TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_2L assembled 2004-4-6 md5checksum:29037f68a520aa000acffb8837e59820 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 22407834 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Warning! 100 characters in sequence are not A, C, G, or T Found at i: i:14167386 original size:9 final size:9 Alignment explanation
Indices: 14167355--14167396 Score: 47 Period size: 9 Copynumber: 4.7 Consensus size: 9 14167345 AACGTTGGAA 14167355 CTGCTGATTG 1 CTGCTGA-TG ** 14167365 CTG-TGGGG 1 CTGCTGATG 14167373 CTGCTGATG 1 CTGCTGATG * 14167382 CTGCTGCTG 1 CTGCTGATG 14167391 CTGCTG 1 CTGCTG 14167397 CTGTGGGAAC Statistics Matches: 26, Mismatches: 5, Indels: 3 0.76 0.15 0.09 Matches are distributed among these distances: 8 4 0.15 9 19 0.73 10 3 0.12 ACGTcount: A:0.05, C:0.24, G:0.38, T:0.33 Consensus pattern (9 bp): CTGCTGATG Left flanking sequence: Indices 14166855 -- 14167354 GCTGATACTGCTGCTGCTGACTGGACTGTGGCTGGTAGTTAAACTGGCTCTGCTGCTGGGGAATC GTCTGGAAAGTGGGCACGGGTGCCTGGCTGGGCAGCTTCTGTGTGGTCTGGGGCAGAACCTGTGG TCCAAACTGCTGGGGCTGCTGGTAGGCAAACTGCTGCTGTTGCTGTTGCTGCAATTGCTGTTGCT GGTAAGTTTCCGGAGATGGTTGTGGCGGGAAGGCAGTGGACTGCAAGCGGGAATCTGGGGGAATA CAACGAGAAGGGTAACAGGTTGAAGATCAGGAAAGATCTTGAGTCTGACTTACCAAATTGCTTAT GGCGCTGCTGATGTTGTTGCTGATTTGGCTGCTGCTGCTGGGAGCCAGCAAAGTTGCGCAAGTCC AAGAAGTTTTGATGATGCAGATCCAAACCGGCGGCAGGAGAGGGCAACTGCTGCTGCTGCTGCGG GAACTGTGGAGCGGTTTGAAGTTGATTTTGGGTCGAACGTTGGAA Right flanking sequence: Indices 14167397 -- 14167896 CTGTGGGAACTGCCCGAAGCGGTGCTGCTGCTGCGGCTGCTGCTGGTGATGCAGATGCGTGTGCT GCGGATGGGGGCCATGTTGGGAGCGGTGGGGAATGGGCAGCTCCACGCCCGCCTGGACAAAGTTT TGCTGATTGTACTGCTGCAGATTTAGCTGACGGCGCTGCGAGTTGTGAAAGGGCGGCTGCAATGA GGGGAACAGGTGAGTTACAACTTTCCATGGCGATCATTGCATCATCTCGGCCAGAGCAGAAACCA GCTTTGCCTCGAGATCCCTCGACAGTTAAAAGATAAGTCAAACATTGAGTGAACGCTCCTAAAAT AGACGTGAACCAGTTTCACAGGCGGCTGTAATAGCAATCTCCGCTCCACTTTTGCAGGCTAAACT GGACTGTGTGTCTGGTTTGGCTAGGGGTCCTTATTGGCGGGCAGTCGGTCAAGTTGAAGTCCATA AAAAAAATGGCAAACTTGTTTGCGCCACGAAAAAATACGTATTAC Found at i:14170154 original size:7 final size:7 Alignment explanation
Indices: 14170142--14170155 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 14170132 TCGGTCATGT 14170142 CAATGGC 1 CAATGGC 14170149 CAATGGC 1 CAATGGC 14170156 ATCCAAGCTG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.29, G:0.29, T:0.14 Consensus pattern (7 bp): CAATGGC Left flanking sequence: Indices 14169642 -- 14170141 CACTACATTCCACCGGATCGAAACCAGTTTACAGAAACATCTTTCACATGTTCACCGGGGCGTTG TGATCCACGATGTATCTGTCAGTTACATGACTCCAGCTGCCGGCTAATTTGTTAATAATTCATAA TTGATTTCTCATCACACACACACATCCAGACAAGGGGTCGAGACAAGTATTACGAGGCCTCAGAC CGACAAGATACGAAATGAAAGCGAAATTTTTGGAAATTTCTTTTTAGATTTAGTTTAGTCTCGCA GTGAAAGTGATCCGCTTGGTATTTAGTGAGCATTTAAGATGTTTATGCTAATTAGAATTTAATAG TCAAAGCCGCAAGACCTTCAAGCCCCAAGAAATGGTGCGCTCATTAATAGTCACCCAAAATCAGA GGCCGTAAATTCTTCAAATCCTGAGTTGCGCAACAGCCTGAGGTTTCTGCGAGATGTTTCGAGAG TCGCACAATTTACAAGTTTTCCAGTTTTTATTTTTTCGGTCATGT Right flanking sequence: Indices 14170156 -- 14170655 ATCCAAGCTGGCCTCGTTTTCCCCGATTGCCTTTCGGATTTCCTGCCTGCCCCGCAGTCAACCGA GGAAAAACCAAATGCATTTGCCTTCCAGTTTTGCACTGGATCTTTGTGTGTTCTTTCTACCTCAC TTGGTGGTTTGTTTTGGAGTTTCGGTAACCACATAATGCAATTCACAGAGTTTCAAGGTTGTTTT TGGTCTGATCTGAGGATCTTTTTTCAGAGGCGATCGAAGTCGTGTTGTGCAATTTGTGTTCTCGC CATAAAAAGAGCTGCACATGTCAGATGTCAGATTGGGCATCAATCTAACAGCTAATGAGGCTCCA TGTATTTGGGATAAGTAAAGAACATTGAGTTTTTTAATCGAATCAAATTAAAGATTACAAAGTGC AAAAAGTGGGCCAATTATATACATTTTCTTAGGAAGATATTGAAATATAGTAAATAAATCTCCTG GGCTCGGTAACCAATCATTTGGGTACAACCTTTTATAACATTGCA Found at i:14170445 original size:7 final size:7 Alignment explanation
Indices: 14170433--14170448 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 14170423 AGAGCTGCAC 14170433 ATGTCAG 1 ATGTCAG 14170440 ATGTCAG 1 ATGTCAG 14170447 AT 1 AT 14170449 TGGGCATCAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.31, C:0.12, G:0.25, T:0.31 Consensus pattern (7 bp): ATGTCAG Left flanking sequence: Indices 14169933 -- 14170432 ATTTAAGATGTTTATGCTAATTAGAATTTAATAGTCAAAGCCGCAAGACCTTCAAGCCCCAAGAA ATGGTGCGCTCATTAATAGTCACCCAAAATCAGAGGCCGTAAATTCTTCAAATCCTGAGTTGCGC AACAGCCTGAGGTTTCTGCGAGATGTTTCGAGAGTCGCACAATTTACAAGTTTTCCAGTTTTTAT TTTTTCGGTCATGTCAATGGCCAATGGCATCCAAGCTGGCCTCGTTTTCCCCGATTGCCTTTCGG ATTTCCTGCCTGCCCCGCAGTCAACCGAGGAAAAACCAAATGCATTTGCCTTCCAGTTTTGCACT GGATCTTTGTGTGTTCTTTCTACCTCACTTGGTGGTTTGTTTTGGAGTTTCGGTAACCACATAAT GCAATTCACAGAGTTTCAAGGTTGTTTTTGGTCTGATCTGAGGATCTTTTTTCAGAGGCGATCGA AGTCGTGTTGTGCAATTTGTGTTCTCGCCATAAAAAGAGCTGCAC Right flanking sequence: Indices 14170449 -- 14170948 TGGGCATCAATCTAACAGCTAATGAGGCTCCATGTATTTGGGATAAGTAAAGAACATTGAGTTTT TTAATCGAATCAAATTAAAGATTACAAAGTGCAAAAAGTGGGCCAATTATATACATTTTCTTAGG AAGATATTGAAATATAGTAAATAAATCTCCTGGGCTCGGTAACCAATCATTTGGGTACAACCTTT TATAACATTGCAAAATAGCCAGAGATTTCAGCAGCCGCCAAAGCTGGGACATCGTTTAAAGTAAT TTATTATTGGGCTGTCATCCACATTTTGGGGCTCATTAAATTGTTTGTCTAACTTATCATCACAG TGCATCTTGATCTTAGTTAAATCTAAGAAATCGCGCTCACATTATTTCCACATCAGCCATTCCGA TCGATAAAGTCCAGAACAGAGTGCTTAGTTTCGATTTTTGGCCCAAACCAAAACTGGTTAGCATA AGATGTAACCTCCTGCATTCCCCCTGTTGACAGTCACCATATGAC Found at i:14174341 original size:7 final size:7 Alignment explanation
Indices: 14174329--14174355 Score: 40 Period size: 7 Copynumber: 3.9 Consensus size: 7 14174319 CTTCGGACTC 14174329 TGGTCTA 1 TGGTCTA 14174336 TGGTCTA 1 TGGTCTA * * 14174343 TGGTTTT 1 TGGTCTA 14174350 TGGTCT 1 TGGTCT 14174356 GGCAAATGTT Statistics Matches: 17, Mismatches: 3, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 7 17 1.00 ACGTcount: A:0.07, C:0.11, G:0.30, T:0.52 Consensus pattern (7 bp): TGGTCTA Left flanking sequence: Indices 14173829 -- 14174328 CCTCCCAGTTCGCTGTCAAGTCCTCTTGGCGCCTCAGATCTTTCTAGCGATCCAACTTAACGCTT GTCTAATGCTTTAATTACATATTAGCATTGCCTTAGATTCCCAGACATGCGATTGCATTTGGAGC CAGCAACTAGACTTCCCCACCCACATATCATTTGTCATTGTTTTCCCAGTGGAATGGAATGTAAA ACTTTTGGTTTTCCATTTTCCTCCACTTCATGTTCAGTTGGAATCCATAATTTGTGGGTTAGGAG TGCGCCAGTGCCGAATACTCTGGTTTCGAAAGTGAAGTTCTTTTCATTTTAATTACCTTCACCAG GCGGAGGAACCAATTAAGTCATTTTCAGATTGTATCGCAGCCAGCTCGTTGCTCTTGACTCGCCA AATGCTCACATTGCTGGGTCTCGTGCCCGCTTTTGGTCACGCAAGCTCAGTCATTCCGAGGAATA GACCCCATGCAAATTGCGGAGGGTCGTCGCGGGGTCTTCGGACTC Right flanking sequence: Indices 14174356 -- 14174855 GGCAAATGTTTCAAATTGCCATCGGCTCGGTATTGTTGGTAGCCGGAGTCGGTAAACTGTGTGTT GCTGCAGTTCGTGACAGTTTTTAGCAATTACCCGGATGGGCCGGAACGCGACAAAGTCGAAGACC CATCTGGTCGGTCGACTGACCATTGTTTTAGCGGTTAGTAACCCCACACGGAGTTCACTTGCGAA TTGACAGCAGTCTCCCGGGATTTCTAAAAGTATCTGGACTGAACTTACTACCCTTTTAATTGATG TGCATTCCCAACGTTTCCACACCCCCCGTTAGACCTATTTGCGATTTTTCTTTCATATTTTTTAG CGAAAAAATCGAAAGCTCAAAGCATTTCGCCTTGCATGCCCAACTGATGCACTCAAATGCGCAGG CGAAGCCGCAGCGAAATGAGAAGAAAATGTATCCAAAAACCGCCGAGCAAATTAAAATTTATTAT TTGCAACAAAACGAAGCACTTTGGGTGCCGCGAAGAGGCGAATGG Found at i:14174945 original size:9 final size:9 Alignment explanation
Indices: 14174931--14174948 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 14174921 GTGTTTTTCT 14174931 TTTACTGCA 1 TTTACTGCA 14174940 TTTACTGCA 1 TTTACTGCA 14174949 ACTCTTGTTC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44 Consensus pattern (9 bp): TTTACTGCA Left flanking sequence: Indices 14174431 -- 14174930 GTGACAGTTTTTAGCAATTACCCGGATGGGCCGGAACGCGACAAAGTCGAAGACCCATCTGGTCG GTCGACTGACCATTGTTTTAGCGGTTAGTAACCCCACACGGAGTTCACTTGCGAATTGACAGCAG TCTCCCGGGATTTCTAAAAGTATCTGGACTGAACTTACTACCCTTTTAATTGATGTGCATTCCCA ACGTTTCCACACCCCCCGTTAGACCTATTTGCGATTTTTCTTTCATATTTTTTAGCGAAAAAATC GAAAGCTCAAAGCATTTCGCCTTGCATGCCCAACTGATGCACTCAAATGCGCAGGCGAAGCCGCA GCGAAATGAGAAGAAAATGTATCCAAAAACCGCCGAGCAAATTAAAATTTATTATTTGCAACAAA ACGAAGCACTTTGGGTGCCGCGAAGAGGCGAATGGAAATGCAACTGAAATGCCAGCTATGGAACT TCTGCGGTGCAGAAAATCACCGAAGCTTGCGAAAAGTGTTTTTCT Right flanking sequence: Indices 14174949 -- 14175448 ACTCTTGTTCAGTTTTCTTCACTCCATGCCGCCAACCAACCGAAAGTGGCTGACAGAGGCTGCGG GAGTTTGGGCCCCATGGTGTACTGTACTGGGGTATTCGGTCTGTCGGTGGCGATAATGTGGCATG AAGCAGCCAACTGAAGTGCGAAGTGGGTTGCTGCAAGTCGGGGGCGTGTTCGGACCTGACAGGTA CTAAGCAGAGCATCTCCCTCGCCGAGGGCTTTGACTTCCTGCCCAGGGAACATACGCGAAGGTGG AAAGTGCCCAAGGAGTTGCATCAGCGGCGGCTAAGTATGACAGCCCTGGATGTAACCATGATCAT TTAGAGCGATGTTTGTTAAGGAAACCAAAGTTTTTTAGTGAATTGTAAAATGTAAAACATTAAAC ATTAAACAACAAATGTTGCAATAACTACTTTAAATCATTTTTAAATAATTTATTTATGTATCCTT ACTCTCGTCATTTTCCAGCCAAGCGTTGTTATAGATTTGATTATC Found at i:14175329 original size:7 final size:7 Alignment explanation
Indices: 14175317--14175330 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 14175307 TTTAGTGAAT 14175317 TGTAAAA 1 TGTAAAA 14175324 TGTAAAA 1 TGTAAAA 14175331 CATTAAACAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29 Consensus pattern (7 bp): TGTAAAA Left flanking sequence: Indices 14174817 -- 14175316 CAAAACGAAGCACTTTGGGTGCCGCGAAGAGGCGAATGGAAATGCAACTGAAATGCCAGCTATGG AACTTCTGCGGTGCAGAAAATCACCGAAGCTTGCGAAAAGTGTTTTTCTTTTACTGCATTTACTG CAACTCTTGTTCAGTTTTCTTCACTCCATGCCGCCAACCAACCGAAAGTGGCTGACAGAGGCTGC GGGAGTTTGGGCCCCATGGTGTACTGTACTGGGGTATTCGGTCTGTCGGTGGCGATAATGTGGCA TGAAGCAGCCAACTGAAGTGCGAAGTGGGTTGCTGCAAGTCGGGGGCGTGTTCGGACCTGACAGG TACTAAGCAGAGCATCTCCCTCGCCGAGGGCTTTGACTTCCTGCCCAGGGAACATACGCGAAGGT GGAAAGTGCCCAAGGAGTTGCATCAGCGGCGGCTAAGTATGACAGCCCTGGATGTAACCATGATC ATTTAGAGCGATGTTTGTTAAGGAAACCAAAGTTTTTTAGTGAAT Right flanking sequence: Indices 14175331 -- 14175830 CATTAAACATTAAACAACAAATGTTGCAATAACTACTTTAAATCATTTTTAAATAATTTATTTAT GTATCCTTACTCTCGTCATTTTCCAGCCAAGCGTTGTTATAGATTTGATTATCTTCTTGCTTTCC AGGAAGATTCTTATTTCCCACGACCTTTTACCTTTTGCTGACTAGCCCGAGGGTTATTACCATGC ATACCAGAGAAAAGTAAAATCGTTATCTGAACTTTTCCATTACACCACGGCAAACCGCAAAATGT CATTAAATAATTTCGCTGCGCATTTGCAGTGCTCAAAAGCACAAAAATAAAGTGCAAATCGATGG ACAAGTTTTCGGTGCTTTGAGGCAGAGCAGGCGGCTCAATAGTACTGTGACTCCCACCTCGCCAG CTAAAAAGGAAAAACACACACACAAATTATGCAACTCCACGTCGGCTTGGCTTGCAACATCTCCG GGCAGACCAACCCGACCCGTCCACCAGTTGCAGATGCCATTGCAG Found at i:14175338 original size:7 final size:7 Alignment explanation
Indices: 14175328--14175346 Score: 38 Period size: 7 Copynumber: 2.7 Consensus size: 7 14175318 GTAAAATGTA 14175328 AAACATT 1 AAACATT 14175335 AAACATT 1 AAACATT 14175342 AAACA 1 AAACA 14175347 ACAAATGTTG Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.63, C:0.16, G:0.00, T:0.21 Consensus pattern (7 bp): AAACATT Left flanking sequence: Indices 14174828 -- 14175327 ACTTTGGGTGCCGCGAAGAGGCGAATGGAAATGCAACTGAAATGCCAGCTATGGAACTTCTGCGG TGCAGAAAATCACCGAAGCTTGCGAAAAGTGTTTTTCTTTTACTGCATTTACTGCAACTCTTGTT CAGTTTTCTTCACTCCATGCCGCCAACCAACCGAAAGTGGCTGACAGAGGCTGCGGGAGTTTGGG CCCCATGGTGTACTGTACTGGGGTATTCGGTCTGTCGGTGGCGATAATGTGGCATGAAGCAGCCA ACTGAAGTGCGAAGTGGGTTGCTGCAAGTCGGGGGCGTGTTCGGACCTGACAGGTACTAAGCAGA GCATCTCCCTCGCCGAGGGCTTTGACTTCCTGCCCAGGGAACATACGCGAAGGTGGAAAGTGCCC AAGGAGTTGCATCAGCGGCGGCTAAGTATGACAGCCCTGGATGTAACCATGATCATTTAGAGCGA TGTTTGTTAAGGAAACCAAAGTTTTTTAGTGAATTGTAAAATGTA Right flanking sequence: Indices 14175347 -- 14175846 ACAAATGTTGCAATAACTACTTTAAATCATTTTTAAATAATTTATTTATGTATCCTTACTCTCGT CATTTTCCAGCCAAGCGTTGTTATAGATTTGATTATCTTCTTGCTTTCCAGGAAGATTCTTATTT CCCACGACCTTTTACCTTTTGCTGACTAGCCCGAGGGTTATTACCATGCATACCAGAGAAAAGTA AAATCGTTATCTGAACTTTTCCATTACACCACGGCAAACCGCAAAATGTCATTAAATAATTTCGC TGCGCATTTGCAGTGCTCAAAAGCACAAAAATAAAGTGCAAATCGATGGACAAGTTTTCGGTGCT TTGAGGCAGAGCAGGCGGCTCAATAGTACTGTGACTCCCACCTCGCCAGCTAAAAAGGAAAAACA CACACACAAATTATGCAACTCCACGTCGGCTTGGCTTGCAACATCTCCGGGCAGACCAACCCGAC CCGTCCACCAGTTGCAGATGCCATTGCAGCAGCAGCAGCAGCAGC Found at i:14175495 original size:7 final size:7 Alignment explanation
Indices: 14175483--14175496 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 14175473 ATTTCCCACG 14175483 ACCTTTT 1 ACCTTTT 14175490 ACCTTTT 1 ACCTTTT 14175497 GCTGACTAGC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.29, G:0.00, T:0.57 Consensus pattern (7 bp): ACCTTTT Left flanking sequence: Indices 14174983 -- 14175482 ACCAACCGAAAGTGGCTGACAGAGGCTGCGGGAGTTTGGGCCCCATGGTGTACTGTACTGGGGTA TTCGGTCTGTCGGTGGCGATAATGTGGCATGAAGCAGCCAACTGAAGTGCGAAGTGGGTTGCTGC AAGTCGGGGGCGTGTTCGGACCTGACAGGTACTAAGCAGAGCATCTCCCTCGCCGAGGGCTTTGA CTTCCTGCCCAGGGAACATACGCGAAGGTGGAAAGTGCCCAAGGAGTTGCATCAGCGGCGGCTAA GTATGACAGCCCTGGATGTAACCATGATCATTTAGAGCGATGTTTGTTAAGGAAACCAAAGTTTT TTAGTGAATTGTAAAATGTAAAACATTAAACATTAAACAACAAATGTTGCAATAACTACTTTAAA TCATTTTTAAATAATTTATTTATGTATCCTTACTCTCGTCATTTTCCAGCCAAGCGTTGTTATAG ATTTGATTATCTTCTTGCTTTCCAGGAAGATTCTTATTTCCCACG Right flanking sequence: Indices 14175497 -- 14175996 GCTGACTAGCCCGAGGGTTATTACCATGCATACCAGAGAAAAGTAAAATCGTTATCTGAACTTTT CCATTACACCACGGCAAACCGCAAAATGTCATTAAATAATTTCGCTGCGCATTTGCAGTGCTCAA AAGCACAAAAATAAAGTGCAAATCGATGGACAAGTTTTCGGTGCTTTGAGGCAGAGCAGGCGGCT CAATAGTACTGTGACTCCCACCTCGCCAGCTAAAAAGGAAAAACACACACACAAATTATGCAACT CCACGTCGGCTTGGCTTGCAACATCTCCGGGCAGACCAACCCGACCCGTCCACCAGTTGCAGATG CCATTGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGGCAGCAGCAAACTGCAGCATGCAGCACCAT CGGCTGGTTGAAAATCTTGTTTTGGGAACTGCAAGCCAGCCGCAGCAACAAACGCTTCTTCATTT TCGCGCAATAAACATTTCGCCCCAGTCACAAAGGCACAGCAACAA Found at i:14176254 original size:9 final size:9 Alignment explanation
Indices: 14176242--14176264 Score: 39 Period size: 9 Copynumber: 2.6 Consensus size: 9 14176232 TGCTGCACTT 14176242 GGTACTGTC 1 GGTACTGTC * 14176251 GGTACTGTT 1 GGTACTGTC 14176260 GGTAC 1 GGTAC 14176265 GGTGATGGTG Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 9 13 1.00 ACGTcount: A:0.13, C:0.17, G:0.35, T:0.35 Consensus pattern (9 bp): GGTACTGTC Left flanking sequence: Indices 14175742 -- 14176241 ACAAATTATGCAACTCCACGTCGGCTTGGCTTGCAACATCTCCGGGCAGACCAACCCGACCCGTC CACCAGTTGCAGATGCCATTGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGGCAGCAGCAAACTGC AGCATGCAGCACCATCGGCTGGTTGAAAATCTTGTTTTGGGAACTGCAAGCCAGCCGCAGCAACA AACGCTTCTTCATTTTCGCGCAATAAACATTTCGCCCCAGTCACAAAGGCACAGCAACAATAAGA AAACGAAAGTGCAACAACACCGTGCCACAACGGGTTGCCCAGTTTGAACCAAGCCGTTGGGCTTG GCTATTGCCTATGCTATTGCTATTGCTATTGCATTACGTGCGGTTGGTTCCTCGCCGAGGATCGT TTGACTTTTGGCCATATTTGCGTTGAGTTATGGCGAGAAAGAAGATGCAGCTGAACAAACCCGTT TCACGTGGCGTATGAGTAACGCGGAAGTTGACACTTGCTGCACTT Right flanking sequence: Indices 14176265 -- 14176764 GGTGATGGTGGGTGAAAATTGCCTTGATATATTTACTATTTACTTCACATACCACAGATAATTGC GGCATTCGTCAGGCGACTTGCAACGTGCCACATCCAATTCCTATTTGTCGTCACTTGCAATTAGG CAACAAAAAGCTTTGACAAAACCCATTTTGTTTTATATTTTTTTTGGTTGGCCAATCCAAGTGAC TTTTAATGACCTGCCAGAAAATAAGCCATCCGGATGGTATGTCAATATCAAACGATGATTTATGT CGCCGAGCCCTTTTACTTTCTTTTTCCTCATCCCAGACGTCGTTTTAACGATCCCACCAGTTGCC ATGTGAAATTATTGTTTATAGGTAATAGCATTTTTATTTTTCACTAAGCTAATTTCTGACGATCG TTTCCATGAAACTATGCGGAACCAAGCCTGTGGTTTACTGACCATGTTAATGGCTTAATAATTGA GAAGTTCGCTGGGGAAATGAGGAACTATAGAAAGCGGAAGATGCC Found at i:14176306 original size:7 final size:7 Alignment explanation
Indices: 14176294--14176308 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 14176284 TGCCTTGATA 14176294 TATTTAC 1 TATTTAC 14176301 TATTTAC 1 TATTTAC 14176308 T 1 T 14176309 TCACATACCA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.27, C:0.13, G:0.00, T:0.60 Consensus pattern (7 bp): TATTTAC Left flanking sequence: Indices 14175794 -- 14176293 AACCCGACCCGTCCACCAGTTGCAGATGCCATTGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGGC AGCAGCAAACTGCAGCATGCAGCACCATCGGCTGGTTGAAAATCTTGTTTTGGGAACTGCAAGCC AGCCGCAGCAACAAACGCTTCTTCATTTTCGCGCAATAAACATTTCGCCCCAGTCACAAAGGCAC AGCAACAATAAGAAAACGAAAGTGCAACAACACCGTGCCACAACGGGTTGCCCAGTTTGAACCAA GCCGTTGGGCTTGGCTATTGCCTATGCTATTGCTATTGCTATTGCATTACGTGCGGTTGGTTCCT CGCCGAGGATCGTTTGACTTTTGGCCATATTTGCGTTGAGTTATGGCGAGAAAGAAGATGCAGCT GAACAAACCCGTTTCACGTGGCGTATGAGTAACGCGGAAGTTGACACTTGCTGCACTTGGTACTG TCGGTACTGTTGGTACGGTGATGGTGGGTGAAAATTGCCTTGATA Right flanking sequence: Indices 14176309 -- 14176808 TCACATACCACAGATAATTGCGGCATTCGTCAGGCGACTTGCAACGTGCCACATCCAATTCCTAT TTGTCGTCACTTGCAATTAGGCAACAAAAAGCTTTGACAAAACCCATTTTGTTTTATATTTTTTT TGGTTGGCCAATCCAAGTGACTTTTAATGACCTGCCAGAAAATAAGCCATCCGGATGGTATGTCA ATATCAAACGATGATTTATGTCGCCGAGCCCTTTTACTTTCTTTTTCCTCATCCCAGACGTCGTT TTAACGATCCCACCAGTTGCCATGTGAAATTATTGTTTATAGGTAATAGCATTTTTATTTTTCAC TAAGCTAATTTCTGACGATCGTTTCCATGAAACTATGCGGAACCAAGCCTGTGGTTTACTGACCA TGTTAATGGCTTAATAATTGAGAAGTTCGCTGGGGAAATGAGGAACTATAGAAAGCGGAAGATGC CATGAACCCCTCCTAGACGGCGGGAGATCCGCAATTCTCGGAAGA Found at i:14178330 original size:8 final size:8 Alignment explanation
Indices: 14178314--14178330 Score: 27 Period size: 8 Copynumber: 2.1 Consensus size: 8 14178304 TATGTTAACT * 14178314 AAAACCAA 1 AAAAACAA 14178322 AAAAACAA 1 AAAAACAA 14178330 A 1 A 14178331 CAGCAAAACG Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00 Consensus pattern (8 bp): AAAAACAA Left flanking sequence: Indices 14177814 -- 14178313 TGTTGTTGCTGCGACAACAAAAGCCGCTCCGAAATCGAACAGGTTGTAGGGTCCCCGTCACAAAA ATATGAAATTATTACCCGCCGCAAGTCAATGAGAAATGTCTGCTGTATTTATTACCAGCTCGGGG CTACATTTAATCGTATATGATAAGCGGCTATACCATGGGAAGCTTAATTCCGGCATTTATTGTTT GCCTTCGAAACAAAAAGAGTGAATTTATGTGATGAGCAGCAATTTGGCAGCGGTTTCATAACAAT CCAAAATTTATAGATACGTTAAAAGATTTCCTAATTGTGTGATGCATTATGTGATGTGATAGGTG TGAAAAAGCGTCTTCAATAAATGAAATTACCTTCCAATCTATTGAAATAGCAATCTCAGAATGGG ATCTATGATCTTCGCTGGCTGTGTTCTTTTCGAGCATATAGGAAGTACATTATATTTGCCCCAAC AAAAGTGAAAGCAAGTCAGGTAAAATACACATAAATATGTTAACT Right flanking sequence: Indices 14178331 -- 14178830 CAGCAAAACGAAACAAACGAGAAACCAACAATTTGGCAGGCCCAGAAAAACATGTTCGCAGACAG CAAATCGCTGTTTCTGCCGGGATGCGGATTTCTGCTGCTGCGCCTGTGCCGTGAACTATGGAACT TGCGACTGGACATGGACGATGGGCAACAGATGGTACTGAGTAGTTGACTGCCGGGCTGCCAAGTT TACACGACACAACTGCAAGCGCTACGTGAGGCAATGTATACAAAATAATAAAAGTTCAAATTAAG CAATAGCAAAAAAAAAAAAACGGGAAAAATCAACCGAAAAGAAATTTAACAGCCACCAATAAGCC GACAAATCCCGAATAGCAACAAAAGTCTCCCAGGCCAGCCAATGCAACATCAGCCAGTTCCTGTT CATGGCCAGACAAAAGGAAGATGATGATACTTTTTTCTTTAGCAGGCTTAGTTGCTTGGCCAAAA AGTAAAAAATTGTTAAGATGCAATCGCAGGCCATTGCCACAGCTT Found at i:14180109 original size:7 final size:7 Alignment explanation
Indices: 14180097--14180110 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 14180087 GCCTTTGTCT 14180097 TGTGGAA 1 TGTGGAA 14180104 TGTGGAA 1 TGTGGAA 14180111 CATCAGCGAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.00, G:0.43, T:0.29 Consensus pattern (7 bp): TGTGGAA Left flanking sequence: Indices 14179597 -- 14180096 AAGATAAAAATATTTTTGTGAAAAGGGAAAGTTCATTGAGGCGTTGAAAATCGTTTTCGTTTTCA GTTGCGGTCCTAAACGTTCCAACAATTAATATTGAAATCCCAAAACAAATATTTAAATAATTGAA TTTTTAAATAGACTGTGGAACTTGGGAGCTCCAACTGCGATCAGTCAGGGGGTTATCTTATTGAT AGAAAGTCTTATGCAAGTCTGGGGAATTTCTGTGATAGGCGCTCCGAAATCTTTGACCGTTTGGT ATATTTATGCGAGTACTACTCAACGCATGGCAACTTTCTTTGGCCGAGACTCGAAAAGATCTGAA AACTGTGTCAATTTGGTTGGGACAAACGAAGAGTCCCACAAAGCCAGAGATCTAACAATGAATAT TTGCATATCGTTCAATGGAAATGCAAATTAAGTGATAAACATTTTTTCTCTATTTCTATGATTAT TTGGCACATATTTGGGATGACGTTTATGAGGCATTGCCTTTGTCT Right flanking sequence: Indices 14180111 -- 14180610 CATCAGCGATATACGATACAACAACAAAACAATTATTGAAATGATCGATTCAGGTCAATTTATTT TCCTTGATCATTTTGTATTTCCCAACTTACCCCATTGTGAAGGCCGACATTGGGTGGTGGTATAA ATCCTTGTGCATTCGCGGTGACCACCCACAGGCACAAAGTGCCCCACAGTGCCAAAGAGACCCTC ATGATTCACTCGGGAATTCCAGATATGCTATATATTTCCTCCGTTAACTATTAATGTTTTCTCAA TTGATCCGATATCAATGCACTATTTTCTTTTAAAACAAACACGATACCGCTGCCAAATATCCCAT GAAAAAAGGGGGCGCACGAAAAAATGTCAGTTATGCGACGCGAAATGATAACACTAAATCCAAAT CAACTTGGTACGAAGTTATTTTCGTTACGTTTTCTATTTGCTTTATGCAAATGATGCAGTTTTCT TCGCTCTTGGTTTTAAAATTCCGTTAACGTTTGAGCCGCGTTTGG Found at i:14183161 original size:8 final size:8 Alignment explanation
Indices: 14183148--14183163 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 14183138 CATGGACCCG 14183148 AAACCGAA 1 AAACCGAA 14183156 AAACCGAA 1 AAACCGAA 14183164 CCCGACCTGC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.25, G:0.12, T:0.00 Consensus pattern (8 bp): AAACCGAA Left flanking sequence: Indices 14182648 -- 14183147 GCATCCTAAATCACTAAGCTGACCTCTGACAATCACATCTACGGTTTTTGCACTTCAGTTTTATG TCGCCTGCTTAACAAATCAGTTTCTTGGGAAAATAAAAAAAAATAAATATAATCATATGAGGGCC TACAGAACTGTCCCAAGGCATTGAAAAACGGATTTTAACCATTTGCACCTATAAAATCTAGTTAA AGATCTTGATGAATGGGTAACCAACGAACAGTTAATATGCCTGCTCGAAATTAACCAAAAAACAA AAGCCATTGCCAGACGGACGGACAACAAAAACTGAAACACCGAAAAAAGACTAAATGCTTTACAA ATACCCAACAACAAAACGCTCGGGGGGAAAGACTTTCACCTTGCGACGTACGATCAAAAGAAAGA AGCAAAGAAATGTATATGAGGGGAAGAGCAAAAGAAAAAAAAAAGCTAAGAAAAAGGCAGTCAAG CCAAGGCAGAAGCGGCCTTCGAGATACCCAGATGCCATGGACCCG Right flanking sequence: Indices 14183164 -- 14183663 CCCGACCTGCAGTGGCCTCCACCTGGCAACAACAAGTGGGCAACCCGACGATCATGATCATGATC ATCATCAGCAGGCGCTGAAGAAGCCACCATCGTACGTCAATAAACCTTTGACTCAATGACGCTTA CGATCGCCCGGGCTTTTATCACTCGATCCAAGACCCTCACAGGGAATTGTGGTTGGTGTGTGAAC GTTCGTCAGCTGGCACCTTTTACTTTTCATTCAAGAACGGGTCGGGTATTGGGATTAAGTCATAC AGATGCGGTTGATCCGCTGCGTGTACTTAGAATTCTACTTTCCCCGAAATCTTTCGGACTTGTTA ACCCCCACGCAAACACTTGGGAATCAAAAGTGAAAACAAAACGCTTGGGCATTTGAAGCTGTCAA AGTTTTGGAACAGGCCAGTACAGTCGGACTTATTCGCTGCTTAACACATTTGTTCAAATCATTTA GGATAATCGGCGACTATTTATTAAGCAACTATTGACACTGTCCAT Found at i:14184916 original size:8 final size:7 Alignment explanation
Indices: 14184903--14184922 Score: 31 Period size: 8 Copynumber: 2.7 Consensus size: 7 14184893 TTATCTAAAC 14184903 TTACAGG 1 TTACAGG 14184910 ATTACAGG 1 -TTACAGG 14184918 TTACA 1 TTACA 14184923 AACTTCGTTC Statistics Matches: 12, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 7 5 0.42 8 7 0.58 ACGTcount: A:0.35, C:0.15, G:0.20, T:0.30 Consensus pattern (7 bp): TTACAGG Left flanking sequence: Indices 14184403 -- 14184902 CGCGCAGCCTGGAAGTAGGCAACCGATATTTTTATAAGGCCGATCAAATTTGAAATAAATACCGC ACAATATTTTGAGTACATACTTTTTCATTTATTTTTTGAAATTCTTGTAATTGTAATTGATTACA TGTTGTTTTTCTTGATCTATACAATTAATATGCGTCATTAATTTAAAATTGATATATCCGTACGT ATATATTTATAATTAAAGGTTTATCATTGTTTTTAATTAATACTAAACGTTAAATTCGAACACAC TTTGTAAAACAATTTTTGCAATTGGATTTGTTTTGTTTTTTGTCAAAATTTATAATAAACCCATA AAGAAAGTATAAGACATAATTATGACAAGTGGCAGAGAAAACTTTTACAAATAATACGAAACAAG CTCCAAAGGATCGCAGCTTTGTATATATAGGCTTAGGCATTGTAGTCCTATGTGATATATATTCA AAAGTTATGAGCAAAAATTGCAATTGTGTACAGTGTTATCTAAAC Right flanking sequence: Indices 14184923 -- 14185422 AACTTCGTTCAAATTACAGTCTGGATTTGGTAAGCAATCTTACCCAGCTCAAGTTCATATCAAAC TGTCTGCCGTCTTGTTTCATCTTCAATACACAAACTTTAATTTGGATAAAACATTTTTATTTGTT TTCTTTTGCTTTTGTCGCCACTAATACAGTTTACTTAGATGTGGCGCACTACAATTATTGTATAT TGGATTGTTTATTATTCGGTTGTGATATTGGCCATATTTTTTTTTCAATCCGTCTAGTTTTAATA GATTTATAGTTTTTAAATATGTGTTTTCATTAAATTATGACATGTATTCCGTATGGATTGGTTTA ATGGGATCAAGTATATGTATCCAAGCGGAATTCAAATTTATCTTGCATTGGCAGGCTACAGAGTT GATTTCCTGTAGTGTGATGTATGATATTGGCCAACGAACCTCCAAGATCTTAAACTACGCATACA ATTACAGTTAAGATATAGATACATTTCTGTTTCGCATATGTAACT Found at i:14185197 original size:9 final size:9 Alignment explanation
Indices: 14185172--14185197 Score: 31 Period size: 9 Copynumber: 3.0 Consensus size: 9 14185162 TCAATCCGTC * 14185172 TAGTTTTAA 1 TAGTTTTTA * 14185181 TAG-ATTTA 1 TAGTTTTTA 14185189 TAGTTTTTA 1 TAGTTTTTA 14185198 AATATGTGTT Statistics Matches: 13, Mismatches: 3, Indels: 2 0.72 0.17 0.11 Matches are distributed among these distances: 8 6 0.46 9 7 0.54 ACGTcount: A:0.31, C:0.00, G:0.12, T:0.58 Consensus pattern (9 bp): TAGTTTTTA Left flanking sequence: Indices 14184672 -- 14185171 CAATTTTTGCAATTGGATTTGTTTTGTTTTTTGTCAAAATTTATAATAAACCCATAAAGAAAGTA TAAGACATAATTATGACAAGTGGCAGAGAAAACTTTTACAAATAATACGAAACAAGCTCCAAAGG ATCGCAGCTTTGTATATATAGGCTTAGGCATTGTAGTCCTATGTGATATATATTCAAAAGTTATG AGCAAAAATTGCAATTGTGTACAGTGTTATCTAAACTTACAGGATTACAGGTTACAAACTTCGTT CAAATTACAGTCTGGATTTGGTAAGCAATCTTACCCAGCTCAAGTTCATATCAAACTGTCTGCCG TCTTGTTTCATCTTCAATACACAAACTTTAATTTGGATAAAACATTTTTATTTGTTTTCTTTTGC TTTTGTCGCCACTAATACAGTTTACTTAGATGTGGCGCACTACAATTATTGTATATTGGATTGTT TATTATTCGGTTGTGATATTGGCCATATTTTTTTTTCAATCCGTC Right flanking sequence: Indices 14185198 -- 14185697 AATATGTGTTTTCATTAAATTATGACATGTATTCCGTATGGATTGGTTTAATGGGATCAAGTATA TGTATCCAAGCGGAATTCAAATTTATCTTGCATTGGCAGGCTACAGAGTTGATTTCCTGTAGTGT GATGTATGATATTGGCCAACGAACCTCCAAGATCTTAAACTACGCATACAATTACAGTTAAGATA TAGATACATTTCTGTTTCGCATATGTAACTAATAACAGCCTTGATACTGTTGCAAAAGACATGGA AGCTGTATGAAATTGTTACAGATTTGAGTCGTAACCCCTAAAATATGTATGTATCTTTGAGTTCG GGTGATTGGATGCGTTGGGTGAATCGTTACAAATGTTGTCTACAACTATGTTTAGTATATGCCAT ATCTAATAAACTATATCTAGGTTATCTTGTTCCTTTGAGCTGGCTTCTGTTTCGTTTCTTTTGTT TTTATCTTTGATGGTTTGTTCATTTTGAATACAGTGTAAAAGGAT Found at i:14186258 original size:9 final size:9 Alignment explanation
Indices: 14186246--14186263 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 14186236 GCTGCCCACC 14186246 ATGGTGGTG 1 ATGGTGGTG 14186255 ATGGTGGTG 1 ATGGTGGTG 14186264 CGTGGTCGTT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.11, C:0.00, G:0.56, T:0.33 Consensus pattern (9 bp): ATGGTGGTG Left flanking sequence: Indices 14185746 -- 14186245 GTGAATACGATTTTGAATACCTTTAGCTATGGCAGTAGCGAAATAAAATAGGGTTCAGGGCAACT GAGAATACTGCAAAGTGCTTCAAAAAGGTACTCCCTTCTAGCTAGATGCAACTATTTCGAGTGGG GAAGGGATTATCAGGAGCAAGTGGTTGTACAACAGCATGCACTCGCATTCAAATACAATTCACAC ACGTCTAGAATTCCTATATAGCTTACATACAACAATATACCTAAATCTACGTGCGAGGAGCCCTA TTCCATCGGCTACTCCTCGTCCCGCTCCTTAACATCAGCGCAGTGCTGTGGACGCCACTTCTAGC TCCAGAAGTCCATCATGTTGACCAGCTTGCACTTCTTCAGCTCCAGCTTGGTGGGCCTTGCCCGA AGTCAAGCTCTCCCAAAGATGGCCCTGTCGGAAACATCTCCAGTGGACTGTGAGTGCGACATGGC CATGGTGGATGCTCCCGACGACGACTGCTGTTGCTGCTGCCCACC Right flanking sequence: Indices 14186264 -- 14186763 CGTGGTCGTTGCAATGGTGGCAGTCGATGCATTGTGGTGCGTCACATTGTGATGGTTGTGCGCCA ACGTTGAGCTGCCGTATTTGGAAGACATGGCACCCACAATTCCACTGCCTGTACCGGGCAAATGT TTCCTGGTGGCCGCTGACGAGACATGGTGTGTGCTGCCACTACCCACTCCTCCGTAGATGCGGTG CAGTGAGTACTGCTGCACGGACTCCAGATCCGAGACGCTGGACGTGATCTTCGAGCGCACCGCCA CCTTCTGCATGCTATTGTACTTATCGCTGGCACTTAACTTGATGTCGGGCAGGTGTCCATTCGAT TGGGCATGGCCGTGACTCTGAGATGGCGGCTGCTGTCTCGACTTGGTTGTGGTAGCAATCGCGGC ATTGTGCACCGCCGTGGTGCTGGTGATCGAGGCCACCACGGGACCGTTGGTGCCCGGCGAGATCT CCGAAAAGCTGTAGCAGGAAGACTTCTGGGAAACACTGTTGAGTC Found at i:14187222 original size:7 final size:7 Alignment explanation
Indices: 14187210--14187227 Score: 29 Period size: 7 Copynumber: 2.6 Consensus size: 7 14187200 ATAATTAGTA * 14187210 TTGATTT 1 TTGATTC 14187217 TTGATTC 1 TTGATTC 14187224 TTGA 1 TTGA 14187228 GAGGAGGTCG Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.17, C:0.06, G:0.17, T:0.61 Consensus pattern (7 bp): TTGATTC Left flanking sequence: Indices 14186710 -- 14187209 GCGAGATCTCCGAAAAGCTGTAGCAGGAAGACTTCTGGGAAACACTGTTGAGTCCGGAACTGGAC GAACTGCTCGACATGCGGCAGCTGCGATGGCGACTGGAGGCAGATGGCTGCAGAAACTCGTGGTG GGCCGCCTCGTCCGGCGTCATCCGCTCCGCAGGATCCCACTCCAAGCAACGCTGCAGGAAGTCGA TGAAATAGCGGTCCTGGCAGTGCAAGATATGTGCCAGCGACTTGCTGCCTGGCGACCGTTTGCGT CCCTTGGTGTTAGTTATGCAGCGCGGGGCATCACGGGAATCAAAGAACAGCCGACGTCGCCTGGC AACCGATATGAGCACCTTAGGCGGCAAACCGAGCACCTCCATGATGCAGGCTAACTGCTCCACTT CATTTTCGCCAGGGAAGAGCGGGAATCCTGTGTACAGCTCGGCCAGAATGCAGCCTATGAAAAAT TGGAAAAAAGTAAGTAAGTAAGTAAGGGTTGACATATAATTAGTA Right flanking sequence: Indices 14187228 -- 14187727 GAGGAGGTCGCAAATAGCTGCAGTCATTTCGGGCAGGCAAACAGGCGCATTGACCTTGACTTTGT GGCATACACGTGTCTCCCCTTCCTTGTGTTCCAGATTATTTATTTCCTACTGCACTTTCTAATGG ACATTGAGACACGATGGTCAGGCAAGGCGAGATGTCACTGCAAGATGACCGAATCAAGGCCTTTG ACTGACATTTGAAGTCTCAAAATGTGGCTATTTATCTCGATTCACTAAATTAAATTGAATGGTAT AAAAGGACAAATGAGTAAGCTTTTTGTATACAAAACAAGTCTTCGTTTTAAACAAAGCTAGTCCT CCCATTAGCTTACAATTCATAAATTCTTAGAAAAAATGCCAAAGGACTTCGAGCAAGTTCAAAGG TGGTCTTGGTTTTAAAAGGAATGAAGTATTCTAATAAGCTGGTATATAAATAGATCCACAAATAA TTCTTTGTAAGCCCCAACCTTCAAATATTCGCATGAAAGGCCAAT Found at i:14188622 original size:8 final size:8 Alignment explanation
Indices: 14188606--14188622 Score: 27 Period size: 8 Copynumber: 2.1 Consensus size: 8 14188596 TTAATAGTTC 14188606 TTTGAAAG 1 TTTGAAAG * 14188614 TTTGTAAG 1 TTTGAAAG 14188622 T 1 T 14188623 GCTTCCTTCC Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.29, C:0.00, G:0.24, T:0.47 Consensus pattern (8 bp): TTTGAAAG Left flanking sequence: Indices 14188106 -- 14188605 CCACCGCAGGACCCCACGTCCGTGCGCACATTTAATGAGTCCATTGTTGTCGACGGAGCTCACGA TATTTTGCCATCGCTGCTCTTGCTGCTGACCGGACGTGGTTGTGGTCGGAAATGGGCGCTAAAAG GATGTGCACGATGAGGCCAGGAGTGGCTAAAAGTCCGCACTGGGCTGGGCAAAATTATTGTATAC ATAAACTTCGAGTGGGGCGCAACTTGTTGAGTGCGCCCCTTGACCCGCACCTCCGGTGGCTTCGT CGATATCTCATTGTTCGTTCGCTTGGAGGAGGTCCTTTTCCGCCTTCGCTTTTGCCTGTTGCTAC TAATTGGCCTAGTGCGTGTTCTTACACTTGGCTGAGCTTTTCGCTTTGGGCCAGGTCAATTGAAC GGGCAAAGTGGATAGCTTTAACTGACAGAAAAAGTGTTCTAAGAAGAACAACTAAGTAGATTTTC CGAATGAAAAAATATTAAAAATGTAGTGGCAAATTTTAATAGTTC Right flanking sequence: Indices 14188623 -- 14189122 GCTTCCTTCCGTATGACCTACAAAACGTGTCCACGTGCATTGAAACACACAAATGTTTAATATTT AATCCTTCCAACCTTCCATTACCTGCTATATTTATTGAGCCAACGTGTGTGGGCCATAAATTTGC CTGCCAAATGCAGGGCAAGCATTTAAAATTTCATTGCATCCTGCACATGTTTTCCAGTCCAATTG GGAACACAACCGTGCAGAATGTTTTTAATTAAAAGCTTACACTCACCCAAGCTCCACATATCGAT GGCTGTGCCGTATTGCAGGCCGAGAATCACCTCCGGGGAGCGATAGAACCTCGATTGGATGTACG TATAGATTTTGCGATCCACGTAGCATGAGCTGCCAAAGTCGATAACTTTAATGGAGCTGCTACCA CGCTGTTTGAGCAAGATATTTTCCTATTTCCGATAGAAGAGGCATTAAATATTGTAGTTAGAATT GAATCCAATGTACTTACCGGCTTGAGATCACAGTGAATAATGTTT Found at i:14188690 original size:7 final size:7 Alignment explanation
Indices: 14188674--14188690 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 14188664 GAAACACACA * 14188674 AATGTTT 1 AATATTT 14188681 AATATTT 1 AATATTT 14188688 AAT 1 AAT 14188691 CCTTCCAACC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53 Consensus pattern (7 bp): AATATTT Left flanking sequence: Indices 14188174 -- 14188673 TTTGCCATCGCTGCTCTTGCTGCTGACCGGACGTGGTTGTGGTCGGAAATGGGCGCTAAAAGGAT GTGCACGATGAGGCCAGGAGTGGCTAAAAGTCCGCACTGGGCTGGGCAAAATTATTGTATACATA AACTTCGAGTGGGGCGCAACTTGTTGAGTGCGCCCCTTGACCCGCACCTCCGGTGGCTTCGTCGA TATCTCATTGTTCGTTCGCTTGGAGGAGGTCCTTTTCCGCCTTCGCTTTTGCCTGTTGCTACTAA TTGGCCTAGTGCGTGTTCTTACACTTGGCTGAGCTTTTCGCTTTGGGCCAGGTCAATTGAACGGG CAAAGTGGATAGCTTTAACTGACAGAAAAAGTGTTCTAAGAAGAACAACTAAGTAGATTTTCCGA ATGAAAAAATATTAAAAATGTAGTGGCAAATTTTAATAGTTCTTTGAAAGTTTGTAAGTGCTTCC TTCCGTATGACCTACAAAACGTGTCCACGTGCATTGAAACACACA Right flanking sequence: Indices 14188691 -- 14189190 CCTTCCAACCTTCCATTACCTGCTATATTTATTGAGCCAACGTGTGTGGGCCATAAATTTGCCTG CCAAATGCAGGGCAAGCATTTAAAATTTCATTGCATCCTGCACATGTTTTCCAGTCCAATTGGGA ACACAACCGTGCAGAATGTTTTTAATTAAAAGCTTACACTCACCCAAGCTCCACATATCGATGGC TGTGCCGTATTGCAGGCCGAGAATCACCTCCGGGGAGCGATAGAACCTCGATTGGATGTACGTAT AGATTTTGCGATCCACGTAGCATGAGCTGCCAAAGTCGATAACTTTAATGGAGCTGCTACCACGC TGTTTGAGCAAGATATTTTCCTATTTCCGATAGAAGAGGCATTAAATATTGTAGTTAGAATTGAA TCCAATGTACTTACCGGCTTGAGATCACAGTGAATAATGTTTTCCTTATAGAGCAAACGCAGGCA CTTCACAATCGAGTTGCAGAAGCGTCGTATGAGACTCATGCTGAA Found at i:14191364 original size:6 final size:7 Alignment explanation
Indices: 14191353--14191370 Score: 29 Period size: 6 Copynumber: 2.7 Consensus size: 7 14191343 CCTGCGCCGT 14191353 TGCAAC- 1 TGCAACA 14191359 TGCAACA 1 TGCAACA 14191366 TGCAA 1 TGCAA 14191371 TTGTAACGAG Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 6 6 0.55 7 5 0.45 ACGTcount: A:0.39, C:0.28, G:0.17, T:0.17 Consensus pattern (7 bp): TGCAACA Left flanking sequence: Indices 14190853 -- 14191352 ATTGAGAAGGAGGCATCCAGCCCAGACCGCAAAGGTCACAGGCTTTTAATTTGAAAACTTTCATA TTGCAACTGGCGTCTGAGTAGAATGCCGAAATAGCAAACCTTAAAGAGAAAATAGCTTTAAGGAA CAGAAGAATATCGATTTTACAGCCACCCGAAATAGATGAGCTACTGTGGGAAAGGCAAAGCTTTC TTTGGCAAACAGACGAGTCTATAACAAACCAATAAGAAAATCATCAAAATGTCATAATTTCAATC GGCGAATCGGGACGAAATACATGTGTATGCTTAGAAGTCTGCATATTATAACTGCATTATGACAT GCCACACAATTGGCGACGGAGAGCCAATGCCAAAAGTCCATAAGTCTGCCATGAACTTGAAAATT GTTTTTTTTTTTCCTCCTATTTTGGGGCTGCCTGGGGCGCCATTTTCCGTTCCGCTTTTCCGTGC CGAAATTCCTCTGGTAATTTGATTGATTATTTGCCCCTGCGCCGT Right flanking sequence: Indices 14191371 -- 14191870 TTGTAACGAGCCACTAATGCCTTGCATTTAGCACACCAAAAATGGAACACAATAATGCCAAAAAA AAGCCAGTGAAAGTGAATTCGTATAAACAAAGTTGGGTAAATCGGATGACGCCCACAATAAACAA TGCATACAGATATACGGATTTGAAGGTCTTCATTGCCCAGACTTTGTTTAAACTTTATTTAATAA ATTTCCAATTGTTAAGACCTCAGTACTCTATTGCATATTTCATGGCTGTCAATTGCCACAGTTCT GGAAAAATAAACTTGTCTTCGTTGCGAGAATGGTGTCACCTTTTCTGAGTGAATGAAGGGAAAAA TTAACTTTTTCGTTGCCGTCGGGTAACTTTTAGCATAAATTTGAAATTGGTTTCCCTGCTGGCTG AAATCGAAAAGAGTGTGCCATTGATTGACAAGTGAGTGTGGTGTGGAAAAGCTGTCCTGTCTTCA TTTGCATAGCGAATTTTCACGTGTGAAGAATGTTGAAGGCGGAAT Found at i:14192360 original size:8 final size:8 Alignment explanation
Indices: 14192340--14192362 Score: 32 Period size: 8 Copynumber: 2.9 Consensus size: 8 14192330 CCACCGCGAA * 14192340 CTACCGTG 1 CTACAGTG 14192348 CTACAGTG 1 CTACAGTG * 14192356 GTACAGT 1 CTACAGT 14192363 CAAATAAGCT Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 8 13 1.00 ACGTcount: A:0.22, C:0.26, G:0.26, T:0.26 Consensus pattern (8 bp): CTACAGTG Left flanking sequence: Indices 14191840 -- 14192339 TTTCACGTGTGAAGAATGTTGAAGGCGGAATTAATTTTGCAGCAATCGATTCCACACGACACCAT TCGCATAGCACTAATGAGATTCTGGCCATAAAGTTTGACTACAGCTGTGCTTATATATTGCCTTA TTTTCTCGTTAATTCCCAAAATGACTATAAATATGCAGAATTAAGAGGCTTAACCAAAAGGATGC CTATCCATTAATGATGCTGTGTCCCTGGCTGGGACATTTGTGACCTTGCCTTTCATTCGCCCAAG GACCGGCTAAATTTTCTCACAAAAATATCCGTTTTTTTTTTTGCCCATCGCATTTTGCGGCATTT TAATTAGTCGACGGCTTACTTCGCAGTTGAACCGTAAATAATCTCAGAAATGCAGAGAAAAATTC CTGCCACAGCCCGGGGAAGTGGTGTGGAACTAGGGGCGAATTTACCTTTTAGTAGATGATAAATG ACTTGGCCTTGGCCATGTCAACTGGCTTCTATCTTCCACCGCGAA Right flanking sequence: Indices 14192363 -- 14192862 CAAATAAGCTGACTGCTCGGGAAATGTCAATTAGCAGTAATTACTGTGCCATGGTACGGCATAAT AATAACCTACATCAACATCCGTGGAACAGCTGACACCGACACTCCTTTGCCCCGCGTCCAAATGA AAATATCGCCCCCATCGAGTGTTTATTCTCCTGGTAACTCAATCCGCCGACTCGTCCTTGCCGCC CGTTCCTAATTGCGATTTACACGCGCTGAGTGCAAAAATTAATTAAAAAGAATAAACTTGCAGGA CCTGCTCATTTGCATGGTCACGCCCACAGCTCACGCACGCCGCATGTTGCATTTTAATTAAAAAT CATTTCGTCCTGTCGGCCCATCCGTTTGGCCCACATGACCAAAAGGCAGCGGAATGCCGACGACA TCCTGTCACCTTTCTATGTCACTCTCACGTTGTCAGCGGCCATGTCCTGGAACAGTCAATTACAT GGCTGATGACAGGCGGTCACATGCTGCATCTGTGCGACATTGATT Found at i:14192941 original size:8 final size:7 Alignment explanation
Indices: 14192923--14192943 Score: 33 Period size: 8 Copynumber: 2.9 Consensus size: 7 14192913 GATCGATTGG 14192923 AAAATAC 1 AAAATAC 14192930 AAAATCAC 1 AAAAT-AC 14192938 AAAATA 1 AAAATA 14192944 TGTGGTCAAT Statistics Matches: 13, Mismatches: 0, Indels: 2 0.87 0.00 0.13 Matches are distributed among these distances: 7 6 0.46 8 7 0.54 ACGTcount: A:0.71, C:0.14, G:0.00, T:0.14 Consensus pattern (7 bp): AAAATAC Left flanking sequence: Indices 14192423 -- 14192922 ATAATAATAACCTACATCAACATCCGTGGAACAGCTGACACCGACACTCCTTTGCCCCGCGTCCA AATGAAAATATCGCCCCCATCGAGTGTTTATTCTCCTGGTAACTCAATCCGCCGACTCGTCCTTG CCGCCCGTTCCTAATTGCGATTTACACGCGCTGAGTGCAAAAATTAATTAAAAAGAATAAACTTG CAGGACCTGCTCATTTGCATGGTCACGCCCACAGCTCACGCACGCCGCATGTTGCATTTTAATTA AAAATCATTTCGTCCTGTCGGCCCATCCGTTTGGCCCACATGACCAAAAGGCAGCGGAATGCCGA CGACATCCTGTCACCTTTCTATGTCACTCTCACGTTGTCAGCGGCCATGTCCTGGAACAGTCAAT TACATGGCTGATGACAGGCGGTCACATGCTGCATCTGTGCGACATTGATTGGCTTTGAAATGGAT AAGTCGACGAGGTTTGCAAAAAGCAATTGCTTTCCGATCGATTGG Right flanking sequence: Indices 14192944 -- 14193443 TGTGGTCAATATGTTGACTAATTACCTCAACTTAATCGACTTTAAGTGAACTCCCTCCGGACTTT TTAATTGCATTTTCGTTTCGTTTTTGGTTTAATTCGAATATGAAATTAGTAATCTCATTTATTTT ATCCCCCTGTCGATCAATATTTATTGCCAATTGCTTTATTTTATCAATAATGAGCAAATCCCCTT AAACTGTATGCACTCGTTAATTTGAGCAATAAATTCTGGGGTGATTATCGCCAACTTGATCTCCT TATGAGCCATTAAAATTGAAATCAAATCATGACACATTGCATAGCGAAAACCCGCCGAGTTGAGA GAGAGGAACGCAGTGACATTGGAGGCGGAGCAGTCAGGCGCGGCAGGACACTTTCCTCCCGGGCA ACATTAGCTGAAATTTATGTGCTTGACACACACCCACAGACACAAACTCACACACACACACACAC AGAGCGAATTTCGCTATATCCACGAGGCCACGAGGCTCGAGCATT Found at i:14193431 original size:8 final size:8 Alignment explanation
Indices: 14193418--14193434 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 14193408 TTCGCTATAT 14193418 CCACGAGG 1 CCACGAGG 14193426 CCACGAGG 1 CCACGAGG 14193434 C 1 C 14193435 TCGAGCATTT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.24, C:0.41, G:0.35, T:0.00 Consensus pattern (8 bp): CCACGAGG Left flanking sequence: Indices 14192918 -- 14193417 ATTGGAAAATACAAAATCACAAAATATGTGGTCAATATGTTGACTAATTACCTCAACTTAATCGA CTTTAAGTGAACTCCCTCCGGACTTTTTAATTGCATTTTCGTTTCGTTTTTGGTTTAATTCGAAT ATGAAATTAGTAATCTCATTTATTTTATCCCCCTGTCGATCAATATTTATTGCCAATTGCTTTAT TTTATCAATAATGAGCAAATCCCCTTAAACTGTATGCACTCGTTAATTTGAGCAATAAATTCTGG GGTGATTATCGCCAACTTGATCTCCTTATGAGCCATTAAAATTGAAATCAAATCATGACACATTG CATAGCGAAAACCCGCCGAGTTGAGAGAGAGGAACGCAGTGACATTGGAGGCGGAGCAGTCAGGC GCGGCAGGACACTTTCCTCCCGGGCAACATTAGCTGAAATTTATGTGCTTGACACACACCCACAG ACACAAACTCACACACACACACACACAGAGCGAATTTCGCTATAT Right flanking sequence: Indices 14193435 -- 14193934 TCGAGCATTTTCTTTTGGCCAAAAAGAAGCAGCGTCATTCTCGGTGGGACAATATGGTGCATAGT TATGGGGGCTCGGAATGTGTTGGCTGTCTTTGGCACTTTGGCAGCACTCATTTTATCGCTGTCGC TGTAAATTATGTGGCTCATAATGCTAGAACAAGACCAAAACACCCGACCGGCTGAAAATGTCACC TGCCAGGATCGTCGAATGTGGGAAATCATCCAAGTGTGTATGCGGTGTGTGTGTGCGAAATGTGT CACTTGGCGTCAATTTAGTTCCTCCCAGCCCAGGATGCTCATGCCGCCCTCATGCCGTCCTTTTT GCGAAATGAAGTCCTTGAATGTCTGTCTGTGTCGAGGTGAAATAAGTGTGTCACTTTAGGGACAC GGATTAGGTTTCATATTTGCGGACCGCAGTGGTGGTGTCCTTTTGCTAATTAGCTAATCAGATTG TGGGGCAGGCCTTCCACTGAAAATGTTTTCCCCATTCACAGAGCA Found at i:14193540 original size:8 final size:8 Alignment explanation
Indices: 14193527--14193542 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 14193517 TGTTGGCTGT 14193527 CTTTGGCA 1 CTTTGGCA 14193535 CTTTGGCA 1 CTTTGGCA 14193543 GCACTCATTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.12, C:0.25, G:0.25, T:0.38 Consensus pattern (8 bp): CTTTGGCA Left flanking sequence: Indices 14193027 -- 14193526 CGTTTTTGGTTTAATTCGAATATGAAATTAGTAATCTCATTTATTTTATCCCCCTGTCGATCAAT ATTTATTGCCAATTGCTTTATTTTATCAATAATGAGCAAATCCCCTTAAACTGTATGCACTCGTT AATTTGAGCAATAAATTCTGGGGTGATTATCGCCAACTTGATCTCCTTATGAGCCATTAAAATTG AAATCAAATCATGACACATTGCATAGCGAAAACCCGCCGAGTTGAGAGAGAGGAACGCAGTGACA TTGGAGGCGGAGCAGTCAGGCGCGGCAGGACACTTTCCTCCCGGGCAACATTAGCTGAAATTTAT GTGCTTGACACACACCCACAGACACAAACTCACACACACACACACACAGAGCGAATTTCGCTATA TCCACGAGGCCACGAGGCTCGAGCATTTTCTTTTGGCCAAAAAGAAGCAGCGTCATTCTCGGTGG GACAATATGGTGCATAGTTATGGGGGCTCGGAATGTGTTGGCTGT Right flanking sequence: Indices 14193543 -- 14194042 GCACTCATTTTATCGCTGTCGCTGTAAATTATGTGGCTCATAATGCTAGAACAAGACCAAAACAC CCGACCGGCTGAAAATGTCACCTGCCAGGATCGTCGAATGTGGGAAATCATCCAAGTGTGTATGC GGTGTGTGTGTGCGAAATGTGTCACTTGGCGTCAATTTAGTTCCTCCCAGCCCAGGATGCTCATG CCGCCCTCATGCCGTCCTTTTTGCGAAATGAAGTCCTTGAATGTCTGTCTGTGTCGAGGTGAAAT AAGTGTGTCACTTTAGGGACACGGATTAGGTTTCATATTTGCGGACCGCAGTGGTGGTGTCCTTT TGCTAATTAGCTAATCAGATTGTGGGGCAGGCCTTCCACTGAAAATGTTTTCCCCATTCACAGAG CACCACTGAATTTATCTCGTTAGAATTCTAAAGAAAATGTTTTTTTTCTCCTGATTTAATTAGTT TTTCAATTTCTATTAATTAAACGACAGGAAACCGGGCATTCCTCT Found at i:14194308 original size:8 final size:8 Alignment explanation
Indices: 14194295--14194312 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 14194285 AAAGCTGGAG * 14194295 AAAACATT 1 AAAACACT 14194303 AAAACACT 1 AAAACACT 14194311 AA 1 AA 14194313 GTGCTCACTC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.67, C:0.17, G:0.00, T:0.17 Consensus pattern (8 bp): AAAACACT Left flanking sequence: Indices 14193795 -- 14194294 GGTGAAATAAGTGTGTCACTTTAGGGACACGGATTAGGTTTCATATTTGCGGACCGCAGTGGTGG TGTCCTTTTGCTAATTAGCTAATCAGATTGTGGGGCAGGCCTTCCACTGAAAATGTTTTCCCCAT TCACAGAGCACCACTGAATTTATCTCGTTAGAATTCTAAAGAAAATGTTTTTTTTCTCCTGATTT AATTAGTTTTTCAATTTCTATTAATTAAACGACAGGAAACCGGGCATTCCTCTTCCATCTAAGCT CGACTAATCCTATCAGAGAAACTAAATCATTTCGTCGCAAGAAATTTTCCCAGCACGGCATGCAA ATTAAATTGCGTGCACGTAAATTTAATTACATAAAACTTGCCATACAATTTGTTTACTCGTTCAA AACAAACTTTAAAACTTGCCGCCGAGTTGTCAATGCGGTTCCCCGTTCCTCTGGTCACTCGCAGG CGAAAAAGTTTGCCCGCTGCAGGGAAAACTTCTTCAAAGCTGGAG Right flanking sequence: Indices 14194313 -- 14194812 GTGCTCACTCCAAACAAGAAATGGCAACGAAAAACAATTTTGCGGCTAATTAGTCGCAGAGCAAA TAATTAATTAAATTTGTTTAGCTGCCTTCGAGTGGGCTAAAAACGATTTAATTTTGTCTACCCAT CGATTTTTGACTGCGGCCCGCAAATTAGGGATCCCTTTTCGTTGATGGCGTGTCACGTGCCCATT TGAATTTAGAGACCCCAAAATCGGTTCTCAAAAATGTCAACTCGCAAGAAATGTTAGCTTGTATT TTTACTTTCATTTCTCTTCATTTTTTTTTTTTTTTGTCTGCAATTAAGACAAATTAGTCGTCCGT CGGCTGACGGAAATGTCAAGCTCAATGGGAAGAGTAGGTAAAATGGTAAATGGTAACTGGTAAAA GGAAAAAGGAAGCAACTTACAAGACCGCCGACCTTCGATGGTTGCTTTCTCAACTTTGACTGTTG CATCGCGTGACGCTTTCGTGCCTTCTTTGGGATTTATTTTTACCA Found at