TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_2L assembled 2004-4-6 md5checksum:29037f68a520aa000acffb8837e59820 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 22407834 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Warning! 100 characters in sequence are not A, C, G, or T Found at i: i:16762130 original size:7 final size:7 Alignment explanation
Indices: 16762118--16762131 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 16762108 CATTGAGGTG 16762118 ACCAAAA 1 ACCAAAA 16762125 ACCAAAA 1 ACCAAAA 16762132 CCAGAACAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.71, C:0.29, G:0.00, T:0.00 Consensus pattern (7 bp): ACCAAAA Left flanking sequence: Indices 16761618 -- 16762117 AATCGTATTTGTATTGGATTTTAGCATTGAAACCTAAAGATTTTCGCATCGCATTGCTCTGAAGG ACGCCGACTACATTGATTTGATGTGGCATTTCTCTGTCTATCTATCTATATCTAAAGTATCTCTT CAACTATGTGTTTTATTTCGTTTTTTTTGCGTGCATTGCAATTGCTTGCATGTTCTAGCCCATCT ATGTTATTTTGAAGTTCACATCATTACTTTTGGCGGACATGTGCTTGCTATGGCCGATCCTTAGG CTAGATAGATCATCAATCATTAACTCAAAGGATCGGGTTTTTTCGTTCTACAACTGAACGATGAC CAAACGAATGTTTGTAGCCATTGATAGCATACGATCGGTCTTCTCGAACAGCTGTTTAGCCACTG ATCGTAAAGTGATCGCAGATTAGGAGGAAAACCACATAGCGCCGCCTGATCGCAAGCATTCCCCC TGTATTCCACCCACATTGGTGCCAGATCGGATTGGCATTGAGGTG Right flanking sequence: Indices 16762132 -- 16762631 CCAGAACAAAAAGCGAAAAATGATCACCGAGAAAAACAAATAAAGATCCCACCATGCCATGCCAT ACACACATGTGTGCGTCTAGAAATGATATGTGAAATAAGTAAAAAGAAAGCTCCCCTTGGAAAGA GCGAGGGATTCCGGCGGAGAAGAATTGCCTCACGGCGGAAAAGTTGTCATTGAAATGAATTTTAC TATTTGACTAATGGGAGAATTGCGAGAGAGCCTACGCAATGGCAATCGTCGGAGAAGGAGCTTTC CGCTCTCGATTCCGCAACGATCCTGATTGCATCATATGCTCACACATATACCATATCCACCATCC CGCAATCCCCCATAGAAATGCCCACTTGCTAGAGAAGAGGAATAGGAATCAGAGCAGCCAAGTGC TAGACCGAAAAAGGGAGCAAGAAAAACCGAAACAGAAACAGCGCCACGCACACCGATCGTCGAAT CGAAAAGCTTTCGGGGTCTTACGGGATCCATGGGTATCAAGTTGC Found at i:16762336 original size:8 final size:8 Alignment explanation
Indices: 16762320--16762336 Score: 27 Period size: 8 Copynumber: 2.1 Consensus size: 8 16762310 ATTGAAATGA * 16762320 ATTTTACT 1 ATTTGACT 16762328 ATTTGACT 1 ATTTGACT 16762336 A 1 A 16762337 ATGGGAGAAT Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.29, C:0.12, G:0.06, T:0.53 Consensus pattern (8 bp): ATTTGACT Left flanking sequence: Indices 16761820 -- 16762319 TTTGAAGTTCACATCATTACTTTTGGCGGACATGTGCTTGCTATGGCCGATCCTTAGGCTAGATA GATCATCAATCATTAACTCAAAGGATCGGGTTTTTTCGTTCTACAACTGAACGATGACCAAACGA ATGTTTGTAGCCATTGATAGCATACGATCGGTCTTCTCGAACAGCTGTTTAGCCACTGATCGTAA AGTGATCGCAGATTAGGAGGAAAACCACATAGCGCCGCCTGATCGCAAGCATTCCCCCTGTATTC CACCCACATTGGTGCCAGATCGGATTGGCATTGAGGTGACCAAAAACCAAAACCAGAACAAAAAG CGAAAAATGATCACCGAGAAAAACAAATAAAGATCCCACCATGCCATGCCATACACACATGTGTG CGTCTAGAAATGATATGTGAAATAAGTAAAAAGAAAGCTCCCCTTGGAAAGAGCGAGGGATTCCG GCGGAGAAGAATTGCCTCACGGCGGAAAAGTTGTCATTGAAATGA Right flanking sequence: Indices 16762337 -- 16762836 ATGGGAGAATTGCGAGAGAGCCTACGCAATGGCAATCGTCGGAGAAGGAGCTTTCCGCTCTCGAT TCCGCAACGATCCTGATTGCATCATATGCTCACACATATACCATATCCACCATCCCGCAATCCCC CATAGAAATGCCCACTTGCTAGAGAAGAGGAATAGGAATCAGAGCAGCCAAGTGCTAGACCGAAA AAGGGAGCAAGAAAAACCGAAACAGAAACAGCGCCACGCACACCGATCGTCGAATCGAAAAGCTT TCGGGGTCTTACGGGATCCATGGGTATCAAGTTGCCCCGTATAAAAGGCAAGTTTACCGGTTGCA CGGTTCAGAACGGCTTTCGAGCGCGTAAGTGCAACACCTTTGATGTGCGATCTCTGATTTTTGGA TATTACCACCCAGCAGCAGTAGCGGTAGCAGCAGCATCAGCGGCAGCAGCAACAATTTGACCTTT TGGTCAAAAAGCATAAAACTAAAATAATTATTACTACCTATATAT Found at i:16763734 original size:7 final size:7 Alignment explanation
Indices: 16763718--16763734 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 16763708 TTCGAATCGA * 16763718 ATTTTCG 1 ATTGTCG 16763725 ATTGTCG 1 ATTGTCG 16763732 ATT 1 ATT 16763735 TAGTGTGGAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.18, C:0.12, G:0.18, T:0.53 Consensus pattern (7 bp): ATTGTCG Left flanking sequence: Indices 16763218 -- 16763717 TTGGAATAAAAGACTTTCATCGTTCTAAATTTCGACTACTTAAAAAATTCTAAAGCAAATAGATC ATTTAAATGTCAGAAAGAGACAGCCAGCTGTTACTTCATCAAATGAAAAATTCGTGTTTCGATGT GAGTTCGAAATGCTGTAATAGCCATTTCGAATTACTGGCGAAATGATTTCATACACAAATACCTG TGTGGCCGAGACATATGCGTATGCATACTATAGAAAATAGATTTAGAATACTCGAATTCGTTGTC GGCTCATATACATGGGCGAAATAATTTCGAATATGTTTTAAAAATAACCAAAGACATTAGAAAGA GATCGCCAATACTTATACATTATGTCTATGTGTGCCATGTGGTAGCATGAGCCAAAAAGCTTCTC GAAATTACGAATTACATATAGACGAATATGTATGTGACTTTAGTTTCGAAATAATTTCGAGAATT TTAAAAATAACGCATTCGTTAAAAGTTCGCGTCAATTCGAATCGA Right flanking sequence: Indices 16763735 -- 16764234 TAGTGTGGATTGTCGAAAATCGTTCCGCCTTCGAAGTTTACTGAAAGGAATCATTGCGATCTCGT GAATTGCTTGTATGAGAACACGCCACCATATCGAGATACCTGTTCAAAATATCGAAATCGCGTTC CAAACGGTAGTAGTTACCAGTTGAGTGAGTTGTGGTGACAGTTTAACCTCTCTACATTTGTAATA ATAAGCATTGTTTTGGCGTATCAATAGTCTGTAGATTTTTTCACAAAGAAACCTGGAGAAATGTA CACAAATATCTAAATGAAAATTGGCGTTACGTAACAAATACCAACGCCCCGAAAATCCGTATATA TGCAAAGCATTCTGATATATATATATATAAGTGGTATACATATACATATTCGTATCGGATCCGTG ATCTATATTTAGGCGACAACCCACACAATTCACTTGTTGTCTGTTTATAACAAAAACAACAACAC AAGCACCGACCAGGCCTAATTAACTTTGAGGTGTGAGATAAAATC Found at i:16764588 original size:8 final size:8 Alignment explanation
Indices: 16764577--16764593 Score: 27 Period size: 8 Copynumber: 2.1 Consensus size: 8 16764567 TTATTTTTCG * 16764577 AGTTTTTA 1 AGTTTCTA 16764585 AGTTTCTA 1 AGTTTCTA 16764593 A 1 A 16764594 ACGAAATTTA Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.29, C:0.06, G:0.12, T:0.53 Consensus pattern (8 bp): AGTTTCTA Left flanking sequence: Indices 16764077 -- 16764576 TATATATATATAAGTGGTATACATATACATATTCGTATCGGATCCGTGATCTATATTTAGGCGAC AACCCACACAATTCACTTGTTGTCTGTTTATAACAAAAACAACAACACAAGCACCGACCAGGCCT AATTAACTTTGAGGTGTGAGATAAAATCAAAGCCACACATAAATAAATATCCGGTTACGGTAACG GGAATTTCGAAAGCGCGAAACGGGAAAAATGTTCATATTTGGAAATCGAAATTAAATTTCGAAAT CCTATCCACGCACACACGCGTAGAACTGTTATAGTGTCCGCTATTGCTGCTGCTGTCAAAATGGG TCAAAAGCATAAAATCCATAAAAGAATCAGACTTCGAAACAAAATTCCAAAAATAGTATGCTTTT CTGAGAACCATATAATAAATATTATTTTTCTTTTGTATATTTACAGGGAAGTTTTGGGCTCACGA CGCGATTAACAAAGAAATTTTGAAAAGTCCCAATATTATTTTTCG Right flanking sequence: Indices 16764594 -- 16765093 ACGAAATTTAAGCAAGATGCCGAAGCCAGTCGCAAATCAGGAGGATGAGGATCCCACCCCATACC TGTTCGTGTCTTTGGAGCAAAGGCGTATCGATCAATCGAAACCCTATGACTCGAAGAAGTCTTGC TGGATCCCCGACGAGAAGGAGGGTTATCTCCTTGGTGAGATCAAGGCCACCAAGGGCGATATCGT CTCCGTTGGTCTGCAGGGTGGAGAGGTAAAGTCATCGTCTACACGAGGCTTCAGCATAAAAAAAA AAAAAAAAAAGCTATTGAAGAGTCTTATGGTCGACCTAAAGTGTTAGTCAATTGTTACCCAATGG GAAAATCTTCTTGGTACTACTACTACTACTACAAGAAGGGTTTTTCAATGGATAGCATAAGACTG GGACTTTGTCATGACCTCATACACTTCAATAGCTTATAATGTAGCCACAAAATTAGAATGAAACT ATAGATTTCGCCTACATATACGATTAGGTACGAGATATCAAATCC Found at i:16765916 original size:9 final size:9 Alignment explanation
Indices: 16765902--16765924 Score: 39 Period size: 9 Copynumber: 2.6 Consensus size: 9 16765892 AAACGGTTCT * 16765902 ACACACAGC 1 ACACACACC 16765911 ACACACACC 1 ACACACACC 16765920 ACACA 1 ACACA 16765925 ATCAAAGCCA Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 9 13 1.00 ACGTcount: A:0.48, C:0.48, G:0.04, T:0.00 Consensus pattern (9 bp): ACACACACC Left flanking sequence: Indices 16765402 -- 16765901 GAAAGATCTGCTCCAGCAAGTGAACCCCCCGAAATACGAAAAAGCCGAGGATATGTCCAACTTGA CATACCTTAACGATGCCTCTGTGCTCCATAACTTGAGACAGAGATACTACAACAAGCTGATCTAC GTAAGTAATTGCCGATCAAGGGTGGCACACAAGTATGCGTTCTATGTTCTTACCCAACCGCTTAT CTACCGCCAATCACTCACACTTATGAAAAAAAGAAAAACATCCCAAAATTTTTCAAAATTCGATT AGAGCTGCAACTAGTCTCCGAAGCTTTGAAGTATTTAACGCAATTGAGTAGACTGCTAACCTTAG TCATTCGCTCCTTTTTCGGACTTATGAAACTCATTTTATTAAGCCCTATGAAAAAAAAAACATAA CCCCAGCTAATTCCTCATTTCCTGTGACGTATGCACTAATCCAGCTTGTATTAAAACGAATCTTG GCCGTCCAGTCGGATGAACCGCACAACTGGAAAGAAAACGGTTCT Right flanking sequence: Indices 16765925 -- 16766424 ATCAAAGCCACAAGAATTGGTTCTCAACGCACAATGAAAGTCGAGCTGAAAACCCCCAAGCAGAC CATCAATCATTACCCCAATCCAACCAGAAAAAAACTTTAAACAAGTATCCTGAAACATCGTAGTT AGTTTTTTTTTTTAAATTACTTATAACACAAAACCGAACACCAAAAAACTGGTAGACCAAAAGAC AACCGAAACTGTTACTAAAAATCGTAATTATAAGAAAAACTTATTTGAAACTTTCCTCTGTCTAT GGAGCGATTACGAGCACTCGGAAAACTGAAAACTTAAAACCGAAACAGTTGCTAAAAACTACAAA AGACAACTGGAGTGGCTCTGAATCGCCCGATACAAAAACTAACTTTCCAACGATTCTAACATATA TGAATTTATGCAAAGATCTTCACGATATTAACAAGCAACTTCTCTCCCATCTTTCTTGGCCAAAA AAACAGACCTACTCCGGTCTTTTCTGCGTTGCCATCAATCCTTAC Found at i:16766217 original size:7 final size:7 Alignment explanation
Indices: 16766205--16766229 Score: 36 Period size: 7 Copynumber: 3.6 Consensus size: 7 16766195 CGAGCACTCG 16766205 GAAAACT 1 GAAAACT 16766212 GAAAACT 1 GAAAACT * * 16766219 TAAAACC 1 GAAAACT 16766226 GAAA 1 GAAA 16766230 CAGTTGCTAA Statistics Matches: 15, Mismatches: 3, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 7 15 1.00 ACGTcount: A:0.60, C:0.16, G:0.12, T:0.12 Consensus pattern (7 bp): GAAAACT Left flanking sequence: Indices 16765705 -- 16766204 TTGAGTAGACTGCTAACCTTAGTCATTCGCTCCTTTTTCGGACTTATGAAACTCATTTTATTAAG CCCTATGAAAAAAAAAACATAACCCCAGCTAATTCCTCATTTCCTGTGACGTATGCACTAATCCA GCTTGTATTAAAACGAATCTTGGCCGTCCAGTCGGATGAACCGCACAACTGGAAAGAAAACGGTT CTACACACAGCACACACACCACACAATCAAAGCCACAAGAATTGGTTCTCAACGCACAATGAAAG TCGAGCTGAAAACCCCCAAGCAGACCATCAATCATTACCCCAATCCAACCAGAAAAAAACTTTAA ACAAGTATCCTGAAACATCGTAGTTAGTTTTTTTTTTTAAATTACTTATAACACAAAACCGAACA CCAAAAAACTGGTAGACCAAAAGACAACCGAAACTGTTACTAAAAATCGTAATTATAAGAAAAAC TTATTTGAAACTTTCCTCTGTCTATGGAGCGATTACGAGCACTCG Right flanking sequence: Indices 16766230 -- 16766729 CAGTTGCTAAAAACTACAAAAGACAACTGGAGTGGCTCTGAATCGCCCGATACAAAAACTAACTT TCCAACGATTCTAACATATATGAATTTATGCAAAGATCTTCACGATATTAACAAGCAACTTCTCT CCCATCTTTCTTGGCCAAAAAAACAGACCTACTCCGGTCTTTTCTGCGTTGCCATCAATCCTTAC AAGCGTTACCCCGTGTATACCAACCGTTGCGCTAAGATGTACCGTGGCAAGCGCCGTAATGAGGT GCCACCCCATATTTTCGCCATCTCTGACGGTGCCTACGTCGACATGTTGACCAACCACGTGAATC AATCTATGTTGATCACCGGTGAGTCTGGTGCCGGAAAGACTGAGAACACCAAGAAGGTCATTGCG TACTTCGCCACTGTTGGTGCCTCCAAGAAGACCGATGAGGCCGCCAAGAGCAAGGGCTCCCTGGA AGATCAGGTTGTGCAGACCAACCCTGTGCTTGAGGCCTTCGGTAA Found at i:16767197 original size:7 final size:7 Alignment explanation
Indices: 16767185--16767198 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 16767175 CACACACACG 16767185 AACACAA 1 AACACAA 16767192 AACACAA 1 AACACAA 16767199 CCCACACAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.71, C:0.29, G:0.00, T:0.00 Consensus pattern (7 bp): AACACAA Left flanking sequence: Indices 16766685 -- 16767184 AGATCAGGTTGTGCAGACCAACCCTGTGCTTGAGGCCTTCGGTAACGCCAAGACCGTGCGTAACG ATAACTCCTCTCGTTTCGTAAGTAGTCCCGCACTCGATAGATCACCATGTTGGAACTGAACTAAT TTGAACTTATCCCCTTGCAAACCAGGGTAAATTCATCCGTATCCACTTCGGACCCACTGGTAAAC TGGCTGGTGCTGATATTGAGACCTGTAAGTTGTCACTTTAATACGTTGTGAATATTGATCCGGAT CCTAATGTCATACTCTTACCATTACAGATCTGCTGGAGAAGGCTCGTGTCATCTCCCAGCAGTCC CTGGAGCGTTCCTACCACATCTTCTACCAGATCATGTCTGGCTCCGTTCCCGGTGTTAAAGGTAT ACAATCGTCTCACTTACTCATCCATACATCCTTCATTCAGAGAATCATCGAACTATCTAGTTCTT TTTAAATCTCTTTTAGTTGTGGTTTAGGTTCAAGACACACACACG Right flanking sequence: Indices 16767199 -- 16767698 CCCACACAAACCCATTCAAAATTGATTTCATAGATTAATCGATGTACTTTCTATATACACACTAT CTGTCTAGACATTTGTCTGTTGACCGATAACATCTACGATTACCACATTGTCTCCCAGGGCAAGG TCACTGTAGCCAGTATCGATGATGCTGAGGAGTTCTCCCTCACCGATGTAATTGCCCTCTCCTTA TTTGATTCTAAATTTCGTTTTTATATTGTTGATTGACACTTAGATACTTATAATTTATTTGGCTA AACTACTACTATTTGATCTATCGTAATCTATTTTAGAGCAATTTATAGCTAGTTGGTTAACTATT GCGTACCGCTATCGTATCGTAAATGGATTAGGCCACTCCCCTATATCCGCTTAGCTGTAGCCCAA TACTATGCCATGAAACATCCCAAGGAACGGATATTTGGATACTCATAGTAGAAAGCTTTCACTGA GACCCCCAGCCCTCCCCCCACCCAACACCAAAGTAGTACTAACCC Found at i:16767218 original size:10 final size:10 Alignment explanation
Indices: 16767193--16767212 Score: 33 Period size: 10 Copynumber: 2.1 Consensus size: 10 16767183 CGAACACAAA 16767193 ACAC-AACCC 1 ACACAAACCC 16767202 ACACAAACCC 1 ACACAAACCC 16767212 A 1 A 16767213 TTCAAAATTG Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 9 4 0.40 10 6 0.60 ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00 Consensus pattern (10 bp): ACACAAACCC Left flanking sequence: Indices 16766693 -- 16767192 TTGTGCAGACCAACCCTGTGCTTGAGGCCTTCGGTAACGCCAAGACCGTGCGTAACGATAACTCC TCTCGTTTCGTAAGTAGTCCCGCACTCGATAGATCACCATGTTGGAACTGAACTAATTTGAACTT ATCCCCTTGCAAACCAGGGTAAATTCATCCGTATCCACTTCGGACCCACTGGTAAACTGGCTGGT GCTGATATTGAGACCTGTAAGTTGTCACTTTAATACGTTGTGAATATTGATCCGGATCCTAATGT CATACTCTTACCATTACAGATCTGCTGGAGAAGGCTCGTGTCATCTCCCAGCAGTCCCTGGAGCG TTCCTACCACATCTTCTACCAGATCATGTCTGGCTCCGTTCCCGGTGTTAAAGGTATACAATCGT CTCACTTACTCATCCATACATCCTTCATTCAGAGAATCATCGAACTATCTAGTTCTTTTTAAATC TCTTTTAGTTGTGGTTTAGGTTCAAGACACACACACGAACACAAA Right flanking sequence: Indices 16767213 -- 16767712 TTCAAAATTGATTTCATAGATTAATCGATGTACTTTCTATATACACACTATCTGTCTAGACATTT GTCTGTTGACCGATAACATCTACGATTACCACATTGTCTCCCAGGGCAAGGTCACTGTAGCCAGT ATCGATGATGCTGAGGAGTTCTCCCTCACCGATGTAATTGCCCTCTCCTTATTTGATTCTAAATT TCGTTTTTATATTGTTGATTGACACTTAGATACTTATAATTTATTTGGCTAAACTACTACTATTT GATCTATCGTAATCTATTTTAGAGCAATTTATAGCTAGTTGGTTAACTATTGCGTACCGCTATCG TATCGTAAATGGATTAGGCCACTCCCCTATATCCGCTTAGCTGTAGCCCAATACTATGCCATGAA ACATCCCAAGGAACGGATATTTGGATACTCATAGTAGAAAGCTTTCACTGAGACCCCCAGCCCTC CCCCCACCCAACACCAAAGTAGTACTAACCCATTTCATATCCAAC Found at i:16771556 original size:9 final size:9 Alignment explanation
Indices: 16771539--16771557 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 16771529 CAAGCACTGG 16771539 TTTTAAATA 1 TTTTAAATA * 16771548 TTTTGAATA 1 TTTTAAATA 16771557 T 1 T 16771558 ATACTCATCC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58 Consensus pattern (9 bp): TTTTAAATA Left flanking sequence: Indices 16771039 -- 16771538 AACGCCCACCAAACAACACAAAGATACACTGCAGCACTATCCGTAGAGTTACCTTGATAGATCAC TATTATAAATTGTAAATATTCCCAACTCCAATGTAGTACAACGGCTTCGAGCAATTGTGTATTAA CTTCACCAATGAGAAACTGCAGCAGTTCTTTAACCATATCATGTTCGTCATGGAGCAAGAGGAAT ACAAGAAGGAGGGTATTAACTGGGACTTTATCGATTTCGGTATGGACTTGCTGGCCTGTATCGAT CTGATTGAAAAGGTGCTTAATAGATTCAAATTACTCCATGTTTTCTCTTTGCGTACTTTGAATTG TGTGCACATGAAAAATGCACTGAATTATTTTCGTTTGTTATGTCATGTCTTAGCACTTTCAATGT GAATCGAAATCTGCGGATGGGTTTCCGCCACAGTGATCTCAGGTAATCTGTAAAATGAGTGTGTT CTGAATGTCAGGGAATTTTGTTGGCATGCCCCATCCAAGCACTGG Right flanking sequence: Indices 16771558 -- 16772057 ATACTCATCCCATCAATCCGCACCATTTCCCCCTAAAAAAAATATGATATCTAGTACAACGGTTT CGAGCAACTGTGTATTAACTTCACCAACGAGAAGTTGCAACAATTCTTCAACCATCACATGTTCG TTTTGGAGCAAGAAGAATACAAGAGGGAAGGCATTGACTGGGCCTTCATCGATTTCGGTATGGAC TTGTTGGCCTGTATCGATCTGATTGAAAAGGTTCGTCTCCTCCCAACCAACCTTCCTAGCCAAAA ATTATCCGCCATCGCTCGTTGTTCTGTCAACATATATGAATAAGTTTATTTATAAAGTTTTCGGC ACCCTGAATGGCAAATCATCTAAAACTGATGATCCCAGTTGGGGGTAGCGTATATATACAATATT TATTGTTTCAGTCATGCGGAGAAGTGCGCCCATAAGCGTTTTCTAGCTCCATTATATATATATAT ATATACTATAAGCACACAAACCCACATCCATGTCATGCCTCTCCA Found at i:16773811 original size:7 final size:7 Alignment explanation
Indices: 16773799--16773812 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 16773789 TCCTCGTTGT 16773799 ATGTACC 1 ATGTACC 16773806 ATGTACC 1 ATGTACC 16773813 GTACCAGAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29 Consensus pattern (7 bp): ATGTACC Left flanking sequence: Indices 16773299 -- 16773798 TGCTTGAAGGTATCCGTATTTGCCGTAAGGGCTTCCCCAACAGGATGATGTACCCTGACTTCAAG ATGCGGTAAGTATCGGTTGCAATGGGTTCTTAGGTATTATATACAACATAATTAATACACTAGCA CTTAGACACTTAGTTCAAGTTCAGTTAGAGTACAGCACTTTCGGTCACTTGTACATGCACCAGTT AGATTTATGAGTAATCTATTTATTATGATCGATTATTAACGTGTGAATTGTAATACTCAACTATA GTTACATGATTCTGGCTCCTGCCATCATGGCGGCCGAAAAGGTGGCCAAGAATGCTGCCGGAAAG TGCTTGGAAGCCGTCGGACTGGATCCCGATATGTACCGCATTGGTCACACCAAGGCACGCACGCA AAAAAATTTTCCTTTTTATATCCACCTTGTGTATGCAAGCGAATGTACTCACTCCAATTGTATGA CTAGTGTATCTTTCAATTGAATCCCCACACGTTGATCCTCGTTGT Right flanking sequence: Indices 16773813 -- 16774312 GTACCAGAAATCAATTCCAGTTTCAGTGCTGTGTTTAGGTGTATCTCCGTCTTAAGGCTTACTGT GTGTATCACGATTTTTTCTGAGTATGGAATCAAAAACGAACTCTACATCCTGACAGGTACCAGAT CCTGAACCCCCGTGGCATTAAGGACCTCGATTGTCCCAAGAAAGCCTCCAAGGTTCTGATTGAGT CCACCGAGCTGAACGAAGACCTTTACCGTCTGGGTCACACCAAGGCATGAGAAAGATATTTATTT AACTAAGCTTAATCTGGCACAAGAACTTCAAAATTTTTGCAAAAGCAGACACTTATGAGTGGATG GCTCAATAGAATTTTTATGTAGTCAATAATATTTGATACGGTGCTCAAGAAAACCTCAACGGGAG AGCTCCCCAATACAATATACCCATATATACATTCACACTTTACACACAGAAACCAGGTTGATAAG TCAAAAAATGTTCCGGGTGGGAACGATGGTATAAATATTTCCATA Found at i:16775054 original size:9 final size:9 Alignment explanation
Indices: 16775040--16775057 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 16775030 TCCTGAACCC 16775040 CAAGGGTAT 1 CAAGGGTAT 16775049 CAAGGGTAT 1 CAAGGGTAT 16775058 TGAGGATCCC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.33, C:0.11, G:0.33, T:0.22 Consensus pattern (9 bp): CAAGGGTAT Left flanking sequence: Indices 16774540 -- 16775039 CACTTGACGAATACCACACAGCTCGTATTCGAATCCAATTCTTTCAATACAAAACAATTGAACTT CACTCGTATCTCAAATGCCAGTCAGAGGCGATACGAGTCAAAAGCATCCACAAATGAAATACAAA ACCAATACAGCATCCAACAGATTTTAGGCGCCCTTTAGGTAAACAGCAACATAACTCTACTAAGG GCGCTCAGTTCAGCACTTCTCTCCCCAATCCCGGAAATGATATGATATGAAATCCCACTCCAACA CGCACACACACATGTAGACACGAACACCTAAACACTCTTAAAACCCCAAAGCATGGGTTCGAAAG TATTATTGTAGAAGTTCCTTTTTGAAAGACTTTCTTGTTAAGATCAACTGTAACTAACACTAAGG TATAAGCTAGAAGTACTAAACCATAAATCGATACTTAGAATACTGTAGTATCATTTAATGTTGAT TATCATCATCTATATGTGACCATATAGCTACCAAATCCTGAACCC Right flanking sequence: Indices 16775058 -- 16775557 TGAGGATCCCAAGAAATGCACGAAGGTTCTGATCGAGTCGACCGAACTGAACGATGATCAGTACC GTTTGGGTAACACAAAGGCACGCACAATCAAACATTCTATATACACTTGATTACTTCAAAAACTC CTTTTGTCAATGTCTCCAAAACTGATGTCCAGACATACATTTACACTTTGCATCAACAAACTGAA AACATCCATGGAGTCGGACCATGTCGAGATGGAAACTAAGCAAAAAGCTTAGACTCTTGACCGGG GACACTCTGTTCGCATGTCTTTTTTCTCTATCTCTCTGTCTGTATAAGTTAATAGAAGGACACAC ACACATACATCAATCCAGATCCTTCCCAAACACCCAAAAATCCTTCCCAAAAGATAATCCCAACC CCACAACCACCAAACCCAAAAGTTCATTGGTGTATCCGTATTAGTAGTAACTTACCTAGACGTAA CTCTACTATTTCCTAGTCATTAGTTGATTAATCTAACCCCACCAA Found at i:16775978 original size:8 final size:8 Alignment explanation
Indices: 16775952--16775978 Score: 29 Period size: 8 Copynumber: 3.2 Consensus size: 8 16775942 TATCAAGACT 16775952 CACTT-CA 1 CACTTGCA 16775959 CACTTCTGCA 1 CAC-T-TGCA 16775969 CACTTGCA 1 CACTTGCA 16775977 CA 1 CA 16775979 AGATATATAA Statistics Matches: 17, Mismatches: 0, Indels: 5 0.77 0.00 0.23 Matches are distributed among these distances: 7 3 0.18 8 7 0.41 9 2 0.12 10 5 0.29 ACGTcount: A:0.26, C:0.41, G:0.07, T:0.26 Consensus pattern (8 bp): CACTTGCA Left flanking sequence: Indices 16775452 -- 16775951 AACCACCAAACCCAAAAGTTCATTGGTGTATCCGTATTAGTAGTAACTTACCTAGACGTAACTCT ACTATTTCCTAGTCATTAGTTGATTAATCTAACCCCACCAAAACCAATACAAAATTAGTTAGTAT GTATGCCATCTTACACTAACCAAATCGTTTGAAACTAATTAATACAATACCTTCAAACTACAAAC CCCCATACAGCTACAAGATCATGTGCCCCAAGCTATTGCAGGGCGTTGAGAAAGACAAAAAGGCC ACTGAAATTATCATTAAGTTTATCGATTTGCCCGAAGATCAGTACCGTTTGGGTAACACAAAGGT ATATGACTGACAATATATCTTAAACATTCATTCACAAACTACATCATCTGCACTCTATTGTTTGA ATCTGGACAATGTTTCCCAGTCCGCTTAACTTGACTCAAGCACCATCGAATTTCACAATTCGTCA GGGTTTGATTGAGGTTTAGGCCAATCGGTAGATATTATCAAGACT Right flanking sequence: Indices 16775979 -- 16776478 AGATATATAACTTCCGGTTCTGCCATTCCTAGCCCAATCATGACTTTTCCAGCTGCTAGTACACA GCTTTAGTCAATGATTTGGCAAGGGATTGTTTGATCTGGACTTCTATATTGACTTTCTTGGTCTC ATCTGAGTGTTTTCATCTGCCTGTATTCTAATCCCATTTGCATCCGTATACTAAATAAATATATG TTTTGTTTGTATGTGTGAGTTTATGTACCTTTCTGTTCTGTTCTTGTTTGTACCATCCATCCCTC TATCTATCCCAGTTCAACCTGTCCAAAAGTGTTTTTGAAGAACCGCTTAAGCATAAGCAAAAAAA GAAAAAATGAAAAAATGAATGAACCTACGCCGTCTGAATGAGTTTCCCCAGAAGCTCCCAGAACA GTGTTGGTTCCGCTTAGTGCACGCGCTCTTCAGTAGATGGAACCAACAGAAATCTAACCTATTTT CTTTCCCCCCACCCAATCCAAAATCTGAATACGGAAAAAAAACAG Found at i:16776310 original size:8 final size:8 Alignment explanation
Indices: 16776297--16776322 Score: 45 Period size: 8 Copynumber: 3.2 Consensus size: 8 16776287 AAGCATAAGC * 16776297 AAAAAAAG 1 AAAAAATG 16776305 AAAAAATG 1 AAAAAATG 16776313 AAAAAATG 1 AAAAAATG 16776321 AA 1 AA 16776323 TGAACCTACG Statistics Matches: 17, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 8 17 1.00 ACGTcount: A:0.81, C:0.00, G:0.12, T:0.08 Consensus pattern (8 bp): AAAAAATG Left flanking sequence: Indices 16775797 -- 16776296 TAAACATTCATTCACAAACTACATCATCTGCACTCTATTGTTTGAATCTGGACAATGTTTCCCAG TCCGCTTAACTTGACTCAAGCACCATCGAATTTCACAATTCGTCAGGGTTTGATTGAGGTTTAGG CCAATCGGTAGATATTATCAAGACTCACTTCACACTTCTGCACACTTGCACAAGATATATAACTT CCGGTTCTGCCATTCCTAGCCCAATCATGACTTTTCCAGCTGCTAGTACACAGCTTTAGTCAATG ATTTGGCAAGGGATTGTTTGATCTGGACTTCTATATTGACTTTCTTGGTCTCATCTGAGTGTTTT CATCTGCCTGTATTCTAATCCCATTTGCATCCGTATACTAAATAAATATATGTTTTGTTTGTATG TGTGAGTTTATGTACCTTTCTGTTCTGTTCTTGTTTGTACCATCCATCCCTCTATCTATCCCAGT TCAACCTGTCCAAAAGTGTTTTTGAAGAACCGCTTAAGCATAAGC Right flanking sequence: Indices 16776323 -- 16776822 TGAACCTACGCCGTCTGAATGAGTTTCCCCAGAAGCTCCCAGAACAGTGTTGGTTCCGCTTAGTG CACGCGCTCTTCAGTAGATGGAACCAACAGAAATCTAACCTATTTTCTTTCCCCCCACCCAATCC AAAATCTGAATACGGAAAAAAAACAGGTGTTCTTCCGCGCCGGTGTCCTGGGTCAGATGGAGGAG TTCCGTGATGAGCGTCTGGGCAAGATCATGTCCTGGATGCAGGCATGGGCCCGTGGTTACCTGTC CCGTAAGGGCTTCAAGAAGCTCCAGGAACAGCGCGTCGCCCTCAAGGTTGTCCAGCGCAATCTGC GCAAGTACCTGCAGCTCCGTACCTGGCCCTGGTACAAACTGTGGCAGAAGGTCAAGCCCCTCCTC AACGTCAGCCGCATCGAGGATGAGATTGCCGTGAGTATTCCCCCAGAACGAATGAGAACGAGACC AGCCTGGGTCTGGGGACTTAGTGGTCTTTGGTGATTCGATGCGGA Found at i:16777622 original size:8 final size:8 Alignment explanation
Indices: 16777605--16777625 Score: 35 Period size: 8 Copynumber: 2.6 Consensus size: 8 16777595 CCATACCGAC 16777605 GCAATATA 1 GCAATATA * 16777613 GCATTATA 1 GCAATATA 16777621 GCAAT 1 GCAAT 16777626 GCCAGCAATT Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29 Consensus pattern (8 bp): GCAATATA Left flanking sequence: Indices 16777105 -- 16777604 TGCCCAAACATATCGATACGATCTGATTCCAATCGCTGGGCTAGCCAAAAATAGACGCTGTCATA ATCTTTTCGCACTTTCGGGCCAAATGTGGCCTCTATGTGTGTGCCCCAGGCGAATCATTTCGCTG GAATCCAACAACTCTTCACCTCTCACATTTTCATACACCCAAACCCTCCCCCCCATACGTACAAT GTACATATGTATTTAGGTATGAATATTTTTCGAAAGTTATGACTTATAGTCTTGGGATCTATTCT TGGCACTGCCATATAGCTGGGGATTTTTTAAAGAGCCACAATTAGTTTGCCAATTAGCTTGCTAA TTAAATAATAAAAAATGCCCGAGGATGCCCACGTATAGTTCCGATCCCCGATGAGTAATTTACCA TGCATATGTACATCCATACGCACGATATTTCTAACCGATCTATATATACCTAAGATGGTACACCT GCTGGTCCCGCCGCACAAGTGCGACTTGATAGGCCCCATACCGAC Right flanking sequence: Indices 16777626 -- 16778125 GCCAGCAATTCGTGAATTATGATGGCTACCTCCTAACCAAGGCGATTACACACATGCCAAGTGGC AGCAGCTGCCATTTCGCTGCTCTGCTCTGCTCTGCTCTGGTGCCGTTCTGCTCGCATCGGGGCGT TTTTGCTAATTTTATAGCCAAAGTGGCCCAGTGCATTTGCAGCAGCCATTCCAGTTGTATTTGAC CAGTCGCCGTCGCGGTAACGCGTACCACAAAAAATCGAACCCCTAACGAAGAACCAATCGATCTG AGCAAAAGAGCCACATTGGGCCACAGAGCATCTTGACTGGCATCAAGATAACGAATTCAAATTGA AATTGTATTGTAGTTGACAATTGTGAAAAGCCCCTTTTCCGAGAGAGTTTCACATTTAATTAGGA GTTATTGAAAGTGATTTATCATCAATATGGCCGATGAAAAGAAAGCCAAGAAAACGAAAAAGTCC ACCGAATCGACCACACCCAGTGCCACTGAGGAAGCAGCTCCAGCC Found at i:16780081 original size:7 final size:7 Alignment explanation
Indices: 16780068--16780085 Score: 29 Period size: 7 Copynumber: 2.6 Consensus size: 7 16780058 GAAAGCAATT 16780068 CTCTCGC 1 CTCTCGC * 16780075 TTCTCGC 1 CTCTCGC 16780082 CTCT 1 CTCT 16780086 GTATTTGTCT Statistics Matches: 9, Mismatches: 2, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.00, C:0.50, G:0.11, T:0.39 Consensus pattern (7 bp): CTCTCGC Left flanking sequence: Indices 16779568 -- 16780067 CAGCTCAACAAGCTGAAGGCTAAGTAAGTATTGCGAATATTATTAGACTTCTGGCTAGCTTTTTC AGGTGCCAACGCTATCGAGATAGAGAGATCTTGAAGGATCTACAGTTTACAGTCTTCTTTCGAAG AGCTTTGGTTGCCGAACCCAACATAATAGATATTTTGCTCTTTTTTACCCATTTGCTAATCCAGG GCTGAACACGATCGCCAGACTTGCCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGCT GGGTCGCGATAAGGTAATATGTCGTGATAACTGGCGCCCGAGCAGGGACGTCCAGCGATTCATAC ATATACAGATCCATACACTGAACACAGCATGTTCCAACCAACAAATAAAAAAAAAATGCTACCAC ACAACTACGTACAAACGAACTACGTCTGTGTGTCCCTCTATCTCTCTCTCTCTCTGTCTAATGAA ATTGAAGGTTATTTGGAAAAAAGGTTCAACGCAAGGAAAGCAATT Right flanking sequence: Indices 16780086 -- 16780585 GTATTTGTCTCTGTCTCTGTCTTTATCCCCCACAAAACATGAACTAACCCGTGAAATACGAACCT CTGTGTCTCTATCTATCTGTCTAAACCAGGGCTGAGAAGGAGAAGAACGAGTACTACGGCCAGTT GAACGATCTGCGCGCCGGTGTCGACCACATTACCAACGAGAAGGTATTGAATTTGATCTCTACAC ATATTATTGCTCTCATCGCGATGCTGTAAATTTATATGCTGAAAGTTCTAGTTTAGCCACGTCTA CTACATCTGTGTATAGTATCAACGTAGTTGCAACGCAACCACACCGAAACTCCAAAAGAAAATTT GATTATGTAAAAACTAAAACGACCCACCACCACTAAAGTAATATCCAAGCTTGATCTACTAAACC CCAAATGCCTTGTACAGCCACTTGACACGAAACCAAAATGCCACACTTACAATCAATTATGAATG TTCCCAATCCCCATCGTGAAACTAATGAACATCCATTGCTTAAAT Found at i:16780173 original size:8 final size:8 Alignment explanation
Indices: 16780150--16780173 Score: 27 Period size: 8 Copynumber: 3.0 Consensus size: 8 16780140 AATACGAACC * * 16780150 TCTGTGTC 1 TCTGTCTA * 16780158 TCTATCTA 1 TCTGTCTA 16780166 TCTGTCTA 1 TCTGTCTA 16780174 AACCAGGGCT Statistics Matches: 12, Mismatches: 4, Indels: 0 0.75 0.25 0.00 Matches are distributed among these distances: 8 12 1.00 ACGTcount: A:0.12, C:0.25, G:0.12, T:0.50 Consensus pattern (8 bp): TCTGTCTA Left flanking sequence: Indices 16779650 -- 16780149 AGATAGAGAGATCTTGAAGGATCTACAGTTTACAGTCTTCTTTCGAAGAGCTTTGGTTGCCGAAC CCAACATAATAGATATTTTGCTCTTTTTTACCCATTTGCTAATCCAGGGCTGAACACGATCGCCA GACTTGCCACAACGAGCTGAATCAGACTCGTACCGCCTGCGATCAGCTGGGTCGCGATAAGGTAA TATGTCGTGATAACTGGCGCCCGAGCAGGGACGTCCAGCGATTCATACATATACAGATCCATACA CTGAACACAGCATGTTCCAACCAACAAATAAAAAAAAAATGCTACCACACAACTACGTACAAACG AACTACGTCTGTGTGTCCCTCTATCTCTCTCTCTCTCTGTCTAATGAAATTGAAGGTTATTTGGA AAAAAGGTTCAACGCAAGGAAAGCAATTCTCTCGCTTCTCGCCTCTGTATTTGTCTCTGTCTCTG TCTTTATCCCCCACAAAACATGAACTAACCCGTGAAATACGAACC Right flanking sequence: Indices 16780174 -- 16780673 AACCAGGGCTGAGAAGGAGAAGAACGAGTACTACGGCCAGTTGAACGATCTGCGCGCCGGTGTCG ACCACATTACCAACGAGAAGGTATTGAATTTGATCTCTACACATATTATTGCTCTCATCGCGATG CTGTAAATTTATATGCTGAAAGTTCTAGTTTAGCCACGTCTACTACATCTGTGTATAGTATCAAC GTAGTTGCAACGCAACCACACCGAAACTCCAAAAGAAAATTTGATTATGTAAAAACTAAAACGAC CCACCACCACTAAAGTAATATCCAAGCTTGATCTACTAAACCCCAAATGCCTTGTACAGCCACTT GACACGAAACCAAAATGCCACACTTACAATCAATTATGAATGTTCCCAATCCCCATCGTGAAACT AATGAACATCCATTGCTTAAATCACTAATAGGCTGCCCAGGAGAAGATCGCCAAGCAGCTGCAGC ACACCCTCAACGAGGTGCAGTCGAAACTGGACGAGACCAACAGGA Found at i:16782683 original size:9 final size:9 Alignment explanation
Indices: 16782663--16782683 Score: 28 Period size: 9 Copynumber: 2.3 Consensus size: 9 16782653 CGAGGAGCGC * * 16782663 GCCGATCTG 1 GCCGAGCAG 16782672 GCCGAGCAG 1 GCCGAGCAG 16782681 GCC 1 GCC 16782684 ATCAGCAAAT Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.14, C:0.38, G:0.38, T:0.10 Consensus pattern (9 bp): GCCGAGCAG Left flanking sequence: Indices 16782163 -- 16782662 AACTCCTGAACGAAGCCAAGAACTCCGAGGAGAAGGCCAAGAAGGCTATGGTCGATGCCGCCCGC CTGGCCGATGAGCTCCGCGCTGAGCAGGATCATGCCCAGACCCAGGAGAAATTGAGGAAGGCCCT CGAGCAGCAGATCAAGGAGCTGCAGGTCCGTCTGGACGAGGCTGAGGCCAACGCCCTCAAGGGAG GCAAGAAGGCCATTCAGAAGCTTGAGCAGCGCGTCCGCGAGCTCGAGAACGAGCTGGATGGTGAG CAGAGGAGGCACGCCGATGCCCAGAAGAACCTGCGCAAGTCCGAGCGTCGCGTCAAGGAGCTGAG CTTCCAGTCCGAGGAGGACCGCAAGAACCACGAGCGCATGCAGGATCTGGTCGACAAGCTGCAAC AGAAGATCAAGACATACAAGAGGCAGATCGAGGAGGCTGAGGAAATCGCCGCCCTCAACTTGGCC AAATTCCGCAAGGCTCAGCAGGAGCTTGAGGAGGCCGAGGAGCGC Right flanking sequence: Indices 16782684 -- 16783183 ATCAGCAAATTCCGCGCCAAGGGACGTGCCGGTTCTGTCGGTCGTGGTGCCAGCCCAGCGGTAAG TTATTGAACAATGGCATCAAATGCCTTCATCATCACTACCCTTTAGCCCTTAAGACCCCACAATG ACCTTACCCACTCAGAGAAAAAAGTAAATATGAAAGCCCATTTGAACTTCTCTCAATCGAACACT TCTGAGCCTTCATTTTGCTGCATCAGCGCCATCTCCATTCACGTTATTTCTGGATCAGTTATTGA ATAATGTGTATATTCTTCCCTTTCATATTGCTCGCGTATGCTCTGCTTCCACTTACGAAAACAGA TCTAAGCCTGAGGCATCACCATCGAATAAAAAATCTATATAGCGATCCAATTATGGTTCATTTAC GATAATGAGAGAACAAAAACCATGCAAAGAGAATTATAGCTTATAAGAATTATTATAAAATAAAT ACTAATAACAATAATATAGATGCATCACATGACATTCGCTAGCAG Found at i:16784255 original size:7 final size:7 Alignment explanation
Indices: 16784243--16784257 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 16784233 ATCGATTAGC 16784243 ATACATA 1 ATACATA 16784250 ATACATA 1 ATACATA 16784257 A 1 A 16784258 GTGATCAGTA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.60, C:0.13, G:0.00, T:0.27 Consensus pattern (7 bp): ATACATA Left flanking sequence: Indices 16783743 -- 16784242 AGAGCATTTACGTACCTCAGTTACCGTTCTTTCACCGCGCCACTCGCTGGCACTACAAAACGTGT TCAGGGAGTGCTAGTCGTACTCGTTATCGTTCTATCCCGTGCAGTCGATCCAACATGGCGACTTG TCCCATCCCCGGCATGTTTAAATATACTAATTATTCTTGAACTAATTTTAATCAACCGATTTATC TCTCTTCCGCAGCCCCGTGCGACGTCCGTTAGGCCACAATTCGACGGATTGGCCTTCCCACCAAG ATTCGACCTTGCTCCTGAAAACGAATTCTAAATGCCATTTCATTTTTTAATTTATTTTAAATGAT ATTTCATAATGATTATGTTTATGATTTTAATTTAATTTCTTAATTTAAAAACAAAATAATAAAAC TATAACAAAATAAATATCGAAAACGACGGGAGGCAAACCACCAACAACGCCAGATGCACTTAGGC AAAAAAATAAAATCATATAACAACAATCGATCACCATCGATTAGC Right flanking sequence: Indices 16784258 -- 16784757 GTGATCAGTAACAGGCTATTGTGTAAGCGCGACATTTGCCATGGGGACACTGCTCGCTGGACCTG TATTTGTATTTGTATTTATATATTTTTATACAACTTTCGAAATGCATTCAACCAACTAACTATGA AAGAACCATCGACTCTCAACCGAACAACATGAGAATAATCGCGAAACGTGAGCCCCGTCAAAATG AAGGCCCCGCGGAGGTGTCCGCCGGTAAATGTCGCCCGCAGTTCGAATATTTTGCTCTATATGTA CTCCCAATATTGTTTGTCATGCAGACCAGACAAGACTTACGGACGACACGAGCTACACACTGCGC TTATGTTTATGTTTAACTCTGACTCTATCTAACAATGATAGGGAGATAAGATCATCACTTGACAC TAAATGAAAAGTATACAAAAAAGGAACAAAATAAATGTAAATCAATTTAACAAATGTGTATTATT TTCCGTGATCAAATCATTCGACTGGGACATATTCATTCATATTTA Found at i:16784352 original size:8 final size:8 Alignment explanation
Indices: 16784331--16784352 Score: 30 Period size: 8 Copynumber: 2.8 Consensus size: 8 16784321 TGTATTTGTA * 16784331 TTTGTATT 1 TTTATATT * 16784339 TATATATT 1 TTTATATT 16784347 TTTATA 1 TTTATA 16784353 CAACTTTCGA Statistics Matches: 11, Mismatches: 3, Indels: 0 0.79 0.21 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68 Consensus pattern (8 bp): TTTATATT Left flanking sequence: Indices 16783831 -- 16784330 TTATCGTTCTATCCCGTGCAGTCGATCCAACATGGCGACTTGTCCCATCCCCGGCATGTTTAAAT ATACTAATTATTCTTGAACTAATTTTAATCAACCGATTTATCTCTCTTCCGCAGCCCCGTGCGAC GTCCGTTAGGCCACAATTCGACGGATTGGCCTTCCCACCAAGATTCGACCTTGCTCCTGAAAACG AATTCTAAATGCCATTTCATTTTTTAATTTATTTTAAATGATATTTCATAATGATTATGTTTATG ATTTTAATTTAATTTCTTAATTTAAAAACAAAATAATAAAACTATAACAAAATAAATATCGAAAA CGACGGGAGGCAAACCACCAACAACGCCAGATGCACTTAGGCAAAAAAATAAAATCATATAACAA CAATCGATCACCATCGATTAGCATACATAATACATAAGTGATCAGTAACAGGCTATTGTGTAAGC GCGACATTTGCCATGGGGACACTGCTCGCTGGACCTGTATTTGTA Right flanking sequence: Indices 16784353 -- 16784852 CAACTTTCGAAATGCATTCAACCAACTAACTATGAAAGAACCATCGACTCTCAACCGAACAACAT GAGAATAATCGCGAAACGTGAGCCCCGTCAAAATGAAGGCCCCGCGGAGGTGTCCGCCGGTAAAT GTCGCCCGCAGTTCGAATATTTTGCTCTATATGTACTCCCAATATTGTTTGTCATGCAGACCAGA CAAGACTTACGGACGACACGAGCTACACACTGCGCTTATGTTTATGTTTAACTCTGACTCTATCT AACAATGATAGGGAGATAAGATCATCACTTGACACTAAATGAAAAGTATACAAAAAAGGAACAAA ATAAATGTAAATCAATTTAACAAATGTGTATTATTTTCCGTGATCAAATCATTCGACTGGGACAT ATTCATTCATATTTACTGGCCATACGTGTTAAGAAATTGTCACAGGTCTTTTGTAAACTAATAAG ATGTTGTGGATATATTTATTTACTTTTACTTAAGCCCCATACAAA Found at i:16784689 original size:10 final size:10 Alignment explanation
Indices: 16784676--16784697 Score: 30 Period size: 10 Copynumber: 2.2 Consensus size: 10 16784666 AAAAGGAACA 16784676 AAATAAATGT 1 AAATAAATGT * * 16784686 AAATCAATTT 1 AAATAAATGT 16784696 AA 1 AA 16784698 CAAATGTGTA Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.59, C:0.05, G:0.05, T:0.32 Consensus pattern (10 bp): AAATAAATGT Left flanking sequence: Indices 16784176 -- 16784675 ACAACGCCAGATGCACTTAGGCAAAAAAATAAAATCATATAACAACAATCGATCACCATCGATTA GCATACATAATACATAAGTGATCAGTAACAGGCTATTGTGTAAGCGCGACATTTGCCATGGGGAC ACTGCTCGCTGGACCTGTATTTGTATTTGTATTTATATATTTTTATACAACTTTCGAAATGCATT CAACCAACTAACTATGAAAGAACCATCGACTCTCAACCGAACAACATGAGAATAATCGCGAAACG TGAGCCCCGTCAAAATGAAGGCCCCGCGGAGGTGTCCGCCGGTAAATGTCGCCCGCAGTTCGAAT ATTTTGCTCTATATGTACTCCCAATATTGTTTGTCATGCAGACCAGACAAGACTTACGGACGACA CGAGCTACACACTGCGCTTATGTTTATGTTTAACTCTGACTCTATCTAACAATGATAGGGAGATA AGATCATCACTTGACACTAAATGAAAAGTATACAAAAAAGGAACA Right flanking sequence: Indices 16784698 -- 16785197 CAAATGTGTATTATTTTCCGTGATCAAATCATTCGACTGGGACATATTCATTCATATTTACTGGC CATACGTGTTAAGAAATTGTCACAGGTCTTTTGTAAACTAATAAGATGTTGTGGATATATTTATT TACTTTTACTTAAGCCCCATACAAATTAAGTCCTACTTTCCCGCCCCAGGAGCCCTGGGATTGGG CTCGATGCGCAATAGTTGCTTGTGCTGGCCAATCATGTGCTCGATGTGGTTGCACTCGCGGAGAT GACCCTTGAACTCATCGAGAGTCTGGTAAAGCACCGGATAGAGGGCGGGCAGGAGGCCATGATCC AGGGTCGGGAAGAGATGGTGGAGCACATGGTCACCAAAGTGGGTGAGCACCAGGAACTGCGACCA CTTGAGATCACCGCGGTCGATAATCGTGTCCACCTGGAAGAGACCCCAGTCACGATCCTCACGAT TGGCATCACCCTCGTGATAGATTTCCGGATCGTGATGCGCCGCAT Found at i:16788318 original size:8 final size:8 Alignment explanation
Indices: 16788305--16788320 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 16788295 GCAGTTTCTC 16788305 CATCTTGG 1 CATCTTGG 16788313 CATCTTGG 1 CATCTTGG 16788321 TGTCCGTCTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.12, C:0.25, G:0.25, T:0.38 Consensus pattern (8 bp): CATCTTGG Left flanking sequence: Indices 16787805 -- 16788304 ATCGAATATACCCATAAATTTCAAATTAATTAAATAAAACTACATATTTACATTTTCTCTTGCTC AGCTGGCTGGAGGGGAAAAATGTAGATGACGAGGCCGAAGGTCTTTGGCGAATTAACGATACGCT CTACGACTTAAGCGACTTTGCCGCTCGCCATCCGGGTGGTTCATCTTGGATTGAGTGCACCAGGG GAACGGATATCACCGAGCCCTTCGAGTCACATCATATCGAGGAGCGAGCTCGAGGAATGCTAAGC AAATTCGAGGTGCGAAAGGCTGCAAGGCCAAGGAACTACAAGTTCACTCTTGAAGAGAATGGTTT CTATATGACACTGAAGCGGAGAGTGCGTGAAAAGCTGAGAAAGATCGATTACTCTCCCACTAAGA AAACCGAGGTATTGTTGCGATCTTGACAAGTTACTAAAGTTCCGTCGAACGTAATATGCTTGTTC CCTATGATATACTTATTGTTCTACAATATAATCTTGCAGTTTCTC Right flanking sequence: Indices 16788321 -- 16788820 TGTCCGTCTTCCTCTTCAGTTGGGCAGGCACCGTTCTGGACTCATTGATCTTCAAGGGTCTAGCT GGATTGGCACTTTGCTGGGTGGCAACCTCAACCCACAATTATTTTCATCAACGGGACAGTTGGCG GATGTACACTTTCAATCTGACCATGATGAACTTCCGAAACTGGCGAATTTCTCACGCCCTATCAC ACCATGTTTATGCTAATTCTCTGCACGACCTGGAGATGTCCATGTTTGAGCCGTTCCTATGCTGG ATTCCGGATAGTCATTATGCCAGTAAACCTCAACGATTGATCTCAGTGGTTATCAGCCCCGTGGT ATATGTGGTCTTGTTCCAAGGGCAGTTTCTCATACGGTGAGTGGCCAAAATAGTTTTCTCTGTAT TGTACTAATAGGTTGCATTATATTTTAGCCTGGTCCTTTCCCTGACCAAAAGAAACGTTCTGTGC TGGGATGATCTCATTGGCTTCAGTCTGCCCATTTTTATATATTTA Found at i:16792865 original size:8 final size:8 Alignment explanation
Indices: 16792848--16792866 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 16792838 GGTCAAGGCG 16792848 ATCGTCCA 1 ATCGTCCA * 16792856 ATCTTCCA 1 ATCGTCCA 16792864 ATC 1 ATC 16792867 AACTGGAAGG Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.26, C:0.37, G:0.05, T:0.32 Consensus pattern (8 bp): ATCGTCCA Left flanking sequence: Indices 16792348 -- 16792847 CCAGTGTGTTTGAACAAACTCTAGGCAGACTTCCCCTATATGCCAAGTCACTACCGCACAGCGAA AGGTATTTTAATATGTTCCCTATTGATATTGCGTTTGCTATATAAGCTAGAACGCTAGAAATATA TTATCTTAGTCGTTTACACTCAGTTCAATTGAAAGGTTAATTCAAAATGATTGAATATACTAAAA TCGGATTTTTGATTGCATTCCTTCTGAGCACGATGACCCAAAGCAGTGGTGGAGCCAATATATTG GGAGTTTTCGGAACACACAGTCCTTCGCACGTGATCGTGCATATGGCTGTGATGAAAGCCCTTGC TGATCGAGGTCACAACATTACAGTGGTGACCCAGATGAAACCGAAATTGGCGACACATGAAAATA TTACCGTGATCATTGCACCGCCGACGGAGGAGAGACAGAGATATATCAAAGAATATATGGCTGAG GTATCTAATGAGAAACCTTCGTTCTGGGAGACCATGGTCAAGGCG Right flanking sequence: Indices 16792867 -- 16793366 AACTGGAAGGACAATATGAGTTTATGACGCATCCCAATGTCAAAGAGATCTACGAGAATCCAAAG ATCAAATTCGATTTGGTGTTTTTGGGATTGATGGCCAACACCTATCAGTTGGGCATTGCTGCCAA GTTGAAATGTCCGGTCATTATATCGTGGGTGGGCATTCCGCTGCCCTTCATGGACACCATTGTGG GTAATGTCAACGATCCATCGTATGTCCCGACCGTAAATGTAGCCCTTAATGCGGGTCAAAAGACC ATGGACTTTGGCCTAAGATTTGTGAACTTTTTTAAATATGCCATCATGTGCGTTTTTGAGACAGT ATTGGACTATAAGATGAACCAGTTTTACGAGTAAGTATACAACAAAAAACAGAGCTAGAAACAGC AATTGATTTATGAATTCTTTACAGGCGAGCTTTTGCTAATGAATTGGAGTTTCCAAACTATCATG AGATGAAGCGACGAGTTTCCTTGTTGTTCTATAATTACCATTCCG Found at i:16796508 original size:10 final size:10 Alignment explanation
Indices: 16796490--16796509 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 16796480 AGATGTTTAA 16796490 AAATATAATT 1 AAATATAATT * 16796500 AAATCTAATT 1 AAATATAATT 16796510 CCAATATTTT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40 Consensus pattern (10 bp): AAATATAATT Left flanking sequence: Indices 16795990 -- 16796489 CAATGAGTGCCGAAGATGAGAAAGTGCTCAACGATGGTATGGCTGGAATGGTGAAGGAGAAGCCT TCGATTTGGAATACGATGAAATCGATCTTCAGCTCGTTAGCCCTGCTCATTGATAAGCAGGTGGA CGTTTTGGAGGATCCGCGCTTCCAGGAACTCTATCTGAACAAGGGCAACAAATTCGACGTGGTCT TCGTGGGATTCTTCTTCAACACGTACCAGGTGGCGTTGGGTGCCCGGTTTAATTGCCCCGTTATA ATATCCTGGTCGGGCCCACCCATGATGATGGTCAACGAGGTGCTGGGTAATCCCGAGCTATCCAG TGTTCCCCAAATGCACATTTCCGCGCCTCCCGGTCAGCCTATGAATTTCCAGCAGCGAATGCAGA ACTTTGCCAGCACTTTGGGATTCAATGCTCTCAACATCTTCCTGAATCACAAATACAACAAGTTC TATGAGTGAGTACTTATCAATTGACTGACTGAACAAGATGTTTAA Right flanking sequence: Indices 16796510 -- 16797009 CCAATATTTTGTTTTTCAGCCGTCTTTGGAGCAAAGACAAGTCAATGCCCACTTTTGCGCAGGCC AAGAGGAATGTCTCTTTGGCGTTTTGCAATGGCCATGGCATCAGCGAAGGTCCCATTCGTCCGAA TGTGCCTGGAGTAATCGAAATTGGAGGCATCCAGGTGAAGAGCAAGCCCGATCCCCTGCCAGAGG ACATACAGGAGTTTCTGGAGAAGGGCAAGCACGGAGCCATTCTCTTCAGTTTGGGTTCCAACTTA AAGGGCGAACATATCCAGCCCGAAGTGGTAAAGACCATATTCAAGGGATTGAGCAGCCTTAAGCA GCAGGTGATCTGGAAGTGGGAGGATCCCAAGAACACGCCCGGCAAGTCGGCTAATATACTCTACA AGAAGTGGCTGCCCCAGGACGATATCCTGGCGCATCCCAAGCTCAAGCTGTTCATCACGCATGCG GGCAAGGGAGGAGTGGCTGAGGCACAGTATCATGGAGTGCCCATG Found at i:16797433 original size:9 final size:9 Alignment explanation
Indices: 16797421--16797441 Score: 28 Period size: 9 Copynumber: 2.3 Consensus size: 9 16797411 CAAAGTTTCC 16797421 AAGGGAAAG 1 AAGGGAAAG ** 16797430 AAGGTGAAG 1 AAGGGAAAG 16797439 AAG 1 AAG 16797442 CAGTAGGTTG Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.52, C:0.00, G:0.43, T:0.05 Consensus pattern (9 bp): AAGGGAAAG Left flanking sequence: Indices 16796921 -- 16797420 ATATCCTGGCGCATCCCAAGCTCAAGCTGTTCATCACGCATGCGGGCAAGGGAGGAGTGGCTGAG GCACAGTATCATGGAGTGCCCATGCTGGCGCTACCCGTGTTTGCCGATCAGCCGGGTAATGCCGA TAAGCTGGTGGCCAGTGGATATGGCCTGCAGCTGCCATTGGCCACCCTGGATGTGGATGAATTCA AGGCAGCCATTAAGGAGGTCATCGAAAATCCCAAGTACGCAAAGACATTGAAGAGCTTCTCACAG CTCTATCGCGATCGTCCTTTGAGTCCTCAAGAATCGGTCGTCTACTGGACGGAGTATGTGATCCG TCATCATGGTGCCGCTCACATGCAGAGTCCCTTGGTGCACATGAATTTCATTGCCAGCAATAATT TGGACATATATATCATCGCCGCCCTGGTGCTCTACATTGTCTTCATCATCAACAAGATCGTGTGG AAATTTGTGTGGCGCAAGTTATTTGGCAAATCGAACAAAGTTTCC Right flanking sequence: Indices 16797442 -- 16797941 CAGTAGGTTGGAAATATAGAAATTTTAACTAATTTATACTTAAAAGATTAAAAAAAAAAAAATAG TAAAACCACAAAAATGTCTTAAGTTATTTGTTAAATAGCTGAGTTAAGCACTCCTTCTGTGCACG AAATTCGGTTATCAATAACCAGCTCATAATCACCATTAACTGCCTATCTTATCCGTAAACTATTC TTATCACCGTTAAACCAGTTAAGTACAAGCAACGTCATTGAATTGAATTATATCAAATTGTAGTG TTGTAGAAACAGTGGCAACAAATTACAGTTGTTTGTTGTCTAGTGTGACAAAATCTCACTGAAAA CGATTAGATATGAAACTATGTTTGATAACAATTTCAAATTCCAAATTCACCACAGCCTACCACAA TTTTTGGTAAAGCTGTTTAAGCAGTGGTGAATTTGATCACTACTTTATAGCCTAGACACGAACCA CTTAAAAGCCATATTTCACTCTTTAGACGCAGAGCGATTCGTTAC Found at i:16797811 original size:7 final size:7 Alignment explanation
Indices: 16797796--16797814 Score: 31 Period size: 7 Copynumber: 2.7 Consensus size: 7 16797786 GTTTGATAAC * 16797796 AATTTCA 1 AATTCCA 16797803 AATTCCA 1 AATTCCA 16797810 AATTC 1 AATTC 16797815 ACCACAGCCT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.42, C:0.21, G:0.00, T:0.37 Consensus pattern (7 bp): AATTCCA Left flanking sequence: Indices 16797296 -- 16797795 TTGCCAGCAATAATTTGGACATATATATCATCGCCGCCCTGGTGCTCTACATTGTCTTCATCATC AACAAGATCGTGTGGAAATTTGTGTGGCGCAAGTTATTTGGCAAATCGAACAAAGTTTCCAAGGG AAAGAAGGTGAAGAAGCAGTAGGTTGGAAATATAGAAATTTTAACTAATTTATACTTAAAAGATT AAAAAAAAAAAAATAGTAAAACCACAAAAATGTCTTAAGTTATTTGTTAAATAGCTGAGTTAAGC ACTCCTTCTGTGCACGAAATTCGGTTATCAATAACCAGCTCATAATCACCATTAACTGCCTATCT TATCCGTAAACTATTCTTATCACCGTTAAACCAGTTAAGTACAAGCAACGTCATTGAATTGAATT ATATCAAATTGTAGTGTTGTAGAAACAGTGGCAACAAATTACAGTTGTTTGTTGTCTAGTGTGAC AAAATCTCACTGAAAACGATTAGATATGAAACTATGTTTGATAAC Right flanking sequence: Indices 16797815 -- 16798314 ACCACAGCCTACCACAATTTTTGGTAAAGCTGTTTAAGCAGTGGTGAATTTGATCACTACTTTAT AGCCTAGACACGAACCACTTAAAAGCCATATTTCACTCTTTAGACGCAGAGCGATTCGTTACAAC GCAAAGTTATCAACTTAATTAAAATTTATTTTTGCTCGTTGAGCATTGTCGATTTCTTTAAAAAC ATCATAATCCGATCATGAAATTAGTGTTATGACACACCCTAAATTTCAATGCCGCATCAATCAAT GATGTTTGACCTGGTCTTTCACCTCCTGCCGATTGATATCCAAACTTCTTCCACCCATGCTGATA TCCTCCACCACCCGGCACGTCTCGCTGGCCAGCTCCTCGGGATCCTTGACTATATCCTGAACATT CTCGATCTGCTTTTGCAGATCTGAAACCTCGTTGCGATTGGCGAATTCACCGACTCCCAGTTCGG CGTGAATGGTGTCCATCAGATTGGCCAGCAGCAGACTCTCGTTGT Found at