAAATATTTTACATACAAAAG AATAAAATAAATAACAATTTCATATCTACAATTATCTGGTATGTACATTGAGTAAATAAATAAAT GTCGCATTTAAATACACATAATTGAAGTACTAACTTTTAATATAAACAAGTCAAAAACGCTTGCA GATTACCGTACCGATTCCTCGAGCTAAATTCTAGATAACTTACAATGTATGCGAGTACCTACAAT CTTTATTTCCTATATATATATATTTTCGATCTAGATCTATGTGTGTTCTGCTTGAAAAGAGTTCT GTTATCGTTAGCTTCATTTTGATGTGCTCTTCGTCTAGACTTGCCCTTACATTAAAAAAAAAGTA CAATACACTTGATCATATTCATATCTAAAATTATGTTGTCTACTCCTATTTCTAAGCAAATAGTA GCTCTAATCTGTTTACAATCTCCCCACGTTTACTCCCAATCCAAT Found at i:11769094 original size:7 final size:7 Alignment explanation
Indices: 11769082--11769135 Score: 66 Period size: 7 Copynumber: 7.7 Consensus size: 7 11769072 TTTTAGTGGA 11769082 TCTGGTT 1 TCTGGTT 11769089 TCTGGTT 1 TCTGGTT 11769096 TCTGGTT 1 TCTGGTT * 11769103 TCTAGTT 1 TCTGGTT * * 11769110 TCTAGAT 1 TCTGGTT * 11769117 TCTGGAT 1 TCTGGTT * * 11769124 ACTAGTT 1 TCTGGTT 11769131 TCTGG 1 TCTGG 11769136 ACTATGAACT Statistics Matches: 39, Mismatches: 8, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 7 39 1.00 ACGTcount: A:0.11, C:0.15, G:0.24, T:0.50 Consensus pattern (7 bp): TCTGGTT Left flanking sequence: Indices 11768582 -- 11769081 CATATCTACAATTATCTGGTATGTACATTGAGTAAATAAATAAATGTCGCATTTAAATACACATA ATTGAAGTACTAACTTTTAATATAAACAAGTCAAAAACGCTTGCAGATTACCGTACCGATTCCTC GAGCTAAATTCTAGATAACTTACAATGTATGCGAGTACCTACAATCTTTATTTCCTATATATATA TATTTTCGATCTAGATCTATGTGTGTTCTGCTTGAAAAGAGTTCTGTTATCGTTAGCTTCATTTT GATGTGCTCTTCGTCTAGACTTGCCCTTACATTAAAAAAAAAGTACAATACACTTGATCATATTC ATATCTAAAATTATGTTGTCTACTCCTATTTCTAAGCAAATAGTAGCTCTAATCTGTTTACAATC TCCCCACGTTTACTCCCAATCCAATTGCGTGGAATAAAATCACTCTCACATTCTTTACACCTCGT TTCAGTTTCAGTTTGAGTTTCAATTAAAGTTGCACTTTTAGTGGA Right flanking sequence: Indices 11769136 -- 11769635 ACTATGAACTATGGATTGTGGCGTCTGCATAATGGTTGCTCGTTCTTGATCCTATCCTCCTTAGA GCGTATGATACGAATACTGTGGATAGTGCTGGTGATGCTGCTGCAGTGGTGGCTCGTCTTGTAGA TCTGGTGTAGTTAGTTCTGGCTGGTGATAATGATGAGCTGGTGCATCGTCCACTCTGTCATTATC AGTTCCTCGTTCGGTATTATAATTAATGTCATTATCTGAATATATCTTTTTAATAGCTAATGGGG ACGTTATTGTAATTGGTACGCTTAATATCATTGCTTCAGTTTTAGTTGTCCTTGGTGTTATTGCA GTTGTTCCGGTTTCACTTCTCTTCATAGTTCTAATGAATTCGATATCGGAGTGGGGCGATGTTGC TCTGGTCTCCGGCAATGATGCCATCACTGGGGATCCGTATGGACCCGATTGCCGGTACCATCTGA GCCATCCATCCTGATGCAATTGTTGCTCCTGCTTCTGTTGCGATT Found at i:11771662 original size:9 final size:9 Alignment explanation
Indices: 11771648--11771666 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 11771638 GCACATTCAC 11771648 AGATAGATA 1 AGATAGATA 11771657 AGATAGATA 1 AGATAGATA 11771666 A 1 A 11771667 ATATGCACAC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.58, C:0.00, G:0.21, T:0.21 Consensus pattern (9 bp): AGATAGATA Left flanking sequence: Indices 11771148 -- 11771647 CATTAGTTATCTCTAAAAATACACATACAAACTTTATAGAAACAAGATTTATTTGACAGGTTCTT TCAAAACTCGAAGTTAATATTTTTTGCACAATTACGATTTAATGGTGATTTTACGATATTGTGTA AAGGATGAACATGTCCCAATCAGAACGTAGTTTACATATTAAACTTTAATGTTGTTTAAAAATTG TTGCTATGCCAAAAATGCATTCACTGTATCTACGTTCATAAGCGTGTGGAATTATTTGAGCACCC TACAGAATTATACAACTTAGAAAAATATGAAACATTAACAACAGTGCTATATATAATGTATTGAG AGAAATATACACAAGTAGTTGGATGATTTGGGGTAATGACCGGTCGGCAGCTAAATTGTTCATGG CAACATGCGTGACTGTTTTGATTTCGATTTGATCTATAGAGATATCAATTATGCAAAAACGAAAA GGATGGATTAAGAAATGGTGCAGAATACTATTGACGCACATTCAC Right flanking sequence: Indices 11771667 -- 11772166 ATATGCACACACGTCTAGATACTGAAACACCCGAAGGCTGCAACCCAAATTATTCCTCTGGTTAT AATATTACATAGACGAGTATGTATGTAGCTCAGTCGATTTCACCGCCCAAAACTGGTACAAAAAA CAATACTGGAACATTGCCTGCATATCTGTGGTAGTAACTGGGTGTTTTTTTTTTTGTGTTTTTTT TGGAACAAGAAGCAAGCTTTAAATAGAGATTCTTGGTCAGTGTCTTATCCTGTGCTGGTCAGGCT GACAGAGGTCAATTTTGAACAAAAAAAAAAATTTATATATATATATATATGTTCTACATACTATG GCTTACGAACTTCACCTTCTTTGTGGAATAGACTAGGAAATGATGTTCACTTATCTCACCCCTAC ACATTGCTGTTCCATAATATATTCACATTTCTCTCACATCGATGCTGTTTTTAAAAAGTGACCAG TACTTGGTGTTCTACTAAGAGTCCGTCGAAAGTAGTCCTGACATA Found at i:11772383 original size:7 final size:7 Alignment explanation
Indices: 11772367--11772385 Score: 31 Period size: 7 Copynumber: 2.9 Consensus size: 7 11772357 GTAACAAGAG 11772367 TACG-AA 1 TACGAAA 11772373 TACGAAA 1 TACGAAA 11772380 TACGAA 1 TACGAA 11772386 TAGTTGGTCA Statistics Matches: 12, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 6 4 0.33 7 8 0.67 ACGTcount: A:0.53, C:0.16, G:0.16, T:0.16 Consensus pattern (7 bp): TACGAAA Left flanking sequence: Indices 11771867 -- 11772366 CAAGAAGCAAGCTTTAAATAGAGATTCTTGGTCAGTGTCTTATCCTGTGCTGGTCAGGCTGACAG AGGTCAATTTTGAACAAAAAAAAAAATTTATATATATATATATATGTTCTACATACTATGGCTTA CGAACTTCACCTTCTTTGTGGAATAGACTAGGAAATGATGTTCACTTATCTCACCCCTACACATT GCTGTTCCATAATATATTCACATTTCTCTCACATCGATGCTGTTTTTAAAAAGTGACCAGTACTT GGTGTTCTACTAAGAGTCCGTCGAAAGTAGTCCTGACATAAAAATCGTATATATTTAAACTCCTC TATTGCTATTCAACAGTTCATTTGCCAGAGATTCAGTGTGTTAGTTTAATGACAAGGATGAATAT GTCTGTACATGTCAGCACCATACATACGAGATGTGATTATAATATAGGTGGATGTTACGAGGATG GCTTCTAGACAAATGAAAACATAAACGCTGCTAGTGTAACAAGAG Right flanking sequence: Indices 11772386 -- 11772885 TAGTTGGTCACATAATCATGAGTTCTTCGGTGTGGTAGATCGCAGATCTGAATGAATTTTTGAGA GCTGTGTTTGGATGTATGAAAAGAGTATTTGAACTATTCGATTTGTTGAAGCTTATGGTTGACTG ATTGGCTGATTGATTGATTGATTGATTGATTGATTGATTGACTGTTTGTTTTCTGATTGAACGTC TGGGCATGACAATACATGTATACATGTTAAGCATGGTTGGCAACTATGTACGAATACAAGTTAGT TACGAGATACGAGTTACGAGTTAACGATTTACGAGTAAGCATGTCTGATCTTTGATGTTTGTTAA AATTGAGATGGTTGAAGTCGAAATTTGTGTAGAAGAAAATACTAGCATATATAGAAAACAAGTTG AGTAGTTGTTTTTGTTAAATTGTTTAAAGTTGATTTTTGATTGAGCTTGTTGGACTTTAGATAAC AAGTGCTAAGGATGTACCCATATCAATCCCATAACCAAGTCTGTC Found at i:11772605 original size:8 final size:8 Alignment explanation
Indices: 11772592--11772607 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 11772582 GGGCATGACA 11772592 ATACATGT 1 ATACATGT 11772600 ATACATGT 1 ATACATGT 11772608 TAAGCATGGT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38 Consensus pattern (8 bp): ATACATGT Left flanking sequence: Indices 11772092 -- 11772591 ACATCGATGCTGTTTTTAAAAAGTGACCAGTACTTGGTGTTCTACTAAGAGTCCGTCGAAAGTAG TCCTGACATAAAAATCGTATATATTTAAACTCCTCTATTGCTATTCAACAGTTCATTTGCCAGAG ATTCAGTGTGTTAGTTTAATGACAAGGATGAATATGTCTGTACATGTCAGCACCATACATACGAG ATGTGATTATAATATAGGTGGATGTTACGAGGATGGCTTCTAGACAAATGAAAACATAAACGCTG CTAGTGTAACAAGAGTACGAATACGAAATACGAATAGTTGGTCACATAATCATGAGTTCTTCGGT GTGGTAGATCGCAGATCTGAATGAATTTTTGAGAGCTGTGTTTGGATGTATGAAAAGAGTATTTG AACTATTCGATTTGTTGAAGCTTATGGTTGACTGATTGGCTGATTGATTGATTGATTGATTGATT GATTGATTGACTGTTTGTTTTCTGATTGAACGTCTGGGCATGACA Right flanking sequence: Indices 11772608 -- 11773107 TAAGCATGGTTGGCAACTATGTACGAATACAAGTTAGTTACGAGATACGAGTTACGAGTTAACGA TTTACGAGTAAGCATGTCTGATCTTTGATGTTTGTTAAAATTGAGATGGTTGAAGTCGAAATTTG TGTAGAAGAAAATACTAGCATATATAGAAAACAAGTTGAGTAGTTGTTTTTGTTAAATTGTTTAA AGTTGATTTTTGATTGAGCTTGTTGGACTTTAGATAACAAGTGCTAAGGATGTACCCATATCAAT CCCATAACCAAGTCTGTCTCGTTCACGCATCTCCTGAAGTCTAGCGGGACTCGGCGATCGTGATC TTTGACATAGACTGGTTGTCCCATATGTGGGATAAGGCAGTTGAGTGCGTTTACTGCGAGACAAA TGACCACCATATCGAGAAGGCGAAGGCGAACGGGCCGGACTTGTCGATGCTGACCATGAACCTAT ATTGTACATATAACAACAATAATAAAAAAAAGTAATAATTAAGGA Found at i:11772666 original size:7 final size:7 Alignment explanation
Indices: 11772643--11772681 Score: 55 Period size: 7 Copynumber: 5.4 Consensus size: 7 11772633 AATACAAGTT 11772643 AGTTACG 1 AGTTACG * 11772650 AGATACG 1 AGTTACG 11772657 AGTTACG 1 AGTTACG 11772664 AGTTAACG 1 AGTT-ACG * 11772672 ATTTACG 1 AGTTACG 11772679 AGT 1 AGT 11772682 AAGCATGTCT Statistics Matches: 27, Mismatches: 4, Indels: 2 0.82 0.12 0.06 Matches are distributed among these distances: 7 21 0.78 8 6 0.22 ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28 Consensus pattern (7 bp): AGTTACG Left flanking sequence: Indices 11772143 -- 11772642 TCCGTCGAAAGTAGTCCTGACATAAAAATCGTATATATTTAAACTCCTCTATTGCTATTCAACAG TTCATTTGCCAGAGATTCAGTGTGTTAGTTTAATGACAAGGATGAATATGTCTGTACATGTCAGC ACCATACATACGAGATGTGATTATAATATAGGTGGATGTTACGAGGATGGCTTCTAGACAAATGA AAACATAAACGCTGCTAGTGTAACAAGAGTACGAATACGAAATACGAATAGTTGGTCACATAATC ATGAGTTCTTCGGTGTGGTAGATCGCAGATCTGAATGAATTTTTGAGAGCTGTGTTTGGATGTAT GAAAAGAGTATTTGAACTATTCGATTTGTTGAAGCTTATGGTTGACTGATTGGCTGATTGATTGA TTGATTGATTGATTGATTGATTGACTGTTTGTTTTCTGATTGAACGTCTGGGCATGACAATACAT GTATACATGTTAAGCATGGTTGGCAACTATGTACGAATACAAGTT Right flanking sequence: Indices 11772682 -- 11773181 AAGCATGTCTGATCTTTGATGTTTGTTAAAATTGAGATGGTTGAAGTCGAAATTTGTGTAGAAGA AAATACTAGCATATATAGAAAACAAGTTGAGTAGTTGTTTTTGTTAAATTGTTTAAAGTTGATTT TTGATTGAGCTTGTTGGACTTTAGATAACAAGTGCTAAGGATGTACCCATATCAATCCCATAACC AAGTCTGTCTCGTTCACGCATCTCCTGAAGTCTAGCGGGACTCGGCGATCGTGATCTTTGACATA GACTGGTTGTCCCATATGTGGGATAAGGCAGTTGAGTGCGTTTACTGCGAGACAAATGACCACCA TATCGAGAAGGCGAAGGCGAACGGGCCGGACTTGTCGATGCTGACCATGAACCTATATTGTACAT ATAACAACAATAATAAAAAAAAGTAATAATTAAGGATGTCGGGGCACAACATTTTACGTATTGGA TCTTAGCAACATATTTTCTCTTCTCTTCTTTTGTTTTGTTTTGTT Found at i:11772677 original size:15 final size:14 Alignment explanation
Indices: 11772643--11772681 Score: 55 Period size: 15 Copynumber: 2.7 Consensus size: 14 11772633 AATACAAGTT * 11772643 AGTTACGAGATACG 1 AGTTACGAGTTACG 11772657 AGTTACGAGTTAACG 1 AGTTACGAGTT-ACG * 11772672 ATTTACGAGT 1 AGTTACGAGT 11772682 AAGCATGTCT Statistics Matches: 22, Mismatches: 2, Indels: 1 0.88 0.08 0.04 Matches are distributed among these distances: 14 10 0.45 15 12 0.55 ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28 Consensus pattern (14 bp): AGTTACGAGTTACG Left flanking sequence: Indices 11772143 -- 11772642 TCCGTCGAAAGTAGTCCTGACATAAAAATCGTATATATTTAAACTCCTCTATTGCTATTCAACAG TTCATTTGCCAGAGATTCAGTGTGTTAGTTTAATGACAAGGATGAATATGTCTGTACATGTCAGC ACCATACATACGAGATGTGATTATAATATAGGTGGATGTTACGAGGATGGCTTCTAGACAAATGA AAACATAAACGCTGCTAGTGTAACAAGAGTACGAATACGAAATACGAATAGTTGGTCACATAATC ATGAGTTCTTCGGTGTGGTAGATCGCAGATCTGAATGAATTTTTGAGAGCTGTGTTTGGATGTAT GAAAAGAGTATTTGAACTATTCGATTTGTTGAAGCTTATGGTTGACTGATTGGCTGATTGATTGA TTGATTGATTGATTGATTGATTGACTGTTTGTTTTCTGATTGAACGTCTGGGCATGACAATACAT GTATACATGTTAAGCATGGTTGGCAACTATGTACGAATACAAGTT Right flanking sequence: Indices 11772682 -- 11773181 AAGCATGTCTGATCTTTGATGTTTGTTAAAATTGAGATGGTTGAAGTCGAAATTTGTGTAGAAGA AAATACTAGCATATATAGAAAACAAGTTGAGTAGTTGTTTTTGTTAAATTGTTTAAAGTTGATTT TTGATTGAGCTTGTTGGACTTTAGATAACAAGTGCTAAGGATGTACCCATATCAATCCCATAACC AAGTCTGTCTCGTTCACGCATCTCCTGAAGTCTAGCGGGACTCGGCGATCGTGATCTTTGACATA GACTGGTTGTCCCATATGTGGGATAAGGCAGTTGAGTGCGTTTACTGCGAGACAAATGACCACCA TATCGAGAAGGCGAAGGCGAACGGGCCGGACTTGTCGATGCTGACCATGAACCTATATTGTACAT ATAACAACAATAATAAAAAAAAGTAATAATTAAGGATGTCGGGGCACAACATTTTACGTATTGGA TCTTAGCAACATATTTTCTCTTCTCTTCTTTTGTTTTGTTTTGTT Found at i:11772706 original size:7 final size:7 Alignment explanation
Indices: 11772686--11772706 Score: 28 Period size: 7 Copynumber: 3.0 Consensus size: 7 11772676 ACGAGTAAGC * 11772686 ATGTCTG 1 ATGTTTG * 11772693 ATCTTTG 1 ATGTTTG 11772700 ATGTTTG 1 ATGTTTG 11772707 TTAAAATTGA Statistics Matches: 11, Mismatches: 3, Indels: 0 0.79 0.21 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.14, C:0.10, G:0.24, T:0.52 Consensus pattern (7 bp): ATGTTTG Left flanking sequence: Indices 11772186 -- 11772685 CTCCTCTATTGCTATTCAACAGTTCATTTGCCAGAGATTCAGTGTGTTAGTTTAATGACAAGGAT GAATATGTCTGTACATGTCAGCACCATACATACGAGATGTGATTATAATATAGGTGGATGTTACG AGGATGGCTTCTAGACAAATGAAAACATAAACGCTGCTAGTGTAACAAGAGTACGAATACGAAAT ACGAATAGTTGGTCACATAATCATGAGTTCTTCGGTGTGGTAGATCGCAGATCTGAATGAATTTT TGAGAGCTGTGTTTGGATGTATGAAAAGAGTATTTGAACTATTCGATTTGTTGAAGCTTATGGTT GACTGATTGGCTGATTGATTGATTGATTGATTGATTGATTGATTGACTGTTTGTTTTCTGATTGA ACGTCTGGGCATGACAATACATGTATACATGTTAAGCATGGTTGGCAACTATGTACGAATACAAG TTAGTTACGAGATACGAGTTACGAGTTAACGATTTACGAGTAAGC Right flanking sequence: Indices 11772707 -- 11773206 TTAAAATTGAGATGGTTGAAGTCGAAATTTGTGTAGAAGAAAATACTAGCATATATAGAAAACAA GTTGAGTAGTTGTTTTTGTTAAATTGTTTAAAGTTGATTTTTGATTGAGCTTGTTGGACTTTAGA TAACAAGTGCTAAGGATGTACCCATATCAATCCCATAACCAAGTCTGTCTCGTTCACGCATCTCC TGAAGTCTAGCGGGACTCGGCGATCGTGATCTTTGACATAGACTGGTTGTCCCATATGTGGGATA AGGCAGTTGAGTGCGTTTACTGCGAGACAAATGACCACCATATCGAGAAGGCGAAGGCGAACGGG CCGGACTTGTCGATGCTGACCATGAACCTATATTGTACATATAACAACAATAATAAAAAAAAGTA ATAATTAAGGATGTCGGGGCACAACATTTTACGTATTGGATCTTAGCAACATATTTTCTCTTCTC TTCTTTTGTTTTGTTTTGTTTTGTTTTTTTTTTTTTCATTTTGGT Found at i:11773249 original size:7 final size:7 Alignment explanation
Indices: 11773237--11773252 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 11773227 CTTTCGAAGA 11773237 GATAAAC 1 GATAAAC 11773244 GATAAAC 1 GATAAAC 11773251 GA 1 GA 11773253 CAATAGAGGA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.56, C:0.12, G:0.19, T:0.12 Consensus pattern (7 bp): GATAAAC Left flanking sequence: Indices 11772737 -- 11773236 GTGTAGAAGAAAATACTAGCATATATAGAAAACAAGTTGAGTAGTTGTTTTTGTTAAATTGTTTA AAGTTGATTTTTGATTGAGCTTGTTGGACTTTAGATAACAAGTGCTAAGGATGTACCCATATCAA TCCCATAACCAAGTCTGTCTCGTTCACGCATCTCCTGAAGTCTAGCGGGACTCGGCGATCGTGAT CTTTGACATAGACTGGTTGTCCCATATGTGGGATAAGGCAGTTGAGTGCGTTTACTGCGAGACAA ATGACCACCATATCGAGAAGGCGAAGGCGAACGGGCCGGACTTGTCGATGCTGACCATGAACCTA TATTGTACATATAACAACAATAATAAAAAAAAGTAATAATTAAGGATGTCGGGGCACAACATTTT ACGTATTGGATCTTAGCAACATATTTTCTCTTCTCTTCTTTTGTTTTGTTTTGTTTTGTTTTTTT TTTTTTCATTTTGGTTTTTTGCGATTTTCAAATTGCTTTCGAAGA Right flanking sequence: Indices 11773253 -- 11773752 CAATAGAGGACCGACTTAACGGAAACGATAAAATTATTATTGAAATATAATATATTTGTATTAAA AGATTTCGTTAATAGCTATGGAATTGTAGACATATATGTATATATGTATATAACTACGGTTCTAC AAAATAGATCAAAAATCCCTGGAATGTCCAAGTCCCTTTGTTTTCTGTGTGTGCCCCTTGCAAGC CGATCTCATATGGATACGAAGTGATTAAGGGCAACATCAAGGACAGACAACTCGATAACAGGATA ATGTTGACGAATCCCTAACCAGATCATTTGGCTTACAACCAGCACACACACACACACACACGATA GTCAGTTGAAAGTAGTTAATGATTAAATGCCATGGATGTCGAGCCAATAAATACCTCTTGGATAC CGCGGATGACTGTTGCCATGCCTAGGATGACGAGTCTCCTTGACCATCTCTACAACATTAGATAC GGTATCGGAGAACCCGATATCATGATGTATGTATTGATGGCCACG Found at i:11773362 original size:8 final size:8 Alignment explanation
Indices: 11773349--11773369 Score: 42 Period size: 8 Copynumber: 2.6 Consensus size: 8 11773339 AATTGTAGAC 11773349 ATATATGT 1 ATATATGT 11773357 ATATATGT 1 ATATATGT 11773365 ATATA 1 ATATA 11773370 ACTACGGTTC Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 13 1.00 ACGTcount: A:0.43, C:0.00, G:0.10, T:0.48 Consensus pattern (8 bp): ATATATGT Left flanking sequence: Indices 11772849 -- 11773348 AGGATGTACCCATATCAATCCCATAACCAAGTCTGTCTCGTTCACGCATCTCCTGAAGTCTAGCG GGACTCGGCGATCGTGATCTTTGACATAGACTGGTTGTCCCATATGTGGGATAAGGCAGTTGAGT GCGTTTACTGCGAGACAAATGACCACCATATCGAGAAGGCGAAGGCGAACGGGCCGGACTTGTCG ATGCTGACCATGAACCTATATTGTACATATAACAACAATAATAAAAAAAAGTAATAATTAAGGAT GTCGGGGCACAACATTTTACGTATTGGATCTTAGCAACATATTTTCTCTTCTCTTCTTTTGTTTT GTTTTGTTTTGTTTTTTTTTTTTTCATTTTGGTTTTTTGCGATTTTCAAATTGCTTTCGAAGAGA TAAACGATAAACGACAATAGAGGACCGACTTAACGGAAACGATAAAATTATTATTGAAATATAAT ATATTTGTATTAAAAGATTTCGTTAATAGCTATGGAATTGTAGAC Right flanking sequence: Indices 11773370 -- 11773869 ACTACGGTTCTACAAAATAGATCAAAAATCCCTGGAATGTCCAAGTCCCTTTGTTTTCTGTGTGT GCCCCTTGCAAGCCGATCTCATATGGATACGAAGTGATTAAGGGCAACATCAAGGACAGACAACT CGATAACAGGATAATGTTGACGAATCCCTAACCAGATCATTTGGCTTACAACCAGCACACACACA CACACACACGATAGTCAGTTGAAAGTAGTTAATGATTAAATGCCATGGATGTCGAGCCAATAAAT ACCTCTTGGATACCGCGGATGACTGTTGCCATGCCTAGGATGACGAGTCTCCTTGACCATCTCTA CAACATTAGATACGGTATCGGAGAACCCGATATCATGATGTATGTATTGATGGCCACGCCGTCGA GGACTCGGAGATCTGGCCAGTGGAGAGCCATTGTGCCTGCACGATAATAATTAATAAGGAAATTA ATTAATCTATTTTTTTGTTTTTAACGTTCTTACCTCAAGCTAGGC Found at i:11774188 original size:8 final size:8 Alignment explanation
Indices: 11774175--11774209 Score: 49 Period size: 8 Copynumber: 4.5 Consensus size: 8 11774165 GCATTTCAAA 11774175 GTTTTTGT 1 GTTTTTGT 11774183 GTTTTTGT 1 GTTTTTGT * 11774191 GTTTTTTT 1 GTTTTTGT * 11774199 TTTTTTG- 1 GTTTTTGT 11774206 GTTT 1 GTTT 11774210 GGGACTCCTC Statistics Matches: 23, Mismatches: 4, Indels: 1 0.82 0.14 0.04 Matches are distributed among these distances: 7 3 0.13 8 20 0.87 ACGTcount: A:0.00, C:0.00, G:0.20, T:0.80 Consensus pattern (8 bp): GTTTTTGT Left flanking sequence: Indices 11773675 -- 11774174 AGTCTCCTTGACCATCTCTACAACATTAGATACGGTATCGGAGAACCCGATATCATGATGTATGT ATTGATGGCCACGCCGTCGAGGACTCGGAGATCTGGCCAGTGGAGAGCCATTGTGCCTGCACGAT AATAATTAATAAGGAAATTAATTAATCTATTTTTTTGTTTTTAACGTTCTTACCTCAAGCTAGGC GATCGCCGATGGCCATTCATATACGAATGTCCAGGATGTAAATGGCCAGCATCGGCACCGGTAAG CGACTCCTGCGACGGATGTCTCGATGCATCCTGCAGCTCCAGCATCTAGTTGGAAAATGATTGTG GAACGTTTTAGTAAGCCAACTCCATGGTCACCATGAATGCTACCACTCGAAATCAGTCCAAAAAG ATTGAGAAGTAGTTCGGGTTACGGGGTTTGGGGAAAACAGGTGGGTGATTTCGATTGGGGTAAAC ACTTCCAGATGGTCGAATCGATTCTAATTTGGTCAGCATTTCAAA Right flanking sequence: Indices 11774210 -- 11774709 GGGACTCCTCTAGACCGATTTCTTGTGGATTCATTCATTGCAAGGATACGTAAGTTTAGGTATAT CTGTGTATTTATAAATTTAGAACTATAGTTGTCCAATGCCCCGTAATGGAGCGTTGGCAATAGAT ATGTATATATGCTTGAACTTGTATATAATGCTACAAAATAAATATACATAGAGACATGTATGCTT ACTTTGCGGGATATAGTATTTAGGGGATATACGGTATATAAAAGTAAACAAAAGCAATCATTACT CCACTGCAACAAAATACATATTCAAATGCGTTTTTAATTGTACTAGTTTGTATAGAAAGGTTCTT AAATGCGGGATTATATTGATTTTGTATTTGATAGTTAACCTATTTGAGGGCATGTAACATTTAAG GAATTCCATACACTACTCGGGAGTATACATATACATATATACTTGGTCACTTTCTCTAGATATAA TTGGGTTCCTTTGGGGTTCTTTTATTGTATAATCGACTGGATGTC Found at i:11774962 original size:9 final size:9 Alignment explanation
Indices: 11774948--11774965 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 11774938 ATATCTACAA 11774948 GATAAATAG 1 GATAAATAG 11774957 GATAAATAG 1 GATAAATAG 11774966 CTACTCATGC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.56, C:0.00, G:0.22, T:0.22 Consensus pattern (9 bp): GATAAATAG Left flanking sequence: Indices 11774448 -- 11774947 GTAAACAAAAGCAATCATTACTCCACTGCAACAAAATACATATTCAAATGCGTTTTTAATTGTAC TAGTTTGTATAGAAAGGTTCTTAAATGCGGGATTATATTGATTTTGTATTTGATAGTTAACCTAT TTGAGGGCATGTAACATTTAAGGAATTCCATACACTACTCGGGAGTATACATATACATATATACT TGGTCACTTTCTCTAGATATAATTGGGTTCCTTTGGGGTTCTTTTATTGTATAATCGACTGGATG TCTGCTTATACTTGAGGTTTTTCTGAAAATGATATGACTGCCATATTGCGTTTCTTCTTACGCCA ATTGCTTAACATTCGACTACGTTATTGATTTTGGTTTATTGTCCTATATTTATGGTAATATAATG TGGTACAAAAGAAGTGAAATGCAAAATACGAAGGTACAGCTAGTATCAATCGATCTTTGCATCTG GAATGTGAAGATTTAGCCAGATTTCTCTACACGATATATCTACAA Right flanking sequence: Indices 11774966 -- 11775465 CTACTCATGCAAGTGATTGTGTTTATAGCGTCTAATTGATAAAGCAGTGATATAATCTCAAGAAC AACAAAGCGGAACATTGAAAGCTAAGCAAATATGTATGTAACTATAGGCATGCACTACTTAGTCA TAATTCTCTGAATAAATGTGTGGTGTGATGGTGGGTAATGGGTTTTTGGTCAGGTCCTGAGTCCA TTTCCAATTGCTCCTCTTTGGGCCGTGGAAAGAGCAGCTTCATCGAGCGCCAATTGATTTAGAAT CGAGAAGGCCGACGAACTTACTTACCGTTCACAAACCGTTTCGCATTCGTGATTGGACTGACGAT TAACATTCAAATACCAAAATTGTTTACTTATTACATTCAAATCGAATTCGAAAACAATTACTACC TACACATAAAGCCGCCTTTACATGTGTAACTAGAGGGTTAATTCGCTAGAAATCAAGAATCACTT GGACGATTGGGAGAACTTCGCCTCAATTTAGGTCTAAAACCATTA Found at i:11775876 original size:7 final size:7 Alignment explanation
Indices: 11775864--11775880 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 11775854 AACGATTTTC 11775864 AATTGTT 1 AATTGTT 11775871 AATTGTT 1 AATTGTT 11775878 AAT 1 AAT 11775881 GGGGCAGACT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53 Consensus pattern (7 bp): AATTGTT Left flanking sequence: Indices 11775364 -- 11775863 AAGCCGCCTTTACATGTGTAACTAGAGGGTTAATTCGCTAGAAATCAAGAATCACTTGGACGATT GGGAGAACTTCGCCTCAATTTAGGTCTAAAACCATTATAATACAAGTTACAATTTGTGCGCTAAG TGTGCTGGCTTTAACTCTAAGAGAAAAAGCCATTCTCTAGTTTGTATATAGTGTTGCCCAAAGAG TGACTACAAATTATTTCCTGAGTGAATTTACACTTGCGACCGAGAATTCAAACGTTTTTCATCGC GTGGCTTTATGTGTACGTAGAAAAGTCGATCAGGTCATTTCCGGATCTCACTTCCGATGTCCTAC CGGAAATCGGTGACATTGAACGTGACAACAACAAGTGACGTGATTATTCAGTCTGATTGAACCCA AGATTATCGGACTTCGCCCAAATGGCTGTTGTGAGTGGGAACAGAGTTAGAACCGCCAACTTATT TCACATGGCTGGCACGCCTGATGCGAATTGAAATCAACGATTTTC Right flanking sequence: Indices 11775881 -- 11776380 GGGGCAGACTTGATCTGTGAGTAGGAAAATTGCAGTTTCTGGTGTAAAATGAAGGTGTCGCAGTA TGTCTAGGTCGCAATTGTACTGGAATTGGTGAGTTAATCATACATTGCTGGCATGTTGTACGTGA TAACCAAAGATGTTATTACACTTGCCTATGCTTACGCTATATTCCTAAAGGACCTCGCAAACCAG TCGGTGAAACGGGGTCACACAGTCATTGGAATTTGGGCAAAAACGATTGCAAGTCCGCTTTTTGA AACTACAAGTCAACAACTTTGTTTAATTTAATAACTGAATAATGCACAGAGAACCATGACTTAAG TGCCATTTATCAAAAGAGTGCGTTATCGAAATTAAAACCTCGTATCTATCATTGATCAAATATGA TTCTCTGTACATTTTCAGCACTGAATTGTGGGATCAGACGGCAAAATCGTACTGCGTTTTAGTGG GGTTGAGTGGGGCTTTGGCCGGAGCCCTTCGGTTTGCTGTTCGTT Found at i:11776417 original size:8 final size:8 Alignment explanation
Indices: 11776406--11776425 Score: 26 Period size: 8 Copynumber: 2.5 Consensus size: 8 11776396 CTCAACTTGT * 11776406 CCAATAAA 1 CCAACAAA * 11776414 CCAACGAA 1 CCAACAAA 11776422 CCAA 1 CCAA 11776426 GGAATGCCTA Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.55, C:0.35, G:0.05, T:0.05 Consensus pattern (8 bp): CCAACAAA Left flanking sequence: Indices 11775906 -- 11776405 AAAATTGCAGTTTCTGGTGTAAAATGAAGGTGTCGCAGTATGTCTAGGTCGCAATTGTACTGGAA TTGGTGAGTTAATCATACATTGCTGGCATGTTGTACGTGATAACCAAAGATGTTATTACACTTGC CTATGCTTACGCTATATTCCTAAAGGACCTCGCAAACCAGTCGGTGAAACGGGGTCACACAGTCA TTGGAATTTGGGCAAAAACGATTGCAAGTCCGCTTTTTGAAACTACAAGTCAACAACTTTGTTTA ATTTAATAACTGAATAATGCACAGAGAACCATGACTTAAGTGCCATTTATCAAAAGAGTGCGTTA TCGAAATTAAAACCTCGTATCTATCATTGATCAAATATGATTCTCTGTACATTTTCAGCACTGAA TTGTGGGATCAGACGGCAAAATCGTACTGCGTTTTAGTGGGGTTGAGTGGGGCTTTGGCCGGAGC CCTTCGGTTTGCTGTTCGTTGCCACTGTTTAACTGCTCAACTTGT Right flanking sequence: Indices 11776426 -- 11776925 GGAATGCCTAAGTACATGGGCGTACATTTAGTGGTTATAGAAACGATCAAATTACAACATTGAGT ACGAGTACGAGTACTAAGCCAAGTTTTGCGTTTCTAATGTTTTTTTTTTTTTTTTTTTTGTTAAA TTGCTATGCAACATTTAGGTACGAGTATGTATTGCACTATTGAGTAAACGCAAATTAAAGTTTTA TAGTAGGTTGAATACGCAGTACACACATGTCCGCATGTATATATGATGTATGTATGTATTTATAT ATATATATATATATATATATATTCATATTTATGCATGTGGAGCTATGCTGAGCTATGCACCCGGC AATATCTGGCATATTATATATTCATATTGTACATAGTCATAGATACGTCGTACATGGGCGCGTAC AGCTATACATATACTTATGAGTGAGTATGTATGTATTTAAAGGTACTAGTTGATTACTTGACTTA ATCGGTTTGTGAACAACATTTATATCGGAAACGGAGTATGGACAC Found at i:11776713 original size:10 final size:10 Alignment explanation
Indices: 11776673--11776721 Score: 42 Period size: 10 Copynumber: 5.1 Consensus size: 10 11776663 ATGATGTATG * * 11776673 TATGTATTTA 1 TATATATTCA 11776683 TATATA-T-A 1 TATATATTCA ** 11776691 TATATATATA 1 TATATATTCA 11776701 TATATATTCA 1 TATATATTCA * * 11776711 TATTTATGCA 1 TATATATTCA 11776721 T 1 T 11776722 GTGGAGCTAT Statistics Matches: 31, Mismatches: 6, Indels: 4 0.76 0.15 0.10 Matches are distributed among these distances: 8 7 0.23 9 1 0.03 10 23 0.74 ACGTcount: A:0.39, C:0.04, G:0.04, T:0.53 Consensus pattern (10 bp): TATATATTCA Left flanking sequence: Indices 11776173 -- 11776672 AACTGAATAATGCACAGAGAACCATGACTTAAGTGCCATTTATCAAAAGAGTGCGTTATCGAAAT TAAAACCTCGTATCTATCATTGATCAAATATGATTCTCTGTACATTTTCAGCACTGAATTGTGGG ATCAGACGGCAAAATCGTACTGCGTTTTAGTGGGGTTGAGTGGGGCTTTGGCCGGAGCCCTTCGG TTTGCTGTTCGTTGCCACTGTTTAACTGCTCAACTTGTCCAATAAACCAACGAACCAAGGAATGC CTAAGTACATGGGCGTACATTTAGTGGTTATAGAAACGATCAAATTACAACATTGAGTACGAGTA CGAGTACTAAGCCAAGTTTTGCGTTTCTAATGTTTTTTTTTTTTTTTTTTTTGTTAAATTGCTAT GCAACATTTAGGTACGAGTATGTATTGCACTATTGAGTAAACGCAAATTAAAGTTTTATAGTAGG TTGAATACGCAGTACACACATGTCCGCATGTATATATGATGTATG Right flanking sequence: Indices 11776722 -- 11777221 GTGGAGCTATGCTGAGCTATGCACCCGGCAATATCTGGCATATTATATATTCATATTGTACATAG TCATAGATACGTCGTACATGGGCGCGTACAGCTATACATATACTTATGAGTGAGTATGTATGTAT TTAAAGGTACTAGTTGATTACTTGACTTAATCGGTTTGTGAACAACATTTATATCGGAAACGGAG TATGGACACAAAGAGTATTCACATAAATTTATATAATACACAATTAATTATTATTTTTGATTAGT AAAATTTGTTGATAATTTCATTTTGGTTTACCGCTTGGAGTTTATCAAACTTATTCACCTTTTTG TTTCTGAAATATTTAAAAATTAGAAGAAAAACAATTTACTTATGTCAATGTTGAAGAATGCACAA AGGCACAAAGATCTTGTAGTTAGTTGCTAATAGTGTTGGTAAGTGTTGTTGTTAGTAGTAATAGT TGTATTTCGATAGTGTTGTGAAGCGAAAGTTATCTTATGCATGTA Found at i:11777119 original size:8 final size:8 Alignment explanation
Indices: 11777106--11777121 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 11777096 GTTGAAGAAT 11777106 GCACAAAG 1 GCACAAAG 11777114 GCACAAAG 1 GCACAAAG 11777122 ATCTTGTAGT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.25, G:0.25, T:0.00 Consensus pattern (8 bp): GCACAAAG Left flanking sequence: Indices 11776606 -- 11777105 CAAATTAAAGTTTTATAGTAGGTTGAATACGCAGTACACACATGTCCGCATGTATATATGATGTA TGTATGTATTTATATATATATATATATATATATATATTCATATTTATGCATGTGGAGCTATGCTG AGCTATGCACCCGGCAATATCTGGCATATTATATATTCATATTGTACATAGTCATAGATACGTCG TACATGGGCGCGTACAGCTATACATATACTTATGAGTGAGTATGTATGTATTTAAAGGTACTAGT TGATTACTTGACTTAATCGGTTTGTGAACAACATTTATATCGGAAACGGAGTATGGACACAAAGA GTATTCACATAAATTTATATAATACACAATTAATTATTATTTTTGATTAGTAAAATTTGTTGATA ATTTCATTTTGGTTTACCGCTTGGAGTTTATCAAACTTATTCACCTTTTTGTTTCTGAAATATTT AAAAATTAGAAGAAAAACAATTTACTTATGTCAATGTTGAAGAAT Right flanking sequence: Indices 11777122 -- 11777621 ATCTTGTAGTTAGTTGCTAATAGTGTTGGTAAGTGTTGTTGTTAGTAGTAATAGTTGTATTTCGA TAGTGTTGTGAAGCGAAAGTTATCTTATGCATGTACGTATGTATGTTGAATGTATGCTGTGGTCC TTCACGATCAGCGAGATTACTGACTTATCTTCATGGGAAGATATAGAGATTATATTTGATTTTCG AAAAGCTGTTTTCAAGTCTTGAGATAAAAGTTACTTAAACTTAATACTTCTATTTTTGGCTTTAC AACCAAACAGCTGTCTGAAGTGCTGATAATTACGCTTTTAAGATCCTGCAACTTTATAGAGAATG TTTTACGGAATCGCTCGTTGACTTGTTCGTTTAGCTGGGAAAAGGAATTTACAACTGAAGATTAT ATAGCATACTTTCTTGCGCAAAGCGGAATAGATATTCCGGGAACGAGGTCAGAGCTTAGATCTAT GTATGTATTTATAAAGTACAATCGAGTAAAGTAGACCACTCGTCG Found at i:11777360 original size:6 final size:7 Alignment explanation
Indices: 11777348--11777365 Score: 29 Period size: 6 Copynumber: 2.7 Consensus size: 7 11777338 AGATAAAAGT 11777348 TACTTAA 1 TACTTAA 11777355 -ACTTAA 1 TACTTAA 11777361 TACTT 1 TACTT 11777366 CTATTTTTGG Statistics Matches: 10, Mismatches: 0, Indels: 2 0.83 0.00 0.17 Matches are distributed among these distances: 6 6 0.60 7 4 0.40 ACGTcount: A:0.39, C:0.17, G:0.00, T:0.44 Consensus pattern (7 bp): TACTTAA Left flanking sequence: Indices 11776848 -- 11777347 GTATTTAAAGGTACTAGTTGATTACTTGACTTAATCGGTTTGTGAACAACATTTATATCGGAAAC GGAGTATGGACACAAAGAGTATTCACATAAATTTATATAATACACAATTAATTATTATTTTTGAT TAGTAAAATTTGTTGATAATTTCATTTTGGTTTACCGCTTGGAGTTTATCAAACTTATTCACCTT TTTGTTTCTGAAATATTTAAAAATTAGAAGAAAAACAATTTACTTATGTCAATGTTGAAGAATGC ACAAAGGCACAAAGATCTTGTAGTTAGTTGCTAATAGTGTTGGTAAGTGTTGTTGTTAGTAGTAA TAGTTGTATTTCGATAGTGTTGTGAAGCGAAAGTTATCTTATGCATGTACGTATGTATGTTGAAT GTATGCTGTGGTCCTTCACGATCAGCGAGATTACTGACTTATCTTCATGGGAAGATATAGAGATT ATATTTGATTTTCGAAAAGCTGTTTTCAAGTCTTGAGATAAAAGT Right flanking sequence: Indices 11777366 -- 11777865 CTATTTTTGGCTTTACAACCAAACAGCTGTCTGAAGTGCTGATAATTACGCTTTTAAGATCCTGC AACTTTATAGAGAATGTTTTACGGAATCGCTCGTTGACTTGTTCGTTTAGCTGGGAAAAGGAATT TACAACTGAAGATTATATAGCATACTTTCTTGCGCAAAGCGGAATAGATATTCCGGGAACGAGGT CAGAGCTTAGATCTATGTATGTATTTATAAAGTACAATCGAGTAAAGTAGACCACTCGTCGTCGT CTGGTTTTATGGCTGATGATGATCGAATGAAATGGTGATAATGGCAATGGCGATGATTATATGAT ACTTTGCACTTTACGGACTATGGTTAAGATTGAAGCTGGTTTTAAATTACCTAACTGATCGCTTT CTGATCGTACTCCGCCGTGCTAGTGTTGCCAAACTGTTGTGTTCGGCATCACCGTTTGCGTGGTG ATGGTGCGTGCTGGCTAACAAATGTGTTTGTGAGTTGGCGGCTCC Found at i:11777988 original size:8 final size:8 Alignment explanation
Indices: 11777977--11778002 Score: 38 Period size: 8 Copynumber: 3.2 Consensus size: 8 11777967 TTTTTTTTTT * 11777977 TTTTTGGA 1 TTTTTCGA * 11777985 TTTTGCGA 1 TTTTTCGA 11777993 TTTTTCGA 1 TTTTTCGA 11778001 TT 1 TT 11778003 GGCAATTGGC Statistics Matches: 15, Mismatches: 3, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 8 15 1.00 ACGTcount: A:0.12, C:0.08, G:0.19, T:0.62 Consensus pattern (8 bp): TTTTTCGA Left flanking sequence: Indices 11777477 -- 11777976 TTAGCTGGGAAAAGGAATTTACAACTGAAGATTATATAGCATACTTTCTTGCGCAAAGCGGAATA GATATTCCGGGAACGAGGTCAGAGCTTAGATCTATGTATGTATTTATAAAGTACAATCGAGTAAA GTAGACCACTCGTCGTCGTCTGGTTTTATGGCTGATGATGATCGAATGAAATGGTGATAATGGCA ATGGCGATGATTATATGATACTTTGCACTTTACGGACTATGGTTAAGATTGAAGCTGGTTTTAAA TTACCTAACTGATCGCTTTCTGATCGTACTCCGCCGTGCTAGTGTTGCCAAACTGTTGTGTTCGG CATCACCGTTTGCGTGGTGATGGTGCGTGCTGGCTAACAAATGTGTTTGTGAGTTGGCGGCTCCT TCCCCATTCGGCTCGAAACTTATGGAGCCCTGACGCGATCCTCCTTTGTCAAGGGCGGCCATATC GAGGAGGCAGTTAAAGAAAGATTGTTTCTACGGTTTTTTTTTTTT Right flanking sequence: Indices 11778003 -- 11778502 GGCAATTGGCAGTCGATTTGGTAGACAGGAAAGTGCAGTGGTTGTAATTCATAGTTTTAATTGCC ATTCCGTTGCGTTCCGTTTTGGTATTGGTATTGGTTTCGTTCGTTGTAGTTCGTTTTCATGAATA TTTTTCGTGTGTTTTGTTTATATATATATTTTTTTTTTTAAGTTGTATTTGTTTTTAAGTTGTAG AAATACAGATTTCAGATAGTGCAATTCAATTAAATTGTTGTTTATTGTAGACACAGTTGTGGTTA AAGTTGGGTGATTGGTGAATATTTGATGTAGTAACATTGCAACGCATTGGGATTGGTTTTGATTT TGTTTTTGTTTTGGTTTTTGGTTTTTGTTTTTTTTTTTTTTTTTTTGTATAAGCATTGAAAATGG AATGTAAGAATTATTATAGAGTAATTAAAAAGTATAAATAGATTACAGAACAGAAATGATAATCA AAAGTATCGTTATTATCGCATATATGTATGTACATATGCATAGTA Found at