TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_3L assembled 2004-3-14 md5checksum:58b150ba3706a94f84f5242c20c22999 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 23771897 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Warning! 300 characters in sequence are not A, C, G, or T Found at i: i:10340461 original size:7 final size:7 Alignment explanation
Indices: 10340449--10340462 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10340439 AACACAATAT 10340449 GACTGTC 1 GACTGTC 10340456 GACTGTC 1 GACTGTC 10340463 TGGACGACAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.29, G:0.29, T:0.29 Consensus pattern (7 bp): GACTGTC Left flanking sequence: Indices 10339949 -- 10340448 GACTAATTCCAAGTAAAGGGCGATTGAGGTGCGGTTAATCCGAGCCACTTAAAAGCACTTGTCAT AAATTAACAAACGTTATTTCTAATCTAACTAAATAACAATTTCAATTAATTGCCACGTTAAGATA ATGTTGGATTTGTGGATGCTCTGTCCCGCTCTACATATTTACAAACGTATAGCCATCTCTTTCAC CGGCTAAATGGCATCCACTTTGAATTTGTTAGTTGGTAAAGCAGCTAATGGCAATTGTTTTCTTC TTGATTGGTGGTTTAGTACGGGGATAACTGTTTAAACGTAATTTAGTAATGGAGATTACTTGGAA AGGGTTTCAAGAAGCATATTTATAGCATGGCATTTCTACATGAAAAGTTTTCTACAAGAAAAGTT TTCTACTTGCTTGAAACGTAAACATTCCATACGATATTTGTGAAGAATTTCTCGGACTTGGATAC CAAAATACCACAAAAACCATTGTCAAAAATCATTAAACACAATAT Right flanking sequence: Indices 10340463 -- 10340962 TGGACGACAAGATATGGAGTACAAACGGACTGAACACAGTCGATAGGAGAAATGCATGCCATTTT TATTTCATTTTATTGTACTTATTTTTCGCTATGCCCGATAAGCAGCAAAATAAAAAATAATAACG CAAACGGCACACACACAATTTGCAGTGACACACCAAAGGCCACAATGATAATTTTATCAACTCGA AAAAAAAAATGTATATGTATTTAAAACGGAGGGAGAGAGAAAAATATAAAAAATATATATTTGCT TTATCGTGCAAAAATGGGAATGAAACGAGCAAACGGCTTCCTTGTGGCTTTCGCAATTTTCGCAG CATATTTGCCACTGTCAGTTTGGCCAAAAGGATTGTTGGCCAGGCCAGCAACCAAACGGCAGCAG CATTGCACCGCTGATTTCAACGCTTTTAAATTCCTTCACTTCTGCACTGCTGTTGCAGCAGTTAA TTTAATTTCAGCTCATAAATCAAAACTGTGCCGCGCAACAAAATG Found at i:10340586 original size:7 final size:7 Alignment explanation
Indices: 10340574--10340587 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10340564 GATAAGCAGC 10340574 AAAATAA 1 AAAATAA 10340581 AAAATAA 1 AAAATAA 10340588 TAACGCAAAC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14 Consensus pattern (7 bp): AAAATAA Left flanking sequence: Indices 10340074 -- 10340573 AGATAATGTTGGATTTGTGGATGCTCTGTCCCGCTCTACATATTTACAAACGTATAGCCATCTCT TTCACCGGCTAAATGGCATCCACTTTGAATTTGTTAGTTGGTAAAGCAGCTAATGGCAATTGTTT TCTTCTTGATTGGTGGTTTAGTACGGGGATAACTGTTTAAACGTAATTTAGTAATGGAGATTACT TGGAAAGGGTTTCAAGAAGCATATTTATAGCATGGCATTTCTACATGAAAAGTTTTCTACAAGAA AAGTTTTCTACTTGCTTGAAACGTAAACATTCCATACGATATTTGTGAAGAATTTCTCGGACTTG GATACCAAAATACCACAAAAACCATTGTCAAAAATCATTAAACACAATATGACTGTCGACTGTCT GGACGACAAGATATGGAGTACAAACGGACTGAACACAGTCGATAGGAGAAATGCATGCCATTTTT ATTTCATTTTATTGTACTTATTTTTCGCTATGCCCGATAAGCAGC Right flanking sequence: Indices 10340588 -- 10341087 TAACGCAAACGGCACACACACAATTTGCAGTGACACACCAAAGGCCACAATGATAATTTTATCAA CTCGAAAAAAAAAATGTATATGTATTTAAAACGGAGGGAGAGAGAAAAATATAAAAAATATATAT TTGCTTTATCGTGCAAAAATGGGAATGAAACGAGCAAACGGCTTCCTTGTGGCTTTCGCAATTTT CGCAGCATATTTGCCACTGTCAGTTTGGCCAAAAGGATTGTTGGCCAGGCCAGCAACCAAACGGC AGCAGCATTGCACCGCTGATTTCAACGCTTTTAAATTCCTTCACTTCTGCACTGCTGTTGCAGCA GTTAATTTAATTTCAGCTCATAAATCAAAACTGTGCCGCGCAACAAAATGTTTGCTTTTGACGCG CCGTTTTTGTCGCCAGACTACCGACATCACTGGACATGGACGTGGGACACTGGACAAGTGGAACG GACATGCAGGACGGCAGCTGGAGGATCGGGAGTAGGAGCATGCCA Found at i:10340711 original size:9 final size:9 Alignment explanation
Indices: 10340697--10340714 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 10340687 AGGGAGAGAG 10340697 AAAAATATA 1 AAAAATATA 10340706 AAAAATATA 1 AAAAATATA 10340715 TATTTGCTTT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22 Consensus pattern (9 bp): AAAAATATA Left flanking sequence: Indices 10340197 -- 10340696 ATTGTTTTCTTCTTGATTGGTGGTTTAGTACGGGGATAACTGTTTAAACGTAATTTAGTAATGGA GATTACTTGGAAAGGGTTTCAAGAAGCATATTTATAGCATGGCATTTCTACATGAAAAGTTTTCT ACAAGAAAAGTTTTCTACTTGCTTGAAACGTAAACATTCCATACGATATTTGTGAAGAATTTCTC GGACTTGGATACCAAAATACCACAAAAACCATTGTCAAAAATCATTAAACACAATATGACTGTCG ACTGTCTGGACGACAAGATATGGAGTACAAACGGACTGAACACAGTCGATAGGAGAAATGCATGC CATTTTTATTTCATTTTATTGTACTTATTTTTCGCTATGCCCGATAAGCAGCAAAATAAAAAATA ATAACGCAAACGGCACACACACAATTTGCAGTGACACACCAAAGGCCACAATGATAATTTTATCA ACTCGAAAAAAAAAATGTATATGTATTTAAAACGGAGGGAGAGAG Right flanking sequence: Indices 10340715 -- 10341214 TATTTGCTTTATCGTGCAAAAATGGGAATGAAACGAGCAAACGGCTTCCTTGTGGCTTTCGCAAT TTTCGCAGCATATTTGCCACTGTCAGTTTGGCCAAAAGGATTGTTGGCCAGGCCAGCAACCAAAC GGCAGCAGCATTGCACCGCTGATTTCAACGCTTTTAAATTCCTTCACTTCTGCACTGCTGTTGCA GCAGTTAATTTAATTTCAGCTCATAAATCAAAACTGTGCCGCGCAACAAAATGTTTGCTTTTGAC GCGCCGTTTTTGTCGCCAGACTACCGACATCACTGGACATGGACGTGGGACACTGGACAAGTGGA ACGGACATGCAGGACGGCAGCTGGAGGATCGGGAGTAGGAGCATGCCAACAGGATCTGGAGAGCT GACTAAGTCCGATTCACAGCCACCTGATGTTTGGCAAACAGCGACAGAATGTAGCCGCAATTGGC TGGGGAATACTAATGAGCCAATTTTCTAGCTGCCACAGCAAAATA Found at i:10341032 original size:7 final size:7 Alignment explanation
Indices: 10341005--10341033 Score: 30 Period size: 7 Copynumber: 4.3 Consensus size: 7 10340995 CTACCGACAT 10341005 CACTGGA 1 CACTGGA 10341012 CA-TGGA 1 CACTGGA *** 10341018 CGTGGGA 1 CACTGGA 10341025 CACTGGA 1 CACTGGA 10341032 CA 1 CA 10341034 AGTGGAACGG Statistics Matches: 16, Mismatches: 5, Indels: 2 0.70 0.22 0.09 Matches are distributed among these distances: 6 5 0.31 7 11 0.69 ACGTcount: A:0.28, C:0.24, G:0.34, T:0.14 Consensus pattern (7 bp): CACTGGA Left flanking sequence: Indices 10340505 -- 10341004 ATAGGAGAAATGCATGCCATTTTTATTTCATTTTATTGTACTTATTTTTCGCTATGCCCGATAAG CAGCAAAATAAAAAATAATAACGCAAACGGCACACACACAATTTGCAGTGACACACCAAAGGCCA CAATGATAATTTTATCAACTCGAAAAAAAAAATGTATATGTATTTAAAACGGAGGGAGAGAGAAA AATATAAAAAATATATATTTGCTTTATCGTGCAAAAATGGGAATGAAACGAGCAAACGGCTTCCT TGTGGCTTTCGCAATTTTCGCAGCATATTTGCCACTGTCAGTTTGGCCAAAAGGATTGTTGGCCA GGCCAGCAACCAAACGGCAGCAGCATTGCACCGCTGATTTCAACGCTTTTAAATTCCTTCACTTC TGCACTGCTGTTGCAGCAGTTAATTTAATTTCAGCTCATAAATCAAAACTGTGCCGCGCAACAAA ATGTTTGCTTTTGACGCGCCGTTTTTGTCGCCAGACTACCGACAT Right flanking sequence: Indices 10341034 -- 10341533 AGTGGAACGGACATGCAGGACGGCAGCTGGAGGATCGGGAGTAGGAGCATGCCAACAGGATCTGG AGAGCTGACTAAGTCCGATTCACAGCCACCTGATGTTTGGCAAACAGCGACAGAATGTAGCCGCA ATTGGCTGGGGAATACTAATGAGCCAATTTTCTAGCTGCCACAGCAAAATAGCGAAAATTAATGG CTTTGGTAAAAGTGATAGGAAACTGTAAAATTCGATTAATTATATCAACTATAAAGGACTAATAC CAGATATAGTCATAGTCTAGATTATGATATACATATATTGTACTATTTCTATAATAAATAGATTA TTTTCAAAATGTTCAAGCTTAAAATGTGTTTTGTAGTACTAATGTAAATTGCATAAAGCATAATT ATAAACTTAGCAGACAGTAAAAAAGGCATACAAATGTTGTTTTAAAATGCTTTTAATTAAAATTA AGTTAAGATAAGTTAAATTTATATATATGTATGTGGTATGCATAT Found at i:10341931 original size:8 final size:8 Alignment explanation
Indices: 10341918--10341935 Score: 36 Period size: 8 Copynumber: 2.2 Consensus size: 8 10341908 AGATAGTCGG 10341918 GGATAGTT 1 GGATAGTT 10341926 GGATAGTT 1 GGATAGTT 10341934 GG 1 GG 10341936 GACCAGAGTA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.22, C:0.00, G:0.44, T:0.33 Consensus pattern (8 bp): GGATAGTT Left flanking sequence: Indices 10341418 -- 10341917 ATAATTATAAACTTAGCAGACAGTAAAAAAGGCATACAAATGTTGTTTTAAAATGCTTTTAATTA AAATTAAGTTAAGATAAGTTAAATTTATATATATGTATGTGGTATGCATATGATAAGTTATAACA TAAGTGAACTTAATTTGATTTGCCAACTATGAATTGATTAATAAGTGTTCTTTTTGAAATAAAAT GATGACAAAAAATTAACCTAATGTTTTTTTTTATTAACATCTATCGTAAGCTAATTCCACTTGGT GATTCACTGGCCAAACAACTGGCTTTATCGCAGGTCAGTTGGCTGACTCCGTCCTCAAAAACTCC CTACACTCCCGCCGAATGGATATCTCTCGGACGGCCCTTCCCAGTTAACCAAGCCCCTTTGGCCA CAGAGCCATTTCCATTCCCATTCCCATTTCCATTCGAGGGGCACTCAAAAGCGTGACAGTAAATA GTAAGCTAAATGACAAGTACTCACAATAGTTAGATAGATAGTCGG Right flanking sequence: Indices 10341936 -- 10342435 GACCAGAGTAGAGATGGGCGACACAGATATATGTGCTGGTAGAAATCCTACAAAAACGTTGTAAA ATTCATGGAGAAAAAAAAATAGAAACTGGGTGTGTACTTATGCCAAAATGTTAGCCCTACAAGCC ATGAAGCTCGTTAAATGCCAATCGCATTGACACGACCCAAAATGCTGACTAAGTCGGTTGGAAAA CTACGTATATAAACTGCTCCACTAATCCGATGGACAGCCGCGATCATCAACTGGAAAATAGGTCT GTGGAAATATATATATATATATATATATATATATGTATGATCGCATTGAAGATACTCTGATATAT GATCTCACCAAATTTCTTAACCTTCTTATAATAGAAAGCCCTTTACAATTTATTGTATTGTAAAT AAAGCTAGCTCTTTCATTTTAATAATGAGGCAAGTGGAAAAGTTGGCTGATGAAATCGGATGTCA GCTAACGGACCACTAAATATTTGCTGGTGTGAGGTTTTTTTCTTT Found at i:10344104 original size:7 final size:7 Alignment explanation
Indices: 10344092--10344107 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 10344082 TTCGTTATTA 10344092 TTATTTT 1 TTATTTT 10344099 TTATTTT 1 TTATTTT 10344106 TT 1 TT 10344108 CGGACTCTTA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88 Consensus pattern (7 bp): TTATTTT Left flanking sequence: Indices 10343592 -- 10344091 TTGTATGTTTTAAATATCAAAATATAAATTTCTAGTATTTAACCATATATGTAAATGAGCTAAAT TTATATATTTTATTTAGAGTTGAGTGTACAAGTAATTTACTTGCTAACTCTTTCAAACCTTTTTG CATTTGACGCAGTTTTTTTTTTGTAGTGTATGTAGGTTGGAAAAAGTGAAATATATAACCCCCAT ACACTTAATGGCAGCGGCAGCAGGAAATGCTGGGCCACGATCTAAGCCCAGTACGAAACTTGTTT CGTTGGCCGGTCAACCCACATACTGCCCGTATTCAACTATACTGACGTCCGATTTGCGAGCCGGA GAACGATCTAAACAAATCATTTAGATCATTTGTTATTCATTGAAATGTATTAATTTTGAATTCAA CATTCAGCAGCGAAGCAGTCAACATTGTGTGCGGCTTACCGATACAAAGTGTGTGACTTTTGTAT CTGTATCTTACACTTTTTTCTTCATTTCATTTTCTTTCGTTATTA Right flanking sequence: Indices 10344108 -- 10344607 CGGACTCTTATTTATTTGAGTTATCGCCGGTGTCTCCACATTATTTCACTGTCGGATTTGCGTAG CATTGTTCGGGCAACGAAAACTTGAACAAAACTTCGAGCTGCAAACTGAAAACGAAAAGCCAAAA GCCAAAAGCCGATTTTCAACTAGATACGCTGGATTGGCATTGCCCCTAACGGATTGTGCGGCGAC ATAAGCTTTGATGGATTTTGACATAAATATGAGTTGGAATTTCGTGCGAGCGCGGCCATGTTTGG CATGCCAAAAGCAGAAAAGCAGGGCTTATCACTCCACCGACCATATAGACACCATATAACCGATC TATGCTCGAATCTATACGATCGATGAACGGAGTGGATTCGATTCGATCGGATTGGATTGGATTGG CAGCCAAACTGACGACGACAGGCCAGAAAATAAAAACACGGCCGTGTCCAAAAGCCACGACTATA TGGATATGTATATGTATATATAAACATATATGCGTTTGCTTATGG Found at i:10344237 original size:7 final size:7 Alignment explanation
Indices: 10344227--10344247 Score: 42 Period size: 7 Copynumber: 3.0 Consensus size: 7 10344217 ACTGAAAACG 10344227 AAAAGCC 1 AAAAGCC 10344234 AAAAGCC 1 AAAAGCC 10344241 AAAAGCC 1 AAAAGCC 10344248 GATTTTCAAC Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 14 1.00 ACGTcount: A:0.57, C:0.29, G:0.14, T:0.00 Consensus pattern (7 bp): AAAAGCC Left flanking sequence: Indices 10343727 -- 10344226 GACGCAGTTTTTTTTTTGTAGTGTATGTAGGTTGGAAAAAGTGAAATATATAACCCCCATACACT TAATGGCAGCGGCAGCAGGAAATGCTGGGCCACGATCTAAGCCCAGTACGAAACTTGTTTCGTTG GCCGGTCAACCCACATACTGCCCGTATTCAACTATACTGACGTCCGATTTGCGAGCCGGAGAACG ATCTAAACAAATCATTTAGATCATTTGTTATTCATTGAAATGTATTAATTTTGAATTCAACATTC AGCAGCGAAGCAGTCAACATTGTGTGCGGCTTACCGATACAAAGTGTGTGACTTTTGTATCTGTA TCTTACACTTTTTTCTTCATTTCATTTTCTTTCGTTATTATTATTTTTTATTTTTTCGGACTCTT ATTTATTTGAGTTATCGCCGGTGTCTCCACATTATTTCACTGTCGGATTTGCGTAGCATTGTTCG GGCAACGAAAACTTGAACAAAACTTCGAGCTGCAAACTGAAAACG Right flanking sequence: Indices 10344248 -- 10344747 GATTTTCAACTAGATACGCTGGATTGGCATTGCCCCTAACGGATTGTGCGGCGACATAAGCTTTG ATGGATTTTGACATAAATATGAGTTGGAATTTCGTGCGAGCGCGGCCATGTTTGGCATGCCAAAA GCAGAAAAGCAGGGCTTATCACTCCACCGACCATATAGACACCATATAACCGATCTATGCTCGAA TCTATACGATCGATGAACGGAGTGGATTCGATTCGATCGGATTGGATTGGATTGGCAGCCAAACT GACGACGACAGGCCAGAAAATAAAAACACGGCCGTGTCCAAAAGCCACGACTATATGGATATGTA TATGTATATATAAACATATATGCGTTTGCTTATGGGCATCGATCGGACTCAAAAACGAACGAACA CACAATTTATGCTAATCCCCTTGCTGGCCATAATTTGTATTTTGTTGCTCAGTGTAGCCGATGAA TTTTAGCAAAGTGAGCGCGTGTGGAGCATGTACAAGCAGCAGCCA Found at i:10344387 original size:8 final size:8 Alignment explanation
Indices: 10344374--10344389 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 10344364 TTGGCATGCC 10344374 AAAAGCAG 1 AAAAGCAG 10344382 AAAAGCAG 1 AAAAGCAG 10344390 GGCTTATCAC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.12, G:0.25, T:0.00 Consensus pattern (8 bp): AAAAGCAG Left flanking sequence: Indices 10343874 -- 10344373 CTGCCCGTATTCAACTATACTGACGTCCGATTTGCGAGCCGGAGAACGATCTAAACAAATCATTT AGATCATTTGTTATTCATTGAAATGTATTAATTTTGAATTCAACATTCAGCAGCGAAGCAGTCAA CATTGTGTGCGGCTTACCGATACAAAGTGTGTGACTTTTGTATCTGTATCTTACACTTTTTTCTT CATTTCATTTTCTTTCGTTATTATTATTTTTTATTTTTTCGGACTCTTATTTATTTGAGTTATCG CCGGTGTCTCCACATTATTTCACTGTCGGATTTGCGTAGCATTGTTCGGGCAACGAAAACTTGAA CAAAACTTCGAGCTGCAAACTGAAAACGAAAAGCCAAAAGCCAAAAGCCGATTTTCAACTAGATA CGCTGGATTGGCATTGCCCCTAACGGATTGTGCGGCGACATAAGCTTTGATGGATTTTGACATAA ATATGAGTTGGAATTTCGTGCGAGCGCGGCCATGTTTGGCATGCC Right flanking sequence: Indices 10344390 -- 10344889 GGCTTATCACTCCACCGACCATATAGACACCATATAACCGATCTATGCTCGAATCTATACGATCG ATGAACGGAGTGGATTCGATTCGATCGGATTGGATTGGATTGGCAGCCAAACTGACGACGACAGG CCAGAAAATAAAAACACGGCCGTGTCCAAAAGCCACGACTATATGGATATGTATATGTATATATA AACATATATGCGTTTGCTTATGGGCATCGATCGGACTCAAAAACGAACGAACACACAATTTATGC TAATCCCCTTGCTGGCCATAATTTGTATTTTGTTGCTCAGTGTAGCCGATGAATTTTAGCAAAGT GAGCGCGTGTGGAGCATGTACAAGCAGCAGCCAGTCGGGTCCATCCCATTGTGTTTAAATGATTA ATTTACATAAATATTTTTATGATTTGCCAACAAAACGGCCGACAACAGAGAGAATCTGGCAAGCT TCCAGGCTTACACTTAAATTTAAGGAGTTTTAATCATTTCTTATT Found at i:10344983 original size:7 final size:7 Alignment explanation
Indices: 10344967--10344987 Score: 28 Period size: 7 Copynumber: 3.0 Consensus size: 7 10344957 TATTGCTATA * 10344967 TTTATAT 1 TTTATTT 10344974 TTTATTT 1 TTTATTT * 10344981 TTTCTTT 1 TTTATTT 10344988 CATTTGATAT Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.14, C:0.05, G:0.00, T:0.81 Consensus pattern (7 bp): TTTATTT Left flanking sequence: Indices 10344467 -- 10344966 GATTCGATTCGATCGGATTGGATTGGATTGGCAGCCAAACTGACGACGACAGGCCAGAAAATAAA AACACGGCCGTGTCCAAAAGCCACGACTATATGGATATGTATATGTATATATAAACATATATGCG TTTGCTTATGGGCATCGATCGGACTCAAAAACGAACGAACACACAATTTATGCTAATCCCCTTGC TGGCCATAATTTGTATTTTGTTGCTCAGTGTAGCCGATGAATTTTAGCAAAGTGAGCGCGTGTGG AGCATGTACAAGCAGCAGCCAGTCGGGTCCATCCCATTGTGTTTAAATGATTAATTTACATAAAT ATTTTTATGATTTGCCAACAAAACGGCCGACAACAGAGAGAATCTGGCAAGCTTCCAGGCTTACA CTTAAATTTAAGGAGTTTTAATCATTTCTTATTTCATTTTTAAATCAGGCTTAAAACACCTTTTT AATTGATACTTCAGAATATTTTATAGCCATGCCTTTATTGCTATA Right flanking sequence: Indices 10344988 -- 10345487 CATTTGATATTTAACAAATCGAGGATTTGTTTTAAATTAGGAAGGTGTATCAGTTGTTCTTTTTT TTCTGAGTGTGCAAGGTCCAGTGGCTCTTATGCAATCCACGCAGTTGGCCGAAAAAGTTGCGCCC CTTTTTTTTTAAACTTCTGTTGGTTCTGGCCACGTGCCTTTATCGCACTGGGAGGGAGTGAGAGG GAGCGGCGCAAGAGGGAGGCAGAACTAGTTCAAGCAACTGTAAAAGCCAACCTCTATGGGCTTCG CTGTTTTTTTAGCCGCCACTGGGTGTCATCAACCTCAAACGTCTTTTGTCTTTGGCTTCGGCTAA AAAATAAAATGAAATAAAGAGCCCAGATGACAGGCTTAGTTGAGGAACCGATGGAACCGGTGGTT CTGAAAGGAAGGTGCGGATGCACAGGACACAGGACGTGAGCCACATGTGACTCAAATGCTCAAAT GCCAATGAACCCAGAAGAACGAACGACGACGACCAAACCAGGAAG Found at i:10345370 original size:9 final size:9 Alignment explanation
Indices: 10345356--10345375 Score: 33 Period size: 9 Copynumber: 2.2 Consensus size: 9 10345346 GCTTAGTTGA 10345356 GGAACCGAT 1 GGAACCGAT * 10345365 GGAACCGGT 1 GGAACCGAT 10345374 GG 1 GG 10345376 TTCTGAAAGG Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.25, C:0.20, G:0.45, T:0.10 Consensus pattern (9 bp): GGAACCGAT Left flanking sequence: Indices 10344856 -- 10345355 ACTTAAATTTAAGGAGTTTTAATCATTTCTTATTTCATTTTTAAATCAGGCTTAAAACACCTTTT TAATTGATACTTCAGAATATTTTATAGCCATGCCTTTATTGCTATATTTATATTTTATTTTTTCT TTCATTTGATATTTAACAAATCGAGGATTTGTTTTAAATTAGGAAGGTGTATCAGTTGTTCTTTT TTTTCTGAGTGTGCAAGGTCCAGTGGCTCTTATGCAATCCACGCAGTTGGCCGAAAAAGTTGCGC CCCTTTTTTTTTAAACTTCTGTTGGTTCTGGCCACGTGCCTTTATCGCACTGGGAGGGAGTGAGA GGGAGCGGCGCAAGAGGGAGGCAGAACTAGTTCAAGCAACTGTAAAAGCCAACCTCTATGGGCTT CGCTGTTTTTTTAGCCGCCACTGGGTGTCATCAACCTCAAACGTCTTTTGTCTTTGGCTTCGGCT AAAAAATAAAATGAAATAAAGAGCCCAGATGACAGGCTTAGTTGA Right flanking sequence: Indices 10345376 -- 10345875 TTCTGAAAGGAAGGTGCGGATGCACAGGACACAGGACGTGAGCCACATGTGACTCAAATGCTCAA ATGCCAATGAACCCAGAAGAACGAACGACGACGACCAAACCAGGAAGTAAATTTCTGCTTCCTAC ATCAAACGCACTGGCTGGCGGCAACAGGTGTACATAGCTTTAGACCCTCTTTTCCCGCAAGATTT CCCATCATCATTGCCATCGAAATAAAATATACTATGAACATGATATCTGCGTCAGCAAATGGATG CCGCTCCTGCATCTTGTCAAATGCCATTTAGATAAGTAAACGATCGCCATAATCTGCAATCTATA AGGCATATATCCATAATGGCATTTGCATAAATTAGATATGTAATTCAGTGACCGGCGGGATTAGT TAAATGCAAAGATATCGAATGGCGCGAAAGGAAACCACTTTTGAAGTTGATTAGACTTACACTAC ACGCTATTCTAATTATTTTCAATTTCCAACAGATTACGTTTTAAA Found at i:10345410 original size:7 final size:7 Alignment explanation
Indices: 10345398--10345412 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 10345388 GGTGCGGATG 10345398 CACAGGA 1 CACAGGA 10345405 CACAGGA 1 CACAGGA 10345412 C 1 C 10345413 GTGAGCCACA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.40, C:0.33, G:0.27, T:0.00 Consensus pattern (7 bp): CACAGGA Left flanking sequence: Indices 10344898 -- 10345397 AAATCAGGCTTAAAACACCTTTTTAATTGATACTTCAGAATATTTTATAGCCATGCCTTTATTGC TATATTTATATTTTATTTTTTCTTTCATTTGATATTTAACAAATCGAGGATTTGTTTTAAATTAG GAAGGTGTATCAGTTGTTCTTTTTTTTCTGAGTGTGCAAGGTCCAGTGGCTCTTATGCAATCCAC GCAGTTGGCCGAAAAAGTTGCGCCCCTTTTTTTTTAAACTTCTGTTGGTTCTGGCCACGTGCCTT TATCGCACTGGGAGGGAGTGAGAGGGAGCGGCGCAAGAGGGAGGCAGAACTAGTTCAAGCAACTG TAAAAGCCAACCTCTATGGGCTTCGCTGTTTTTTTAGCCGCCACTGGGTGTCATCAACCTCAAAC GTCTTTTGTCTTTGGCTTCGGCTAAAAAATAAAATGAAATAAAGAGCCCAGATGACAGGCTTAGT TGAGGAACCGATGGAACCGGTGGTTCTGAAAGGAAGGTGCGGATG Right flanking sequence: Indices 10345413 -- 10345912 GTGAGCCACATGTGACTCAAATGCTCAAATGCCAATGAACCCAGAAGAACGAACGACGACGACCA AACCAGGAAGTAAATTTCTGCTTCCTACATCAAACGCACTGGCTGGCGGCAACAGGTGTACATAG CTTTAGACCCTCTTTTCCCGCAAGATTTCCCATCATCATTGCCATCGAAATAAAATATACTATGA ACATGATATCTGCGTCAGCAAATGGATGCCGCTCCTGCATCTTGTCAAATGCCATTTAGATAAGT AAACGATCGCCATAATCTGCAATCTATAAGGCATATATCCATAATGGCATTTGCATAAATTAGAT ATGTAATTCAGTGACCGGCGGGATTAGTTAAATGCAAAGATATCGAATGGCGCGAAAGGAAACCA CTTTTGAAGTTGATTAGACTTACACTACACGCTATTCTAATTATTTTCAATTTCCAACAGATTAC GTTTTAAATGTAACCATATAAGTAAACTCATTATAAGTGAAGACA Found at i:10345441 original size:8 final size:8 Alignment explanation
Indices: 10345428--10345444 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 10345418 CCACATGTGA 10345428 CTCAAATG 1 CTCAAATG 10345436 CTCAAATG 1 CTCAAATG 10345444 C 1 C 10345445 CAATGAACCC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.35, C:0.29, G:0.12, T:0.24 Consensus pattern (8 bp): CTCAAATG Left flanking sequence: Indices 10344928 -- 10345427 TACTTCAGAATATTTTATAGCCATGCCTTTATTGCTATATTTATATTTTATTTTTTCTTTCATTT GATATTTAACAAATCGAGGATTTGTTTTAAATTAGGAAGGTGTATCAGTTGTTCTTTTTTTTCTG AGTGTGCAAGGTCCAGTGGCTCTTATGCAATCCACGCAGTTGGCCGAAAAAGTTGCGCCCCTTTT TTTTTAAACTTCTGTTGGTTCTGGCCACGTGCCTTTATCGCACTGGGAGGGAGTGAGAGGGAGCG GCGCAAGAGGGAGGCAGAACTAGTTCAAGCAACTGTAAAAGCCAACCTCTATGGGCTTCGCTGTT TTTTTAGCCGCCACTGGGTGTCATCAACCTCAAACGTCTTTTGTCTTTGGCTTCGGCTAAAAAAT AAAATGAAATAAAGAGCCCAGATGACAGGCTTAGTTGAGGAACCGATGGAACCGGTGGTTCTGAA AGGAAGGTGCGGATGCACAGGACACAGGACGTGAGCCACATGTGA Right flanking sequence: Indices 10345445 -- 10345944 CAATGAACCCAGAAGAACGAACGACGACGACCAAACCAGGAAGTAAATTTCTGCTTCCTACATCA AACGCACTGGCTGGCGGCAACAGGTGTACATAGCTTTAGACCCTCTTTTCCCGCAAGATTTCCCA TCATCATTGCCATCGAAATAAAATATACTATGAACATGATATCTGCGTCAGCAAATGGATGCCGC TCCTGCATCTTGTCAAATGCCATTTAGATAAGTAAACGATCGCCATAATCTGCAATCTATAAGGC ATATATCCATAATGGCATTTGCATAAATTAGATATGTAATTCAGTGACCGGCGGGATTAGTTAAA TGCAAAGATATCGAATGGCGCGAAAGGAAACCACTTTTGAAGTTGATTAGACTTACACTACACGC TATTCTAATTATTTTCAATTTCCAACAGATTACGTTTTAAATGTAACCATATAAGTAAACTCATT ATAAGTGAAGACATATTTTTTTAAATGCAGAGTTACTCAAGTGAA Found at i:10346280 original size:6 final size:7 Alignment explanation
Indices: 10346266--10346281 Score: 25 Period size: 6 Copynumber: 2.4 Consensus size: 7 10346256 AGTTGTTGTC 10346266 GTTGCCT 1 GTTGCCT 10346273 GTTG-CT 1 GTTGCCT 10346279 GTT 1 GTT 10346282 CGTTTAGCTA Statistics Matches: 9, Mismatches: 0, Indels: 1 0.90 0.00 0.10 Matches are distributed among these distances: 6 5 0.56 7 4 0.44 ACGTcount: A:0.00, C:0.19, G:0.31, T:0.50 Consensus pattern (7 bp): GTTGCCT Left flanking sequence: Indices 10345766 -- 10346265 TAAATGCAAAGATATCGAATGGCGCGAAAGGAAACCACTTTTGAAGTTGATTAGACTTACACTAC ACGCTATTCTAATTATTTTCAATTTCCAACAGATTACGTTTTAAATGTAACCATATAAGTAAACT CATTATAAGTGAAGACATATTTTTTTAAATGCAGAGTTACTCAAGTGAAGAACAGCTAGACACAT AAATAAGATCATTTTATATTATTATATTCAATGGCAGCAAATTGCAAAAAGGAATATATTTATAA TGCGAAATATTGTGATTTAACTTAGCTGAAACTAAAATCATTAATCACATTTTAAGCACATACAT CTCTTATCTCCTTTGGTTGCTGTATAATTAAGTTTTCCATATATAATTAATACTTTCATTCGATT ATTTTATTCCCAGTATGTTTTTTTTTATAGAGATAAGTTAATGGTGACCCCATGACAGAGACTTG GTCATCGACACCGTCATCCCAATCTCACACTCTATAGTTGTTGTC Right flanking sequence: Indices 10346282 -- 10346781 CGTTTAGCTACTCAAACCCTTTTTATGCAAATTTAAGAAAAATATATGAGTGAAAAATATAGCAG CAACAAAATGCTGTATAAATTTATATATATGTATGTATATATAGAATTATGTGGATGTGGATGTT CGTGTGTGGAGACTTTGTAGATAAATTTGCATATTTCAGTCGTTCATAATCCAAGTCTTCCTTAA GTCGAAGTCTGAGTCTGCGTCGCAGACCTTAAGGGGAAATCAGCCAAGCAGCAACGAAATCGACA ACTAAAAAAATAAGTATATATACATATATTTATAAAAAAGAAAAAAAAAGTACAGGAACAACCTG GCTACGCGTCACTTTGAGAGGCGTCGAACCATTTGAAATGCCACACCTAACTAAATTTAGGTGTT TTTTCTTCATTTTACCTTGCGCCTACTACCAAGTTTGTTGTTTATTCCTCCGCATGTTTTTAATT TACCATATTTTTTTACCACTCAAAGGAGGTAGAAAAACACCTATA Found at i:10346385 original size:10 final size:10 Alignment explanation
Indices: 10346360--10346386 Score: 33 Period size: 10 Copynumber: 2.7 Consensus size: 10 10346350 CAAAATGCTG * * 10346360 TATAAATTTA 1 TATATATGTA 10346370 TATATATGTA 1 TATATATGTA * 10346380 TGTATAT 1 TATATAT 10346387 ATAGAATTAT Statistics Matches: 14, Mismatches: 3, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 10 14 1.00 ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52 Consensus pattern (10 bp): TATATATGTA Left flanking sequence: Indices 10345860 -- 10346359 CAGATTACGTTTTAAATGTAACCATATAAGTAAACTCATTATAAGTGAAGACATATTTTTTTAAA TGCAGAGTTACTCAAGTGAAGAACAGCTAGACACATAAATAAGATCATTTTATATTATTATATTC AATGGCAGCAAATTGCAAAAAGGAATATATTTATAATGCGAAATATTGTGATTTAACTTAGCTGA AACTAAAATCATTAATCACATTTTAAGCACATACATCTCTTATCTCCTTTGGTTGCTGTATAATT AAGTTTTCCATATATAATTAATACTTTCATTCGATTATTTTATTCCCAGTATGTTTTTTTTTATA GAGATAAGTTAATGGTGACCCCATGACAGAGACTTGGTCATCGACACCGTCATCCCAATCTCACA CTCTATAGTTGTTGTCGTTGCCTGTTGCTGTTCGTTTAGCTACTCAAACCCTTTTTATGCAAATT TAAGAAAAATATATGAGTGAAAAATATAGCAGCAACAAAATGCTG Right flanking sequence: Indices 10346387 -- 10346886 ATAGAATTATGTGGATGTGGATGTTCGTGTGTGGAGACTTTGTAGATAAATTTGCATATTTCAGT CGTTCATAATCCAAGTCTTCCTTAAGTCGAAGTCTGAGTCTGCGTCGCAGACCTTAAGGGGAAAT CAGCCAAGCAGCAACGAAATCGACAACTAAAAAAATAAGTATATATACATATATTTATAAAAAAG AAAAAAAAAGTACAGGAACAACCTGGCTACGCGTCACTTTGAGAGGCGTCGAACCATTTGAAATG CCACACCTAACTAAATTTAGGTGTTTTTTCTTCATTTTACCTTGCGCCTACTACCAAGTTTGTTG TTTATTCCTCCGCATGTTTTTAATTTACCATATTTTTTTACCACTCAAAGGAGGTAGAAAAACAC CTATATCACCTAGGCAATTTCTCCTTTTCGAATGAAGGAGGCGGGGTGAATCTCTAGTCGGTGAT TAGCATTTTTGTTGAGTATTTAATTTGATTTTATTGAATTTGTTA Found at i:10348734 original size:10 final size:10 Alignment explanation
Indices: 10348713--10348735 Score: 32 Period size: 10 Copynumber: 2.3 Consensus size: 10 10348703 TTTGACACAC * 10348713 AAAATAAGAA 1 AAAATAAAAA * 10348723 AAAATTAAAA 1 AAAATAAAAA 10348733 AAA 1 AAA 10348736 CACGCATTTG Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.83, C:0.00, G:0.04, T:0.13 Consensus pattern (10 bp): AAAATAAAAA Left flanking sequence: Indices 10348213 -- 10348712 TTTTGAAAGGCAAATTGATTATAAATTATGACGCTGCCAGCTAACTGACAACTATTTAAGATTCC AACAATTATGATTTATGGCGGTGTGTGTGCATAATGAGGATGAGATACCTTGACATGATCGCACA GAATCGCAGAAAAAAAAAGTTTACGCGGACTAGATCTTTGCGTAACTAATAAAAACGTTGAAAAA AGCTCGCAAAAGTTTGATCAAAACCAGCTGAGATCAACTGCCATCAATCATTAACCCAAAAATTA GTCACTCTATTTTTCTTTTTTTTTTTTGCCGAGTCGAGCTTCTTTTTTGGTTAGTTTGCCGAGTT CAAGGCATTCGCCTTGGCTACTTTTGGCAAACTTTTCGGGCAGCCCCCGCAAAAAAAAATATCAG CTCGACATGCTGGTATGGGTTCATAATGTGTATTTAATAGACCATTTTACAAGCTAACTACAAAT GAGACGCTGAAATCATCAAGGTCAGGTTCAAATTATTTGACACAC Right flanking sequence: Indices 10348736 -- 10349235 CACGCATTTGAAAAGGAAATTTAGACGGATGAGTAATGTGTAGCTAAAAATAGTTATATCACATT TAAAGAAAAATTGAGAACTTTAAATGAAGTTGCTTATTAAAATATTTTGTAGTTACACAAATAGA TACACTTAAAACACTAATAAATTTGCACATTTTAATAAATTTGTATACTAATAGTTTCTGAAAGC ATTTCTGCAGCTGTTACCCCTCACTTTTATCGGGAATGTCACGTATATAAAGTACATATTCAATT CCTGTTGGTGCATATACAATATTGCGCAAATTTCGAATAAAAAATATTAAGCAATAACTAAATAA CAAGTGTGAATATGAAACGTGCCACTTGCAGCTGTTGATAACGAACGGCAAACATAGCTCGACTA AATATATATATTTTTTAAGCGAATTTATAATAATCAACATGATTTATTTGGCAGAGGTCATTGCT GTCTGCCGCCCAAAAACATTTTTCTCGTATTTTAAAATAGTTTTT Found at i:10349442 original size:7 final size:7 Alignment explanation
Indices: 10349426--10349445 Score: 33 Period size: 7 Copynumber: 2.9 Consensus size: 7 10349416 TTTTCCAGCT 10349426 AAACTGG 1 AAACTGG * 10349433 AAACTTG 1 AAACTGG 10349440 AAACTG 1 AAACTG 10349446 TATGCCCCGA Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.45, C:0.15, G:0.20, T:0.20 Consensus pattern (7 bp): AAACTGG Left flanking sequence: Indices 10348926 -- 10349425 AAAGCATTTCTGCAGCTGTTACCCCTCACTTTTATCGGGAATGTCACGTATATAAAGTACATATT CAATTCCTGTTGGTGCATATACAATATTGCGCAAATTTCGAATAAAAAATATTAAGCAATAACTA AATAACAAGTGTGAATATGAAACGTGCCACTTGCAGCTGTTGATAACGAACGGCAAACATAGCTC GACTAAATATATATATTTTTTAAGCGAATTTATAATAATCAACATGATTTATTTGGCAGAGGTCA TTGCTGTCTGCCGCCCAAAAACATTTTTCTCGTATTTTAAAATAGTTTTTTCGTTTATTATTTTT CTTTTTTTTTGAGATTTTTTTTTTTATTTGCCCGAGCATAAACTTGATTTATTTGCCAGGCCAAT GCCAAAAGGAGAATGCATTAAAAGAAAAAAATAATCGGTGAGAGACGGGTTATTTGGGTATTTGG CTGCCAAAAAAAAAAAAAAAATGTCTCAAATGAGCTTTTCCAGCT Right flanking sequence: Indices 10349446 -- 10349945 TATGCCCCGACCGATTAAACTGTCGTCGAATGGCCCGGCAATTTGCAACATTTTCCTTGCTAATT AAAACACTCAAATCCATTTAGCAGCTCGTAGGTTCTGCTGCGGGCCTTTTACCATGGGCTATACA AACGAGACTGGCCCTTAAGCCGATTAGCGCATCGAATTCCAAGTCAAGTCGTATGACAACCGAGG CCTAGGCTTCTTCCCCTTCCCCTCGCCATGCCCAACGACAATGTTATCAAATATCAATAAAATGA GTGCAATACGGACAGCATACCCTTCTTTCCCTGGCTTTTTGTAGTCTATATTTAGATGCATATTC CATTAAGTGCAACATTGTTGCAAATCGACTCCAGATTAACGGATCCAAAGATCTCGGAACGCTGT TGATGCGACTTTTTGATGAGCCATTTCATTACAATTTTAGTGCGCTTACGATTGAAATGATGGGA CTTTCGCTGCGAATTTTATTAGTTTAACGATAAGGTGTTAACTAA Found at i:10350508 original size:9 final size:9 Alignment explanation
Indices: 10350490--10350508 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 10350480 AGTGTTTTCA * 10350490 GGGGGGGTG 1 GGGCGGGTG 10350499 GGGCGGGTG 1 GGGCGGGTG 10350508 G 1 G 10350509 AAAGGGGTTG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.00, C:0.05, G:0.84, T:0.11 Consensus pattern (9 bp): GGGCGGGTG Left flanking sequence: Indices 10349990 -- 10350489 GTTGCTGTTTTATCAGCTTTATTGCAGTTGCTAAGTGCTTTTACAAATCCAGCATTTCTTTTTAT ATATTCGGCGATAAAATTGCGAGCAATTTGAAACTATAAATATTTAGTCTTAGATAACGAAATGT TTTTAGCTTAATGGTTATCGTAAACAATTTTTATAGAATAGAATTAGTTTTTCTTGAACTAAACA TTCAACTTTGGCACTACTTTCATATATGTATGTATATTTTATTCCTGTTTTTGGTAGAACCAATT TCTCATAGTTTAAAGGCCGGGGATTTTTCGAGCGTACCCACTTATTAGCACATGATAGATTGCTG CCGGTTGAGGGCACCGTTATTTGCACTTTACTTTACATTTTTACAACAGCCAAAACATTTAAGCC AAAATCAACATGCCAGCGACGACAGAGTCATAAAACGAGTGCCAAGAAAATGCAGCGCAAAGCTG AACGAAAACCAAGTGCAAGGCGACACACGGGGCGGAGTGTTTTCA Right flanking sequence: Indices 10350509 -- 10351008 AAAGGGGTTGGGTGTTCTTTGGTCTCTTCGCACAGGGATGCAGTTGGCAAGTGGGCGTGGTATTC CGAGGGGGGGTGTGGGGTCTATAAGGCAGGGGTAATTGCAACTAGTGATTTTCGCGCATGTTTCA TAGTTTTAGGTGGTTGCTCTGCCAAAAGTTGTTTGTTGCTGTTGTCGCCTGTCGTTGTCATTATG TGTGCTCCACTAAACACTGAACAAAATAAATATGTTTATAGGTTCATATATAAACTTCATTATAA ATTGCATTACGCCATTAATAGATGTTTGAAGAATGTTTCGTTAATAAGTTTTCCTACTTGTGAAT GAATGGTTTCCTGCAATTTTAAGTGCAATTTTCTTGCAGTGCAGTCGCGTTTAGATTTTTGGAGA GTGGGCACCGAGTGTGTGCCCTGTCTCGTGCAATTTTCAAATCAATTTTGTTTACTTTTTATGCA GCGAACACCGAAGCGACAAACACGCACGGCCACTTTCCACTTTCC Found at i:10350726 original size:7 final size:7 Alignment explanation
Indices: 10350711--10350726 Score: 25 Period size: 7 Copynumber: 2.3 Consensus size: 7 10350701 ATGTGTGCTC 10350711 CACTAAA 1 CACTAAA * 10350718 CACTGAA 1 CACTAAA 10350725 CA 1 CA 10350727 AAATAAATAT Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.50, C:0.31, G:0.06, T:0.12 Consensus pattern (7 bp): CACTAAA Left flanking sequence: Indices 10350211 -- 10350710 TGTATGTATATTTTATTCCTGTTTTTGGTAGAACCAATTTCTCATAGTTTAAAGGCCGGGGATTT TTCGAGCGTACCCACTTATTAGCACATGATAGATTGCTGCCGGTTGAGGGCACCGTTATTTGCAC TTTACTTTACATTTTTACAACAGCCAAAACATTTAAGCCAAAATCAACATGCCAGCGACGACAGA GTCATAAAACGAGTGCCAAGAAAATGCAGCGCAAAGCTGAACGAAAACCAAGTGCAAGGCGACAC ACGGGGCGGAGTGTTTTCAGGGGGGGTGGGGCGGGTGGAAAGGGGTTGGGTGTTCTTTGGTCTCT TCGCACAGGGATGCAGTTGGCAAGTGGGCGTGGTATTCCGAGGGGGGGTGTGGGGTCTATAAGGC AGGGGTAATTGCAACTAGTGATTTTCGCGCATGTTTCATAGTTTTAGGTGGTTGCTCTGCCAAAA GTTGTTTGTTGCTGTTGTCGCCTGTCGTTGTCATTATGTGTGCTC Right flanking sequence: Indices 10350727 -- 10351226 AAATAAATATGTTTATAGGTTCATATATAAACTTCATTATAAATTGCATTACGCCATTAATAGAT GTTTGAAGAATGTTTCGTTAATAAGTTTTCCTACTTGTGAATGAATGGTTTCCTGCAATTTTAAG TGCAATTTTCTTGCAGTGCAGTCGCGTTTAGATTTTTGGAGAGTGGGCACCGAGTGTGTGCCCTG TCTCGTGCAATTTTCAAATCAATTTTGTTTACTTTTTATGCAGCGAACACCGAAGCGACAAACAC GCACGGCCACTTTCCACTTTCCCAGCCCGCTCGACATTTTCCCCCCGATTCGCCGCTAGTTGGGC TCACTTTTTAGTTGGGTTCACTTCACTTTGGTGCGGTGCGGTGCATCATCGAGTGTGTGTTTAAC AACATTTTTATGGTTTGGCACACACCCCAAGACGATGGGCAAACAAAAGGAACAGAATAATGTTT GTTGTGCGATGCGATGGCTAACTGTAAATTATACATTTCATAATT Found at i:10351005 original size:7 final size:7 Alignment explanation
Indices: 10350993--10351008 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 10350983 ACACGCACGG 10350993 CCACTTT 1 CCACTTT 10351000 CCACTTT 1 CCACTTT 10351007 CC 1 CC 10351009 CAGCCCGCTC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.12, C:0.50, G:0.00, T:0.38 Consensus pattern (7 bp): CCACTTT Left flanking sequence: Indices 10350493 -- 10350992 GGGGTGGGGCGGGTGGAAAGGGGTTGGGTGTTCTTTGGTCTCTTCGCACAGGGATGCAGTTGGCA AGTGGGCGTGGTATTCCGAGGGGGGGTGTGGGGTCTATAAGGCAGGGGTAATTGCAACTAGTGAT TTTCGCGCATGTTTCATAGTTTTAGGTGGTTGCTCTGCCAAAAGTTGTTTGTTGCTGTTGTCGCC TGTCGTTGTCATTATGTGTGCTCCACTAAACACTGAACAAAATAAATATGTTTATAGGTTCATAT ATAAACTTCATTATAAATTGCATTACGCCATTAATAGATGTTTGAAGAATGTTTCGTTAATAAGT TTTCCTACTTGTGAATGAATGGTTTCCTGCAATTTTAAGTGCAATTTTCTTGCAGTGCAGTCGCG TTTAGATTTTTGGAGAGTGGGCACCGAGTGTGTGCCCTGTCTCGTGCAATTTTCAAATCAATTTT GTTTACTTTTTATGCAGCGAACACCGAAGCGACAAACACGCACGG Right flanking sequence: Indices 10351009 -- 10351508 CAGCCCGCTCGACATTTTCCCCCCGATTCGCCGCTAGTTGGGCTCACTTTTTAGTTGGGTTCACT TCACTTTGGTGCGGTGCGGTGCATCATCGAGTGTGTGTTTAACAACATTTTTATGGTTTGGCACA CACCCCAAGACGATGGGCAAACAAAAGGAACAGAATAATGTTTGTTGTGCGATGCGATGGCTAAC TGTAAATTATACATTTCATAATTTTCGCAACATACTTCATGATAATCGCATGTAATTGCACTTTA TCTACACCTTTCCATCCCTGCTCGAACAACTGAAAGTTTTTTTTGTGTTATTTTTGTTTTTATGT TATATTTCGAGTACAACCCCCTGGCTTGTTTGCACCTTCATTTGGGAACTTACTGGTCGCTTGGA AAAGTGCAGAATGCAAAATGTAAAATGCATTTTCAGGGTGCGCTTCAATGGTCGGTTTACATCGG CCGATAGCAAATTATGCGAGCAAACGGTAAATGCACTCAATTACA Found at i:10351418 original size:7 final size:7 Alignment explanation
Indices: 10351399--10351427 Score: 37 Period size: 7 Copynumber: 4.1 Consensus size: 7 10351389 GTCGCTTGGA * 10351399 AAAGTGC 1 AAAATGC * 10351406 AGAATGC 1 AAAATGC * 10351413 AAAATGT 1 AAAATGC 10351420 AAAATGC 1 AAAATGC 10351427 A 1 A 10351428 TTTTCAGGGT Statistics Matches: 17, Mismatches: 5, Indels: 0 0.77 0.23 0.00 Matches are distributed among these distances: 7 17 1.00 ACGTcount: A:0.52, C:0.10, G:0.21, T:0.17 Consensus pattern (7 bp): AAAATGC Left flanking sequence: Indices 10350899 -- 10351398 GTGGGCACCGAGTGTGTGCCCTGTCTCGTGCAATTTTCAAATCAATTTTGTTTACTTTTTATGCA GCGAACACCGAAGCGACAAACACGCACGGCCACTTTCCACTTTCCCAGCCCGCTCGACATTTTCC CCCCGATTCGCCGCTAGTTGGGCTCACTTTTTAGTTGGGTTCACTTCACTTTGGTGCGGTGCGGT GCATCATCGAGTGTGTGTTTAACAACATTTTTATGGTTTGGCACACACCCCAAGACGATGGGCAA ACAAAAGGAACAGAATAATGTTTGTTGTGCGATGCGATGGCTAACTGTAAATTATACATTTCATA ATTTTCGCAACATACTTCATGATAATCGCATGTAATTGCACTTTATCTACACCTTTCCATCCCTG CTCGAACAACTGAAAGTTTTTTTTGTGTTATTTTTGTTTTTATGTTATATTTCGAGTACAACCCC CTGGCTTGTTTGCACCTTCATTTGGGAACTTACTGGTCGCTTGGA Right flanking sequence: Indices 10351428 -- 10351927 TTTTCAGGGTGCGCTTCAATGGTCGGTTTACATCGGCCGATAGCAAATTATGCGAGCAAACGGTA AATGCACTCAATTACATATTATATTTGGGTTACAAGCCTGGTCAGCAACCCCGAAAAGGAGTTGT CCTGTTTTGGCCCTATACTATAACTTGGCTCCCTGCGACTTTCACCGACGTGCCGACGGGTAGCT AATGGCCTTTATACCCAAACTTACACACAAAATTCCCCTCGAATGTTGTGATAACAACTCACGTG ATTATCAATTTGACACCCAAACACTGAAATTGGCCAAAGGAAAGGTTGCCAAAACACGGTACCGA AATGTTCTTTTTGGCTACCAACTCATTGGTTTTTTTTTTTTTAATTTTTGTGGCCTAAAGGGGGA AAGGGGATTAAAGCCAAATGCAGATGGTTGCGTTGGCCAAATGATGTGAAAAGCAGGGGGCAAAG CTACTTCGCACTGAACAAAACTTGTTTTGTGCCTTCAAAAACTTT Found at i:10352506 original size:8 final size:8 Alignment explanation
Indices: 10352489--10352522 Score: 47 Period size: 8 Copynumber: 4.2 Consensus size: 8 10352479 TGTACCTTCA * 10352489 TACATATG 1 TACGTATG 10352497 TACGTATG 1 TACGTATG * 10352505 TATGTATG 1 TACGTATG * 10352513 TATGTATG 1 TACGTATG 10352521 TA 1 TA 10352523 GTTTACGCAC Statistics Matches: 24, Mismatches: 2, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 24 1.00 ACGTcount: A:0.29, C:0.06, G:0.21, T:0.44 Consensus pattern (8 bp): TACGTATG Left flanking sequence: Indices 10351989 -- 10352488 ATAAAAGCCAACAAAAACGTATATGTGTTTAATATAACTCTTAATAAACTATTTCAACTATTTAT GTACGTTTAACAAATTTGTTACAATCTTTCAGAATCTTTTTTTTACCGAAAGTCAACACCATTTT ATCATCAACTCGGTGCCAGTTATACAGCATGAAACAACTTTTACCCATCTGCATAATTTAAGTGT AAACGAATTTTTGAAAAAAAAAAATAATTTATTCAAAAAGCATTTTCCTCGACAAATACGAATAA ACGATTCGAAGATATGGCGAGAGTATAAAGAAGACGGCGAGTTTAATTATGCTGTCAAAGTGGCT TAAAAAAGACTTTCATCTTTCACCCAGGCCAAAAAAAACCCGAAGAGGCTACCAGCCAAGGTCCA GCTAAGTAGAGGAAAAACGAAAATAAATTCGAATTTATAATCGCTTAATTACATTTGACATGACA TGTTGACGGAGTGGCGAATAAAATGCTGTTGGATCTGTACCTTCA Right flanking sequence: Indices 10352523 -- 10353022 GTTTACGCACAAGATCAAGTGGCATTAAAGCAGCAGCGATTGGAACAATTATAACAATTTTTTTT CTCGAGCTGAACAAATTTAGAAATAAGAAAAGAGAAAACAGGAAATGAGATATTAGTCCACGATC AGAAGATACAATTTGTATTACTAAATTCTTTTAACTTTCAGATATAGTACACACACATATTGCTA GATGGTGTGTAAGTAATAAAGATGTGCTTGTATATTTTTAATTTATATTATAGTAAATTTTTCAG ATTGCATAAGGTAAAACACTCATTTATTTTTGATTTTAGCAAATAAAGTCAGAGGCGTCTGCGCT ATAAAACGATTTAGAAAATTACACTGATGAATTAATGATGCAAAATCGTTTAGCTGTTTGAAAAT CACTTAGCAAATTATGAAGTGCATGTTGCACACCATTGCCTCCCCTGGACCATTCATTTAAATTT ACTGAATCATAAAGGAGTTAATTCGGGGTAAGCAATTTGCGCAGG Found at i:10352623 original size:7 final size:7 Alignment explanation
Indices: 10352613--10352637 Score: 27 Period size: 7 Copynumber: 3.4 Consensus size: 7 10352603 TTTAGAAATA 10352613 AGAAAAG 1 AGAAAAG * 10352620 AGAAAAC 1 AGAAAAG * 10352627 AGGAAATG 1 A-GAAAAG 10352635 AGA 1 AGA 10352638 TATTAGTCCA Statistics Matches: 14, Mismatches: 3, Indels: 2 0.74 0.16 0.11 Matches are distributed among these distances: 7 9 0.64 8 5 0.36 ACGTcount: A:0.64, C:0.04, G:0.28, T:0.04 Consensus pattern (7 bp): AGAAAAG Left flanking sequence: Indices 10352113 -- 10352612 CATTTTATCATCAACTCGGTGCCAGTTATACAGCATGAAACAACTTTTACCCATCTGCATAATTT AAGTGTAAACGAATTTTTGAAAAAAAAAAATAATTTATTCAAAAAGCATTTTCCTCGACAAATAC GAATAAACGATTCGAAGATATGGCGAGAGTATAAAGAAGACGGCGAGTTTAATTATGCTGTCAAA GTGGCTTAAAAAAGACTTTCATCTTTCACCCAGGCCAAAAAAAACCCGAAGAGGCTACCAGCCAA GGTCCAGCTAAGTAGAGGAAAAACGAAAATAAATTCGAATTTATAATCGCTTAATTACATTTGAC ATGACATGTTGACGGAGTGGCGAATAAAATGCTGTTGGATCTGTACCTTCATACATATGTACGTA TGTATGTATGTATGTATGTAGTTTACGCACAAGATCAAGTGGCATTAAAGCAGCAGCGATTGGAA CAATTATAACAATTTTTTTTCTCGAGCTGAACAAATTTAGAAATA Right flanking sequence: Indices 10352638 -- 10353137 TATTAGTCCACGATCAGAAGATACAATTTGTATTACTAAATTCTTTTAACTTTCAGATATAGTAC ACACACATATTGCTAGATGGTGTGTAAGTAATAAAGATGTGCTTGTATATTTTTAATTTATATTA TAGTAAATTTTTCAGATTGCATAAGGTAAAACACTCATTTATTTTTGATTTTAGCAAATAAAGTC AGAGGCGTCTGCGCTATAAAACGATTTAGAAAATTACACTGATGAATTAATGATGCAAAATCGTT TAGCTGTTTGAAAATCACTTAGCAAATTATGAAGTGCATGTTGCACACCATTGCCTCCCCTGGAC CATTCATTTAAATTTACTGAATCATAAAGGAGTTAATTCGGGGTAAGCAATTTGCGCAGGCGCTT TCAGCTCAGCCGATGACATTTATTGTGGTGCTCGACCAAAAAAAAAAATATATATATAAAATGCA TTAAAATATCGGGGAAAAAATGAAAATAAAAGGAGATGTGGAAAA Found at i:10353556 original size:9 final size:9 Alignment explanation
Indices: 10353544--10353565 Score: 30 Period size: 9 Copynumber: 2.4 Consensus size: 9 10353534 CTCCTTTCCG * 10353544 TTTCAATTT 1 TTTCAACTT * 10353553 TTTCCACTT 1 TTTCAACTT 10353562 TTTC 1 TTTC 10353566 GTTTCTCATT Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.14, C:0.23, G:0.00, T:0.64 Consensus pattern (9 bp): TTTCAACTT Left flanking sequence: Indices 10353044 -- 10353543 CATTTATTGTGGTGCTCGACCAAAAAAAAAAATATATATATAAAATGCATTAAAATATCGGGGAA AAAATGAAAATAAAAGGAGATGTGGAAAACAAAAGGCGGCCATGTTGCGGCCAACCGCAGAGTTA TTATTTAAATGTGCATTGCAGTTAAAATCGACAGTTGGCTGTCGTTGGCAGCCTGCTTCTCTTAA CCCATTCCGGTATGAAACATCTACCCAAAAACCCTTACCATTACCATTACCATTTCCACTGGGCA CAACCATTCCCCCATGACTGCTGACATGTTGTCATCAACCCTTTCGCTGCTCTGCGGCTGCGGCG GCGTCATAATTAATAAGAGAAATCCCTTTTCAATTTGACGGAGTGCATTTGTCATTGCATTTAAT TTGCGGAGTACGCCAAAGGACGCAGGACTCCGGAAGTTTCGGGCAAAACGGGGGGGATCGTTTCA ATCGTCTGGTGTCAAGTAGGGGCTGTTCCCTTCTGCTCCTTTCCG Right flanking sequence: Indices 10353566 -- 10354065 GTTTCTCATTTTTTTGGTTTTTTCGGTTTTCACACGAAACATTATTTAAATGCCCGCCTAGAAGG ACGCGCGTTAAGGATGCGAGCCAAATGAAATGCGTTAATTGATTTTTATGTCGTTATGTTTGTCG CGTTCAATGGCATTGGTATTGGAAAAGGGTTTTCTTTTTCCGAAAAACAGTTGGCTAATAGTCAT TTAAGTGGCTAACAGTTGGTCTAACTAGGTGGGATGGGGCGATCGTGGTTATGGCTGATTGGTCG TGAAGGAATGCAAGAAGCATTATAAAAATGGCAGATGTGAGAGGAAAATGGACGCGACTTAAAAT AAAAAAGATACAACAAAAGTTTGGATAAATTTCAATTTATATACATAATACTGTTTTGATTTCAT TTTTTATATTTTTGTAAATAATTAAAATAAATGAAAGTTATAAACATTTTTTGGCTTGATCCAAA TCATTTTCGCAAAAATTCTAAAATGTTACTTAATTTAAGTTGATT Found at i:10353588 original size:9 final size:9 Alignment explanation
Indices: 10353574--10353595 Score: 37 Period size: 9 Copynumber: 2.4 Consensus size: 9 10353564 TCGTTTCTCA * 10353574 TTTTTTTGG 1 TTTTTTCGG 10353583 TTTTTTCGG 1 TTTTTTCGG 10353592 TTTT 1 TTTT 10353596 CACACGAAAC Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.00, C:0.05, G:0.18, T:0.77 Consensus pattern (9 bp): TTTTTTCGG Left flanking sequence: Indices 10353074 -- 10353573 AATATATATATAAAATGCATTAAAATATCGGGGAAAAAATGAAAATAAAAGGAGATGTGGAAAAC AAAAGGCGGCCATGTTGCGGCCAACCGCAGAGTTATTATTTAAATGTGCATTGCAGTTAAAATCG ACAGTTGGCTGTCGTTGGCAGCCTGCTTCTCTTAACCCATTCCGGTATGAAACATCTACCCAAAA ACCCTTACCATTACCATTACCATTTCCACTGGGCACAACCATTCCCCCATGACTGCTGACATGTT GTCATCAACCCTTTCGCTGCTCTGCGGCTGCGGCGGCGTCATAATTAATAAGAGAAATCCCTTTT CAATTTGACGGAGTGCATTTGTCATTGCATTTAATTTGCGGAGTACGCCAAAGGACGCAGGACTC CGGAAGTTTCGGGCAAAACGGGGGGGATCGTTTCAATCGTCTGGTGTCAAGTAGGGGCTGTTCCC TTCTGCTCCTTTCCGTTTCAATTTTTTCCACTTTTTCGTTTCTCA Right flanking sequence: Indices 10353596 -- 10354095 CACACGAAACATTATTTAAATGCCCGCCTAGAAGGACGCGCGTTAAGGATGCGAGCCAAATGAAA TGCGTTAATTGATTTTTATGTCGTTATGTTTGTCGCGTTCAATGGCATTGGTATTGGAAAAGGGT TTTCTTTTTCCGAAAAACAGTTGGCTAATAGTCATTTAAGTGGCTAACAGTTGGTCTAACTAGGT GGGATGGGGCGATCGTGGTTATGGCTGATTGGTCGTGAAGGAATGCAAGAAGCATTATAAAAATG GCAGATGTGAGAGGAAAATGGACGCGACTTAAAATAAAAAAGATACAACAAAAGTTTGGATAAAT TTCAATTTATATACATAATACTGTTTTGATTTCATTTTTTATATTTTTGTAAATAATTAAAATAA ATGAAAGTTATAAACATTTTTTGGCTTGATCCAAATCATTTTCGCAAAAATTCTAAAATGTTACT TAATTTAAGTTGATTTAAGCCATTGGGCACATATCATTCCTCACA Found at i:10354925 original size:10 final size:10 Alignment explanation
Indices: 10354897--10354930 Score: 38 Period size: 10 Copynumber: 3.3 Consensus size: 10 10354887 TCCACCTGCC 10354897 GCCATCCAAT 1 GCCATCCAAT ** 10354907 GCGTTCCAAT 1 GCCATCCAAT * 10354917 GCCAACCAAAT 1 GCCATCC-AAT 10354928 GCC 1 GCC 10354931 TCCCCCTTTT Statistics Matches: 18, Mismatches: 5, Indels: 1 0.75 0.21 0.04 Matches are distributed among these distances: 10 12 0.67 11 6 0.33 ACGTcount: A:0.29, C:0.38, G:0.15, T:0.18 Consensus pattern (10 bp): GCCATCCAAT Left flanking sequence: Indices 10354397 -- 10354896 TTCTCTCGCTGCTTCTATGGCAAAGATTTTCCAACGGAAGCGGATGCATTCGAGGAGTCAAAGCC AAAAGCTGTAGCTGAAGCTGTTTGTGTTTTAAATTGGCAACGCGCTTTTGCATATCCGTTAGCGA GATGCATGATTAGATGAGGCTGCAAAGGGGGTTACAGTGGGCGAAAATATGCACTGGAAAAAATT GTTTACTATATATTGTATACATTTTAGACGTTTATTCTTAGTAGGAAATTTCTCTGGCTATTAGA GTAATTAGCAATATCTGTAATTTTTGATAGAAGCGAGTTCTAAATTAGATTACGACTATATTTAA CTACCAATTTTCGATATCGATCGCTATGTTTTTTTCCGAGTGCAAGTGGAAATGTCGGCGGCAGC CAATAATTGATTATCCAACCATTTGGCTGCAGCATCAGCGATTGCTCAAAATGCGCAAGCGACAG CAGGTGAAGCGGGGCAAATGCGACCGTTACCTGCGTCCACCTGCC Right flanking sequence: Indices 10354931 -- 10355430 TCCCCCTTTTCAGCCACTTTGCCCAGATGAGATTTTCAATTTGGCTAGGGCTCGGCCCGAAATGT TTGCGTATTAAATTTGCATGGAAATCTGTCTATATTGACCGAGAATGGCCAATGCAAATGTTTGC CGGCCAAATGAATGGCCAGTGAACACCCCGTACAGTGGACACTGGCCGCACGGACAGCGGACAGC TGAGATCGGCCATTGCACCCGGTGCAAATGGTGAACCAACATTGGAACATCGGACATGGGGCATT GGCATTTGCCTTCGCCAATGCTCTTTGGGCATTTATAATACCCAGCCGCTAGCGTTTGGCTTGCC GTTGTTTTTGCCAAATGTTATCAGTTCGGACTGCGACATCATCATCCATACACACAGTAAGAAAT AATGTGAGCTTAGCAATTTTGGGAATAAATATTTGGAACTTTATTGCAAGACAAACATGTTTAAA TGTGTAGAGCTTATAATGATAGCAATCATATAAAACAATCCAGTT Found at