TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_3L assembled 2004-3-14 md5checksum:58b150ba3706a94f84f5242c20c22999 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 23771897 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Warning! 300 characters in sequence are not A, C, G, or T Found at i: i:20399415 original size:7 final size:7 Alignment explanation
Indices: 20399403--20399443 Score: 38 Period size: 7 Copynumber: 6.0 Consensus size: 7 20399393 AGCATAATTG 20399403 TTATATT 1 TTATATT 20399410 TTATA-- 1 TTATATT 20399415 TTATATT 1 TTATATT * 20399422 ATATATT 1 TTATATT * * 20399429 ATATTTTT 1 TTA-TATT 20399437 TTATATT 1 TTATATT 20399444 AATTATGTTT Statistics Matches: 27, Mismatches: 4, Indels: 6 0.73 0.11 0.16 Matches are distributed among these distances: 5 5 0.19 7 17 0.63 8 5 0.19 ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68 Consensus pattern (7 bp): TTATATT Left flanking sequence: Indices 20398903 -- 20399402 GGCGCCCATCCAACACCCATTTCTGTCGTTGATTTCCACGTGATGGCCGAGAATTTGTCAGCCAA TGATTGTTCGACTTTCGTCCTTCGCTCCTTTGCTATGCCATAGGATGCCGCCCCTTCACTAGCCC AGTAATAAACACACTCATTTCTTATAAATTCGCAAATATTCTCCGTATAGAAATCATTTTCCGGC TCCGATAAGGGATAGTCCAAGTGATCCACTCGAATGTTTCTATCTTTAGCTGTCTCGTATAATAT TTGATCTGGAATATTTAAAGTAGCCAGATGCTGTGTATGATCAGTTTTCAGTTTATCTGTGCAAA TGAAGTAGCGTACGACGATTCATACAATTGCGTACTCTTCAGCATCGTGGGAGAGTTCATCCGAT TCGATTAGCTCTGGAACTACCCAAGTCCTACGGTGATCATTGTGAGCATCGTACGCTTCGCTCCT AATGACATTGTATCCCAAGCAAGGCTGTTAGAAGTAGCATAATTG Right flanking sequence: Indices 20399444 -- 20399943 AATTATGTTTTAAATTACCCTAAAAGCAAGAAAAAACAGAAAAAGCAGCATGTATTACGTTTGTT GTGTTTATTGCACACTGTATTTTGACAAGATTTTCTAGACTGTCAAGTTTGTTTCTCAAAAAAAA ACAGAAAAGATAATGCTTAGACATAAAATATTGCGGAATAGGTGCACAACATGCAAGAAGAAAAG TGAAATTTTCAGCTGTTATTGTTTTTCTCCTGTCAGGCACAATAATATAATAATATTTTTAATTC TATAAGCATAATATTTACGAAATTCTCCCCAATCCAATCCATCTATATGCGTCATGCAGTTGTCA GGGCCATGTTTGCACCCCACTGCTACCAGACGATAAGACCACTACGGAAACTAGTCGGTCATCTC GTCGATTGCCGGATTCATTGCACTTTACTATCTGGACACTCCACGTGTTCTATTCAAATTCGGAC TGACACCCGCCCAGGGATTTCAGTTCACTGTCAGCGAAACTGAAA Found at i:20399478 original size:10 final size:10 Alignment explanation
Indices: 20399465--20399490 Score: 38 Period size: 9 Copynumber: 2.7 Consensus size: 10 20399455 AAATTACCCT 20399465 AAAAGCAAGA 1 AAAAGCAAGA * 20399475 AAAAAC-AGA 1 AAAAGCAAGA 20399484 AAAAGCA 1 AAAAGCA 20399491 GCATGTATTA Statistics Matches: 13, Mismatches: 2, Indels: 2 0.76 0.12 0.12 Matches are distributed among these distances: 9 8 0.62 10 5 0.38 ACGTcount: A:0.73, C:0.12, G:0.15, T:0.00 Consensus pattern (10 bp): AAAAGCAAGA Left flanking sequence: Indices 20398965 -- 20399464 CAATGATTGTTCGACTTTCGTCCTTCGCTCCTTTGCTATGCCATAGGATGCCGCCCCTTCACTAG CCCAGTAATAAACACACTCATTTCTTATAAATTCGCAAATATTCTCCGTATAGAAATCATTTTCC GGCTCCGATAAGGGATAGTCCAAGTGATCCACTCGAATGTTTCTATCTTTAGCTGTCTCGTATAA TATTTGATCTGGAATATTTAAAGTAGCCAGATGCTGTGTATGATCAGTTTTCAGTTTATCTGTGC AAATGAAGTAGCGTACGACGATTCATACAATTGCGTACTCTTCAGCATCGTGGGAGAGTTCATCC GATTCGATTAGCTCTGGAACTACCCAAGTCCTACGGTGATCATTGTGAGCATCGTACGCTTCGCT CCTAATGACATTGTATCCCAAGCAAGGCTGTTAGAAGTAGCATAATTGTTATATTTTATATTATA TTATATATTATATTTTTTTATATTAATTATGTTTTAAATTACCCT Right flanking sequence: Indices 20399491 -- 20399990 GCATGTATTACGTTTGTTGTGTTTATTGCACACTGTATTTTGACAAGATTTTCTAGACTGTCAAG TTTGTTTCTCAAAAAAAAACAGAAAAGATAATGCTTAGACATAAAATATTGCGGAATAGGTGCAC AACATGCAAGAAGAAAAGTGAAATTTTCAGCTGTTATTGTTTTTCTCCTGTCAGGCACAATAATA TAATAATATTTTTAATTCTATAAGCATAATATTTACGAAATTCTCCCCAATCCAATCCATCTATA TGCGTCATGCAGTTGTCAGGGCCATGTTTGCACCCCACTGCTACCAGACGATAAGACCACTACGG AAACTAGTCGGTCATCTCGTCGATTGCCGGATTCATTGCACTTTACTATCTGGACACTCCACGTG TTCTATTCAAATTCGGACTGACACCCGCCCAGGGATTTCAGTTCACTGTCAGCGAAACTGAAATT TGCACTGGATTCCATCCAAGGTTAATTCGATTTGCGGCACATGAA Found at i:20399692 original size:8 final size:8 Alignment explanation
Indices: 20399679--20399694 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 20399669 TGTCAGGCAC 20399679 AATAATAT 1 AATAATAT 20399687 AATAATAT 1 AATAATAT 20399695 TTTTAATTCT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38 Consensus pattern (8 bp): AATAATAT Left flanking sequence: Indices 20399179 -- 20399678 AAAGTAGCCAGATGCTGTGTATGATCAGTTTTCAGTTTATCTGTGCAAATGAAGTAGCGTACGAC GATTCATACAATTGCGTACTCTTCAGCATCGTGGGAGAGTTCATCCGATTCGATTAGCTCTGGAA CTACCCAAGTCCTACGGTGATCATTGTGAGCATCGTACGCTTCGCTCCTAATGACATTGTATCCC AAGCAAGGCTGTTAGAAGTAGCATAATTGTTATATTTTATATTATATTATATATTATATTTTTTT ATATTAATTATGTTTTAAATTACCCTAAAAGCAAGAAAAAACAGAAAAAGCAGCATGTATTACGT TTGTTGTGTTTATTGCACACTGTATTTTGACAAGATTTTCTAGACTGTCAAGTTTGTTTCTCAAA AAAAAACAGAAAAGATAATGCTTAGACATAAAATATTGCGGAATAGGTGCACAACATGCAAGAAG AAAAGTGAAATTTTCAGCTGTTATTGTTTTTCTCCTGTCAGGCAC Right flanking sequence: Indices 20399695 -- 20400194 TTTTAATTCTATAAGCATAATATTTACGAAATTCTCCCCAATCCAATCCATCTATATGCGTCATG CAGTTGTCAGGGCCATGTTTGCACCCCACTGCTACCAGACGATAAGACCACTACGGAAACTAGTC GGTCATCTCGTCGATTGCCGGATTCATTGCACTTTACTATCTGGACACTCCACGTGTTCTATTCA AATTCGGACTGACACCCGCCCAGGGATTTCAGTTCACTGTCAGCGAAACTGAAATTTGCACTGGA TTCCATCCAAGGTTAATTCGATTTGCGGCACATGAAGGGATCGTTTATCATTAAGATCGGACGAT GTTCTTTCTGAATGGTGTGATGTTAGGTTTTAGGATAGACAATACATGGTATGTTGGGACTAGTT AACACTGTTTTGGTTGATCAAGTTCTACGATTCGTTTGCTGGAGTGCTTAACAAGTAATTACTTC TTCTAATTTAGTTCGAGTAATCTATGAAGTTCTGTTTTAAACTAT Found at i:20400786 original size:9 final size:8 Alignment explanation
Indices: 20400772--20400790 Score: 29 Period size: 9 Copynumber: 2.2 Consensus size: 8 20400762 GGTGGAAAAC 20400772 ATTTCGCAA 1 ATTTCG-AA 20400781 ATTTCGAA 1 ATTTCGAA 20400789 AT 1 AT 20400791 CAGTTCAAAA Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 8 4 0.40 9 6 0.60 ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37 Consensus pattern (8 bp): ATTTCGAA Left flanking sequence: Indices 20400272 -- 20400771 GTGGTCGCACACACACACCGCATGGATTGGCCCCCTAGAAAAGAGGGGCCTGTCCGAGAACCCAG CTAAAGAGCACCCTGTAGATTACATAACCGCCCGTCAACCGAGACATATGTACATATATGATGTA TTTGCACAGATTTAGACATGCCCCGCCGCAGAAAAGGAAAGCCACCCAACTGAGTTGTTGTTGTC AATTGGCGGGCCTCCTCCATATAATTTGCTTTCGTTTTTATTGAATCTTGCCGGGGCCCCAAACA AAATCGGTGCGCCATGGCGACAAGTCCCACTTCCATAGCCATACCCATACCCATTCCTGATCTCA TAATGAATTTGACTGGCTGCCAACTGACACTCACTAACCCAATTGACTAAGTAACTAAGCGACCA GACGAGACGATTGGAGCCGACGGGATCCGAGTGCTCAGGCGATATATATATGTATGTACATATGT ATATAGCGGAAACAAGGCGCTAATGTTGAGGGACTGGTGGAAAAC Right flanking sequence: Indices 20400791 -- 20401290 CAGTTCAAAATCGCAGCTCGCTGGCAGCGCTCGTCGCGAATCGAAAAAGTCCAGTTCGCAAAATG TTTCGCAAATGCCTCGCCAGCCTGGCTTTGGCCCCAGTTGCCAGTCCCATTCCGCTGCCCAGGAT CACCCCGATCGCCAGCCAGCTTGTCCAGCGTCGCGCGTTCCACCAGGTTCCTCGCGAGAGTAGGC CACCCAAAATTCTGATCACAGGTCAGTTGCCGCGCCACGTGGATCTGCTAAATTTAACCGCGTCC AAGGCCGATCGGAACAAATTTATCATATTTTAGCATATAGTGGACACGTTTAACTGAAAGACATC CCACAGTTTATACATGCTTTTGAATATTTTTTGACATTTTTGGAAGTTTTACATCCCTTGTGAAC TTACAAGTTATAGTTATAGTGATGGTGTCAGCAAATAGAACAGCAAGAATATAATATAATATTGA AATGATAACTTTTTTACTTTAGTGTAAGATCTAAGTGCTGCGAAG Found at i:20401087 original size:10 final size:10 Alignment explanation
Indices: 20401069--20401088 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 20401059 TCGGAACAAA * 20401069 TTTATCATAT 1 TTTAGCATAT 20401079 TTTAGCATAT 1 TTTAGCATAT 20401089 AGTGGACACG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.30, C:0.10, G:0.05, T:0.55 Consensus pattern (10 bp): TTTAGCATAT Left flanking sequence: Indices 20400569 -- 20401068 GCCATACCCATACCCATTCCTGATCTCATAATGAATTTGACTGGCTGCCAACTGACACTCACTAA CCCAATTGACTAAGTAACTAAGCGACCAGACGAGACGATTGGAGCCGACGGGATCCGAGTGCTCA GGCGATATATATATGTATGTACATATGTATATAGCGGAAACAAGGCGCTAATGTTGAGGGACTGG TGGAAAACATTTCGCAAATTTCGAAATCAGTTCAAAATCGCAGCTCGCTGGCAGCGCTCGTCGCG AATCGAAAAAGTCCAGTTCGCAAAATGTTTCGCAAATGCCTCGCCAGCCTGGCTTTGGCCCCAGT TGCCAGTCCCATTCCGCTGCCCAGGATCACCCCGATCGCCAGCCAGCTTGTCCAGCGTCGCGCGT TCCACCAGGTTCCTCGCGAGAGTAGGCCACCCAAAATTCTGATCACAGGTCAGTTGCCGCGCCAC GTGGATCTGCTAAATTTAACCGCGTCCAAGGCCGATCGGAACAAA Right flanking sequence: Indices 20401089 -- 20401588 AGTGGACACGTTTAACTGAAAGACATCCCACAGTTTATACATGCTTTTGAATATTTTTTGACATT TTTGGAAGTTTTACATCCCTTGTGAACTTACAAGTTATAGTTATAGTGATGGTGTCAGCAAATAG AACAGCAAGAATATAATATAATATTGAAATGATAACTTTTTTACTTTAGTGTAAGATCTAAGTGC TGCGAAGCACTAGATACATTAAACAATCTATTCTATATAACTAGGATATATAAAGAAAGAAATGG TAATCTGGTGATTTTAGCTCCAAATATTATATGTAAATTCCCTATACCTGTGCATGGAAAAACTA ATTTTCCTATTTTAATTCGTTTATACACGTTTTATTTCTCAAAATGCTGGCCCGTTAAGTGTGAA GCCTGAAAGAATGCTACAATATGTATTGTAGATTCACTTTCAATAAAATCTGAGTGCAACAATCG TTTTGATTTCTTTCAGGTGGCTTGGGCCAGTTGGGCATCGAGTGC Found at i:20402785 original size:7 final size:7 Alignment explanation
Indices: 20402769--20402785 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 20402759 CAAGTCCTGC 20402769 TTTAACA 1 TTTAACA * 20402776 TTTCACA 1 TTTAACA 20402783 TTT 1 TTT 20402786 GTTATTTGTT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.29, C:0.18, G:0.00, T:0.53 Consensus pattern (7 bp): TTTAACA Left flanking sequence: Indices 20402269 -- 20402768 TTTCCAGTGATCCGCCGGGCGGCGGCACCACAGGTATTTAAGCACCGTACATTTCTGTGGAGACT CAAGCACATCAATCTGCGTGGAAATATCTGCGAGATACTCTTCCCGCTGAAGTCATGTCGTCGAG CGCACTTCAAGCTTTATTTAATCCAATTTCGTATCATAAATGCTCCAATTGAAGATAGTTTATGA TAATCAAAGAGCATGACAATGGCCATAATTCGTACAAAATGCAGAGGGTTTTGTTGGGGAGCCGC AAACCTGGTGACCCATATTAACTTATCTTTGATTGAACTGATTAACTTAAAGATTGTCTAAGTCT CAACTACTCTGCATTGCTTTCACTCATGAATGGAATAATAATGCTTATTACACTTTGGGGAAAGC TAATTTGTTTTAATGCCATTGCATTCTTATGAAATCACGTATACGCACCGTGAATCGAATCATTT CTGCAGCTTTATACAAATTTATAATGTACCAAAAACAAGTCCTGC Right flanking sequence: Indices 20402786 -- 20403285 GTTATTTGTTTCAACTTTTAGATTACGCTGTGGCCGTGTTCCATGAAGCGCTGCGCAATGGAAAG TACACCTGCTACCTGCGTCCTGACACAAGACTGCCCATGATGTACATTGAAGATTGTTTGCGGTG AGTAATAAGTGCATTGTAACAAACTATTTCTTTGTTACTAATGACCCATCTAACTAGGGCTCTCC TCGAGTTCATGCGTGCTCCCAACGAACAGCTGAAGCGCCGCGTCTACAACGTGACCGCCATGTCC TTCACTCCCGAGGAGCTGTTCGCCCAGCTGGGCAAGCACGTGCCCAATCTGCACGTGACCTACAA GCCAGATAGCCGCCAGTTGATCGCAGACGCCTGGCCGCAGGTATTCGATGACTCCGATGCGCGGC GCGACTGGCACTGGCAGCACAAGTACGACCTGTCCAACCTGGTGGACTTCATGATCAAGGACGTG CAGGATAACTACATTAATGTTCAGCCGGAGCAGCAGACTCTGCAG Found at i:20402792 original size:7 final size:7 Alignment explanation
Indices: 20402782--20402795 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 20402772 AACATTTCAC 20402782 ATTTGTT 1 ATTTGTT 20402789 ATTTGTT 1 ATTTGTT 20402796 TCAACTTTTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.00, G:0.14, T:0.71 Consensus pattern (7 bp): ATTTGTT Left flanking sequence: Indices 20402282 -- 20402781 GCCGGGCGGCGGCACCACAGGTATTTAAGCACCGTACATTTCTGTGGAGACTCAAGCACATCAAT CTGCGTGGAAATATCTGCGAGATACTCTTCCCGCTGAAGTCATGTCGTCGAGCGCACTTCAAGCT TTATTTAATCCAATTTCGTATCATAAATGCTCCAATTGAAGATAGTTTATGATAATCAAAGAGCA TGACAATGGCCATAATTCGTACAAAATGCAGAGGGTTTTGTTGGGGAGCCGCAAACCTGGTGACC CATATTAACTTATCTTTGATTGAACTGATTAACTTAAAGATTGTCTAAGTCTCAACTACTCTGCA TTGCTTTCACTCATGAATGGAATAATAATGCTTATTACACTTTGGGGAAAGCTAATTTGTTTTAA TGCCATTGCATTCTTATGAAATCACGTATACGCACCGTGAATCGAATCATTTCTGCAGCTTTATA CAAATTTATAATGTACCAAAAACAAGTCCTGCTTTAACATTTCAC Right flanking sequence: Indices 20402796 -- 20403295 TCAACTTTTAGATTACGCTGTGGCCGTGTTCCATGAAGCGCTGCGCAATGGAAAGTACACCTGCT ACCTGCGTCCTGACACAAGACTGCCCATGATGTACATTGAAGATTGTTTGCGGTGAGTAATAAGT GCATTGTAACAAACTATTTCTTTGTTACTAATGACCCATCTAACTAGGGCTCTCCTCGAGTTCAT GCGTGCTCCCAACGAACAGCTGAAGCGCCGCGTCTACAACGTGACCGCCATGTCCTTCACTCCCG AGGAGCTGTTCGCCCAGCTGGGCAAGCACGTGCCCAATCTGCACGTGACCTACAAGCCAGATAGC CGCCAGTTGATCGCAGACGCCTGGCCGCAGGTATTCGATGACTCCGATGCGCGGCGCGACTGGCA CTGGCAGCACAAGTACGACCTGTCCAACCTGGTGGACTTCATGATCAAGGACGTGCAGGATAACT ACATTAATGTTCAGCCGGAGCAGCAGACTCTGCAGATCTAAGACG Found at i:20404391 original size:7 final size:7 Alignment explanation
Indices: 20404379--20404393 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 20404369 AGTACAGTTT 20404379 ATGTTCG 1 ATGTTCG 20404386 ATGTTCG 1 ATGTTCG 20404393 A 1 A 20404394 CTTAGCTGTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.20, C:0.13, G:0.27, T:0.40 Consensus pattern (7 bp): ATGTTCG Left flanking sequence: Indices 20403879 -- 20404378 CTTTCGCGTTTGCTGTTTGGATCTTCCACAAAGTGCTCTTTAAAAGTTGGCTGACTTCATTAACT TAAACTTCGAATAAAATAGAAAAAATAAAGTATATAAAAAAAATTTAAGTATAACAGAATTTATA TAAAGATCGGTGGTAGCTGTTAAGTTTATTGCAAATATATGTGAGTGTAAAAATTGATACAAAAG ATATAAGCACTCACCGCGGTCTTAAGCTACTAAGTCATCAATATACCTAAAGCATATGTTGATAA CGATTTGAACTAATGGTAAAGTATACCTTAGAAATAAATTTACGACTATGGTTGCGTATCAGCCA ACTTCACATATTAAATTCACTTTGTGAAGGCTCCCAGCAATCGCTCCAGGCTGATTGAACATTTC ACTTAACATATATTGCTTGCTTTTTTGTGATTGCAATGTTTCGCAGGTCTAACTATTACTTTTTG AAATTAATTACGTATTTCAATTCTTTAGGTAGTTAAGTACAGTTT Right flanking sequence: Indices 20404394 -- 20404893 CTTAGCTGTTGTTTGTACAATAGTTCGTGAGTTTAACAATTTATACAGAATACTTATTGGCTGAG TCGTTAGCTGATTGTTTTTTTTTTTTACAAAATTTGAATTTTTGGTATATGGTAGGTATGTGCAT TGCGGATATTTTCAATTCAATTGCTCCTTTGCGTTAATTTGCTTTCTGAGTGATATGCGAACATT TTTCGATACATTGTCGGCTGTTTAGCAAATAAAGAGAGACGCGTCGCTCGGTGAACTGTTGCATG TGTTTCTTGTGCGCTTTTCTCAGCTACAGTACATGTTTTGGGTTATATATGTACATTTTGAGTTT TGTGTGAACGAGGGCCCCTAAATCATGTGCGACATCATGCAACGACTCACATCACGGTTGGCGCG ATGCAAATGACCTTGATAATGCTGATGAATGCGCTGATATTGATGTGGCTGCTGTGGATGTTGCT GTTGCTCTTGATGTTGCTGCTGCTGCGCTGGAAAACTCGTCTCCG Found at i:20405025 original size:10 final size:10 Alignment explanation
Indices: 20405010--20405029 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 20405000 ATAAACCGAT * 20405010 CATTAAGTTA 1 CATTAACTTA 20405020 CATTAACTTA 1 CATTAACTTA 20405030 TATAAAATAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.40, C:0.15, G:0.05, T:0.40 Consensus pattern (10 bp): CATTAACTTA Left flanking sequence: Indices 20404510 -- 20405009 GTAGGTATGTGCATTGCGGATATTTTCAATTCAATTGCTCCTTTGCGTTAATTTGCTTTCTGAGT GATATGCGAACATTTTTCGATACATTGTCGGCTGTTTAGCAAATAAAGAGAGACGCGTCGCTCGG TGAACTGTTGCATGTGTTTCTTGTGCGCTTTTCTCAGCTACAGTACATGTTTTGGGTTATATATG TACATTTTGAGTTTTGTGTGAACGAGGGCCCCTAAATCATGTGCGACATCATGCAACGACTCACA TCACGGTTGGCGCGATGCAAATGACCTTGATAATGCTGATGAATGCGCTGATATTGATGTGGCTG CTGTGGATGTTGCTGTTGCTCTTGATGTTGCTGCTGCTGCGCTGGAAAACTCGTCTCCGATTCCA TCATCATCATGCCGCCGGTGGCCTGCATCTCGTAATCCATCAAAGAGGCCTGCGTTCCAATTATT TGTGTGGCAGGCAAGGAAAAGAAATCTGCAAGGCAATAAACCGAT Right flanking sequence: Indices 20405030 -- 20405529 TATAAAATAATTTACAATTTATTATAATTGTATGTACAAACTGAAGTCTATTCCGATTTTTCTCA GTGCAACGGCAATGCAACGCAACACGTTGACACTATCGATGCTTGGCCCAATTACCGATCGTTTA TTTATAACCAATTCGGAGCAGAGCAGTGTGTTGTCATTTCTTATCTACGAGTTAGTTTCTTTTTT TCTGCTTTTTGTTTGTGCTGATAACCTTATCAACGCAATCGGAAACTATAAGGTAACGAAGGCAA AACGGAGTGCACAGATTAACAACAACTAATTAAGTGTAGTCATAGTTGCAAAAATACATATGTAT ATTTATTCCAATAGAAAACATTTAAAATTGTATTTCTATTATTTTGTACCCCTTTTAAAAATATT AATATAGATCAAAAAAATTGAGATATATATTTAAGTAAATCGTGGACAAAACTAAATGAAATATT CGTACATATCATTGAAATCACTTAAAAACATTTAAGAAGCGTTTA Found at i:20405809 original size:8 final size:8 Alignment explanation
Indices: 20405793--20405810 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 20405783 AAACACACCG 20405793 ATATACAT 1 ATATACAT * 20405801 ATATGCAT 1 ATATACAT 20405809 AT 1 AT 20405811 GTATGTCTAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.44, C:0.11, G:0.06, T:0.39 Consensus pattern (8 bp): ATATACAT Left flanking sequence: Indices 20405293 -- 20405792 GGAGTGCACAGATTAACAACAACTAATTAAGTGTAGTCATAGTTGCAAAAATACATATGTATATT TATTCCAATAGAAAACATTTAAAATTGTATTTCTATTATTTTGTACCCCTTTTAAAAATATTAAT ATAGATCAAAAAAATTGAGATATATATTTAAGTAAATCGTGGACAAAACTAAATGAAATATTCGT ACATATCATTGAAATCACTTAAAAACATTTAAGAAGCGTTTATACCCTCAGAAAGAGTATAGATT ATTGATTCACTCCCGCAGATATACACATTTCTTTTACCGGCTGTATATATTTACGCCCACACTGC CTTCCCCCTTTGTTTTCTTCTATTGTTGGAACACTTTTGCGAATGCAGATTGATTAAACTGGCGG TGTAAGAAGAATCGTAACACTCTGTTGACCCAGTGTACATAGTCATCTCCGCAGTACCTCCAGTT AATCCCCACTACTTGTGTGTTTTGTTTAGTAGGCCAAACACACCG Right flanking sequence: Indices 20405811 -- 20406310 GTATGTCTATAAAGACTGAGTCAAGCCGGTTTTTCTTTGCTAAATTTAAGCGGCTGTCAAGTGCT ATCGTTTCGAGTCCGGTACCCTCTGTATGCCACAGATAGTCCGGATCCCACCGAATAACTGAACA GTGATAACACAGGTCGCTGGGAGAGCCAATGGGAGAAGAAATGGGGCCGCAAGGTCAGAGATAAT TGTGTAAATTTACAAGTTTTACGACACTTTCACGCAACACCAATTAAATGCGCGGGCATAAGAGC CAAGGTCGAGAGATTATAAACAAAATTACAGCTTAAGTCGTCTGGTGTGTTCCGGTTTTTAAATT CATACCAACAAAAATGCCTTCAATACTCATTTAAAGTTAAATTAATATCATATTTGGTTCAAGTA TAATTTGAATTTCATTGCAAGTGTTAAATTTAAGTTCAAAATGGTTTGAGACACTAAAAAATGCA ACCATTACTCTTAAAGGATTGAGTATAACATAATAATATATTTCT Found at i:20406347 original size:7 final size:7 Alignment explanation
Indices: 20406335--20406349 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 20406325 ACTAATGAGG 20406335 ATATTTA 1 ATATTTA 20406342 ATATTTA 1 ATATTTA 20406349 A 1 A 20406350 AGGCTGCTCG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53 Consensus pattern (7 bp): ATATTTA Left flanking sequence: Indices 20405835 -- 20406334 GCCGGTTTTTCTTTGCTAAATTTAAGCGGCTGTCAAGTGCTATCGTTTCGAGTCCGGTACCCTCT GTATGCCACAGATAGTCCGGATCCCACCGAATAACTGAACAGTGATAACACAGGTCGCTGGGAGA GCCAATGGGAGAAGAAATGGGGCCGCAAGGTCAGAGATAATTGTGTAAATTTACAAGTTTTACGA CACTTTCACGCAACACCAATTAAATGCGCGGGCATAAGAGCCAAGGTCGAGAGATTATAAACAAA ATTACAGCTTAAGTCGTCTGGTGTGTTCCGGTTTTTAAATTCATACCAACAAAAATGCCTTCAAT ACTCATTTAAAGTTAAATTAATATCATATTTGGTTCAAGTATAATTTGAATTTCATTGCAAGTGT TAAATTTAAGTTCAAAATGGTTTGAGACACTAAAAAATGCAACCATTACTCTTAAAGGATTGAGT ATAACATAATAATATATTTCTGAGTGTTTTCTGAAACTAATGAGG Right flanking sequence: Indices 20406350 -- 20406849 AGGCTGCTCGACAACAAATTTATTTATTGGAATTATTGCATGTGCAATTGCTAAGTAAGCCTAAT ATAAAACTGCCTTAAACAATTTAATAATTAAATAACTAAGCTTGCATTTTTGAGCAGCGATACTC ACCATTGCAGTACTGGGCGGCCAAGTCAGACTCGTCGTAGCGACATCTCTTGGTGTACACCGGTT GGTCCGTGTCCAAATCCCCGACAGGATTGTGACCGGGATTCAGGCGCTTCTTGCAGCGCAGGACT TCCGGAGGCAGGACGACCGGCATCGGTTGTGCCGCGAGGTTATTGCCATCATTGTTGTTGTTGTT GTTGTTGGCGTCGGTCATGAAGGTGACGGCGCGTGGATTGAACGGATCCATCGAAGGACGCAGCG CTCCAGTTTCGAAAGTGGCGGCCGCCGACGACGACGGATCACCATGTGCCCAGCACTCGAAGTTC GTCAAAACCATCGCGCGCCAGCTGCAGTGGAATTTCCCCAAAAAA Found at i:20406448 original size:8 final size:8 Alignment explanation
Indices: 20406426--20406453 Score: 35 Period size: 8 Copynumber: 3.5 Consensus size: 8 20406416 TAAAACTGCC * 20406426 TTAAACAA 1 TTAAATAA * 20406434 TTTAATAA 1 TTAAATAA 20406442 TTAAATAA 1 TTAAATAA * 20406450 CTAA 1 TTAA 20406454 GCTTGCATTT Statistics Matches: 16, Mismatches: 4, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 8 16 1.00 ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36 Consensus pattern (8 bp): TTAAATAA Left flanking sequence: Indices 20405926 -- 20406425 CCGAATAACTGAACAGTGATAACACAGGTCGCTGGGAGAGCCAATGGGAGAAGAAATGGGGCCGC AAGGTCAGAGATAATTGTGTAAATTTACAAGTTTTACGACACTTTCACGCAACACCAATTAAATG CGCGGGCATAAGAGCCAAGGTCGAGAGATTATAAACAAAATTACAGCTTAAGTCGTCTGGTGTGT TCCGGTTTTTAAATTCATACCAACAAAAATGCCTTCAATACTCATTTAAAGTTAAATTAATATCA TATTTGGTTCAAGTATAATTTGAATTTCATTGCAAGTGTTAAATTTAAGTTCAAAATGGTTTGAG ACACTAAAAAATGCAACCATTACTCTTAAAGGATTGAGTATAACATAATAATATATTTCTGAGTG TTTTCTGAAACTAATGAGGATATTTAATATTTAAAGGCTGCTCGACAACAAATTTATTTATTGGA ATTATTGCATGTGCAATTGCTAAGTAAGCCTAATATAAAACTGCC Right flanking sequence: Indices 20406454 -- 20406953 GCTTGCATTTTTGAGCAGCGATACTCACCATTGCAGTACTGGGCGGCCAAGTCAGACTCGTCGTA GCGACATCTCTTGGTGTACACCGGTTGGTCCGTGTCCAAATCCCCGACAGGATTGTGACCGGGAT TCAGGCGCTTCTTGCAGCGCAGGACTTCCGGAGGCAGGACGACCGGCATCGGTTGTGCCGCGAGG TTATTGCCATCATTGTTGTTGTTGTTGTTGTTGGCGTCGGTCATGAAGGTGACGGCGCGTGGATT GAACGGATCCATCGAAGGACGCAGCGCTCCAGTTTCGAAAGTGGCGGCCGCCGACGACGACGGAT CACCATGTGCCCAGCACTCGAAGTTCGTCAAAACCATCGCGCGCCAGCTGCAGTGGAATTTCCCC AAAAAAACCGAAAAGCAAGTACAGTAAATTCGGAAAAAACGCTCCTCTGCGTCCGTACTGTACTG TACGAAATCGTGCGGCGAACTGCAGGCGCGTATTTTTCCCCTAAT Found at i:20407359 original size:10 final size:10 Alignment explanation
Indices: 20407340--20407365 Score: 38 Period size: 10 Copynumber: 2.7 Consensus size: 10 20407330 CATGGAAACT 20407340 TATA-ATTTA 1 TATATATTTA 20407349 TATATATTTA 1 TATATATTTA * 20407359 TATTTAT 1 TATATAT 20407366 AATTATCGAA Statistics Matches: 15, Mismatches: 1, Indels: 1 0.88 0.06 0.06 Matches are distributed among these distances: 9 4 0.27 10 11 0.73 ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62 Consensus pattern (10 bp): TATATATTTA Left flanking sequence: Indices 20406840 -- 20407339 CCCCAAAAAAACCGAAAAGCAAGTACAGTAAATTCGGAAAAAACGCTCCTCTGCGTCCGTACTGT ACTGTACGAAATCGTGCGGCGAACTGCAGGCGCGTATTTTTCCCCTAATTGAAATCGTATTTGTA TGCAGTATGGATTTTGATGGCTCTGTCGGCTTAATAAGCGCCGAAAATACGCAGCAGTTGCTAAA ATGGATGAAATAATTCAATTAACACACGCAAGCGGGGCGCGCGAGCATTCGGCCGAAATGCGACT GTAAATGCGGTGACGGCAACTGTTAAAAATAAACCAATAAGCAAGTTTTACATTTTGCCGCGTGC GCCTTTCGATTCACGATTGCTCTTTTGTTTTCCTTTCGCTCCAGTGTGACCACACTGCTGGTGTC GCAATAAGGCGTGCGACCCTGGAGAAAAATACCGAAGAAGTTGCGAAAAGACAGCTGTGGTTGCA AAAATAGTGCAGATCTTATGAATCTCATTGGAAGTCATGGAAACT Right flanking sequence: Indices 20407366 -- 20407865 AATTATCGAAAATCGCGAAACAGCGTACAATATGTTACTTGAACAAATATGACACTTCATTTTGT ATACCTAAAGAAATAGCTTCAATACTTCTCTTTTATTTTGATATAATTTTAACTTTTTACTCAAT TAAAATGAATTAAAAAATGAGAATTTAGTTGAAAATATTTCGATAGCAACGATACCAACGATTAA TCGACTAGTCGCAGTATTTTCTGGTATATTTTGAATGCTGGCACGGTACTACCACTTTATCATGT GATTTGTGATTTGTCAAATATTTCTGATAACCGAATGGCAGACCAAAGCAAAACTAGAAATTGAG AGAAATTGCTGATTTTTCAATTAAGCTGCATTCTATTTAACTGAAAAGATGTCGACCAAGAACAA GAAAGCCGCCGGAGGCAACGGAGTTGCGCCGAAACAAACCCGCCAGCAGTCGCACGTATGTAACA TGACGGCTCCGATTGCCGGCTAGCTAATCCCTTGTTTATTTTGGA Found at i:20407554 original size:9 final size:9 Alignment explanation
Indices: 20407536--20407557 Score: 37 Period size: 9 Copynumber: 2.4 Consensus size: 9 20407526 GAAAATATTT * 20407536 CGATAGCAA 1 CGATACCAA 20407545 CGATACCAA 1 CGATACCAA 20407554 CGAT 1 CGAT 20407558 TAATCGACTA Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.41, C:0.27, G:0.18, T:0.14 Consensus pattern (9 bp): CGATACCAA Left flanking sequence: Indices 20407036 -- 20407535 TGGATGAAATAATTCAATTAACACACGCAAGCGGGGCGCGCGAGCATTCGGCCGAAATGCGACTG TAAATGCGGTGACGGCAACTGTTAAAAATAAACCAATAAGCAAGTTTTACATTTTGCCGCGTGCG CCTTTCGATTCACGATTGCTCTTTTGTTTTCCTTTCGCTCCAGTGTGACCACACTGCTGGTGTCG CAATAAGGCGTGCGACCCTGGAGAAAAATACCGAAGAAGTTGCGAAAAGACAGCTGTGGTTGCAA AAATAGTGCAGATCTTATGAATCTCATTGGAAGTCATGGAAACTTATAATTTATATATATTTATA TTTATAATTATCGAAAATCGCGAAACAGCGTACAATATGTTACTTGAACAAATATGACACTTCAT TTTGTATACCTAAAGAAATAGCTTCAATACTTCTCTTTTATTTTGATATAATTTTAACTTTTTAC TCAATTAAAATGAATTAAAAAATGAGAATTTAGTTGAAAATATTT Right flanking sequence: Indices 20407558 -- 20408057 TAATCGACTAGTCGCAGTATTTTCTGGTATATTTTGAATGCTGGCACGGTACTACCACTTTATCA TGTGATTTGTGATTTGTCAAATATTTCTGATAACCGAATGGCAGACCAAAGCAAAACTAGAAATT GAGAGAAATTGCTGATTTTTCAATTAAGCTGCATTCTATTTAACTGAAAAGATGTCGACCAAGAA CAAGAAAGCCGCCGGAGGCAACGGAGTTGCGCCGAAACAAACCCGCCAGCAGTCGCACGTATGTA ACATGACGGCTCCGATTGCCGGCTAGCTAATCCCTTGTTTATTTTGGATGCCCAGGACTCGCAGG ACTACAGCTCCTTCAAGACAGTGCTCTTCTACTGCATGCTTATCGTTTTCCTGCCCGTGCTGACC TTCTTTGTGCTGAAGGGCTTCGTTCTGGACCAGTTCCTCGACATTTCCGAAGTCAAAGTGAACAT AGCATCCGCCGTGGGAGCGGTCGTTGCATTGCACATCGCCCTGGG Found at i:20407635 original size:7 final size:7 Alignment explanation
Indices: 20407623--20407639 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 20407613 CACTTTATCA 20407623 TGTGATT 1 TGTGATT 20407630 TGTGATT 1 TGTGATT 20407637 TGT 1 TGT 20407640 CAAATATTTC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.12, C:0.00, G:0.29, T:0.59 Consensus pattern (7 bp): TGTGATT Left flanking sequence: Indices 20407123 -- 20407622 TAAAAATAAACCAATAAGCAAGTTTTACATTTTGCCGCGTGCGCCTTTCGATTCACGATTGCTCT TTTGTTTTCCTTTCGCTCCAGTGTGACCACACTGCTGGTGTCGCAATAAGGCGTGCGACCCTGGA GAAAAATACCGAAGAAGTTGCGAAAAGACAGCTGTGGTTGCAAAAATAGTGCAGATCTTATGAAT CTCATTGGAAGTCATGGAAACTTATAATTTATATATATTTATATTTATAATTATCGAAAATCGCG AAACAGCGTACAATATGTTACTTGAACAAATATGACACTTCATTTTGTATACCTAAAGAAATAGC TTCAATACTTCTCTTTTATTTTGATATAATTTTAACTTTTTACTCAATTAAAATGAATTAAAAAA TGAGAATTTAGTTGAAAATATTTCGATAGCAACGATACCAACGATTAATCGACTAGTCGCAGTAT TTTCTGGTATATTTTGAATGCTGGCACGGTACTACCACTTTATCA Right flanking sequence: Indices 20407640 -- 20408139 CAAATATTTCTGATAACCGAATGGCAGACCAAAGCAAAACTAGAAATTGAGAGAAATTGCTGATT TTTCAATTAAGCTGCATTCTATTTAACTGAAAAGATGTCGACCAAGAACAAGAAAGCCGCCGGAG GCAACGGAGTTGCGCCGAAACAAACCCGCCAGCAGTCGCACGTATGTAACATGACGGCTCCGATT GCCGGCTAGCTAATCCCTTGTTTATTTTGGATGCCCAGGACTCGCAGGACTACAGCTCCTTCAAG ACAGTGCTCTTCTACTGCATGCTTATCGTTTTCCTGCCCGTGCTGACCTTCTTTGTGCTGAAGGG CTTCGTTCTGGACCAGTTCCTCGACATTTCCGAAGTCAAAGTGAACATAGCATCCGCCGTGGGAG CGGTCGTTGCATTGCACATCGCCCTGGGACTCTATATATACAGGGCCTACTTTGGGGCACCCGGT TCCAAGGGCTCCAAAACGGACTAATCCTCATCTACCCCGGACTGT Found at i:20410389 original size:7 final size:7 Alignment explanation
Indices: 20410373--20410390 Score: 29 Period size: 7 Copynumber: 2.6 Consensus size: 7 20410363 CTTCCGTGTG * 20410373 AATCACA 1 AATGACA 20410380 AATGACA 1 AATGACA 20410387 AATG 1 AATG 20410391 TTGTATCTAC Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.56, C:0.17, G:0.11, T:0.17 Consensus pattern (7 bp): AATGACA Left flanking sequence: Indices 20409873 -- 20410372 GTGGGGACCCAAGGACTCCATCTATGGAGCACGACACCTGGCCAAAAAGTGGCACCATGAAGGAA AACTTGATAGAATAGATATGCTGGTGCTCCTGGATCTGTTGGGAGCCCCCGATCCGGCATTCTAC AGCTTCTTCGAAAACACCGAGTCCTGGTACATGCGTATCCAGTCCGTGGAGACACGTCTTGCCAA GTTGCAGCTCCTGGAGCGCTATGCCAGCAGTGGAGTTGCCCAGCGCGACCCCACCCGCTACTTCC AGTCGCAGGCCATGCGATCCTCTTTCATCGAGGACGATCACATACCCTTCCTGCGGCGAAATGTG CCGATCTTGCACCTCATTCCGGTGCCCTTTCCCAGTGTATGGCATACGCCCGACGATAACGCCAG CGTGATCGATTATGCGACGACGGACAACCTGGCACTGATTATACGGCTCTTCGCTTTGGAGTATC TGCTGGCCGGAACCGAGGCCAAGTAGTCAAGTGGGCTTCCGTGTG Right flanking sequence: Indices 20410391 -- 20410890 TTGTATCTACTTCAGGCCTTATCTAATTGACCTGTTCCAGTATCGGAGCATTGTTGGAAGTTCTT ATGCCCGCCGGAAGATCCCTAGAAAACCTTGTTGTAACCGACTGCGTGCTTTAAAACTAATAAGG GAAGATCTGCAACACGCGTACTCCAAATATTTTTATACACATGTATTTATAGAAAATGCTTAGCT AATGACACGTCAGGTTTATATATTTTTTGTAATCTTTCGGTTGTAAATTGTTTCACTTATGTAAG TTAACTAAGTTAACCGGACTGATTGTCCGCACACCAGCACCGGTCAAATTGCTGACCAAGCATTT GGCCGGAAGCTCATGCATAGCCGGCAGAAGCTCTGCGCATTGGCAGAGGCCGCTATGATGTTTTT CCCTTTGTTAGCTTATAGTCAGTTTGATTTTGTATTCAATAAAGAGCGCATCGCGCCTTCAATCA ACTCCAGCTACTGCTGTTATCATTGAATTGGTTGGCTAGCCTTAA Found at i:20410661 original size:9 final size:9 Alignment explanation
Indices: 20410647--20410664 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 20410637 TTCACTTATG 20410647 TAAGTTAAC 1 TAAGTTAAC 20410656 TAAGTTAAC 1 TAAGTTAAC 20410665 CGGACTGATT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.44, C:0.11, G:0.11, T:0.33 Consensus pattern (9 bp): TAAGTTAAC Left flanking sequence: Indices 20410147 -- 20410646 CGATCCTCTTTCATCGAGGACGATCACATACCCTTCCTGCGGCGAAATGTGCCGATCTTGCACCT CATTCCGGTGCCCTTTCCCAGTGTATGGCATACGCCCGACGATAACGCCAGCGTGATCGATTATG CGACGACGGACAACCTGGCACTGATTATACGGCTCTTCGCTTTGGAGTATCTGCTGGCCGGAACC GAGGCCAAGTAGTCAAGTGGGCTTCCGTGTGAATCACAAATGACAAATGTTGTATCTACTTCAGG CCTTATCTAATTGACCTGTTCCAGTATCGGAGCATTGTTGGAAGTTCTTATGCCCGCCGGAAGAT CCCTAGAAAACCTTGTTGTAACCGACTGCGTGCTTTAAAACTAATAAGGGAAGATCTGCAACACG CGTACTCCAAATATTTTTATACACATGTATTTATAGAAAATGCTTAGCTAATGACACGTCAGGTT TATATATTTTTTGTAATCTTTCGGTTGTAAATTGTTTCACTTATG Right flanking sequence: Indices 20410665 -- 20411164 CGGACTGATTGTCCGCACACCAGCACCGGTCAAATTGCTGACCAAGCATTTGGCCGGAAGCTCAT GCATAGCCGGCAGAAGCTCTGCGCATTGGCAGAGGCCGCTATGATGTTTTTCCCTTTGTTAGCTT ATAGTCAGTTTGATTTTGTATTCAATAAAGAGCGCATCGCGCCTTCAATCAACTCCAGCTACTGC TGTTATCATTGAATTGGTTGGCTAGCCTTAAGGGCAGTCAACAACGGAGAGACGTTCTCCCACCA TATCTCCCAATCTAGGAGAAGAGGTCTGCGGCAACCGCCCTGCCTCCCAGTGACAGAGGAACCCC CCGTTACCTGCAACCTACGCCGGAGACCGCGGCGAGGGACCTGCACCTTATATTTAATTAATTGG CACCCAACTCCAGGAACCCACACCACTACCCTGAATCATGTAAGTGGGATTCTCAACTTAAACAC TACTCCAAACTGCGTCTAGAATTTTAAAATATTTGGGATGTTTGT Found at i:20412122 original size:7 final size:7 Alignment explanation
Indices: 20412110--20412123 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 20412100 ACGTCTCCTG 20412110 GCGGCAA 1 GCGGCAA 20412117 GCGGCAA 1 GCGGCAA 20412124 ATGCCGCTTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.29, G:0.43, T:0.00 Consensus pattern (7 bp): GCGGCAA Left flanking sequence: Indices 20411610 -- 20412109 TGCCTTCAAAGCGGCGACTCAGCCCCCGCGACCCCCTTGCCGTACTGTTTGGCCCCACGGGCACA ACGGCCTGAGTATTCACATACATAGCTACCCATGAGCGAGTCATTCCGACAATATAGGAATTCTA AAAAGTGCGCTAGCGACTCAGAGTCCGAAAGCGACGATTCGACAGAAAACTCTGTACGTAAAAAC ACCCCAACTAACGCATTCACTGCATATAAAATGTCCCTCGAAACGGAACAAATTAAAGCTCTCAT AAGGGCATTACAAGAGCAAGCCTTAGAGAGTCAACGCAGGGAGGCTGACTTGCGTAAAACAATTC AATATCTGGCCGGCCAGGTCGCGGCCATACAGATTGCCCCTGCCCGGGCAGAAGCTCCCCCAATC AAGGTTTACAGACCAGTAGAAATCACCGGACTGGTCCCTTGTGGGGAAACATTGGATGCCGTTAA ATGTCTTCCAGACTTTATGGGGACACAGGAGACATACGTCTCCTG Right flanking sequence: Indices 20412124 -- 20412623 ATGCCGCTTACCATATGTTCAGGAAATATGAGGATAGTTCGCGGCACTATCAAGCTGTGGTCATC ATCAGGAGCAAAGTTAAAGGCCCTGCTGATGCAGTTCTGTCGTCCTTTGGGACTATACTGAATTT CGATGCGATCATAAGTCGCCTCGATTTCACGTATAGTGACAAACGCCCGATACACGTTATCGAGC AGGAGCTAGGCACCCTCAGACAGGGAAGCCTGACGCTCCTCCAGTATTATGATGAGGTCGAGAAA AAACTCACCTTACTCACCAATAAGGCGACTATGTCTTATGAAGCGTCGGCAGCAACGGTGCTGTG TGAGAAGTTCCGAGATGATGCTTTGAGAGTTTTTGTCTCGGGGCTCAGGCGCAACCTCACAGACG TGCTATTCGCGGCAAAGCCTAAGGACATGCCGTCAGCGCTCGCCCTGGCGCAGGAAGTAGAGTCC AATCATGAGCGGTACACTTTTGCAACTTCATTTGCACGAAGCCAA Found at i:20416274 original size:9 final size:9 Alignment explanation
Indices: 20416257--20416274 Score: 29 Period size: 9 Copynumber: 2.0 Consensus size: 9 20416247 GCCACTTGGC * 20416257 ATATTTTTT 1 ATATATTTT 20416266 ATATATTTT 1 ATATATTTT 20416275 CGCTATTATT Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 8 1.00 ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72 Consensus pattern (9 bp): ATATATTTT Left flanking sequence: Indices 20415757 -- 20416256 ATGCCTAAAAATCGACAAAGGCATAAGTGACACAGTGGAATTGGTCTTGCTGGCCACAGCCAGAT ATAACATGTCCATCCACTCTGTCATCAATAAAAAACCGGCCGAAGTCATGCGGGCAGATCCGGAC GATCCACATACCGATGTCCAAGAAAAAATCAAAAACGCCCAGATTTTGACAAGAAAACGAGAGAA CGCTTCTCGGCAGAACAGAGTGTTCCAGGTCGGCGACAAAGTCCTAGTAAAGTCAAACAGACGAT TAGGCAACAAACTTACTCCTTTATGTGAGGAGAAGACCATCGAGGCAGACTTGGGGACCACAGTC CTTATTAAAGGGAGGGTGGTCCATAAAGACAACCTCAAGTGACCCAAGCAGAGCCTAGCCGCGGC TCCCTCGGAGGCACACTTTTATTCCTCCAATTTGTAGCCACTCGGCATAAGTTTTTTCATTGTTT TTATAGCCGCTTGGCATAAGTTTTTTATTTTTTTAGCCACTTGGC Right flanking sequence: Indices 20416275 -- 20416774 CGCTATTATTGGTGGTGGGCAACTCCATTCCGAACAAGTAATAATTTATCACACACGTTACAGGT CGCTCCCAACCCTTCTTCTTTGTTTCCTGGCCACGACATCGGCCCACATTACTGACTATTCCCGA GCGAATTACATTCCCGTCATTGACGGTAAAGTCTTAGTCTGGGAGGAATTCGCCTATGTCAGACA CTCGGCTAACCTCTCCGAGTATAGGCGGGTAATTGACGAAACCGACAGCATGCTCGATATGTTCC CCCAGTCCCATATGAAGAAACTCCTGAGCGTTGATATCGCTCACCTCCGTGACATGCTTGATTCT TTGAGCATCCATCACAGAGTGGCAAGGAGCCTAGACTTCTTGGGAACTGCGTTAAAGGTTGTCGC AGGGACACCTGACGCGGAAGACTTCGAGAAAGTCAAGTTCACTGAAGCGCGGCTTGTTGATGCAC ACAATAGCCAAATCGAAATAAACACCAAAACACAAGTTCGAATTA Found at i:20418532 original size:8 final size:8 Alignment explanation
Indices: 20418519--20418538 Score: 33 Period size: 8 Copynumber: 2.5 Consensus size: 8 20418509 TCAAACGTCT 20418519 ATATATCC 1 ATATATCC * 20418527 ATATATCT 1 ATATATCC 20418535 ATAT 1 ATAT 20418539 GGCAAATTCG Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.40, C:0.15, G:0.00, T:0.45 Consensus pattern (8 bp): ATATATCC Left flanking sequence: Indices 20418019 -- 20418518 CTAGCCTTAAGGGCAGTCAACAACGGAGAGACGTTCTCCCACCATATCTCCCAATCTAGGAGAAG AGGTCTGCGGCAACCGCCCTGCCTCCCAGTGACAGAGGAACCCCCCGTTACCTGCAACCTACGCC GGAGACCGCGGCGAGGGACCTGCACCTTATATTTAATTAATTTGTACATATTCAGTTCAACATAT ACATAGTAAATGTACCTTAAAACAAATAACCGCACTGGTGGGACAAATTTAGATTGTGTTTTGTC ACAAGAGGGAGACGAAAATAGCTTCTGGATGGAAGAACTTCCGGTTTCTTCTTCCCGGTTTCAGA TGGAAACCAAACGTAAATATTTTGAGCGATGGCTTAAACTTTACAAAGTCTGCATTAAAAATATA AAATGATTTGGCATGAAATGTACTGTACATTCTCCTCTTTCATTCTCGTCATAAAAATTGTTAAA CCTGTGAATTTAAGCGTCTCGTTTAAGAAATAGGCTCAAACGTCT Right flanking sequence: Indices 20418539 -- 20419038 GGCAAATTCGTAAACTAACTTAAGAACTAGCTAAAATCGTTAAGCCTTGATTGAAAGCTATAGTT ATTGAAACGGAATCAATCGCTGCTCGTTGGCCCAGGTGGACTTCCGCTTAACTCGGCTGTATCTT CTTTCGTCGCATCCACACAAGTTTCCTCTAGTTTGGGCATGGACTTCGCCACTTGCTGATCTTGA CCCTTTAGCAGCTGGCCTGCGGATAGTTCCTCCGGTTTCTCCACAACCACTGCACTCAGCTCAGC GCAAGACTTGGATTTGGCTCTGCTATGTTCGTGGCTGTTGCCTGCACACTTGACTGGAGAAGATG ATTTTCGGCCACTAGGAGCGTCACAAACCTCGCGGAGATCGGTGCGTGAATCCCTACAGCAAACC TTCTCGATGCATTCCACTGCCTGGCATTGCATCAGGCATTCTAGCGAGGCAGAGGCATTCTTATT GGTGGACGGATAGAACTCCGGTTGGATTGTGACCGCTCCGATTCC Found at i:20420100 original size:11 final size:10 Alignment explanation
Indices: 20420074--20420162 Score: 88 Period size: 11 Copynumber: 9.2 Consensus size: 10 20420064 ACTGGTAATA * 20420074 TAATATATAA 1 TAATATATAT 20420084 TAATATAATAT 1 TAATAT-ATAT 20420095 TAATATATA- 1 TAATATATAT 20420104 T-ATATAT-T 1 TAATATATAT 20420112 TAATATATATT 1 TAATATATA-T 20420123 TAATATATA- 1 TAATATATAT 20420132 TAATATATA- 1 TAATATATAT * 20420141 T-ATATATAA 1 TAATATATAT * 20420150 TATATATTTAT 1 TA-ATATATAT 20420161 TA 1 TA 20420163 CTTAGAAAAT Statistics Matches: 68, Mismatches: 3, Indels: 15 0.79 0.03 0.17 Matches are distributed among these distances: 8 14 0.21 9 18 0.26 10 9 0.13 11 27 0.40 ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49 Consensus pattern (10 bp): TAATATATAT Left flanking sequence: Indices 20419574 -- 20420073 GAGGTGTCTTTGCATCGGAGTTAGGGATAGATCCAAGTTGCTGGACATGGGTCGCTCCAGCACCA CGTTTCCGCCGGGTGTGAGGTGCAAAAAGCTACCCTGGTGCAGCGTGTATCCACCAATTAGCAGA TATGTCAGTCCATTCAGGATTAGCCCGATGAAACCCAGCATCATCACGGGTATGGGCAGATGCAT GGTGTCCTGATGATCGATGTGAACCAGAGTTTGCAGAGCTTCCACCACCAGCGAAAAGGATAACG AGGCCAGGATGATGAACACAATCAGCATGGTCAAAATATCGATCCTGGCCCAACCAAATGTATTC CGAAGCTTCTGCTCCCGACACTCCCTTTTGGCCCGTGTTTGGGCATCCGTGTCGGCCAGGCTTAT AGCTACTCCGGAGCCATTTATCTTGGTCAGGGCGGGGGAAGGATTCCTAGCCTCTGGCGCTTGTT TACTGTGCTGTAAGATAAGGAAGGCGAAATCAGAAACTGGTAATA Right flanking sequence: Indices 20420163 -- 20420662 CTTAGAAAATGCATCTAAATTTTATAGCCTCTAAAAATTCCTTCAAAAATTAATATTGTTAATTT GCTGTACAGCTCGCACTCAAGTTCATTCTTCTCTGATTTATTGTTATTAGTAATTGCCATAAGAC TTATATACAAAATTAACTTGTTTGTTCTGAAAACAATTGGCATAGAAATACATAGAATCGAATGG AAAAGCATAATCATCGTCATGCTTTCCATGCCAATTGGCAATGTCTCCTCTACAACAATTTTGGT GGGCAGCTATTTAAACACTCCGCTGATCGTCTGTCTGTCTGTCTGTCTGTCGGTCGGTCTGCTCC ATTATATAAGCCCAAAATCAGACCACTCAACTGTCCACACCTACAACATCGACCACTGTTTGAAA GCTTTCGATTTCTGGTGTTTGGAATCGCCTGTAACTCGCCGAATTTGGCCATGTCTTGTTCAGTT TCTGCGATTTTTTTTTTGGGCCTGGTCTTTGTCTTTTGCGAAACG Found at i:20422874 original size:10 final size:10 Alignment explanation
Indices: 20422856--20422876 Score: 35 Period size: 10 Copynumber: 2.1 Consensus size: 10 20422846 CCGTGGTTAC 20422856 CTCAGCGAAT 1 CTCAGCGAAT * 20422866 CTCATCGAAT 1 CTCAGCGAAT 20422876 C 1 C 20422877 GATCGTTCGA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24 Consensus pattern (10 bp): CTCAGCGAAT Left flanking sequence: Indices 20422356 -- 20422855 GAATGAACTGGCTGGGAATTTATATATATATTATATTATATATATATATATATATATATATATAT ATATATATTATACATTTCGATTCGGTATATATATTTATGATCATTAAAGCTTATTTAAAAGAATT ATAAATGAATCTTATCTTATAGCTTATTTCAATACAACTCAAAAATGCAGCATTAGTTAAAACTG TAACTATAGTAATTGTTATAATACCAAATATTAGCCCTTCGATAAACCCGGTAAAACCCATCCGA ACTGTGTCAAGTTCAAGATCCCAAAGGGGGATAAGCGCACCGATCCGATTTGGGGCGATACTGCC ACTGAACCGAGCTGAACCTGCCATATTTAGGGTTCAGTTCATTTCCAAGCTCGTATGCCATTCAC CACCACCATGATCGTCATCATGTGGGCACGGGCCTGAGCTCCTCCTGTCGCTTTTGCATGGGTTG CATGCAAATGAAGATGCTAAATGGGCCCGCTACACCCGTGGTTAC Right flanking sequence: Indices 20422877 -- 20423376 GATCGTTCGATAGCCTGGGACATTGACGTAATTTTACGTGATTGTGGACATATAGCTACCGATTG TTTGATGGACGCCCCCACTCAGTGTGTTTGCCGCCATGTAACCCCAAGGTTGAACCCCATTCGGT TGGTCATTTAAATGGCCTAAATGCCCTCTAGTAGAGTAATTAGCGAGGGACATGTCGCGGTTTAA TGGTATTTTTGGTTAATCCGAATAGACCATCTAAACAAAAACTGAAGGTCCGTGCAATGACCTTT ATGGTAAATAAATGTGATAAGTTGAGGTATACAATGTGCCTAACTTAAAGAACAGAACCATGGAC CTGCTATATGTTATACTTCATTAATGATATTTATAGTAATCCATTTATAGACAGCATTTCTATAT GATTTCACTGTCGTTATATAAAACTTCCTTAAAGTGACAGAACAAGCCCAAATCGACTGTTGATT TAAATCTGTCGCTTCCACGTGGAATCCTCAATAGGATTATTACGC Found at i:20423029 original size:9 final size:9 Alignment explanation
Indices: 20423015--20423033 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 20423005 GTTGGTCATT * 20423015 TAAATGGCC 1 TAAATGCCC 20423024 TAAATGCCC 1 TAAATGCCC 20423033 T 1 T 20423034 CTAGTAGAGT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26 Consensus pattern (9 bp): TAAATGCCC Left flanking sequence: Indices 20422515 -- 20423014 CAATACAACTCAAAAATGCAGCATTAGTTAAAACTGTAACTATAGTAATTGTTATAATACCAAAT ATTAGCCCTTCGATAAACCCGGTAAAACCCATCCGAACTGTGTCAAGTTCAAGATCCCAAAGGGG GATAAGCGCACCGATCCGATTTGGGGCGATACTGCCACTGAACCGAGCTGAACCTGCCATATTTA GGGTTCAGTTCATTTCCAAGCTCGTATGCCATTCACCACCACCATGATCGTCATCATGTGGGCAC GGGCCTGAGCTCCTCCTGTCGCTTTTGCATGGGTTGCATGCAAATGAAGATGCTAAATGGGCCCG CTACACCCGTGGTTACCTCAGCGAATCTCATCGAATCGATCGTTCGATAGCCTGGGACATTGACG TAATTTTACGTGATTGTGGACATATAGCTACCGATTGTTTGATGGACGCCCCCACTCAGTGTGTT TGCCGCCATGTAACCCCAAGGTTGAACCCCATTCGGTTGGTCATT Right flanking sequence: Indices 20423034 -- 20423533 CTAGTAGAGTAATTAGCGAGGGACATGTCGCGGTTTAATGGTATTTTTGGTTAATCCGAATAGAC CATCTAAACAAAAACTGAAGGTCCGTGCAATGACCTTTATGGTAAATAAATGTGATAAGTTGAGG TATACAATGTGCCTAACTTAAAGAACAGAACCATGGACCTGCTATATGTTATACTTCATTAATGA TATTTATAGTAATCCATTTATAGACAGCATTTCTATATGATTTCACTGTCGTTATATAAAACTTC CTTAAAGTGACAGAACAAGCCCAAATCGACTGTTGATTTAAATCTGTCGCTTCCACGTGGAATCC TCAATAGGATTATTACGCAAATTAACATTGCCGCCCAGAATACAATTTTATCAAATGTACAAACG CCTATGTTTGTCGTCGATTCGACTCTTAAATGAGCCAATTGCATTCCAAATTGTCACACGTGCAA TGGCATATAATTAGAATAGATCAAATGATAAAATCTATTGTTTTA Found at i:20423726 original size:8 final size:8 Alignment explanation
Indices: 20423713--20423728 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 20423703 ACAAACTATT 20423713 TGGATGAG 1 TGGATGAG 20423721 TGGATGAG 1 TGGATGAG 20423729 GCCATAGACA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.25, C:0.00, G:0.50, T:0.25 Consensus pattern (8 bp): TGGATGAG Left flanking sequence: Indices 20423213 -- 20423712 TATACTTCATTAATGATATTTATAGTAATCCATTTATAGACAGCATTTCTATATGATTTCACTGT CGTTATATAAAACTTCCTTAAAGTGACAGAACAAGCCCAAATCGACTGTTGATTTAAATCTGTCG CTTCCACGTGGAATCCTCAATAGGATTATTACGCAAATTAACATTGCCGCCCAGAATACAATTTT ATCAAATGTACAAACGCCTATGTTTGTCGTCGATTCGACTCTTAAATGAGCCAATTGCATTCCAA ATTGTCACACGTGCAATGGCATATAATTAGAATAGATCAAATGATAAAATCTATTGTTTTAGAAC CCCATAGAGATAGACATGGAAAGCGAGTAAGCTAAGTACTAAAGCGCTAAACGGCGCCTCGGGGG CACTAGATTGTGCGCCCCAGCAAACAATCGACTGTTTTCCATACTATAGCTATAGTAATTCCAGC AGAGACATTGTAGAAATAACAATTAGCAGGTAGCAACAAACTATT Right flanking sequence: Indices 20423729 -- 20424228 GCCATAGACATCTGTTTGATTAAATGGATTCTGTGTACTCGTGTATCTTCCAGTTGTTCCACTAA ATGTTCATTTCCTCAATTTGATTTCGTTTTCATTCGAAATCCGAAATGGATGGGTAGTGGGTGGC AGGAGGCAATGTTATATAGGCTCGAACAAAAGATAACACAAGATAAGCAGAGCTACAGATACAGA TACAGATAAAGATACTGATTCGTGTGAAGCCTCAGGTCGCTCATTGTTGCTGTAGTTGCTAGGGG ATAATGAAGATAACGAAGTGATCCTCCCGATAAAATGTGGTGTGATATGAGTGGCATGTGGATGA GAACTGACGGTTCCCAAAGACTACCAAAAAAAAAGCAAAGATGTCAAGGCAGGTCTAAAAGCTGA AATTAGGCTTAGCTTTTCATTTACAATTTTGTATACCCATTACTCGTAGAGCAGGAGGGTATACT AGACACCCAGGAAAATTTTAGAGTAATAATAGGGTAATGCAAGGT Found at i:20423901 original size:10 final size:10 Alignment explanation
Indices: 20423883--20423904 Score: 37 Period size: 10 Copynumber: 2.2 Consensus size: 10 20423873 TATAGGCTCG 20423883 AACAAAAGAT 1 AACAAAAGAT * 20423893 AACACAAGAT 1 AACAAAAGAT 20423903 AA 1 AA 20423905 GCAGAGCTAC Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.68, C:0.14, G:0.09, T:0.09 Consensus pattern (10 bp): AACAAAAGAT Left flanking sequence: Indices 20423383 -- 20423882 ACATTGCCGCCCAGAATACAATTTTATCAAATGTACAAACGCCTATGTTTGTCGTCGATTCGACT CTTAAATGAGCCAATTGCATTCCAAATTGTCACACGTGCAATGGCATATAATTAGAATAGATCAA ATGATAAAATCTATTGTTTTAGAACCCCATAGAGATAGACATGGAAAGCGAGTAAGCTAAGTACT AAAGCGCTAAACGGCGCCTCGGGGGCACTAGATTGTGCGCCCCAGCAAACAATCGACTGTTTTCC ATACTATAGCTATAGTAATTCCAGCAGAGACATTGTAGAAATAACAATTAGCAGGTAGCAACAAA CTATTTGGATGAGTGGATGAGGCCATAGACATCTGTTTGATTAAATGGATTCTGTGTACTCGTGT ATCTTCCAGTTGTTCCACTAAATGTTCATTTCCTCAATTTGATTTCGTTTTCATTCGAAATCCGA AATGGATGGGTAGTGGGTGGCAGGAGGCAATGTTATATAGGCTCG Right flanking sequence: Indices 20423905 -- 20424404 GCAGAGCTACAGATACAGATACAGATAAAGATACTGATTCGTGTGAAGCCTCAGGTCGCTCATTG TTGCTGTAGTTGCTAGGGGATAATGAAGATAACGAAGTGATCCTCCCGATAAAATGTGGTGTGAT ATGAGTGGCATGTGGATGAGAACTGACGGTTCCCAAAGACTACCAAAAAAAAAGCAAAGATGTCA AGGCAGGTCTAAAAGCTGAAATTAGGCTTAGCTTTTCATTTACAATTTTGTATACCCATTACTCG TAGAGCAGGAGGGTATACTAGACACCCAGGAAAATTTTAGAGTAATAATAGGGTAATGCAAGGTC AACAGACTTAATGCCATTTTTTGGGGTAAAAGATTTAATGTACACTTGTTTTCGAAACCGATTAA AAAAAAAAGAAAAAGTTGGCATATCACGCTAGATTGAATAAAGTAATTGCTCGTATTTATTGGAT TTGTATATTTAGCGAATTTTTTTTTTTCAAATTTAATGCTTACTG Found at