TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_4 assembled 2004-3-17 md5checksum:7c705dd3e2c1b9917a1d4035df4831cb Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 1281640 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Warning! 100 characters in sequence are not A, C, G, or T Found at i: i:980574 original size:7 final size:8 Alignment explanation
Indices: 980558--980575 Score: 29 Period size: 7 Copynumber: 2.4 Consensus size: 8 980548 GAGAGCGGAG 980558 AGCGCTAC 1 AGCGCTAC 980566 AGCGC-AC 1 AGCGCTAC 980573 AGC 1 AGC 980576 TCTTTTCTAC Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 7 5 0.50 8 5 0.50 ACGTcount: A:0.28, C:0.39, G:0.28, T:0.06 Consensus pattern (8 bp): AGCGCTAC Left flanking sequence: Indices 980058 -- 980557 TGTTCCACACAATGTCATGGTCTATCAAAATCTATAGAGGTTTAGAGTTAAATACATAGCTATTT TTATAGTCATAGTCCCCTTTTTTTGAGAATATACGATAGTTTTGGTTATGGTCTAAGAGTGCGTC ACCCAATTTCTATATGCCGTCCTGCATTGACCTAACGGTCTCTACCCACCCATTAATGAAGATAA TGACGGCGGTATCGTAAGGATGGCAAAATAGGGATGGTATGGCACAGTACGAAGAAATGTGGTAC AAATAAAGCCATATGTCGAGTTATTAAAAATCAAAGTTTTTCATATTTTTCGTATGGTGAGAATT TGTCGTCACATACCATGTCCAAGGGAGTAATAATTTGAAATAAATTGTTAAAGATTATCATACCA AAGACATTAGAATAACAGGATGCGTAACGTCTTACGATTTTTTGGCACACGGTTTTTTCGCCGTG GCTCCAGGCCCCCTCGAATTTTTGTTCGAGAGCGAGAGAGCGGAG Right flanking sequence: Indices 980576 -- 981075 TCTTTTCTACGCATACAGTGATAGCAGACAACTGTGTGTGTGCACACGTATCCATGCATTGTAAA TTTGACAATATATGTACATATGTATGCCCTTCACCTTAGAAGTTCATAGACATTAAATCTATATT ATTTTTGATCAATTGGCACCGTGCGAAAAATTCTTGTTTTGCATTGCCTTAACGTTATTATTATT TAAATATAGCTTAGAAATAGTAAAAGCCGAATCATAATGTCACAAAATAAATTTTAAAAATGACT GAATGAAATGAAATGAATGATTCAGCTTGCGACTTGTGAAAAATTAATAAGACATTGTTGAGTGC TTTCGTCTGCACTTCGTGCCTCAAGATATACTTCCAATAAACAGTTTTCATATTTTTGTTTATGT TATAAATTTGTATTTTCTACTACGTATTATTTTTATGGAATATTTATTTCTCAATATAATGTCTT CTATTTGGGAAATTTATGTTTTAAATTACAGTAGTTATACTTCCT Found at i:981813 original size:9 final size:9 Alignment explanation
Indices: 981796--981813 Score: 29 Period size: 9 Copynumber: 2.0 Consensus size: 9 981786 TCCTACACCT * 981796 TTCCTATCG 1 TTCCCATCG 981805 TTCCCATCG 1 TTCCCATCG 981814 ATATGCTGAG Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 8 1.00 ACGTcount: A:0.11, C:0.39, G:0.11, T:0.39 Consensus pattern (9 bp): TTCCCATCG Left flanking sequence: Indices 981296 -- 981795 TCAATCAGAATTGATTTCGGCCCGAAAATCGTTTTCTATCACAACACGCACACATATACGCGTTC TGGTCTCTTGCTTTTACTTACACAAGCAAGCAAATTCTATTTTTAGATTTCTTACACTCTCATTG TAAGCGAGCGGACAGACAGCAATTTTGGCCGTCACCAAAAAAGTGGCTGCATAGTGCCAAACCAA TGTATGGCCGTTACGCATCTTGTTATTCTAGTGTCTTTTGTCAAACCAATGTATGGCCGTTACGC ATTTTGTTATTCTAGTGTCTTTGATCATACCACCTGGCCATCAGTCATGGTGTGGAGGGAGGGGG TCAGATAGTAGAATTCGTCTTCCAACACTGGAAACTCTTAGTGAAAGCACCTATTAAAGACCTTG GAAGTATGAAACAGAAAGAAAAAAGCGTTTCCTACCCTATAAAGTATATATATACATATATGATC AGGATCACTAGCCGAGTCGAACTGGCTACTGCCACTCCTACACCT Right flanking sequence: Indices 981814 -- 982313 ATATGCTGAGTATCGAGTATCTGATCTGTCGAAAAATACGGCTGATTTTGTTGCTTAATAATTAT TAAACATGCATTTCTACGGAATGTATTGTAATTTTATACCTGATGTTTTGGTATTTTTTTCCAGT TCTGAAAATTTCTATCGATTTGCCAACCAACTTCTTGCCACGCCCACTTTATACCCACAAAACTC CGAAAACCACACTTTTGAACAATTTTTAAACTTTAACAAAATCTATCCGCAAATTATGAAATTTC GTGTTAGCATTTCCACTAGATGAATAGTCGGGGAACTCGAATGAGTTCCTCCTCTCTTGTTAAAG TTATAATTTTTCAAAGACCTTGAAAATACTGGAACTGTTAGACTTGCAATGTAGAGTAAGAACAA GAAATCGACTTTAAAATACCGTACACAGGCGAACAGAGATGAGATTTGACTTACCATTAAAATTC CGCTGCTAGCGCATCTTTTGCTTGATGGCCCCGTTTTTCTAAACG Found at i:981833 original size:7 final size:7 Alignment explanation
Indices: 981821--981834 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 981811 TCGATATGCT 981821 GAGTATC 1 GAGTATC 981828 GAGTATC 1 GAGTATC 981835 TGATCTGTCG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29 Consensus pattern (7 bp): GAGTATC Left flanking sequence: Indices 981321 -- 981820 AAATCGTTTTCTATCACAACACGCACACATATACGCGTTCTGGTCTCTTGCTTTTACTTACACAA GCAAGCAAATTCTATTTTTAGATTTCTTACACTCTCATTGTAAGCGAGCGGACAGACAGCAATTT TGGCCGTCACCAAAAAAGTGGCTGCATAGTGCCAAACCAATGTATGGCCGTTACGCATCTTGTTA TTCTAGTGTCTTTTGTCAAACCAATGTATGGCCGTTACGCATTTTGTTATTCTAGTGTCTTTGAT CATACCACCTGGCCATCAGTCATGGTGTGGAGGGAGGGGGTCAGATAGTAGAATTCGTCTTCCAA CACTGGAAACTCTTAGTGAAAGCACCTATTAAAGACCTTGGAAGTATGAAACAGAAAGAAAAAAG CGTTTCCTACCCTATAAAGTATATATATACATATATGATCAGGATCACTAGCCGAGTCGAACTGG CTACTGCCACTCCTACACCTTTCCTATCGTTCCCATCGATATGCT Right flanking sequence: Indices 981835 -- 982334 TGATCTGTCGAAAAATACGGCTGATTTTGTTGCTTAATAATTATTAAACATGCATTTCTACGGAA TGTATTGTAATTTTATACCTGATGTTTTGGTATTTTTTTCCAGTTCTGAAAATTTCTATCGATTT GCCAACCAACTTCTTGCCACGCCCACTTTATACCCACAAAACTCCGAAAACCACACTTTTGAACA ATTTTTAAACTTTAACAAAATCTATCCGCAAATTATGAAATTTCGTGTTAGCATTTCCACTAGAT GAATAGTCGGGGAACTCGAATGAGTTCCTCCTCTCTTGTTAAAGTTATAATTTTTCAAAGACCTT GAAAATACTGGAACTGTTAGACTTGCAATGTAGAGTAAGAACAAGAAATCGACTTTAAAATACCG TACACAGGCGAACAGAGATGAGATTTGACTTACCATTAAAATTCCGCTGCTAGCGCATCTTTTGC TTGATGGCCCCGTTTTTCTAAACGAAGTATATGTACATAGCTTTC Found at i:982525 original size:7 final size:7 Alignment explanation
Indices: 982513--982527 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 982503 CTTTTGAAAA 982513 TTTTTTG 1 TTTTTTG 982520 TTTTTTG 1 TTTTTTG 982527 T 1 T 982528 GATCAATTAT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87 Consensus pattern (7 bp): TTTTTTG Left flanking sequence: Indices 982013 -- 982512 AACCACACTTTTGAACAATTTTTAAACTTTAACAAAATCTATCCGCAAATTATGAAATTTCGTGT TAGCATTTCCACTAGATGAATAGTCGGGGAACTCGAATGAGTTCCTCCTCTCTTGTTAAAGTTAT AATTTTTCAAAGACCTTGAAAATACTGGAACTGTTAGACTTGCAATGTAGAGTAAGAACAAGAAA TCGACTTTAAAATACCGTACACAGGCGAACAGAGATGAGATTTGACTTACCATTAAAATTCCGCT GCTAGCGCATCTTTTGCTTGATGGCCCCGTTTTTCTAAACGAAGTATATGTACATAGCTTTCTGT TTTGTTTTCAATAAAGTTTTATTTATTCGGTTCTGAAGGCTAGCCTTTATTTAAATTAAACATAT ATGAAGCAATTTGAAATTATATTTTTGTATGTATTATAATATTTCAATTTATGTAGGCACCGTTA AAAACAATTATAAAATAAATTTTATTTTTCCAGTGCTTTTGAAAA Right flanking sequence: Indices 982528 -- 983027 GATCAATTATTTTTATTGAGCATAGCCTTAAGATGTCTTTGATCAATAAGATTGGTGATTTTTCT TACTTGTAAGTGATTTTATATTTCTTCAAAAACTAGACTAGACTATTTTTATTTCCAGAAGTTTG ATAACAACATAATGGTTCAATGTTGCCGACTGGATAACTCCACTTATTGGACTCCGCCACAGAGT TGGTGGTCAGGGATACCACCTGCTGAGCTTGTTGCGGACGAAGAGAGTGCAATTGTGATTTTAAA AATACAGGGAAGGCAACATGCTGCTGAATTTGCAAGCTGGATGATAATTCATTAGCAGCTAAGCC CTTTATAAGCGATTTGTCACTAACACATTTTGATACCGTTCGCTTGGAAAGACATCGATCTTTTT GAAGTTTGTTTCTTTTTCGTCGAGCTAAAATTTGTAAATTTCCATTTATTCCTTTTGCGTCCTGA AAAGAAAGATTTAAAAAATAATATGTTGTACACAGAAATATATCT Found at i:985931 original size:8 final size:8 Alignment explanation
Indices: 985912--985931 Score: 26 Period size: 8 Copynumber: 2.5 Consensus size: 8 985902 AGCTTTTATT * 985912 ATTAAAAT 1 ATTAAAAA * 985920 ATTACAAA 1 ATTAAAAA 985928 ATTA 1 ATTA 985932 TACAATTTAT Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35 Consensus pattern (8 bp): ATTAAAAA Left flanking sequence: Indices 985412 -- 985911 CGTACCTGTCATTAGTTGTTATGCGATGTGAGTGAAAAATAAATTTATTGGGCGAGAAAAACATT CCGCAATATGAACACTTAATGCACTTAGCCCTTGATGAGTTGTAACGCGAGGGTAGAAAGGATCC GCGGCAGCCCCAAGCACATTTGTGCTGGACGTTAAACGCAAAGTCGTCAGGTAGTCGTGGTGGTG TATTGTCGCCCAAGAAACTTTTGCATAGACGCTCCGCTTCCCTGCGGGTAATCATGCCACATCGT CGGGAACTCACTGGCATGGCGCCAGCTCTTCTCAATATTTCCAATTGCACGGGTGTACATTGTAC ACAAGTAATGCCAAGAGCAACTCTCCTGTTGTGTATCTCGTTGTAACTGAATTGTTTTAGTAATG TATTTGAAATTTGCGCCAAGCAAAGGCGCTCTTGACCTTCAATGTGCAGGGATACAATCTGCACT CCGTACAGCAAAACGGAGCTTACCTACAAATATGAAGCTTTTATT Right flanking sequence: Indices 985932 -- 986431 TACAATTTATTTTATGTTAAATATGAACAGGTAAAAAGTATACATATTCCTGATCAGGACCATTT ACCCAGTCGATTTGGGCACGTCCGTCCGTTTGTCTATAAAACTATAAAAGCATAAAGTTCAGATT ATGAATGGACGCCCCCATAAGACCCAAAAACCTTATTAGATTAGCGCCCCATACTTAAAAATAAT TTTATTTTTAAGTTTAGAAGTAAGTTTTTAAGGGAAGGATGTACACAAAATGTAAGGTCATATTA CCTTAAGTGTAAGCCATGCATTTTTGTATGTTGACGGTGCGATGAAAGGGAAATCTGAAGTGCTA GGAAGTTTAATTTGAAATGAAATCATTGAAGTCGTTTTCAACGAAAATATGAAAAATTCCATAAT TCGTTATTTATGGTATTGGGGCAAAACACTTTTTAAAACCAAAGATTGAAAATTAGTTTTTATCT ACATTCTACACAAGTCTGTAACTGTAGGAGTTCAGGGATATTGCT Found at i:986043 original size:8 final size:8 Alignment explanation
Indices: 986030--986045 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 986020 GTCCGTTTGT 986030 CTATAAAA 1 CTATAAAA 986038 CTATAAAA 1 CTATAAAA 986046 GCATAAAGTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.12, G:0.00, T:0.25 Consensus pattern (8 bp): CTATAAAA Left flanking sequence: Indices 985530 -- 986029 TAGAAAGGATCCGCGGCAGCCCCAAGCACATTTGTGCTGGACGTTAAACGCAAAGTCGTCAGGTA GTCGTGGTGGTGTATTGTCGCCCAAGAAACTTTTGCATAGACGCTCCGCTTCCCTGCGGGTAATC ATGCCACATCGTCGGGAACTCACTGGCATGGCGCCAGCTCTTCTCAATATTTCCAATTGCACGGG TGTACATTGTACACAAGTAATGCCAAGAGCAACTCTCCTGTTGTGTATCTCGTTGTAACTGAATT GTTTTAGTAATGTATTTGAAATTTGCGCCAAGCAAAGGCGCTCTTGACCTTCAATGTGCAGGGAT ACAATCTGCACTCCGTACAGCAAAACGGAGCTTACCTACAAATATGAAGCTTTTATTATTAAAAT ATTACAAAATTATACAATTTATTTTATGTTAAATATGAACAGGTAAAAAGTATACATATTCCTGA TCAGGACCATTTACCCAGTCGATTTGGGCACGTCCGTCCGTTTGT Right flanking sequence: Indices 986046 -- 986545 GCATAAAGTTCAGATTATGAATGGACGCCCCCATAAGACCCAAAAACCTTATTAGATTAGCGCCC CATACTTAAAAATAATTTTATTTTTAAGTTTAGAAGTAAGTTTTTAAGGGAAGGATGTACACAAA ATGTAAGGTCATATTACCTTAAGTGTAAGCCATGCATTTTTGTATGTTGACGGTGCGATGAAAGG GAAATCTGAAGTGCTAGGAAGTTTAATTTGAAATGAAATCATTGAAGTCGTTTTCAACGAAAATA TGAAAAATTCCATAATTCGTTATTTATGGTATTGGGGCAAAACACTTTTTAAAACCAAAGATTGA AAATTAGTTTTTATCTACATTCTACACAAGTCTGTAACTGTAGGAGTTCAGGGATATTGCTCTAT CGATCTTAACTATTAATATATGTAATATATAAATATTAATTATTTATTTTTTAGGGTTTTTTTTA ATGTTGGAAAACCAAAATATCTTATACAGAGGTATTTTGCATTAT Found at i:986051 original size:8 final size:8 Alignment explanation
Indices: 986032--986052 Score: 28 Period size: 8 Copynumber: 2.6 Consensus size: 8 986022 CCGTTTGTCT * 986032 ATAAAACT 1 ATAAAACC * 986040 ATAAAAGC 1 ATAAAACC 986048 ATAAA 1 ATAAA 986053 GTTCAGATTA Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.67, C:0.10, G:0.05, T:0.19 Consensus pattern (8 bp): ATAAAACC Left flanking sequence: Indices 985532 -- 986031 GAAAGGATCCGCGGCAGCCCCAAGCACATTTGTGCTGGACGTTAAACGCAAAGTCGTCAGGTAGT CGTGGTGGTGTATTGTCGCCCAAGAAACTTTTGCATAGACGCTCCGCTTCCCTGCGGGTAATCAT GCCACATCGTCGGGAACTCACTGGCATGGCGCCAGCTCTTCTCAATATTTCCAATTGCACGGGTG TACATTGTACACAAGTAATGCCAAGAGCAACTCTCCTGTTGTGTATCTCGTTGTAACTGAATTGT TTTAGTAATGTATTTGAAATTTGCGCCAAGCAAAGGCGCTCTTGACCTTCAATGTGCAGGGATAC AATCTGCACTCCGTACAGCAAAACGGAGCTTACCTACAAATATGAAGCTTTTATTATTAAAATAT TACAAAATTATACAATTTATTTTATGTTAAATATGAACAGGTAAAAAGTATACATATTCCTGATC AGGACCATTTACCCAGTCGATTTGGGCACGTCCGTCCGTTTGTCT Right flanking sequence: Indices 986053 -- 986552 GTTCAGATTATGAATGGACGCCCCCATAAGACCCAAAAACCTTATTAGATTAGCGCCCCATACTT AAAAATAATTTTATTTTTAAGTTTAGAAGTAAGTTTTTAAGGGAAGGATGTACACAAAATGTAAG GTCATATTACCTTAAGTGTAAGCCATGCATTTTTGTATGTTGACGGTGCGATGAAAGGGAAATCT GAAGTGCTAGGAAGTTTAATTTGAAATGAAATCATTGAAGTCGTTTTCAACGAAAATATGAAAAA TTCCATAATTCGTTATTTATGGTATTGGGGCAAAACACTTTTTAAAACCAAAGATTGAAAATTAG TTTTTATCTACATTCTACACAAGTCTGTAACTGTAGGAGTTCAGGGATATTGCTCTATCGATCTT AACTATTAATATATGTAATATATAAATATTAATTATTTATTTTTTAGGGTTTTTTTTAATGTTGG AAAACCAAAATATCTTATACAGAGGTATTTTGCATTATTTGAGTA Found at i:986479 original size:7 final size:7 Alignment explanation
Indices: 986441--986483 Score: 31 Period size: 7 Copynumber: 5.9 Consensus size: 7 986431 TCTATCGATC * 986441 TTAACTA 1 TTAATTA 986448 TTAATATA 1 TTAAT-TA 986456 TGTAA-TA 1 T-TAATTA * 986463 TATAAATA 1 T-TAATTA 986471 TTAATTA 1 TTAATTA * 986478 TTTATT 1 TTAATT 986484 TTTTAGGGTT Statistics Matches: 29, Mismatches: 4, Indels: 6 0.74 0.10 0.15 Matches are distributed among these distances: 7 20 0.69 8 6 0.21 9 3 0.10 ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51 Consensus pattern (7 bp): TTAATTA Left flanking sequence: Indices 985941 -- 986440 TTTTATGTTAAATATGAACAGGTAAAAAGTATACATATTCCTGATCAGGACCATTTACCCAGTCG ATTTGGGCACGTCCGTCCGTTTGTCTATAAAACTATAAAAGCATAAAGTTCAGATTATGAATGGA CGCCCCCATAAGACCCAAAAACCTTATTAGATTAGCGCCCCATACTTAAAAATAATTTTATTTTT AAGTTTAGAAGTAAGTTTTTAAGGGAAGGATGTACACAAAATGTAAGGTCATATTACCTTAAGTG TAAGCCATGCATTTTTGTATGTTGACGGTGCGATGAAAGGGAAATCTGAAGTGCTAGGAAGTTTA ATTTGAAATGAAATCATTGAAGTCGTTTTCAACGAAAATATGAAAAATTCCATAATTCGTTATTT ATGGTATTGGGGCAAAACACTTTTTAAAACCAAAGATTGAAAATTAGTTTTTATCTACATTCTAC ACAAGTCTGTAACTGTAGGAGTTCAGGGATATTGCTCTATCGATC Right flanking sequence: Indices 986484 -- 986983 TTTTAGGGTTTTTTTTAATGTTGGAAAACCAAAATATCTTATACAGAGGTATTTTGCATTATTTG AGTAGTCCATGACACTCAAATACCGCTTGGTCAAGACCATACAAAGTAATTTGGTGAATAAGCTT GCTGTTATACACTAGATTCATTGGCTAGTATGTAACAGATAGAAGAAAGCATTTCCGACCATCCA TTCTTAATTAAGCTCAATATTTTCAATATTTTTAATATTTTCATATTTTCATATTTTTTTATGTC TTTTAAATTTTTCATCGATTTCCCAAAAAAGCTCACAACCAGACGAAAACTGCAACGCCCTCACT TGAAAAATTTATTTATTTATTTATATTTTTAATTTATTTTAATTTTTTATTGCCTATTTCTATCG ATTTTCAAAAAATAAAGAAAATTCTTTCTTGTAATCCCACCAGCTAAATAACAGGTATCTGATTG TCGGGAAACACGACTATAGCGTTCTCTTTTAGTGCCCGTTATTTT Found at i:986488 original size:7 final size:7 Alignment explanation
Indices: 986469--986488 Score: 26 Period size: 7 Copynumber: 2.9 Consensus size: 7 986459 AATATATAAA * 986469 TATTAAT 1 TATTTAT 986476 TATTTAT 1 TATTTAT * 986483 TTTTTA 1 TATTTA 986489 GGGTTTTTTT Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70 Consensus pattern (7 bp): TATTTAT Left flanking sequence: Indices 985969 -- 986468 GTATACATATTCCTGATCAGGACCATTTACCCAGTCGATTTGGGCACGTCCGTCCGTTTGTCTAT AAAACTATAAAAGCATAAAGTTCAGATTATGAATGGACGCCCCCATAAGACCCAAAAACCTTATT AGATTAGCGCCCCATACTTAAAAATAATTTTATTTTTAAGTTTAGAAGTAAGTTTTTAAGGGAAG GATGTACACAAAATGTAAGGTCATATTACCTTAAGTGTAAGCCATGCATTTTTGTATGTTGACGG TGCGATGAAAGGGAAATCTGAAGTGCTAGGAAGTTTAATTTGAAATGAAATCATTGAAGTCGTTT TCAACGAAAATATGAAAAATTCCATAATTCGTTATTTATGGTATTGGGGCAAAACACTTTTTAAA ACCAAAGATTGAAAATTAGTTTTTATCTACATTCTACACAAGTCTGTAACTGTAGGAGTTCAGGG ATATTGCTCTATCGATCTTAACTATTAATATATGTAATATATAAA Right flanking sequence: Indices 986489 -- 986988 GGGTTTTTTTTAATGTTGGAAAACCAAAATATCTTATACAGAGGTATTTTGCATTATTTGAGTAG TCCATGACACTCAAATACCGCTTGGTCAAGACCATACAAAGTAATTTGGTGAATAAGCTTGCTGT TATACACTAGATTCATTGGCTAGTATGTAACAGATAGAAGAAAGCATTTCCGACCATCCATTCTT AATTAAGCTCAATATTTTCAATATTTTTAATATTTTCATATTTTCATATTTTTTTATGTCTTTTA AATTTTTCATCGATTTCCCAAAAAAGCTCACAACCAGACGAAAACTGCAACGCCCTCACTTGAAA AATTTATTTATTTATTTATATTTTTAATTTATTTTAATTTTTTATTGCCTATTTCTATCGATTTT CAAAAAATAAAGAAAATTCTTTCTTGTAATCCCACCAGCTAAATAACAGGTATCTGATTGTCGGG AAACACGACTATAGCGTTCTCTTTTAGTGCCCGTTATTTTTTCAT Found at i:986706 original size:9 final size:9 Alignment explanation
Indices: 986692--986735 Score: 67 Period size: 9 Copynumber: 5.1 Consensus size: 9 986682 TTAATTAAGC 986692 TCAATATTT 1 TCAATATTT 986701 TCAATATTT 1 TCAATATTT * 986710 TTAATATTT 1 TCAATATTT 986719 TC-ATATTT 1 TCAATATTT 986727 TC-ATATTT 1 TCAATATTT 986735 T 1 T 986736 TTTATGTCTT Statistics Matches: 33, Mismatches: 2, Indels: 1 0.92 0.06 0.03 Matches are distributed among these distances: 8 15 0.45 9 18 0.55 ACGTcount: A:0.30, C:0.09, G:0.00, T:0.61 Consensus pattern (9 bp): TCAATATTT Left flanking sequence: Indices 986192 -- 986691 CCTTAAGTGTAAGCCATGCATTTTTGTATGTTGACGGTGCGATGAAAGGGAAATCTGAAGTGCTA GGAAGTTTAATTTGAAATGAAATCATTGAAGTCGTTTTCAACGAAAATATGAAAAATTCCATAAT TCGTTATTTATGGTATTGGGGCAAAACACTTTTTAAAACCAAAGATTGAAAATTAGTTTTTATCT ACATTCTACACAAGTCTGTAACTGTAGGAGTTCAGGGATATTGCTCTATCGATCTTAACTATTAA TATATGTAATATATAAATATTAATTATTTATTTTTTAGGGTTTTTTTTAATGTTGGAAAACCAAA ATATCTTATACAGAGGTATTTTGCATTATTTGAGTAGTCCATGACACTCAAATACCGCTTGGTCA AGACCATACAAAGTAATTTGGTGAATAAGCTTGCTGTTATACACTAGATTCATTGGCTAGTATGT AACAGATAGAAGAAAGCATTTCCGACCATCCATTCTTAATTAAGC Right flanking sequence: Indices 986736 -- 987235 TTTATGTCTTTTAAATTTTTCATCGATTTCCCAAAAAAGCTCACAACCAGACGAAAACTGCAACG CCCTCACTTGAAAAATTTATTTATTTATTTATATTTTTAATTTATTTTAATTTTTTATTGCCTAT TTCTATCGATTTTCAAAAAATAAAGAAAATTCTTTCTTGTAATCCCACCAGCTAAATAACAGGTA TCTGATTGTCGGGAAACACGACTATAGCGTTCTCTTTTAGTGCCCGTTATTTTTTCATTTATTAA CAAAATTCAACAGGGAATTCTTACTAAATATGTTGATGCTTAAACTACTATGGAAAAATCCAAGA AAAATTAAAATAATAAAATTTTTTCCTTTTGTCCATAGTTAGACAACATACGGTTAAATAGCATA GAAGTAATTGTAAAGTAAAATGCATTTTTAACGACATATAGTAAAGGTCTACAACCCCAGGTGTT TATAAGTCATCGGCGTAGGAAATATATATATTAACAGGTGATTTC Found at i:986724 original size:8 final size:8 Alignment explanation
Indices: 986695--986735 Score: 57 Period size: 8 Copynumber: 4.9 Consensus size: 8 986685 ATTAAGCTCA 986695 ATATTTTC 1 ATATTTTC * 986703 AATATTTTTA 1 -ATA-TTTTC 986713 ATATTTTC 1 ATATTTTC 986721 ATATTTTC 1 ATATTTTC 986729 ATATTTT 1 ATATTTT 986736 TTTATGTCTT Statistics Matches: 29, Mismatches: 2, Indels: 3 0.85 0.06 0.09 Matches are distributed among these distances: 8 19 0.66 9 6 0.21 10 4 0.14 ACGTcount: A:0.29, C:0.07, G:0.00, T:0.63 Consensus pattern (8 bp): ATATTTTC Left flanking sequence: Indices 986195 -- 986694 TAAGTGTAAGCCATGCATTTTTGTATGTTGACGGTGCGATGAAAGGGAAATCTGAAGTGCTAGGA AGTTTAATTTGAAATGAAATCATTGAAGTCGTTTTCAACGAAAATATGAAAAATTCCATAATTCG TTATTTATGGTATTGGGGCAAAACACTTTTTAAAACCAAAGATTGAAAATTAGTTTTTATCTACA TTCTACACAAGTCTGTAACTGTAGGAGTTCAGGGATATTGCTCTATCGATCTTAACTATTAATAT ATGTAATATATAAATATTAATTATTTATTTTTTAGGGTTTTTTTTAATGTTGGAAAACCAAAATA TCTTATACAGAGGTATTTTGCATTATTTGAGTAGTCCATGACACTCAAATACCGCTTGGTCAAGA CCATACAAAGTAATTTGGTGAATAAGCTTGCTGTTATACACTAGATTCATTGGCTAGTATGTAAC AGATAGAAGAAAGCATTTCCGACCATCCATTCTTAATTAAGCTCA Right flanking sequence: Indices 986736 -- 987235 TTTATGTCTTTTAAATTTTTCATCGATTTCCCAAAAAAGCTCACAACCAGACGAAAACTGCAACG CCCTCACTTGAAAAATTTATTTATTTATTTATATTTTTAATTTATTTTAATTTTTTATTGCCTAT TTCTATCGATTTTCAAAAAATAAAGAAAATTCTTTCTTGTAATCCCACCAGCTAAATAACAGGTA TCTGATTGTCGGGAAACACGACTATAGCGTTCTCTTTTAGTGCCCGTTATTTTTTCATTTATTAA CAAAATTCAACAGGGAATTCTTACTAAATATGTTGATGCTTAAACTACTATGGAAAAATCCAAGA AAAATTAAAATAATAAAATTTTTTCCTTTTGTCCATAGTTAGACAACATACGGTTAAATAGCATA GAAGTAATTGTAAAGTAAAATGCATTTTTAACGACATATAGTAAAGGTCTACAACCCCAGGTGTT TATAAGTCATCGGCGTAGGAAATATATATATTAACAGGTGATTTC Found at i:987090 original size:8 final size:8 Alignment explanation
Indices: 987079--987094 Score: 25 Period size: 8 Copynumber: 2.0 Consensus size: 8 987069 AATAATAAAA * 987079 TTTTTTCC 1 TTTTGTCC 987087 TTTTGTCC 1 TTTTGTCC 987095 ATAGTTAGAC Statistics Matches: 7, Mismatches: 1, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 8 7 1.00 ACGTcount: A:0.00, C:0.25, G:0.06, T:0.69 Consensus pattern (8 bp): TTTTGTCC Left flanking sequence: Indices 986579 -- 987078 TCAAGACCATACAAAGTAATTTGGTGAATAAGCTTGCTGTTATACACTAGATTCATTGGCTAGTA TGTAACAGATAGAAGAAAGCATTTCCGACCATCCATTCTTAATTAAGCTCAATATTTTCAATATT TTTAATATTTTCATATTTTCATATTTTTTTATGTCTTTTAAATTTTTCATCGATTTCCCAAAAAA GCTCACAACCAGACGAAAACTGCAACGCCCTCACTTGAAAAATTTATTTATTTATTTATATTTTT AATTTATTTTAATTTTTTATTGCCTATTTCTATCGATTTTCAAAAAATAAAGAAAATTCTTTCTT GTAATCCCACCAGCTAAATAACAGGTATCTGATTGTCGGGAAACACGACTATAGCGTTCTCTTTT AGTGCCCGTTATTTTTTCATTTATTAACAAAATTCAACAGGGAATTCTTACTAAATATGTTGATG CTTAAACTACTATGGAAAAATCCAAGAAAAATTAAAATAATAAAA Right flanking sequence: Indices 987095 -- 987594 ATAGTTAGACAACATACGGTTAAATAGCATAGAAGTAATTGTAAAGTAAAATGCATTTTTAACGA CATATAGTAAAGGTCTACAACCCCAGGTGTTTATAAGTCATCGGCGTAGGAAATATATATATTAA CAGGTGATTTCCCATCAATCTAAAACTCTTTACCTTGATCTGTTTAACAGAAAACTTAATAAACA CGTAACATGTAATAAATCCCTGACCAGTGCCCAAGTGTTGGCAAATCAAATATTGGATCATGTCA TAGCAAATTTGGATATCTCTGCCAAACTCAAATTAAAGTCTTATGGTATCAATTTCCACAACTTC CAGATATTCGCTGAAAGATAAAAAGAAGAAAGCTATTCTAACCATTTAAAGTATATAAATTATAA TCCAAGATCTCTGGCCGAGTCGATCTGGACATGTCCGTCTGTTTTTTCGTCTATGTATAACCACT GAGGAGATCTCGGAAACTCTAAACATTAAAAAGGTTAGATAAGCA Found at i:987301 original size:7 final size:7 Alignment explanation
Indices: 987286--987301 Score: 25 Period size: 7 Copynumber: 2.3 Consensus size: 7 987276 AAACTTAATA 987286 AACACGT 1 AACACGT * 987293 AACATGT 1 AACACGT 987300 AA 1 AA 987302 TAAATCCCTG Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.50, C:0.19, G:0.12, T:0.19 Consensus pattern (7 bp): AACACGT Left flanking sequence: Indices 986786 -- 987285 ACGAAAACTGCAACGCCCTCACTTGAAAAATTTATTTATTTATTTATATTTTTAATTTATTTTAA TTTTTTATTGCCTATTTCTATCGATTTTCAAAAAATAAAGAAAATTCTTTCTTGTAATCCCACCA GCTAAATAACAGGTATCTGATTGTCGGGAAACACGACTATAGCGTTCTCTTTTAGTGCCCGTTAT TTTTTCATTTATTAACAAAATTCAACAGGGAATTCTTACTAAATATGTTGATGCTTAAACTACTA TGGAAAAATCCAAGAAAAATTAAAATAATAAAATTTTTTCCTTTTGTCCATAGTTAGACAACATA CGGTTAAATAGCATAGAAGTAATTGTAAAGTAAAATGCATTTTTAACGACATATAGTAAAGGTCT ACAACCCCAGGTGTTTATAAGTCATCGGCGTAGGAAATATATATATTAACAGGTGATTTCCCATC AATCTAAAACTCTTTACCTTGATCTGTTTAACAGAAAACTTAATA Right flanking sequence: Indices 987302 -- 987801 TAAATCCCTGACCAGTGCCCAAGTGTTGGCAAATCAAATATTGGATCATGTCATAGCAAATTTGG ATATCTCTGCCAAACTCAAATTAAAGTCTTATGGTATCAATTTCCACAACTTCCAGATATTCGCT GAAAGATAAAAAGAAGAAAGCTATTCTAACCATTTAAAGTATATAAATTATAATCCAAGATCTCT GGCCGAGTCGATCTGGACATGTCCGTCTGTTTTTTCGTCTATGTATAACCACTGAGGAGATCTCG GAAACTCTAAACATTAAAAAGGTTAGATAAGCAAACGCATTCGAAAGACGGATTGGAAGTTGGTT TCAGCAGGTAGACATGCCCACTTTAACTCCTAGTTAAACCACAAAATCTTAGAAGGGCCCCAAGA CGAACAGAAAGTAGTTTCAGTTATTGGGTTAGGAAGGATGATGAAATATTCATCATACAATCATA TACACTAGCTGCAGCAGGCGTGAACTGGGCCCTGGATAGCACATC Found at i:987483 original size:9 final size:9 Alignment explanation
Indices: 987466--987483 Score: 29 Period size: 9 Copynumber: 2.0 Consensus size: 9 987456 TCTAACCATT 987466 TAAAGTATA 1 TAAAGTATA * 987475 TAAATTATA 1 TAAAGTATA 987484 ATCCAAGATC Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 8 1.00 ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39 Consensus pattern (9 bp): TAAAGTATA Left flanking sequence: Indices 986966 -- 987465 TTTAGTGCCCGTTATTTTTTCATTTATTAACAAAATTCAACAGGGAATTCTTACTAAATATGTTG ATGCTTAAACTACTATGGAAAAATCCAAGAAAAATTAAAATAATAAAATTTTTTCCTTTTGTCCA TAGTTAGACAACATACGGTTAAATAGCATAGAAGTAATTGTAAAGTAAAATGCATTTTTAACGAC ATATAGTAAAGGTCTACAACCCCAGGTGTTTATAAGTCATCGGCGTAGGAAATATATATATTAAC AGGTGATTTCCCATCAATCTAAAACTCTTTACCTTGATCTGTTTAACAGAAAACTTAATAAACAC GTAACATGTAATAAATCCCTGACCAGTGCCCAAGTGTTGGCAAATCAAATATTGGATCATGTCAT AGCAAATTTGGATATCTCTGCCAAACTCAAATTAAAGTCTTATGGTATCAATTTCCACAACTTCC AGATATTCGCTGAAAGATAAAAAGAAGAAAGCTATTCTAACCATT Right flanking sequence: Indices 987484 -- 987983 ATCCAAGATCTCTGGCCGAGTCGATCTGGACATGTCCGTCTGTTTTTTCGTCTATGTATAACCAC TGAGGAGATCTCGGAAACTCTAAACATTAAAAAGGTTAGATAAGCAAACGCATTCGAAAGACGGA TTGGAAGTTGGTTTCAGCAGGTAGACATGCCCACTTTAACTCCTAGTTAAACCACAAAATCTTAG AAGGGCCCCAAGACGAACAGAAAGTAGTTTCAGTTATTGGGTTAGGAAGGATGATGAAATATTCA TCATACAATCATATACACTAGCTGCAGCAGGCGTGAACTGGGCCCTGGATAGCACATCGGAAATG TTAAAATGTTTTTACTGGAGTATTATTGTGAGAGTCCATACTTGCCTCACATTGGTCCTCACATT TCAGCATCAAAGGCCAGGACGGTATATGCAAGATTTCCAAGTTGATTTGCTAAAGTTAGTGTCCT AAACCTTTGGGAGGATATACAAAATATTTAAGCGTAGGAAAAAAG Found at i:990723 original size:7 final size:7 Alignment explanation
Indices: 990711--990726 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 990701 ATACAAAAAT 990711 AATAATA 1 AATAATA 990718 AATAATA 1 AATAATA 990725 AA 1 AA 990727 ATATATATAT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25 Consensus pattern (7 bp): AATAATA Left flanking sequence: Indices 990211 -- 990710 CATATTTTAAAAAAAAAGGAGTGCAAACTTATCTAGAAGTCGCGAAGAAACGATTTTGGAAATTC AAACCTTATGGAAGGATATTTCAATAGATTATATCCACAGCTTGGTACAGTCTGTACCAAAACGT CTGCAAAAGGTGATAGACGCTAAGGGAGGGTATATTTTTTATTAATTTGTCATAATTTTGTAGTT GACTTTTTTTTTTTCAATTTATAACATTTAAATAATTTGTCCAAATACTTATGCCATTCAATCAT TGTATACAATCAATATCCCAAGCGGGAGATCTCGCTCCTGAAATAATGTAAACATCAGGGCAGTA TAAGAAAGATTTTTGTCTCTAGCTGAGATCAAAAGAATAAAGACGTGAAAACTATTTCTCCGATA ATTTTTTATTTCTCATCATGGTCCTTAGTTAACTAACTGGACATTAGTTCGACTTAATAAAAAAA TATAATAACTATTTCCCTATATGTATATTTTTTATATACAAAAAT Right flanking sequence: Indices 990727 -- 991226 ATATATATATATGTTCATCGAACAATACGCAAATATAAAATTAAATCAATACAACATTAATCATA ATCATGTGAGTAAAATCTAAATAGAAAAGGATTTTTAAAAATTCAATGAAACTTTTAATTAGGCT TAGCTAATTTTAATAATTATTTTATTGTTTTAATCGTTGATTTAATTATTTTCTCTTTACTGATT TATTTATAAGCATAATTATTCATTGTAATAATCAATTTTTTTTTTAAATAATAGAACTGTGAGCG GGCTAGTCATATGGCTCTAAAACTGTATGCAGTATGAAATAGTGTTTTTGATTTTTCTTGATTTA ATTCTTATTTTACTTTCAACTGTTTTTGTCTGCATACGCAGTCTTTAATTTTTTCTGTGTTTTTT TTTTGTTACCCCGCCTATGTAAAAAGAATAAATAAACTCAGAATAGATACATACATACATCTAGT ATGTACGCAAGATCTTCTCTGGTGTGATCTTGAGTAAATTTTTCT Found at i:992956 original size:8 final size:8 Alignment explanation
Indices: 992943--992958 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 992933 AAATTGGGGG 992943 AAAAATAA 1 AAAAATAA 992951 AAAAATAA 1 AAAAATAA 992959 TACAAAAAAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12 Consensus pattern (8 bp): AAAAATAA Left flanking sequence: Indices 992443 -- 992942 CGATCTTAGCCTGATCATCAAGAGTAATGCCTAAATTTAAAGAAAAGCTTATTAAAAATCAGTAA TAATAATAGAAGTACAGAAAATTAGGTTTATTTTTATTTAAAATACAAGTTTTTCCTCTTTATCG AATTAGTAATGAATCACATAACAGCCAAAGATTTTATATTTATGTAATATGTACCGTAAAATAAT AAATTTAGATAATTGCATCACGAGCACAAAGAGTGTGAATATACTCATAGCCGAATAAAAAAACT TACTTAGATAATATTGTTATATTAAGTCTATTTATTGATTGCCTTTACCTTTACATAAACTGTTC TAAAACTCTCTATAAAATTATCGCACTTTACGACAATATTACAGTGTTATTGTTACTTAGATAAA GATATATTAATCAATAAAATACAAACCACTTTAAGACATCCGTTACACAGCTGGTGGAAGTGCTC GGTAGAAATATTATATTTTTCTGGAATATCAACAGAAATTGGGGG Right flanking sequence: Indices 992959 -- 993458 TACAAAAAAACCTTTTTTGAAAAAAAATCGAAACATATTTTATAGTGTGGGCGTTCAAGTTTTTG TGTGCGTTAAGCGGGATAAAAACGGTCGCTGAAAAAAATCTGCATGCTTAATCCCTACTTTCTAG CTTTTATAGGTACTGAGATATCTACGATTATAAGGACGGGCAGACAAACGCAGATGGCCAGATCA ACTTTAAAAAAATGTATAGCGGACCTGATGAAATAATCTTTTAAATGTTACATATTTTTTAACGA ATCCAATATACACTTTTACTCTACGAGTAACAGGTATAATAAAAGAAATCGAACCGTTTTTTAAA AGAGTGGTTGTTACAGTCTTGGACGGTTTCTCTCATTAAGTTCCTAAGATCAAATCGATATCGGA ACCGTTTCTTTCTACATGTTACGGTGAAAAACTAAGACTAGAGCGAATAAGAACAATTTATGAGC ATCGAAAATATGATTTATTTTCTATTATTTTAATTATTTTCCGAC Found at i:993451 original size:9 final size:10 Alignment explanation
Indices: 993428--993454 Score: 40 Period size: 9 Copynumber: 2.8 Consensus size: 10 993418 AAAATATGAT * 993428 TTATTTTCTA 1 TTATTTTCAA 993438 TTATTTT-AA 1 TTATTTTCAA 993447 TTATTTTC 1 TTATTTTC 993455 CGACTATTCC Statistics Matches: 15, Mismatches: 1, Indels: 2 0.83 0.06 0.11 Matches are distributed among these distances: 9 8 0.53 10 7 0.47 ACGTcount: A:0.22, C:0.07, G:0.00, T:0.70 Consensus pattern (10 bp): TTATTTTCAA Left flanking sequence: Indices 992928 -- 993427 AACAGAAATTGGGGGAAAAATAAAAAAATAATACAAAAAAACCTTTTTTGAAAAAAAATCGAAAC ATATTTTATAGTGTGGGCGTTCAAGTTTTTGTGTGCGTTAAGCGGGATAAAAACGGTCGCTGAAA AAAATCTGCATGCTTAATCCCTACTTTCTAGCTTTTATAGGTACTGAGATATCTACGATTATAAG GACGGGCAGACAAACGCAGATGGCCAGATCAACTTTAAAAAAATGTATAGCGGACCTGATGAAAT AATCTTTTAAATGTTACATATTTTTTAACGAATCCAATATACACTTTTACTCTACGAGTAACAGG TATAATAAAAGAAATCGAACCGTTTTTTAAAAGAGTGGTTGTTACAGTCTTGGACGGTTTCTCTC ATTAAGTTCCTAAGATCAAATCGATATCGGAACCGTTTCTTTCTACATGTTACGGTGAAAAACTA AGACTAGAGCGAATAAGAACAATTTATGAGCATCGAAAATATGAT Right flanking sequence: Indices 993455 -- 993954 CGACTATTCCTACAACGCCTGAATTATAAACCAGCTGAAATTAAAACCAAAATTGTGAATTGCCA AAAACGCGAATTATATCGAATTAAATTATTATCTAATACAACAAAAGTAAGTTTTTTTTTACATT TTTTCCGCTTACTTCTATGGCACCTATATGATATAGTAATCCGATCCGTCCCGTTACGACTTATA AAATACCTGCAATATAAATTAGACGGGGAAAGTTTCGTGCTGAAAACTGAGAAGCAACCGGAAGG ACTTCGCTGCGTTCCAAACTGACTGAAATCAATATACCCTCAGCATGGGTAAGAGTGAAATTTTT CTAACTACATAAGTATTAACTTTTACTACAAATTTATTCGTAACGTGAAAACTCCCTTATTCAAT TATAGAATGCGTGAGAATAGCATAATTGAAAAGGAGCCTGTCCCTGGAGACCATTTCGTTAGAGA TAATAAGGTTAGCAAAAAAGTTATAAAGTACAGATTGTTAAGCTT Found at i:994637 original size:7 final size:7 Alignment explanation
Indices: 994625--994644 Score: 33 Period size: 7 Copynumber: 2.9 Consensus size: 7 994615 TCGAATTTTA 994625 ACAATTG 1 ACAATTG 994632 ACAATTG 1 ACAATTG * 994639 ACTATT 1 ACAATT 994645 CTCACCTGCC Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35 Consensus pattern (7 bp): ACAATTG Left flanking sequence: Indices 994125 -- 994624 ATCTGGCAGATGTACTCAAACTTTCGATACAAATCGAATAAGCAGGGACGAGTGCCTGAGGTTTA ACGCACTGCGGGGTTGTTTGTGAGAGTAACCTTCAAATTTTATATTAACATTTTATATGTTACAA GTGAGAACGCTATAGTAAAGTCCCACGACTACCAGATACCCGTTACCCGGGAATGGGCATACAAA TAAAACTAAACAATACAAATGAAATGGAAAAATGTCAACACATTTTTCAAGGGTGTGGACGGTTT TGGGTGCTAGAATGCGCGTGGCAACATCAGAAAACAAACTTATCTAGGCTCTCGAGTTTTTATAG TTCCTGAGATCTCGACGTTCATACGGACAGACCGACCGACATGCTCAGATCGACTCGGCTAGTGA CCCTGATCAGGAATATTTGTATTTTATAGTGTCGGAATCGCTTCCTTCTACATGTTTGCTTGAAC AAATTTTATTTTGATAATATATTTTGATTGGCTTATCGAATTTTA Right flanking sequence: Indices 994645 -- 995144 CTCACCTGCCTTCCTAATTTAACACATTTTTATCGGACAACAGCGTGCGCTTCGTCACAACGTGG ACAGCCGTCCGCAGTGATATCGAACAGCAGCCGTCGGAGAAAAGGAAATAAATACAAGAAATCGC AAAAGTTTTTTTTTGTAAATATTTTTTGGTGTAAGTATAAAGACAAAATATTCAAATCTGTAAGC TTCGACATTAAAAGGTGCAAACCGCATTTGCAACGTGAATTCAATTATCCCTAATTAATTTAAGT GGTTGTTTACACCAGGGAGTGCCTCAAACTTTCACTTCAATTGATTGTCCAGGTTTCATATTTCA AATGGGAAGTGTGTTCTCGTCATCCAATTGTACGTATACGACGGCCTATTAAAATCGAAAACGAT TACTTTTCGGAAGTTCCGGGGGTTGATTTCAGAAGCATATGCCTTTTGACGATACATATTCAGAT ACTGGGGTAGATAAAAAATGGACTAAAATACCCACTGATGAGTTG Found at i:995859 original size:8 final size:8 Alignment explanation
Indices: 995846--995861 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 995836 GCATCGGGTG 995846 AGTATGTA 1 AGTATGTA 995854 AGTATGTA 1 AGTATGTA 995862 CATAAATGCA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38 Consensus pattern (8 bp): AGTATGTA Left flanking sequence: Indices 995346 -- 995845 TGAGTTTACCTTGACTAATTATTTTGCTTTTGATACAAACGGCTTGTATCCGTGGAAACAGTGAA TATATATATACTGATATTTTAAATCAGTAACTCGCAAGTGATCTCAATCGATAAGTTTTCGCTAT CGCTTTAATGTGGGAACATATGTACATTGTATATTCTATAATGAAAGTAAAGAACATAAAAAATC AAACTTCGTATATTTGTGGCAATCGTTCGAAGAAATGTTCAATTTTAAGACTTTTGATATGCCCT TTGAAATCACTTCCCTAGTGTTTAGAAATGTGTAGTATTTACACGAATCAGGTGAAACATATCTC TTCTAAACCGATGACTAAAACATACAAATAGCGTCCACCAGGATGATTACTAGCCGAGAGTACTA TTAATGCGAGTTGTTTTGTTTATTCCACTTTAAGATTCCTGTAGTGGTATAAAGTAAGTGCCGGC CCTTCTCCATCTGTAAGTAAGTGTTACAATTTTTGGCATCGGGTG Right flanking sequence: Indices 995862 -- 996361 CATAAATGCATGTGCTTCACACTTGCGACTATGTACATAGGTGCACATGTACATATATTAACAAT AAGCTTTGAGTGGAATATTCACCTAATATAATTTATGTGTATGCATTGGTTTTTTCTTGAATGTT CGACATATTCACAAATTTGCTTTACACATTTGCTTAAAGAAATTAAGTAAATAAATAAATTATTA ATAAATTAGTGTAATATTTCAAGAAGACCGATGTCCATCAGAGGTTTGATAAGCCTCGCCAGGAG CATTGTCAAAGTCACCTGGGGATGTACCAAACAAGGTTTGTTTTAAATTAACAGTCATGCTTTTT TCTTTTTAGTTAAATTATTGATTAAATAACTATAAAAAGAATGTTGTTGTTCCCAAAAGCGAGAT TGGCTCTCCTTTATACTGAGATCGGATCTTCTCTAAGCCGAGATCGGTTCTTCTCGATACCGACT TCTTCTGGACATCGAGAAGACATTCTCATTTCGATAGCTATTTGC Found at i:997563 original size:10 final size:10 Alignment explanation
Indices: 997542--997563 Score: 30 Period size: 10 Copynumber: 2.2 Consensus size: 10 997532 TAAAACAAAG * 997542 AAAAATCTAA 1 AAAAATCCAA * 997552 AAAAATTCAA 1 AAAAATCCAA 997562 AA 1 AA 997564 GTGTTTGCGT Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.73, C:0.09, G:0.00, T:0.18 Consensus pattern (10 bp): AAAAATCCAA Left flanking sequence: Indices 997042 -- 997541 TACATACTGTCAGTATCGAAGGAACGCGGTGTCATTTGGTGACTATCCAGGTGAGTACAACCCCA AGGTGCACGGGCCCTAAGACCCCGCTCGCTTCTACGGTAAAGCCTGGCTGGGACGCCGCAACAAG ACGCCCAACGCTGTGGCCGGAGCCGTGAACCGTGCATGCTGGCGCTGGCAGTACAACTACGTGTT CCCGAAGCGCGCCGTGATCGCTCCCTTCTTCCAGCTGACCGTCGCCAGCATGACGTTCTTCTGTC TGATTAACTACACCAAGTTGAAGCACCACAGGAACTACAATACCACTAAGGGTCGCTGCCCAGTG GTCCTGCATCTACAACAGATTCTACACTTTCCACAAGACGTGCCAGAGGCGGGCAGCACTAAACT ATATCTATTTGGCTTTTGTGTTTTGAAAACTGCTAAAGTGAATAAAATGGCTGTGAATATCCATG CTGCCATAGACTCAGAAAATTCGCAAGACAAACAATAAAACAAAG Right flanking sequence: Indices 997564 -- 998063 GTGTTTGCGTCGCAAACGCGTCTAACGCTTTAGGGCGTTATTGTGGGCGTGGCAACAGGTTTTTT GGCAAATGAATAGAAATACACAAGACTCCTAAAATTACGAAAAAAAATTTCAAAAGCGTGGGCGT GGCATTTTGGGCGGTTTTAAAGTGTGGGAGTAGCAGTTTTGTGTGTGTCGATGTGTCTATGTCTC TGGAAGCTGCATCCTCAATCTCAACATTCTAGCTTTTACAGTTCCTGAGCTCGAGACATTCATAC GGACAGACGGACAGGGTCAGATCGACCCGACTCGATCCTGCTTAATATATGGTCGGAAACACTTC CTTTCATACTTTTAACCGAATCTAATATACCCTTTTATCCTACGACTAACGGGTACAAAAATATA AGAATAAATAAAACAATATATATTTTTTTAAATATCACTTTAAACCGATAAGCTCGATTACGTTT TATTTTGAGTTTAGTATACAATTTATAGAACATTTTAGCCAGATA Found at i:997750 original size:8 final size:8 Alignment explanation
Indices: 997737--997755 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 997727 CAGTTTTGTG 997737 TGTGTCGA 1 TGTGTCGA * 997745 TGTGTCTA 1 TGTGTCGA 997753 TGT 1 TGT 997756 CTCTGGAAGC Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.11, C:0.11, G:0.32, T:0.47 Consensus pattern (8 bp): TGTGTCGA Left flanking sequence: Indices 997237 -- 997736 CCCGAAGCGCGCCGTGATCGCTCCCTTCTTCCAGCTGACCGTCGCCAGCATGACGTTCTTCTGTC TGATTAACTACACCAAGTTGAAGCACCACAGGAACTACAATACCACTAAGGGTCGCTGCCCAGTG GTCCTGCATCTACAACAGATTCTACACTTTCCACAAGACGTGCCAGAGGCGGGCAGCACTAAACT ATATCTATTTGGCTTTTGTGTTTTGAAAACTGCTAAAGTGAATAAAATGGCTGTGAATATCCATG CTGCCATAGACTCAGAAAATTCGCAAGACAAACAATAAAACAAAGAAAAATCTAAAAAAATTCAA AAGTGTTTGCGTCGCAAACGCGTCTAACGCTTTAGGGCGTTATTGTGGGCGTGGCAACAGGTTTT TTGGCAAATGAATAGAAATACACAAGACTCCTAAAATTACGAAAAAAAATTTCAAAAGCGTGGGC GTGGCATTTTGGGCGGTTTTAAAGTGTGGGAGTAGCAGTTTTGTG Right flanking sequence: Indices 997756 -- 998255 CTCTGGAAGCTGCATCCTCAATCTCAACATTCTAGCTTTTACAGTTCCTGAGCTCGAGACATTCA TACGGACAGACGGACAGGGTCAGATCGACCCGACTCGATCCTGCTTAATATATGGTCGGAAACAC TTCCTTTCATACTTTTAACCGAATCTAATATACCCTTTTATCCTACGACTAACGGGTACAAAAAT ATAAGAATAAATAAAACAATATATATTTTTTTAAATATCACTTTAAACCGATAAGCTCGATTACG TTTTATTTTGAGTTTAGTATACAATTTATAGAACATTTTAGCCAGATAGTATTCAATGTTCTGAA GGAGTATACAACTTACCGATTTACCGTATACAATTTACCGAAGAGTACAATTTACACTTGTTTAT GCTATATGGAATATATACGCATTGGTATAGACTTTTTACGACATTTTGCACTGTTTTAAGCGATT GTAAGTATTGATTTTTCGAACTAATGATTTTATTTTCGAAATTTA Found at i:997835 original size:8 final size:8 Alignment explanation
Indices: 997822--997837 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 997812 AGACATTCAT 997822 ACGGACAG 1 ACGGACAG 997830 ACGGACAG 1 ACGGACAG 997838 GGTCAGATCG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.25, G:0.38, T:0.00 Consensus pattern (8 bp): ACGGACAG Left flanking sequence: Indices 997322 -- 997821 AAGCACCACAGGAACTACAATACCACTAAGGGTCGCTGCCCAGTGGTCCTGCATCTACAACAGAT TCTACACTTTCCACAAGACGTGCCAGAGGCGGGCAGCACTAAACTATATCTATTTGGCTTTTGTG TTTTGAAAACTGCTAAAGTGAATAAAATGGCTGTGAATATCCATGCTGCCATAGACTCAGAAAAT TCGCAAGACAAACAATAAAACAAAGAAAAATCTAAAAAAATTCAAAAGTGTTTGCGTCGCAAACG CGTCTAACGCTTTAGGGCGTTATTGTGGGCGTGGCAACAGGTTTTTTGGCAAATGAATAGAAATA CACAAGACTCCTAAAATTACGAAAAAAAATTTCAAAAGCGTGGGCGTGGCATTTTGGGCGGTTTT AAAGTGTGGGAGTAGCAGTTTTGTGTGTGTCGATGTGTCTATGTCTCTGGAAGCTGCATCCTCAA TCTCAACATTCTAGCTTTTACAGTTCCTGAGCTCGAGACATTCAT Right flanking sequence: Indices 997838 -- 998337 GGTCAGATCGACCCGACTCGATCCTGCTTAATATATGGTCGGAAACACTTCCTTTCATACTTTTA ACCGAATCTAATATACCCTTTTATCCTACGACTAACGGGTACAAAAATATAAGAATAAATAAAAC AATATATATTTTTTTAAATATCACTTTAAACCGATAAGCTCGATTACGTTTTATTTTGAGTTTAG TATACAATTTATAGAACATTTTAGCCAGATAGTATTCAATGTTCTGAAGGAGTATACAACTTACC GATTTACCGTATACAATTTACCGAAGAGTACAATTTACACTTGTTTATGCTATATGGAATATATA CGCATTGGTATAGACTTTTTACGACATTTTGCACTGTTTTAAGCGATTGTAAGTATTGATTTTTC GAACTAATGATTTTATTTTCGAAATTTAAAATAACGTTTTGTTGCAGACAGACAGAGAAACCAAC CAAAATGTTTATTTCGTCACTATGTGGCCTTATGTCCACATTAAA Found at i:999056 original size:7 final size:7 Alignment explanation
Indices: 999044--999057 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 999034 GCGACAATTG 999044 AAATGTT 1 AAATGTT 999051 AAATGTT 1 AAATGTT 999058 GCTTTCTATT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43 Consensus pattern (7 bp): AAATGTT Left flanking sequence: Indices 998544 -- 999043 TTTAAGATTTCGGTCCACTTTTATAATATATTTGGAACGTATATTTTATATACGTAATATTTCTC ATTATTGAAGTTACATCTTATAGTTTGATAAAAGAAAGTATACTCGATTTTAGTTAAAAAATTTA ACACAGTAGTTACTTTCTTTGAGGACTAGATTATTCCAACACGAAATAGGTGCGAAAACTGAATA TGAAACACCATATTCGTTGGTATTGACATCGTTTAAAGAAAAGCAGCAGGAGTGGGAAACCGATA CCGATACCAGATTGTAAAAGTCTAAGAACAAAATAATCCTGCTTATAGCCAATAAGAGACCGAAA GCAAATGATACACCACAGAAGAAGATATATATATATACATACTAGAAAAAATGAGCCAATAAGAA TCAACTATCCTAATTTCCAGGGCGTTTCCAAAAGTACGCGCCTGCGCTCTTCTAAATATAATAGT TTGTGGTATCAACCCTGTTTTTGTACAGGTATGTAGCGACAATTG Right flanking sequence: Indices 999058 -- 999557 GCTTTCTATTCAATTAACTTCACCAACGAATTTAGGTAACGATAATTGAATTTAATTGGCGAGTT AAAGGATGTGTGTGTAATACATGAGCTCATTCTCACACAATTCATATACAACTGACATTTTATAG CAGTACTTAAGAGTAGGACGGTCAATGTTCTATGTAAAACCGAGATGGAACACTATAGTCAAGTT CGATATTTCAAAATTTTTGTAAAATATCGATCAAATTGAGAAACACTACAACATGAAAATATTTT TTAAAAATTTCAAGTTTGAAATTATTTCAATTTTGGTCCTTCCGTATCTATCGATACGCCAAAAC GAATTTTTAACTTTTTCGTTCGTACTCTTACTAACCGAGTATGTGTATCTGTAACAGGTTGAAGG AAGAATTTCCGACCCGAAATATATACATATATATTTTTGATCAGGATTACCAGCCGAGTCGATTT GTCCGCATGAGCCTCGATCGCAGGAATTTTGAATCTAGAAAGTTG Found at i:999750 original size:11 final size:10 Alignment explanation
Indices: 999734--999754 Score: 33 Period size: 11 Copynumber: 2.0 Consensus size: 10 999724 TCCACTCTTA 999734 CGCCCACAAAC 1 CGCCCA-AAAC 999745 CGCCCAAAAC 1 CGCCCAAAAC 999755 TACCACGCCC Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 10 4 0.40 11 6 0.60 ACGTcount: A:0.38, C:0.52, G:0.10, T:0.00 Consensus pattern (10 bp): CGCCCAAAAC Left flanking sequence: Indices 999234 -- 999733 GGAACACTATAGTCAAGTTCGATATTTCAAAATTTTTGTAAAATATCGATCAAATTGAGAAACAC TACAACATGAAAATATTTTTTAAAAATTTCAAGTTTGAAATTATTTCAATTTTGGTCCTTCCGTA TCTATCGATACGCCAAAACGAATTTTTAACTTTTTCGTTCGTACTCTTACTAACCGAGTATGTGT ATCTGTAACAGGTTGAAGGAAGAATTTCCGACCCGAAATATATACATATATATTTTTGATCAGGA TTACCAGCCGAGTCGATTTGTCCGCATGAGCCTCGATCGCAGGAATTTTGAATCTAGAAAGTTGA GAGTAAGCATGCAGTTTCCAGATACATACATATATGCAGAGCAAGTTTGTTTCCTGATGTTGTCA CGCCAAAAAAGGTAAACGCCTCCGCGCCCACACCTTTGAAATTTGTTTTGAATTTTTTCATCACT TTATTAATCTTGTAAACTTCTATCGATATGCCACGTCCACTCTTA Right flanking sequence: Indices 999755 -- 1000254 TACCACGCCCACACTGTTGAAAAATGTTTTGTTTTTTGTATAGTACTTGATTTGAAAATTTCTAT AGATGTACCAAAATCATTTGTGAGTTGCTCATGAACCGCCCAAAATGTCACATATCTGAAAAAAT TTTTAATATTATTATTTCTTCCCTATTCAAATTGACATACCAGAAAATTGGTGATATTTTTCGTT CGAACTTCCATTAACAGAGTAACAGGTATCTGGTAGCCCGAGAACTCTACTATGGCGTTCTCAGT TGCTTAATGTGGATTGGCCAGAGCTTTGATGTAAACAGATGTGCCTAGATGGCTGGAAAAATGAA AGCATTTTTCTGTTGATGTTATCTATGTTAAAGCTACGACTCAAACCTAGTAAATTTTACTTGAA AATAATTGACATCTCTATTCCTACACATGTTTTGTTAAATTTTTGTATTATATTATCGATTAGAA TTGAGTACTTGTGTAGATTTCAAAACGGGAACTCAAAACAACTGC Found at i:1001855 original size:7 final size:7 Alignment explanation
Indices: 1001843--1001856 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 1001833 CAAAAATCAG 1001843 CACAAAT 1 CACAAAT 1001850 CACAAAT 1 CACAAAT 1001857 TTGTCTCTGA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.29, G:0.00, T:0.14 Consensus pattern (7 bp): CACAAAT Left flanking sequence: Indices 1001343 -- 1001842 CAGCTTAGATAACAAAGAGTGGGATATTCTACTAGAAACCACAGCCGATGCCGACAAGGTATTGT AACAAACAAAAGAGGTCAAAATCGTTACACTAAACACCCGAGCAGAGACGTGCCCTACACAGATA AATGGAAAAAATGAATAGTCCTTAGCCAACCCCTACTTAGGGATGTGTAGCGAGTAGAGTTGAGC GCTACCCTTGAAGCGAACAATTAAAATTATGCATTGTGTGTGGATTTGTGCATGAATAAATGTAT ACGATTTTTGTATTTGTATTCGATGGTTAAAGGGCGGGACGATCATACATACATATGTATGTACA TGTGTGCTGCACTTTTATTGGTATAGCATCTGCATATCTATGTATGATTTTATTTTAAATAAACT AAAGAATGTTGATCAAAGCTTCCATTTTAGTACACCCTTAGCTCGGTCGTTCCTTATTAAAGTAC GAACAGCTTAGAAACTAAATAATACTGTAGATTTTCAAAAATCAG Right flanking sequence: Indices 1001857 -- 1002356 TTGTCTCTGAAACCCCAGTATGGTTGTCCTTCGGTACAAGGAGGCCTTTAGGAGAAACACGCGTT TCATATTATTCGCCGGATACGGAAATATTATTTTAAATAACTGCGCACCATCACGAAGGAAATAT TTTCCCGTGGGTTCGTCAAGGGACTGAGAGTGTGTATATATATATTCTCGGACCTAACTGCGCTT GCCCTTATAAAGCGGTAATAGAAAGGGAAGAGTGTGCGTGTGCACGGGAAATTAACAAAGAAGCG TGCAGAATCTGATTCGTAATATATGCTTATTCTCGCTTATTAATTTATTACTTTGATTATACATA TATTGATAAGATGTCTTAGTAAAGCAAGTTTATAGTTTACCTTAAAACCCATTAATACCCAACAA ATTTATCAGTTACCCGTTACTCAGTTAGTGGAAATCCGAACCGGGAATGGGATATTAATAGATAT TGATAAAATGAGAAAAACTTTAAATAGTATGAGAGTGATCCTTTG Found at