TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_3R assembled 2004-3-5 md5checksum:6b279651b3b268f11e0dd1d87ded0ccc Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 27905053 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28 Found at i: i:26077666 original size:9 final size:9 Alignment explanation
Indices: 26077648--26077666 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 26077638 GTGGCCTCGA * 26077648 GTGTTGCTG 1 GTGCTGCTG 26077657 GTGCTGCTG 1 GTGCTGCTG 26077666 G 1 G 26077667 CACTATTGCC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.00, C:0.16, G:0.47, T:0.37 Consensus pattern (9 bp): GTGCTGCTG Left flanking sequence: Indices 26077148 -- 26077647 TCCTCCGGTTGGGAACTTGGAATGGATGGCAGCATTTTTGGTCACGAATTGGGAGATGAGGGCAA TTTGTTGGGACAGGAGGTTTCCAATAGCGCTATTAACTTTGGACATCAAGTGTCCCAGGAAGCGG TAAGTTAAACAAGAACAGAAGCAATTTAAAATTCTTCAAATATTTTTCAATTCTTTGTAGGAAGA GGCAGCCAGTGCAGAACTCAAAGCCATGGCAAGCCAATCTGCCAATCAATCCAGTAAGGTATGTA CATATATCTTTTACAATGATAAATATGTAGGTGCATATTCCACAATCGAATGTTACTTTTGTTCT TCGCAGAAATCTGTCAGTAAGCGTGATTTAACAAGTAGCAACGAGAATCCTTCGGTTACCTGTGC TTGCACCTGTTCCACCGATGGCGCTGCTTCCAAAGTGGGAAATAAGGTAGCAGAGTCGGCCGGAA AGGCAGCTCATGATGTAGCCGGCGGTGCTGGAAATGTGGCCTCGA Right flanking sequence: Indices 26077667 -- 26078166 CACTATTGCCCACGATGCTGCAGGTGCTGCATCTAGTGTTGCAAGTGATGCTGGACACATTTTCC ACGACGCCGGCAAGGTTGGAGGTGACATTGGAAATGCTGCTGGAAATGTCGCTGGAAGTGCAGCA AATGCTGCTGGAAATGTGGCCTCGAGTGTTGCTGGTGCTGCTGGCACTATTGCCCACGATGCTGC AGGTGCTGCATCTAGTGTTGCAAGTGATGCTGGACACATTTTCCACGACGCCGGCAAGGTTGGAG GTGATATTGGAAGTGCTGCTGGAAATGTCGCTGGAGATGCATCAAATGCTGCTGGAGATGTTGCG CATGATGCTGCAAATGCTGCTGGAAGTGTCGCTGGAAGTGCGGCAAATGCTGCTGGAGATGTTGC AAATGCCGCTGGAAATGTAGCTGGGGATGCAGCAAATGCTGCTGGAGATGTTGCGCATGCAGCTG GAAATGCGGCCGGAGATGTTGCAAATGCCGCCGGAAATGTTGCTG Found at i:26077840 original size:9 final size:9 Alignment explanation
Indices: 26077822--26077840 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 26077812 GTGGCCTCGA * 26077822 GTGTTGCTG 1 GTGCTGCTG 26077831 GTGCTGCTG 1 GTGCTGCTG 26077840 G 1 G 26077841 CACTATTGCC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.00, C:0.16, G:0.47, T:0.37 Consensus pattern (9 bp): GTGCTGCTG Left flanking sequence: Indices 26077322 -- 26077821 TTTCAATTCTTTGTAGGAAGAGGCAGCCAGTGCAGAACTCAAAGCCATGGCAAGCCAATCTGCCA ATCAATCCAGTAAGGTATGTACATATATCTTTTACAATGATAAATATGTAGGTGCATATTCCACA ATCGAATGTTACTTTTGTTCTTCGCAGAAATCTGTCAGTAAGCGTGATTTAACAAGTAGCAACGA GAATCCTTCGGTTACCTGTGCTTGCACCTGTTCCACCGATGGCGCTGCTTCCAAAGTGGGAAATA AGGTAGCAGAGTCGGCCGGAAAGGCAGCTCATGATGTAGCCGGCGGTGCTGGAAATGTGGCCTCG AGTGTTGCTGGTGCTGCTGGCACTATTGCCCACGATGCTGCAGGTGCTGCATCTAGTGTTGCAAG TGATGCTGGACACATTTTCCACGACGCCGGCAAGGTTGGAGGTGACATTGGAAATGCTGCTGGAA ATGTCGCTGGAAGTGCAGCAAATGCTGCTGGAAATGTGGCCTCGA Right flanking sequence: Indices 26077841 -- 26078340 CACTATTGCCCACGATGCTGCAGGTGCTGCATCTAGTGTTGCAAGTGATGCTGGACACATTTTCC ACGACGCCGGCAAGGTTGGAGGTGATATTGGAAGTGCTGCTGGAAATGTCGCTGGAGATGCATCA AATGCTGCTGGAGATGTTGCGCATGATGCTGCAAATGCTGCTGGAAGTGTCGCTGGAAGTGCGGC AAATGCTGCTGGAGATGTTGCAAATGCCGCTGGAAATGTAGCTGGGGATGCAGCAAATGCTGCTG GAGATGTTGCGCATGCAGCTGGAAATGCGGCCGGAGATGTTGCAAATGCCGCCGGAAATGTTGCT GGAAATGCATCAAATGCTGCTGGAGATGTTGCAAGTGCTGCTGGAAATGTTGCTGGAAGTGTTGC TAATGCTGCTGGAAATGTAGCTGGAGATGCAGCAAATGCTGCTGGTGATGTTGCAAATGCCGCTG GAAATGTCGCTGGAGATGTTGCAAATGCCGCTGGAAATGTCGCTG Found at i:26080280 original size:7 final size:7 Alignment explanation
Indices: 26080268--26080283 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 26080258 CTCCGGAAGA 26080268 CCCTGCT 1 CCCTGCT 26080275 CCCTGCT 1 CCCTGCT 26080282 CC 1 CC 26080284 TCGAGGCCTG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.00, C:0.62, G:0.12, T:0.25 Consensus pattern (7 bp): CCCTGCT Left flanking sequence: Indices 26079768 -- 26080267 AACTTTGGAGCAGTTCAATTAACAAATAAATATTCAATCGCGCAAAGAGCTTAGTGAGTGCGTCT TTTGTGCTCCCATTTTGGGCAGAGTTCATCAACAAGTTGGGCATCAATTAGTGTTGGGTTGTTTT GAAATCCAAGAAGAGTAAACAAGGTCGGATTCCAGAATCAGAAATGCGTGCATCTGCTTCTAGCT CGATCTCCAAAGGGGGTTATATACTCGTATTCAGAATGGAAGAGGGGTCAAATGATACGAGGTGA ATCGAAGTCGGAACACGTGATTGCCAACAACATTAGGGGCTCAAGTTTCCAAAAAAAAAAAAAAA TGGAATAAAATCCATCAGTAGAAGGAGGAAGCGCCATGCACACATGCCGGTTTTTGAATAATTTT TATTATGACAAGTATTTAGGTTGCCTTTGTTCCTCGAACAGAAGCGAATTAGGTCATCTCGAGGG GAATGGGAATCATACGGAATATGGTGGTACCCCAACTCCGGAAGA Right flanking sequence: Indices 26080284 -- 26080783 TCGAGGCCTGCTATTAAGTCACTTTATCGAGCGGCAAATGTCTGTTTAGCTGACTCCTCCGCTCA CACACGATCCCAATCGCTCCCCCAAAGGAAAGTCGTGCCAGCCTGACCTGTAATTATGAAAATTA ACAAACATTTTGGTAATTAATTTCGGCAACCCTTTGGTCGCCTCTTGCGGCTTGTGTGGCAACCA TAATCCCGCATCAATTAAAATGCACAGCCCGTAATCCCCACCCACAAAACCTGACTAACCGAGGT TCGTGCGAACACTGGATACATATTACAATAGACAAAAATTGTGAACTGCAGCTATTGGCAAACAG GAACTTTAAACACCCTTTAGCATACGATTTTTACAAGTTTTTATTGAAATAATCATATGGTTCGT AGCAGCAACATGAAAAAATTTATAAGCGATTATAATAATTCTATAATAATTAACACAGCCTATGT TTTGTAGAGTATAAATATGATAATAGAAATCGTTTTCATTAATTT Found at i:26080928 original size:10 final size:10 Alignment explanation
Indices: 26080909--26080937 Score: 51 Period size: 10 Copynumber: 2.9 Consensus size: 10 26080899 TGAATCGCAT * 26080909 ATATACATAC 1 ATATATATAC 26080919 ATATATATAC 1 ATATATATAC 26080929 ATATATATA 1 ATATATATA 26080938 TATGCAATGG Statistics Matches: 18, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 10 18 1.00 ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38 Consensus pattern (10 bp): ATATATATAC Left flanking sequence: Indices 26080409 -- 26080908 AATTAACAAACATTTTGGTAATTAATTTCGGCAACCCTTTGGTCGCCTCTTGCGGCTTGTGTGGC AACCATAATCCCGCATCAATTAAAATGCACAGCCCGTAATCCCCACCCACAAAACCTGACTAACC GAGGTTCGTGCGAACACTGGATACATATTACAATAGACAAAAATTGTGAACTGCAGCTATTGGCA AACAGGAACTTTAAACACCCTTTAGCATACGATTTTTACAAGTTTTTATTGAAATAATCATATGG TTCGTAGCAGCAACATGAAAAAATTTATAAGCGATTATAATAATTCTATAATAATTAACACAGCC TATGTTTTGTAGAGTATAAATATGATAATAGAAATCGTTTTCATTAATTTGTGACACTCTCTGTC CATCAATTGGCCGTCATTGTTTGGACCATTAATTGGCTGTTTGACAGCTAGCCGAGTCCACGGAT CGCAGTTACCAGTTGCGTGGGTGTGATTCGGTAATTGAATCGCAT Right flanking sequence: Indices 26080938 -- 26081437 TATGCAATGGGGATCGGTTACCAAGAGGGGCAGGCAGGACTGCCAATTGTGCAAATCGAGTTGGC CCGCCAACCGGTTTCGACCCGTTTTCTATGTTAGTGGTCAAGGTCTAAGGAGCAGCGGACATTTG GACGGACTCCACTGAGGAGCGGCTGTATAAATGCTACCAAAGCGGAATAAACAATAACAGCAGGA GCTGCAAAAAGCCAGGCGAATGTAAAACCACAAAGAGTCGATAAAACATAACCAAAAGGAGTCAC GAGAATTGCATAAACAATGTATGTACAAAGTCTGTCAGAGTTCGTACATAAATCGAGTTATATAT AGCTGGGAGCAAGTTGACTAAAAGTTGGCGAGGGTACCTCAAGTCGACACACACTTTTTAAAAGT GACACAACTTTTTTGACGGACACTCTTTTGAGCGGACAAGCTGCAAACTGATATATAAATTTTAT TATTTAAGTAGATACATGGGCAACCTTGAAACGATTGTTCTCTCA Found at i:26081493 original size:7 final size:7 Alignment explanation
Indices: 26081482--26081505 Score: 41 Period size: 7 Copynumber: 3.4 Consensus size: 7 26081472 AGGGGCACGC 26081482 ACATGCA 1 ACATGCA * 26081489 TCATGCA 1 ACATGCA 26081496 ACATGCA 1 ACATGCA 26081503 ACA 1 ACA 26081506 GCGGCGTGAT Statistics Matches: 15, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 7 15 1.00 ACGTcount: A:0.42, C:0.29, G:0.12, T:0.17 Consensus pattern (7 bp): ACATGCA Left flanking sequence: Indices 26080982 -- 26081481 AATTGTGCAAATCGAGTTGGCCCGCCAACCGGTTTCGACCCGTTTTCTATGTTAGTGGTCAAGGT CTAAGGAGCAGCGGACATTTGGACGGACTCCACTGAGGAGCGGCTGTATAAATGCTACCAAAGCG GAATAAACAATAACAGCAGGAGCTGCAAAAAGCCAGGCGAATGTAAAACCACAAAGAGTCGATAA AACATAACCAAAAGGAGTCACGAGAATTGCATAAACAATGTATGTACAAAGTCTGTCAGAGTTCG TACATAAATCGAGTTATATATAGCTGGGAGCAAGTTGACTAAAAGTTGGCGAGGGTACCTCAAGT CGACACACACTTTTTAAAAGTGACACAACTTTTTTGACGGACACTCTTTTGAGCGGACAAGCTGC AAACTGATATATAAATTTTATTATTTAAGTAGATACATGGGCAACCTTGAAACGATTGTTCTCTC AAGATCAAGAGTGAACCACCCTGCTTTTTGTGGCAAGGGGCACGC Right flanking sequence: Indices 26081506 -- 26082005 GCGGCGTGATTGCAATGCAGCGAGCAAAAAAAAAAGCTGAAAATGCATCGAAGTGGCATCTAAAC AGGCATGTGTACGTGCCTCGTTAAAAACTGCATTTACTCCACGTAATGCAATGGTGTTTGTGTGT CAAAAAGGGTTGCCAAACCACTTTAAGAGCCTTATGTACACAAATACACAAAGGAGAAATCCCTA TAATGAACATGATTCCAGCCGCAAAACTGGTTTTCGATTACGTCGTTGCTGCCTTTGCCCCTCCT GCCCCCCTTTTGAAATTTTTGCAGAGATGCGAGAAGCCAAAGGTTGTCTTATCGTCGACACTTGA CCAAAACCAGGAGTAATCCCGAATCGCGGCTATTCAGGGTGAGATACGAATCAGATATTTGCCCA GCTATCGATGCGCATCCACGATTCCGAAAAAACCAACTGCAGCCCTAAAAGCCACAATTTCAAGC TGTCAACTGTCACTCCCAAAAAACCAAAATTATCGGACTTTTGAC Found at i:26081685 original size:8 final size:8 Alignment explanation
Indices: 26081672--26081687 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 26081662 GAGCCTTATG 26081672 TACACAAA 1 TACACAAA 26081680 TACACAAA 1 TACACAAA 26081688 GGAGAAATCC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.25, G:0.00, T:0.12 Consensus pattern (8 bp): TACACAAA Left flanking sequence: Indices 26081172 -- 26081671 GATAAAACATAACCAAAAGGAGTCACGAGAATTGCATAAACAATGTATGTACAAAGTCTGTCAGA GTTCGTACATAAATCGAGTTATATATAGCTGGGAGCAAGTTGACTAAAAGTTGGCGAGGGTACCT CAAGTCGACACACACTTTTTAAAAGTGACACAACTTTTTTGACGGACACTCTTTTGAGCGGACAA GCTGCAAACTGATATATAAATTTTATTATTTAAGTAGATACATGGGCAACCTTGAAACGATTGTT CTCTCAAGATCAAGAGTGAACCACCCTGCTTTTTGTGGCAAGGGGCACGCACATGCATCATGCAA CATGCAACAGCGGCGTGATTGCAATGCAGCGAGCAAAAAAAAAAGCTGAAAATGCATCGAAGTGG CATCTAAACAGGCATGTGTACGTGCCTCGTTAAAAACTGCATTTACTCCACGTAATGCAATGGTG TTTGTGTGTCAAAAAGGGTTGCCAAACCACTTTAAGAGCCTTATG Right flanking sequence: Indices 26081688 -- 26082187 GGAGAAATCCCTATAATGAACATGATTCCAGCCGCAAAACTGGTTTTCGATTACGTCGTTGCTGC CTTTGCCCCTCCTGCCCCCCTTTTGAAATTTTTGCAGAGATGCGAGAAGCCAAAGGTTGTCTTAT CGTCGACACTTGACCAAAACCAGGAGTAATCCCGAATCGCGGCTATTCAGGGTGAGATACGAATC AGATATTTGCCCAGCTATCGATGCGCATCCACGATTCCGAAAAAACCAACTGCAGCCCTAAAAGC CACAATTTCAAGCTGTCAACTGTCACTCCCAAAAAACCAAAATTATCGGACTTTTGACTGTCATT TGGAATACTTAACACGCACATCAGCAACAGCTTCATTAAAATTAATTAATGCTTAGGCACACATA GCGGTGGAAGCACTTTGGAAAAAGTTGCTGTCAGAATCAAATTTCATAAATAAATTACTTTTGAT AACAAAATATTATAAAAAAACCTAAAACAAATTAAAATGGCATTA Found at i:26081972 original size:7 final size:8 Alignment explanation
Indices: 26081955--26081972 Score: 29 Period size: 7 Copynumber: 2.4 Consensus size: 8 26081945 AGCCACAATT 26081955 TCAAGCTG 1 TCAAGCTG 26081963 TCAA-CTG 1 TCAAGCTG 26081970 TCA 1 TCA 26081973 CTCCCAAAAA Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 7 6 0.60 8 4 0.40 ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28 Consensus pattern (8 bp): TCAAGCTG Left flanking sequence: Indices 26081455 -- 26081954 CCCTGCTTTTTGTGGCAAGGGGCACGCACATGCATCATGCAACATGCAACAGCGGCGTGATTGCA ATGCAGCGAGCAAAAAAAAAAGCTGAAAATGCATCGAAGTGGCATCTAAACAGGCATGTGTACGT GCCTCGTTAAAAACTGCATTTACTCCACGTAATGCAATGGTGTTTGTGTGTCAAAAAGGGTTGCC AAACCACTTTAAGAGCCTTATGTACACAAATACACAAAGGAGAAATCCCTATAATGAACATGATT CCAGCCGCAAAACTGGTTTTCGATTACGTCGTTGCTGCCTTTGCCCCTCCTGCCCCCCTTTTGAA ATTTTTGCAGAGATGCGAGAAGCCAAAGGTTGTCTTATCGTCGACACTTGACCAAAACCAGGAGT AATCCCGAATCGCGGCTATTCAGGGTGAGATACGAATCAGATATTTGCCCAGCTATCGATGCGCA TCCACGATTCCGAAAAAACCAACTGCAGCCCTAAAAGCCACAATT Right flanking sequence: Indices 26081973 -- 26082472 CTCCCAAAAAACCAAAATTATCGGACTTTTGACTGTCATTTGGAATACTTAACACGCACATCAGC AACAGCTTCATTAAAATTAATTAATGCTTAGGCACACATAGCGGTGGAAGCACTTTGGAAAAAGT TGCTGTCAGAATCAAATTTCATAAATAAATTACTTTTGATAACAAAATATTATAAAAAAACCTAA AACAAATTAAAATGGCATTAAATATTGTTACAAAACTAAACCAATTTTATTTTAAGGCTTCAATT ACTTTTTTTTCCAGTGCAGTGACACCTAAAAACACACGACTAGGACCAAAGACATCATTAAGCTC GTATCAGTTTACAATGTTTTTTTCTCGTCGCGGCAGCCGAAAAATACTCACAAATTAAATTAAAT GAAGTGAGTGTGAAAATGCTGCAGGTGGGAAAGGGGGTGGGCGATTTGTGTTGAGGGGGTTAGGG GCGTGGCTGCTGGCACAAATGAAAGCCACAGAGTGCAAACGTTAA Found at i:26082558 original size:7 final size:7 Alignment explanation
Indices: 26082546--26082559 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 26082536 CCTATATATG 26082546 TATGTAC 1 TATGTAC 26082553 TATGTAC 1 TATGTAC 26082560 CCACATATAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43 Consensus pattern (7 bp): TATGTAC Left flanking sequence: Indices 26082046 -- 26082545 CATTAAAATTAATTAATGCTTAGGCACACATAGCGGTGGAAGCACTTTGGAAAAAGTTGCTGTCA GAATCAAATTTCATAAATAAATTACTTTTGATAACAAAATATTATAAAAAAACCTAAAACAAATT AAAATGGCATTAAATATTGTTACAAAACTAAACCAATTTTATTTTAAGGCTTCAATTACTTTTTT TTCCAGTGCAGTGACACCTAAAAACACACGACTAGGACCAAAGACATCATTAAGCTCGTATCAGT TTACAATGTTTTTTTCTCGTCGCGGCAGCCGAAAAATACTCACAAATTAAATTAAATGAAGTGAG TGTGAAAATGCTGCAGGTGGGAAAGGGGGTGGGCGATTTGTGTTGAGGGGGTTAGGGGCGTGGCT GCTGGCACAAATGAAAGCCACAGAGTGCAAACGTTAAACAACCAACTTTGCTGGTCAAAAGGAAA CACGCTCAAGTGGTTTTCAGGCCACCAACAGACCCCCTATATATG Right flanking sequence: Indices 26082560 -- 26083059 CCACATATATATATGTACATATGTATGTATATTATGGTCACCTGTATTTTGTGGTACCCTCGTGT CTGCCTGTTGATGTTGAATCCAGATAAGCAAATTGTTGCCGAAAAATAGAGGCACAAAGGAAGCG ATTTGGACGTTTTAATGATGATAGAGCATGACACAGAATAAATGAAAATGAAGTGTGGAAAAAAA ATTCATTTAAACCGAACCCGTCAGCAAAAGTAACAGTTAGTGAAAAGAGTTTTGGTGTGGAAAGT CGAGGAGTCTTGATTAATGACTGCCAGGATTAATTCGCTTCATTTTGGAGATAGCTTCCAGTGAC GGGCAACAATTGTTGGCCACTGGAAAAGTGAATGATTCCGCCAGGAAGCGAATCAACAAGCCGGA TCTGTTGATTCTTTTTAATGAAATTAGCATACTTAGGGGCTTTTGAAGAATCCGAATGCATTGCA CTTCTTTAAAAACAAACGAAGCATGACTTCAGGTGCAGATTTCTT Found at i:26083738 original size:8 final size:8 Alignment explanation
Indices: 26083725--26083740 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 26083715 GAGCGAGCTT 26083725 CCCCGAAA 1 CCCCGAAA 26083733 CCCCGAAA 1 CCCCGAAA 26083741 ATACAAAAGC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.50, G:0.12, T:0.00 Consensus pattern (8 bp): CCCCGAAA Left flanking sequence: Indices 26083225 -- 26083724 ATGTCTTCACACAATTTATACAGACACATGCATTCGCAAGCTGCTCCTGATGTTTGTCATAAACA AAGGTCTCGATAATTATGATAATTCTGTTTTATGCTCCGCTTCTTCCAAAACTTTTTCTCTTTCG TCTGCCTGTCAAATTGTCGTTGTCATAAAAAATATATATGTCCAAAAAATGAGAAAACCTCAAGT GTGTGAAAATGGCAGTACACAAATACATATGTACTTATTGTGCACTAAAAAATAAATATTATAAA TCACTTTGGTTTTGGTTGTGCTGTTTACATGCTAATAAATTGTATGCTACTTACTTTTATACACC CATCTATATGTTTTAAATTCGACTATTTATGCAACTATGAAGTTGGCTTGCATTATTTGTTTCAG TGCAACTATGCCCACAATCAGGTATACAAATATATGTGCTTGCCATGTTGTGAATGCATATTTCT TGGCCTTTTTTGCTGTCGCTCAACCTGTTTCACCTGAGCGAGCTT Right flanking sequence: Indices 26083741 -- 26084240 ATACAAAAGCCCTGATGAGTGGACAGTGGGAAGGTTGCATTATCATCATGGTTATTATAATTATA ATTTGGTGTCTGCCTTTTTGGGGTTTCCTTTGCGCACCTTTAAGGGGGAACAAGGATAACAAGAG CGTGTGCAGTTAGCACTGGCTAAAACTGATTTAATTTATAATTTTTGTCGGGCAACAGAGGGCTT CCTGTTCGCTGTCTCTTTTTAAGTGTTTTTATCCCCTCGTGGAACCCTTCTAAGCTGCGATTCTT AATGGGCAACGAGGCGTCTCAAGGTCTTCTCTGTCAACTGATAAAGAGATAATGTTGCAAAAAAC GCAGTGAAGAATTATAAGAAGACGGGGAACAAAAAGTGAAGTAGCAACTGTCTGACTGGCACACA CATTCAGAAAAATACAGCCATGATATCATCGCAGAAACAGAAACAAAAACCACAGAGAAATAAGG GAACAAAAAAACCTTTATTCCAAATATAAAAAACCACTAAAAAAG Found at i:26087167 original size:7 final size:7 Alignment explanation
Indices: 26087155--26087168 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 26087145 TTGCCATAAA 26087155 TATGATT 1 TATGATT 26087162 TATGATT 1 TATGATT 26087169 GGCGCATTTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57 Consensus pattern (7 bp): TATGATT Left flanking sequence: Indices 26086655 -- 26087154 TGCTTACAGGGCAAAATGCAAATCAAATGACAAAAGCAATTAAATTTAACCCATTTCCAATGCGA AAAAAATGTCTCACTTTTTGTGGTTATTTCATGTGGAAAATGTACTGCATCACGACTACAAAGGC GGAAAAGCGGGAAAAACTAGAAGGCACAAGAAAAAAAAAAGAATAAGGAAAAGGGCTCTTTTAAT TATTTGGCGCCTGCATGTGTCTCAATTTAAATTAGCTGCCGGGGTTTTTTCTACGGCTTCCAAGG AAATTAAAATTCAATTTAAAAATGCCACGAAAATAACAGAGAAAAAAAAAGTGGAAAGCTGCACA AAAAAAAATCGTACAACAAAAGTGGGCTAATTTTGTTATGGTCCCTCGGGGGGGTTGCTGCCAAA GTTTGGAAATGGTCGAAGCGAAAGGGTTGCCCTTGGAAATTAGTTTTAGAATTTATGGTGCTTCC TTGGGTGGGGGACTAGTCTTTAGTCCGCCTTTCAATTGCCATAAA Right flanking sequence: Indices 26087169 -- 26087668 GGCGCATTTAATAGGGATAATTTTCATTATTTCTGCCACTGGAAACAGCATCGCATTCGCTTCAC ACCCGCCCCAATTAACGCAAAATTGCAGAAGGCTCTACTGCCTGGCATCCCCCCCTTTTCAGTTC CTTTCCCTTCACTGATCTTTCGTGGACCCCAGTGCTGCAGCCACCTCGTGGGGCAACTATTCATC AGTCATGCAATCGCCGCTGCCTGCGAGAATCCACTGCGATCCTCAATGACATCGAAATGTGCGGT CGGCATGCCGGGAACTTCGCGGCACACAAGATGTGCGGCGCAGGAGGAGGAGCTGGGAGCCCCCG CCAGAAAACCTTGAAACGACAGCCGAAGGGCTGGTTCCTCCAACTCCCAGCTCCCAGCAGCTCGG CTCCCCACTCCCCCAAATCTTCGAGGGCTTCGAGTTTCCTTCGGTCGCGGGATCAGCACAAAGGC GGCGTGCAAAGTAAACAGCGGAATCAGCGCACAGTGGTTGAAAAT Found at i:26087549 original size:7 final size:7 Alignment explanation
Indices: 26087533--26087551 Score: 31 Period size: 7 Copynumber: 2.7 Consensus size: 7 26087523 GCTGGTTCCT * 26087533 CCAACTC 1 CCAGCTC 26087540 CCAGCTC 1 CCAGCTC 26087547 CCAGC 1 CCAGC 26087552 AGCTCGGCTC Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.21, C:0.58, G:0.11, T:0.11 Consensus pattern (7 bp): CCAGCTC Left flanking sequence: Indices 26087033 -- 26087532 GTTGCTGCCAAAGTTTGGAAATGGTCGAAGCGAAAGGGTTGCCCTTGGAAATTAGTTTTAGAATT TATGGTGCTTCCTTGGGTGGGGGACTAGTCTTTAGTCCGCCTTTCAATTGCCATAAATATGATTT ATGATTGGCGCATTTAATAGGGATAATTTTCATTATTTCTGCCACTGGAAACAGCATCGCATTCG CTTCACACCCGCCCCAATTAACGCAAAATTGCAGAAGGCTCTACTGCCTGGCATCCCCCCCTTTT CAGTTCCTTTCCCTTCACTGATCTTTCGTGGACCCCAGTGCTGCAGCCACCTCGTGGGGCAACTA TTCATCAGTCATGCAATCGCCGCTGCCTGCGAGAATCCACTGCGATCCTCAATGACATCGAAATG TGCGGTCGGCATGCCGGGAACTTCGCGGCACACAAGATGTGCGGCGCAGGAGGAGGAGCTGGGAG CCCCCGCCAGAAAACCTTGAAACGACAGCCGAAGGGCTGGTTCCT Right flanking sequence: Indices 26087552 -- 26088051 AGCTCGGCTCCCCACTCCCCCAAATCTTCGAGGGCTTCGAGTTTCCTTCGGTCGCGGGATCAGCA CAAAGGCGGCGTGCAAAGTAAACAGCGGAATCAGCGCACAGTGGTTGAAAATATAGGAAAAAATA GATATATTTTAAAGTGTTTGGTAAAAAAGTCTTCATCTTCTCTAAGCTGAAATGAATTTACACAT AGAAAATACTTAGTTAAATAGTTAAAACAGTTTATTTCGACTAACTTTTAGTTTCAATATGAGCC CACTGTTCTCAAAGTAAGAACTTCGGGATCCCTGGGCACGACGCCTGGCCAGAACAAACATTGTT AGCACTAAATGTCGTCTTGGTCCTCCCCTTAACCCCTTAACCCCTTAACCCTTATCCTGCCCGCC CCGTCCATCCAGCTGCAGCAATATTTACACGCGGTGCACGAAGTTGCAATGAAATGTTGCTGTTG TTGGTTGTTGGTTGTAGCTGGTTGGTGTCGACAGATATGCCGAGG Found at i:26087682 original size:10 final size:10 Alignment explanation
Indices: 26087663--26087682 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 26087653 CACAGTGGTT * 26087663 GAAAATATAG 1 GAAAAAATAG 26087673 GAAAAAATAG 1 GAAAAAATAG 26087683 ATATATTTTA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.65, C:0.00, G:0.20, T:0.15 Consensus pattern (10 bp): GAAAAAATAG Left flanking sequence: Indices 26087163 -- 26087662 ATGATTGGCGCATTTAATAGGGATAATTTTCATTATTTCTGCCACTGGAAACAGCATCGCATTCG CTTCACACCCGCCCCAATTAACGCAAAATTGCAGAAGGCTCTACTGCCTGGCATCCCCCCCTTTT CAGTTCCTTTCCCTTCACTGATCTTTCGTGGACCCCAGTGCTGCAGCCACCTCGTGGGGCAACTA TTCATCAGTCATGCAATCGCCGCTGCCTGCGAGAATCCACTGCGATCCTCAATGACATCGAAATG TGCGGTCGGCATGCCGGGAACTTCGCGGCACACAAGATGTGCGGCGCAGGAGGAGGAGCTGGGAG CCCCCGCCAGAAAACCTTGAAACGACAGCCGAAGGGCTGGTTCCTCCAACTCCCAGCTCCCAGCA GCTCGGCTCCCCACTCCCCCAAATCTTCGAGGGCTTCGAGTTTCCTTCGGTCGCGGGATCAGCAC AAAGGCGGCGTGCAAAGTAAACAGCGGAATCAGCGCACAGTGGTT Right flanking sequence: Indices 26087683 -- 26088182 ATATATTTTAAAGTGTTTGGTAAAAAAGTCTTCATCTTCTCTAAGCTGAAATGAATTTACACATA GAAAATACTTAGTTAAATAGTTAAAACAGTTTATTTCGACTAACTTTTAGTTTCAATATGAGCCC ACTGTTCTCAAAGTAAGAACTTCGGGATCCCTGGGCACGACGCCTGGCCAGAACAAACATTGTTA GCACTAAATGTCGTCTTGGTCCTCCCCTTAACCCCTTAACCCCTTAACCCTTATCCTGCCCGCCC CGTCCATCCAGCTGCAGCAATATTTACACGCGGTGCACGAAGTTGCAATGAAATGTTGCTGTTGT TGGTTGTTGGTTGTAGCTGGTTGGTGTCGACAGATATGCCGAGGCATTAAAGTATAAAAATAAGA CCGTCTTCCTGCCCAAGCCCCCCGTTCCGCCCCCTTTTCTGCATCTCCTTCGTGGGAGCGGGCCG CACTTGAAATTGCATTTTCTCCTGGCCTGGCCTTGAAAATGCCTC Found at i:26087770 original size:8 final size:8 Alignment explanation
Indices: 26087757--26087772 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 26087747 AGAAAATACT 26087757 TAGTTAAA 1 TAGTTAAA 26087765 TAGTTAAA 1 TAGTTAAA 26087773 ACAGTTTATT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38 Consensus pattern (8 bp): TAGTTAAA Left flanking sequence: Indices 26087257 -- 26087756 TGCAGAAGGCTCTACTGCCTGGCATCCCCCCCTTTTCAGTTCCTTTCCCTTCACTGATCTTTCGT GGACCCCAGTGCTGCAGCCACCTCGTGGGGCAACTATTCATCAGTCATGCAATCGCCGCTGCCTG CGAGAATCCACTGCGATCCTCAATGACATCGAAATGTGCGGTCGGCATGCCGGGAACTTCGCGGC ACACAAGATGTGCGGCGCAGGAGGAGGAGCTGGGAGCCCCCGCCAGAAAACCTTGAAACGACAGC CGAAGGGCTGGTTCCTCCAACTCCCAGCTCCCAGCAGCTCGGCTCCCCACTCCCCCAAATCTTCG AGGGCTTCGAGTTTCCTTCGGTCGCGGGATCAGCACAAAGGCGGCGTGCAAAGTAAACAGCGGAA TCAGCGCACAGTGGTTGAAAATATAGGAAAAAATAGATATATTTTAAAGTGTTTGGTAAAAAAGT CTTCATCTTCTCTAAGCTGAAATGAATTTACACATAGAAAATACT Right flanking sequence: Indices 26087773 -- 26088272 ACAGTTTATTTCGACTAACTTTTAGTTTCAATATGAGCCCACTGTTCTCAAAGTAAGAACTTCGG GATCCCTGGGCACGACGCCTGGCCAGAACAAACATTGTTAGCACTAAATGTCGTCTTGGTCCTCC CCTTAACCCCTTAACCCCTTAACCCTTATCCTGCCCGCCCCGTCCATCCAGCTGCAGCAATATTT ACACGCGGTGCACGAAGTTGCAATGAAATGTTGCTGTTGTTGGTTGTTGGTTGTAGCTGGTTGGT GTCGACAGATATGCCGAGGCATTAAAGTATAAAAATAAGACCGTCTTCCTGCCCAAGCCCCCCGT TCCGCCCCCTTTTCTGCATCTCCTTCGTGGGAGCGGGCCGCACTTGAAATTGCATTTTCTCCTGG CCTGGCCTTGAAAATGCCTCCGTCCCTAACTTGCCAACTAACCAACTCACTGGGAAGTTGGCGAC TTCAAATGGCCAAATCAAGGAAAACAAAACAGCATTTTTGGCAAA Found at i:26087930 original size:7 final size:8 Alignment explanation
Indices: 26087901--26087927 Score: 54 Period size: 8 Copynumber: 3.4 Consensus size: 8 26087891 TCTTGGTCCT 26087901 CCCCTTAA 1 CCCCTTAA 26087909 CCCCTTAA 1 CCCCTTAA 26087917 CCCCTTAA 1 CCCCTTAA 26087925 CCC 1 CCC 26087928 TTATCCTGCC Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 19 1.00 ACGTcount: A:0.22, C:0.56, G:0.00, T:0.22 Consensus pattern (8 bp): CCCCTTAA Left flanking sequence: Indices 26087401 -- 26087900 GATCCTCAATGACATCGAAATGTGCGGTCGGCATGCCGGGAACTTCGCGGCACACAAGATGTGCG GCGCAGGAGGAGGAGCTGGGAGCCCCCGCCAGAAAACCTTGAAACGACAGCCGAAGGGCTGGTTC CTCCAACTCCCAGCTCCCAGCAGCTCGGCTCCCCACTCCCCCAAATCTTCGAGGGCTTCGAGTTT CCTTCGGTCGCGGGATCAGCACAAAGGCGGCGTGCAAAGTAAACAGCGGAATCAGCGCACAGTGG TTGAAAATATAGGAAAAAATAGATATATTTTAAAGTGTTTGGTAAAAAAGTCTTCATCTTCTCTA AGCTGAAATGAATTTACACATAGAAAATACTTAGTTAAATAGTTAAAACAGTTTATTTCGACTAA CTTTTAGTTTCAATATGAGCCCACTGTTCTCAAAGTAAGAACTTCGGGATCCCTGGGCACGACGC CTGGCCAGAACAAACATTGTTAGCACTAAATGTCGTCTTGGTCCT Right flanking sequence: Indices 26087928 -- 26088427 TTATCCTGCCCGCCCCGTCCATCCAGCTGCAGCAATATTTACACGCGGTGCACGAAGTTGCAATG AAATGTTGCTGTTGTTGGTTGTTGGTTGTAGCTGGTTGGTGTCGACAGATATGCCGAGGCATTAA AGTATAAAAATAAGACCGTCTTCCTGCCCAAGCCCCCCGTTCCGCCCCCTTTTCTGCATCTCCTT CGTGGGAGCGGGCCGCACTTGAAATTGCATTTTCTCCTGGCCTGGCCTTGAAAATGCCTCCGTCC CTAACTTGCCAACTAACCAACTCACTGGGAAGTTGGCGACTTCAAATGGCCAAATCAAGGAAAAC AAAACAGCATTTTTGGCAAATGCAAAAGTTTTAACCCAAGAAAGTTAATATAAATTATTTTTAAA TTGTTGTGTATTGATTGAAATACTCATTATTATATAGCGAACTATTTTCCTTGTGTTCTATATCC AATTCAAAGTTGATAGCAAACTGAAAGCCTTTCTGGGGTTAAGCG Found at i:26088015 original size:7 final size:7 Alignment explanation
Indices: 26088003--26088032 Score: 39 Period size: 7 Copynumber: 4.3 Consensus size: 7 26087993 AAATGTTGCT 26088003 GTTGTTG 1 GTTGTTG 26088010 GTTGTTG 1 GTTGTTG * 26088017 GTTGTAG 1 GTTGTTG * * 26088024 CTGGTTG 1 GTTGTTG 26088031 GT 1 GT 26088033 GTCGACAGAT Statistics Matches: 18, Mismatches: 5, Indels: 0 0.78 0.22 0.00 Matches are distributed among these distances: 7 18 1.00 ACGTcount: A:0.03, C:0.03, G:0.43, T:0.50 Consensus pattern (7 bp): GTTGTTG Left flanking sequence: Indices 26087503 -- 26088002 CTTGAAACGACAGCCGAAGGGCTGGTTCCTCCAACTCCCAGCTCCCAGCAGCTCGGCTCCCCACT CCCCCAAATCTTCGAGGGCTTCGAGTTTCCTTCGGTCGCGGGATCAGCACAAAGGCGGCGTGCAA AGTAAACAGCGGAATCAGCGCACAGTGGTTGAAAATATAGGAAAAAATAGATATATTTTAAAGTG TTTGGTAAAAAAGTCTTCATCTTCTCTAAGCTGAAATGAATTTACACATAGAAAATACTTAGTTA AATAGTTAAAACAGTTTATTTCGACTAACTTTTAGTTTCAATATGAGCCCACTGTTCTCAAAGTA AGAACTTCGGGATCCCTGGGCACGACGCCTGGCCAGAACAAACATTGTTAGCACTAAATGTCGTC TTGGTCCTCCCCTTAACCCCTTAACCCCTTAACCCTTATCCTGCCCGCCCCGTCCATCCAGCTGC AGCAATATTTACACGCGGTGCACGAAGTTGCAATGAAATGTTGCT Right flanking sequence: Indices 26088033 -- 26088532 GTCGACAGATATGCCGAGGCATTAAAGTATAAAAATAAGACCGTCTTCCTGCCCAAGCCCCCCGT TCCGCCCCCTTTTCTGCATCTCCTTCGTGGGAGCGGGCCGCACTTGAAATTGCATTTTCTCCTGG CCTGGCCTTGAAAATGCCTCCGTCCCTAACTTGCCAACTAACCAACTCACTGGGAAGTTGGCGAC TTCAAATGGCCAAATCAAGGAAAACAAAACAGCATTTTTGGCAAATGCAAAAGTTTTAACCCAAG AAAGTTAATATAAATTATTTTTAAATTGTTGTGTATTGATTGAAATACTCATTATTATATAGCGA ACTATTTTCCTTGTGTTCTATATCCAATTCAAAGTTGATAGCAAACTGAAAGCCTTTCTGGGGTT AAGCGTTTACATTCAATCCCATTTAAGAGACGCAAATGCTTCAATTTTATGTCCTCGCCTGCCAT CACACGACTCCGGCACTCAAACTGAAGGATGATGAAAGGTGGAAC Found at i:26089030 original size:7 final size:7 Alignment explanation
Indices: 26089014--26089040 Score: 47 Period size: 7 Copynumber: 3.9 Consensus size: 7 26089004 ATGCAACATG 26089014 GACTGGA 1 GACTGGA * 26089021 GACTGCA 1 GACTGGA 26089028 GACTGGA 1 GACTGGA 26089035 GACTGG 1 GACTGG 26089041 GGGCCGTGTC Statistics Matches: 18, Mismatches: 2, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 18 1.00 ACGTcount: A:0.26, C:0.19, G:0.41, T:0.15 Consensus pattern (7 bp): GACTGGA Left flanking sequence: Indices 26088514 -- 26089013 GGATGATGAAAGGTGGAACAGATCCAGATACCCCTCTTTCCGGGCATAAATCTTAAGTGTGCAGC TCTCTAATGTCGAATGTTTCGACGACTGCAGTCCTCTCGAATGAAGCCCACTAACCACTGACCCA CTCGAAAAAGGGAAACCGAGTGTACTTCTTGGCCAAAAGTTGAGGAATGGCCAGGAGGCGAGACC ACAACACAGACAGTCCGTTCACTGATGCACTTAGCCAAATAAATGGCTATAAAACTTTAAAGCCA CCAAAATATATTAGCATAACAAGCTACAGAGGTCACAATATGATTTTTCAAGTGTGCTCCGAATT CTGCAGTCTGTTTCTGTTGTTGGCTTTCCCTTCGGTTTTGGTTTCGGCCTGGTCATATCTGTTCC TGCCCAGGACCCTGTGGTCGCCTGCATTTTGGTCACGGCCTTTTGGCACTGCTGCCCCGACACTG CTGCACATTAATTATTGTTTATGTCCGGCCAGACAATGCAACATG Right flanking sequence: Indices 26089041 -- 26089540 GGGCCGTGTCAAGTTCAAGGGTTCATTAAAAAAAAAAAAAGAAGACCCAGACAATGGCTTTCTGG GCCTGCCCACGCCGGCAGAAGAGCAGACCCTTCTCTTCGCGACGCAGGCGAATGCAGAAACCCTC CACCGGATGCACCGCAGATAAATTCAGATGCAAGCCCTCGGATCATGGATTCTCTAACGATTTTC AGGTAGGTGCAGCTGAATCCCGAGCAACTCGAGCTGCCACTCCGTAATCTCAATTGTCGGCTTTG CATTGCTCGACGATACGTGTGACCCTAATCCGCATTGACATGTCGCTCAAATTAGATAATAAAGT TGTCCCCGCCTCGTGGGCTTGTCTCGCAACTCCACTACTCCCAATCCCAATCATCTATATCACAT GGTCGTGGTCGTGGTCGGGGTCGGGGTCTCTAGCTTTGGCTACGAGGAGATTGTCAGACGTGGCG GCTGCTCCTATGACAACAATGAGACAACGACCCGGGCAATGAACA Found at i:26090721 original size:7 final size:7 Alignment explanation
Indices: 26090709--26090735 Score: 54 Period size: 7 Copynumber: 3.9 Consensus size: 7 26090699 CGGAGACAGG 26090709 GACAGAA 1 GACAGAA 26090716 GACAGAA 1 GACAGAA 26090723 GACAGAA 1 GACAGAA 26090730 GACAGA 1 GACAGA 26090736 GGCTTTCATC Statistics Matches: 20, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 20 1.00 ACGTcount: A:0.56, C:0.15, G:0.30, T:0.00 Consensus pattern (7 bp): GACAGAA Left flanking sequence: Indices 26090209 -- 26090708 TTAAAAATTGTCTTGATACACAAGAAATTCAATACGAAGTCACATAAATAATACAGTGAGTACTT GAGTTGATATTAACTTTTAAACAAACCGCATACACTGTGCGCAAAACGTATGCACTGCCATCAAT TAACGTATCCATTCTTCAACTGAGAGAAGCTCTTTTGCGGCGATTCATGAATGAAGCGTTACCCT TTCTAGAAAAAAAAACCCTATGGGGTTAAGCACTCTTGCAGAAAAGAAAAGCTGCAGGAGAATCA TCATAGTAATCTTGATAAGCAAAAACGCACACACACACACACACACGAATGGCGGTGAGTGTGTG TTGGTGCATACGTGTATGCGTAATTAGCATGCACGCAAATAAATTGTTAGCAGTTGCGGGTTAAG CACCATGGACGTGGGCCGAGGGGGGTACGCAGGGGTCTGCCGCTCGATTTAACGAGCTGCGACTG CAACGGCGACGCAAGCTGCGACGGAGACGGAAAACCGGAGACAGG Right flanking sequence: Indices 26090736 -- 26091235 GGCTTTCATCAACGCGTCAGCCCCCTTACACTGGAAAAATGTCAATATTTATAGAATATTACCAC ATCTAAAATCATAAACACCATTTACAAGCATTTGTGTTTGAAAATATTATAGAACTTAGGTACTT ATAGGTACTTAGCTGTAGATTCACTGACCCCGAAAAGTATGCTGTGATTTTTCGAATATGTTATT ACACAATAGTAATGCTTAATCTTAAACTGCAGCATAGCAACAACTATTTCTTTCTGTTTTCCCTT TTCTTAACCCCCTGAGACCCACCACACGCATTTGAAGAATTATGAGGCGGCGGCAACGCACATTT CGCTGAAGGAGCCGCAACAGCTACAAATCTTCCCCCAATCCCCTTTCTTTGCCCTTTTCCCTTTT CCGCCCCCTTTTTGGGCCTCTTTTTCTCTAACCAGACGTGGTGCATGCAACGTAGCGTTTCAATT TATGCGAAGTGATTCGTCATGCGGTTAACTTTAGAATCCGCACAG Found at i:26090872 original size:10 final size:10 Alignment explanation
Indices: 26090857--26090876 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 26090847 TTATAGAACT 26090857 TAGGTACTTA 1 TAGGTACTTA 26090867 TAGGTACTTA 1 TAGGTACTTA 26090877 GCTGTAGATT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40 Consensus pattern (10 bp): TAGGTACTTA Left flanking sequence: Indices 26090357 -- 26090856 ACTGAGAGAAGCTCTTTTGCGGCGATTCATGAATGAAGCGTTACCCTTTCTAGAAAAAAAAACCC TATGGGGTTAAGCACTCTTGCAGAAAAGAAAAGCTGCAGGAGAATCATCATAGTAATCTTGATAA GCAAAAACGCACACACACACACACACACGAATGGCGGTGAGTGTGTGTTGGTGCATACGTGTATG CGTAATTAGCATGCACGCAAATAAATTGTTAGCAGTTGCGGGTTAAGCACCATGGACGTGGGCCG AGGGGGGTACGCAGGGGTCTGCCGCTCGATTTAACGAGCTGCGACTGCAACGGCGACGCAAGCTG CGACGGAGACGGAAAACCGGAGACAGGGACAGAAGACAGAAGACAGAAGACAGAGGCTTTCATCA ACGCGTCAGCCCCCTTACACTGGAAAAATGTCAATATTTATAGAATATTACCACATCTAAAATCA TAAACACCATTTACAAGCATTTGTGTTTGAAAATATTATAGAACT Right flanking sequence: Indices 26090877 -- 26091376 GCTGTAGATTCACTGACCCCGAAAAGTATGCTGTGATTTTTCGAATATGTTATTACACAATAGTA ATGCTTAATCTTAAACTGCAGCATAGCAACAACTATTTCTTTCTGTTTTCCCTTTTCTTAACCCC CTGAGACCCACCACACGCATTTGAAGAATTATGAGGCGGCGGCAACGCACATTTCGCTGAAGGAG CCGCAACAGCTACAAATCTTCCCCCAATCCCCTTTCTTTGCCCTTTTCCCTTTTCCGCCCCCTTT TTGGGCCTCTTTTTCTCTAACCAGACGTGGTGCATGCAACGTAGCGTTTCAATTTATGCGAAGTG ATTCGTCATGCGGTTAACTTTAGAATCCGCACAGCCAAAGAGCCATGCATTCTTCAGCTACAGTG AAGACTCGCTAATAGAATGAATATATAGATGGAAGGAAATTAAACTAAAATATAAGGCATTTAAT AACATAATTTAAAGTATTTATCTTTTATACAACAGCAAGTTAATA Found at i:26091125 original size:7 final size:7 Alignment explanation
Indices: 26091107--26091127 Score: 35 Period size: 7 Copynumber: 3.0 Consensus size: 7 26091097 AATCCCCTTT * 26091107 CTTTGCC 1 CTTTTCC 26091114 CTTTTCC 1 CTTTTCC 26091121 CTTTTCC 1 CTTTTCC 26091128 GCCCCCTTTT Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 7 13 1.00 ACGTcount: A:0.00, C:0.43, G:0.05, T:0.52 Consensus pattern (7 bp): CTTTTCC Left flanking sequence: Indices 26090607 -- 26091106 ACGTGGGCCGAGGGGGGTACGCAGGGGTCTGCCGCTCGATTTAACGAGCTGCGACTGCAACGGCG ACGCAAGCTGCGACGGAGACGGAAAACCGGAGACAGGGACAGAAGACAGAAGACAGAAGACAGAG GCTTTCATCAACGCGTCAGCCCCCTTACACTGGAAAAATGTCAATATTTATAGAATATTACCACA TCTAAAATCATAAACACCATTTACAAGCATTTGTGTTTGAAAATATTATAGAACTTAGGTACTTA TAGGTACTTAGCTGTAGATTCACTGACCCCGAAAAGTATGCTGTGATTTTTCGAATATGTTATTA CACAATAGTAATGCTTAATCTTAAACTGCAGCATAGCAACAACTATTTCTTTCTGTTTTCCCTTT TCTTAACCCCCTGAGACCCACCACACGCATTTGAAGAATTATGAGGCGGCGGCAACGCACATTTC GCTGAAGGAGCCGCAACAGCTACAAATCTTCCCCCAATCCCCTTT Right flanking sequence: Indices 26091128 -- 26091627 GCCCCCTTTTTGGGCCTCTTTTTCTCTAACCAGACGTGGTGCATGCAACGTAGCGTTTCAATTTA TGCGAAGTGATTCGTCATGCGGTTAACTTTAGAATCCGCACAGCCAAAGAGCCATGCATTCTTCA GCTACAGTGAAGACTCGCTAATAGAATGAATATATAGATGGAAGGAAATTAAACTAAAATATAAG GCATTTAATAACATAATTTAAAGTATTTATCTTTTATACAACAGCAAGTTAATAGCTTTTGATTG TGCAGTCTTCATAGCGATGTCCCACTGTCTTGTGGGGAGTTGTGTGGGCTGGCACATGAAGTGTT CGAGTGTCTGAGTGCCCCACCGTATGGTTGTTGCACGGATGGTGGTGCACGGTGGTGCGGTGCGA GTGAGTGGTGCTGTTTCTGTTTCTGATATTTGTGCTGGTGGTGCCGATGTTGCCTAGGCCCTCAG CCTCGTCCGCAGGCCATTTGCATATGACTTGGGCAACTACCCAAG Found at i:26094704 original size:7 final size:7 Alignment explanation
Indices: 26094692--26094707 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 26094682 TAAACGTTCT 26094692 ACAAGAA 1 ACAAGAA 26094699 ACAAGAA 1 ACAAGAA 26094706 AC 1 AC 26094708 GGTATCAGTT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.69, C:0.19, G:0.12, T:0.00 Consensus pattern (7 bp): ACAAGAA Left flanking sequence: Indices 26094192 -- 26094691 AATGTTTGATCAAAATGCAGAATGGCATGGGGCGTGCAGCTCGAGGGGGCAACTTCGGAGCAGCC AGGCGCATTAATCCAATTCCGATTGTCACAATGCATGCCCCCCACACAAGAGCGCCAGCGGATGT AACGGTCCGCAAGCAAATGACAAAAAATCGCATGACGCGAAGTTCGTGGAAAGTGCAACAAAGGT CCAACTACCCATTTCTCCTCCCGAATCCGCCGATTTTTTTTTAGCCTACTGCATCTTTTTTTTTG CCACAATAAAATTGCATGACAATGGAGGCGGGCCTGGGAGCAGGTTGCCCAAAACTGAGTCAACT GTTGTTTTATGGCCAGTAATTTCTGAACGCAGGGGTATGATGAACTACTACTAAATGGATATATT CCTCAAGAACCATGTAAATCTTAACGAGTAATGGCCTTTACCTCTGAAACATAACATAAATATCG CCAACAAGTTGACGCGAATTCTTCAGCATTCTCGCTAAACGTTCT Right flanking sequence: Indices 26094708 -- 26095207 GGTATCAGTTAGTCGAATAATCGTTTACTATACCGACTTGTTGCAACTCTGGCTGGAAAATTGTA AATTAGAGCTGGGGGATATCGGGAGGTGTGGTCTGGAGCCATGTAATTAACCTGCTAAACCGCTG TGACGCCAACCGCCCTGATATTCATGTCGCAGACTGTACATATACATATATACCAAAAAGAAAAG ATTGGGGGATACAGAACATCGGCCCTAGCAAACATTTTAAATTGCCATAATAAATGACCAAAAAT AAATAAATGCAATTTTAAGGCAGAGTTGTGGGCGGACGGACGGGTGGGTGGGGTTTTTTCCCGGT GGGAGGAGCTCCAACATTTTGTGGAGCTCTTTCTGTATACACATGCCATTTTGCTCTGTATTTGG GGGTTGCTTTCGGGTGAGTGTGTGTATTTCGCAGTCAGAACTTTCATTTTCATTTGCAAAAACCG AGAAAATATAGCAAAAACGGAAAAAACAAAGGAAAATCAGCGGCG Found at i:26095746 original size:8 final size:8 Alignment explanation
Indices: 26095733--26095748 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 26095723 AAATCTACGC 26095733 AACAAAAT 1 AACAAAAT 26095741 AACAAAAT 1 AACAAAAT 26095749 CGCCTAACAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.75, C:0.12, G:0.00, T:0.12 Consensus pattern (8 bp): AACAAAAT Left flanking sequence: Indices 26095233 -- 26095732 TCGATATATTTTTTAGTTGAGAGGGAGAAATTGGTTTAAAAAATATCTACAAAATTCCTATGGAT CCAGTTGGAGTTGGAATTCTAGCATAAAAAAGTCATCCAGGCATACCAACAGATTAAAAAATAAT ATTTCTATTTATTCCGCCAGCTCTTATTGATTTTGAACATAGCTAAATAACAAATAATAATACAT TTTTATATCGTCTAACACCTTGAAAGTTGTGTAATGCCATAGTGTCATTCTGTTTTTTATACTCT AACATCTTGTCACTATTATCCCTCGCTTTTCCTGGCCTTCACTTTCATTTTATGTCCATAAATGA TTGTGTTCTTAACTTTATTAAGTCGTGTAAGCGTCTTATGGCAAAGCAAACACGATTTTGTAGCC AACCCCCACCCACCCCAAGAGGAATTTTATGAGTCACTCGGACGAGCGCAGAAATAAATACGAGC ATAAATATGAGCATAAGTATGTTGCCGCAAAGATGAAATCTACGC Right flanking sequence: Indices 26095749 -- 26096248 CGCCTAACAAAGTGCGCAGTAAAAATAAACAGAACCAGGCGATATAATATGCCGATAAGTCGGAA GATCCCCACCAGAAGTTTCTAGTTTCCAGCGATAAAGTGCACCGAAAAAATAGGATTGGAATTTT ATCCTTTTATCGATTTTATTTCGATTAGTTTAAAAACTTCGATGTATTTCTGTATTTTTTATTAT TTAACACTGTATATTTACAATATTAACAAATATTTTATTTAACACTATAGTTTTTAGATGTGGAA AACTCTTAACAAGAAACACCTTGTGTCTCCCACTTTTACTCTTTTCCTTCTCCCACTTTTACTTC TCCCGCCAACTCACTTTTCTTCTACCACCCACACACACACACACCCATGAAAACGCGACCTCGGA TAAGGTAGAGAATGTTCTCAACTTCGACAAAACTCCGCAGAAAAGGAAAGAAATGTGGGAGAGGG AAACGGTTGGCTAAGTGGCAGGGGGACGGGGGAAGGGAGCTAGTG Found at i:26095897 original size:9 final size:8 Alignment explanation
Indices: 26095874--26095897 Score: 32 Period size: 8 Copynumber: 2.9 Consensus size: 8 26095864 TAGGATTGGA 26095874 ATTTTATC 1 ATTTTATC * 26095882 CTTTTATC 1 ATTTTATC 26095890 GATTTTAT 1 -ATTTTAT 26095898 TTCGATTAGT Statistics Matches: 13, Mismatches: 2, Indels: 1 0.81 0.12 0.06 Matches are distributed among these distances: 8 7 0.54 9 6 0.46 ACGTcount: A:0.21, C:0.12, G:0.04, T:0.62 Consensus pattern (8 bp): ATTTTATC Left flanking sequence: Indices 26095374 -- 26095873 TTCCGCCAGCTCTTATTGATTTTGAACATAGCTAAATAACAAATAATAATACATTTTTATATCGT CTAACACCTTGAAAGTTGTGTAATGCCATAGTGTCATTCTGTTTTTTATACTCTAACATCTTGTC ACTATTATCCCTCGCTTTTCCTGGCCTTCACTTTCATTTTATGTCCATAAATGATTGTGTTCTTA ACTTTATTAAGTCGTGTAAGCGTCTTATGGCAAAGCAAACACGATTTTGTAGCCAACCCCCACCC ACCCCAAGAGGAATTTTATGAGTCACTCGGACGAGCGCAGAAATAAATACGAGCATAAATATGAG CATAAGTATGTTGCCGCAAAGATGAAATCTACGCAACAAAATAACAAAATCGCCTAACAAAGTGC GCAGTAAAAATAAACAGAACCAGGCGATATAATATGCCGATAAGTCGGAAGATCCCCACCAGAAG TTTCTAGTTTCCAGCGATAAAGTGCACCGAAAAAATAGGATTGGA Right flanking sequence: Indices 26095898 -- 26096397 TTCGATTAGTTTAAAAACTTCGATGTATTTCTGTATTTTTTATTATTTAACACTGTATATTTACA ATATTAACAAATATTTTATTTAACACTATAGTTTTTAGATGTGGAAAACTCTTAACAAGAAACAC CTTGTGTCTCCCACTTTTACTCTTTTCCTTCTCCCACTTTTACTTCTCCCGCCAACTCACTTTTC TTCTACCACCCACACACACACACACCCATGAAAACGCGACCTCGGATAAGGTAGAGAATGTTCTC AACTTCGACAAAACTCCGCAGAAAAGGAAAGAAATGTGGGAGAGGGAAACGGTTGGCTAAGTGGC AGGGGGACGGGGGAAGGGAGCTAGTGAGAACCGAGCGAAGCCAAATGAATGCGATGAAAAGGAAA CCCAAGAGGCGGAAAACAACGCAAAAGCCAGCCTAGGAAAATGGAAAAATGTTTTATGTGCAAAT ATACATACATACACTCATACAAGCAGAAAGCGAGCATACCAATAC Found at i:26095946 original size:7 final size:7 Alignment explanation
Indices: 26095931--26095946 Score: 25 Period size: 7 Copynumber: 2.3 Consensus size: 7 26095921 TGTATTTCTG * 26095931 TATTTTT 1 TATTATT 26095938 TATTATT 1 TATTATT 26095945 TA 1 TA 26095947 ACACTGTATA Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75 Consensus pattern (7 bp): TATTATT Left flanking sequence: Indices 26095431 -- 26095930 TATATCGTCTAACACCTTGAAAGTTGTGTAATGCCATAGTGTCATTCTGTTTTTTATACTCTAAC ATCTTGTCACTATTATCCCTCGCTTTTCCTGGCCTTCACTTTCATTTTATGTCCATAAATGATTG TGTTCTTAACTTTATTAAGTCGTGTAAGCGTCTTATGGCAAAGCAAACACGATTTTGTAGCCAAC CCCCACCCACCCCAAGAGGAATTTTATGAGTCACTCGGACGAGCGCAGAAATAAATACGAGCATA AATATGAGCATAAGTATGTTGCCGCAAAGATGAAATCTACGCAACAAAATAACAAAATCGCCTAA CAAAGTGCGCAGTAAAAATAAACAGAACCAGGCGATATAATATGCCGATAAGTCGGAAGATCCCC ACCAGAAGTTTCTAGTTTCCAGCGATAAAGTGCACCGAAAAAATAGGATTGGAATTTTATCCTTT TATCGATTTTATTTCGATTAGTTTAAAAACTTCGATGTATTTCTG Right flanking sequence: Indices 26095947 -- 26096446 ACACTGTATATTTACAATATTAACAAATATTTTATTTAACACTATAGTTTTTAGATGTGGAAAAC TCTTAACAAGAAACACCTTGTGTCTCCCACTTTTACTCTTTTCCTTCTCCCACTTTTACTTCTCC CGCCAACTCACTTTTCTTCTACCACCCACACACACACACACCCATGAAAACGCGACCTCGGATAA GGTAGAGAATGTTCTCAACTTCGACAAAACTCCGCAGAAAAGGAAAGAAATGTGGGAGAGGGAAA CGGTTGGCTAAGTGGCAGGGGGACGGGGGAAGGGAGCTAGTGAGAACCGAGCGAAGCCAAATGAA TGCGATGAAAAGGAAACCCAAGAGGCGGAAAACAACGCAAAAGCCAGCCTAGGAAAATGGAAAAA TGTTTTATGTGCAAATATACATACATACACTCATACAAGCAGAAAGCGAGCATACCAATACAGTT GCGGGCAACAGAATATAGTCTATCCTAAAATCAAATTACAAATGC Found at i:26095972 original size:9 final size:10 Alignment explanation
Indices: 26095954--26095977 Score: 34 Period size: 9 Copynumber: 2.5 Consensus size: 10 26095944 TTAACACTGT * 26095954 ATATTTAC-A 1 ATATTAACAA 26095963 ATATTAACAA 1 ATATTAACAA 26095973 ATATT 1 ATATT 26095978 TTATTTAACA Statistics Matches: 13, Mismatches: 1, Indels: 1 0.87 0.07 0.07 Matches are distributed among these distances: 9 7 0.54 10 6 0.46 ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42 Consensus pattern (10 bp): ATATTAACAA Left flanking sequence: Indices 26095454 -- 26095953 TTGTGTAATGCCATAGTGTCATTCTGTTTTTTATACTCTAACATCTTGTCACTATTATCCCTCGC TTTTCCTGGCCTTCACTTTCATTTTATGTCCATAAATGATTGTGTTCTTAACTTTATTAAGTCGT GTAAGCGTCTTATGGCAAAGCAAACACGATTTTGTAGCCAACCCCCACCCACCCCAAGAGGAATT TTATGAGTCACTCGGACGAGCGCAGAAATAAATACGAGCATAAATATGAGCATAAGTATGTTGCC GCAAAGATGAAATCTACGCAACAAAATAACAAAATCGCCTAACAAAGTGCGCAGTAAAAATAAAC AGAACCAGGCGATATAATATGCCGATAAGTCGGAAGATCCCCACCAGAAGTTTCTAGTTTCCAGC GATAAAGTGCACCGAAAAAATAGGATTGGAATTTTATCCTTTTATCGATTTTATTTCGATTAGTT TAAAAACTTCGATGTATTTCTGTATTTTTTATTATTTAACACTGT Right flanking sequence: Indices 26095978 -- 26096477 TTATTTAACACTATAGTTTTTAGATGTGGAAAACTCTTAACAAGAAACACCTTGTGTCTCCCACT TTTACTCTTTTCCTTCTCCCACTTTTACTTCTCCCGCCAACTCACTTTTCTTCTACCACCCACAC ACACACACACCCATGAAAACGCGACCTCGGATAAGGTAGAGAATGTTCTCAACTTCGACAAAACT CCGCAGAAAAGGAAAGAAATGTGGGAGAGGGAAACGGTTGGCTAAGTGGCAGGGGGACGGGGGAA GGGAGCTAGTGAGAACCGAGCGAAGCCAAATGAATGCGATGAAAAGGAAACCCAAGAGGCGGAAA ACAACGCAAAAGCCAGCCTAGGAAAATGGAAAAATGTTTTATGTGCAAATATACATACATACACT CATACAAGCAGAAAGCGAGCATACCAATACAGTTGCGGGCAACAGAATATAGTCTATCCTAAAAT CAAATTACAAATGCAAAATAAAATAAAGTAAATAAATGAAATAAA Found at i:26096236 original size:7 final size:7 Alignment explanation
Indices: 26096223--26096240 Score: 29 Period size: 7 Copynumber: 2.6 Consensus size: 7 26096213 GCTAAGTGGC 26096223 AGGGGGA 1 AGGGGGA * 26096230 CGGGGGA 1 AGGGGGA 26096237 AGGG 1 AGGG 26096241 AGCTAGTGAG Statistics Matches: 9, Mismatches: 2, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.22, C:0.06, G:0.72, T:0.00 Consensus pattern (7 bp): AGGGGGA Left flanking sequence: Indices 26095723 -- 26096222 AAATCTACGCAACAAAATAACAAAATCGCCTAACAAAGTGCGCAGTAAAAATAAACAGAACCAGG CGATATAATATGCCGATAAGTCGGAAGATCCCCACCAGAAGTTTCTAGTTTCCAGCGATAAAGTG CACCGAAAAAATAGGATTGGAATTTTATCCTTTTATCGATTTTATTTCGATTAGTTTAAAAACTT CGATGTATTTCTGTATTTTTTATTATTTAACACTGTATATTTACAATATTAACAAATATTTTATT TAACACTATAGTTTTTAGATGTGGAAAACTCTTAACAAGAAACACCTTGTGTCTCCCACTTTTAC TCTTTTCCTTCTCCCACTTTTACTTCTCCCGCCAACTCACTTTTCTTCTACCACCCACACACACA CACACCCATGAAAACGCGACCTCGGATAAGGTAGAGAATGTTCTCAACTTCGACAAAACTCCGCA GAAAAGGAAAGAAATGTGGGAGAGGGAAACGGTTGGCTAAGTGGC Right flanking sequence: Indices 26096241 -- 26096740 AGCTAGTGAGAACCGAGCGAAGCCAAATGAATGCGATGAAAAGGAAACCCAAGAGGCGGAAAACA ACGCAAAAGCCAGCCTAGGAAAATGGAAAAATGTTTTATGTGCAAATATACATACATACACTCAT ACAAGCAGAAAGCGAGCATACCAATACAGTTGCGGGCAACAGAATATAGTCTATCCTAAAATCAA ATTACAAATGCAAAATAAAATAAAGTAAATAAATGAAATAAATATTCCTATTAACTCAAACACCA TTGTATTCCAGAATTCTCCACGCACACAAACAAGGCTCCACAGGAACACGGGGATGGGAAGACGG GAGAAGGAAGAAGAGACAGCAGTTTCCATTTGACGTACTGACGTAATGCGGCAAATGCTGCGCCA AACTCCAATTTATCTCTGTCCCTCTCCCGCTCTGCGTGCACACATAAAACCTGCCCACACCGCCC ACTCCTCCCGCTCTCTTTCGCTCCACTTCGACTCAATTCGTGGCC Found at