TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_2R assembled 2004-3-18 md5checksum:9f4c91a2cad3c68020b05fff1adf27ee Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 20766785 ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28 Warning! 200 characters in sequence are not A, C, G, or T Found at i: i:20623140 original size:16 final size:16 Alignment explanation
Indices: 20623119--20623151 Score: 45 Period size: 16 Copynumber: 2.1 Consensus size: 16 20623109 CCTAATATTT * * 20623119 TTTTTTTGCTCCACGC 1 TTTTTTCGCTCCAAGC * 20623135 TTTTTTCGTTCCAAGC 1 TTTTTTCGCTCCAAGC 20623151 T 1 T 20623152 CCAACCGAAA Statistics Matches: 14, Mismatches: 3, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 16 14 1.00 ACGTcount: A:0.09, C:0.27, G:0.12, T:0.52 Consensus pattern (16 bp): TTTTTTCGCTCCAAGC Left flanking sequence: Indices 20622619 -- 20623118 ATGCTTGCATCAACTGGTCTTTAACCTAAGAAAAACCATCTTCCCATAAGAGTAACCTAAATCAT TTCATTTAAAATTATCCTTCAAGTCACTTCGTATTAGTTGCTGGCCGTTTCTGTGTGCTTTCTTT TCCGTCATTTATCGGCCCACCCGCGCTCCCCAATGTCTTCTAGAAGAAATAAATTGAAAAACTCA TGGTCCCGCCTAAGATATATGAGCGTATACATGCTCACACACACACGCTCGCAAAGGTACATTCG TATGTAAGCATATTTACCCATGTACGAATCAGGCATCGCCATCATCTCCGTCCCCTCACCGGATC CGAGCTCCCCTTCCGGGTCCTTCCCGTTTCCACTCCTTTCCAGCTTTCACGTATGAGAGTGTGCA ATGCGAGTTGTATTCGTCATACACGCTGCGTTGACGTTGACTGCAACTGAGGCGCCAGCAGCGGG GCCGGCTGCGCAGCTCGGCGTCTACTCGGTATTCGCCTAATATTT Right flanking sequence: Indices 20623152 -- 20623651 CCAACCGAAAGAAAGAGCGAACGCTAGGGCAGAAAGAGAGAACAGTTCACATATATACACACACA TACAAAGCACACAGTTGTTGTTATTTGCTGCACACGAGTTGGCGCTTTAATACATATAGCGGTAT ATGAGTGTGTATGTGTGGGTGTGTGTCTTCTGACTCTTACATGATTTTTATTTCCTTTTTCAGTT GACGCTGCTGCTGTTTTTGTTGTTGCTGTTGTTTTGCTCCCCAGTTTTTAGACTCCGCCTTTTTT GTCGTCTGCATGTCTCTGGTTGTGTGTCTCTGCCACCGTCCCGCACCATTTTCAGCGGCAGAACC TCCTCGGCCCCGTACTTTCTAGTGTTGTGGGATTTTTAAGCGGCGTCTGCTTGTACTAGAAGGCT AAAATGGGTGGCAGGAGTGTTGGGCGGTGAGCCAGAGGCTGACTGGTGAAAGAGTGAATGTTTGT AGCAGTGTGCTTCGGTTTCGTTTCGTTCCATTCGCATCGTGTGAT Found at i:20625975 original size:11 final size:12 Alignment explanation
Indices: 20625951--20625976 Score: 38 Period size: 12 Copynumber: 2.2 Consensus size: 12 20625941 TTTCAATTGA 20625951 TTTTTTGCTACT 1 TTTTTTGCTACT * 20625963 TTTTTTTCT-CT 1 TTTTTTGCTACT 20625974 TTT 1 TTT 20625977 CCGATAGCAC Statistics Matches: 13, Mismatches: 1, Indels: 1 0.87 0.07 0.07 Matches are distributed among these distances: 11 5 0.38 12 8 0.62 ACGTcount: A:0.04, C:0.15, G:0.04, T:0.77 Consensus pattern (12 bp): TTTTTTGCTACT Left flanking sequence: Indices 20625451 -- 20625950 CTTACCGGTAAGGCCAGCTGAGCAGCAGTTGACTGCCATTCAATTGAAGTTTTCTTTGTACTTCC TTTTTCCGCCCACTCCGATTTCGATTTGTATCTAAATGTCATTTTTTATTTGGCATCTTTTGCAT TTTATTTGCTACAATTGCGAGCAGCCTCAACTGCGATATATTCCTTCCAGGATAAACAGCAATAT ATATATTTATTTCTCTTGTATATATGTACGCTGCCCATTTGGATACGCAATTCCGTTGACAATGT GTTGCACAGCGGCCAATGGGAATCCGCGGTGCTGTCGAAGGACTCGTCGCACGGCCGGATTTAGT TCTCAATTTTTCCCATTTCTTTGTCACTCATGCGACGCCCAAGTATGGACCCAGTGGAGTCAGAA CTGCTTGGACTTGTGCTGCTTGGGGGCATATTGCTTCGAGGGATGGTGGGTCGTGGGCGTGAGAG TTTTTTCCGCTGGGACTAGGAAATATAAAAAGTTTTTTCAATTGA Right flanking sequence: Indices 20625977 -- 20626476 CCGATAGCACGTATTCCTTTTATTTGCCGTTTCTTTCTTACTTCGGCTAGGGGAATGAGAAATTG GTTGAAATCAATTGGATTTGGTGGCATAAAGTATTTGAGCGACAGCCGGCTGATTCAGACTGCTT GGTGGCATTAGCATTTTCAATCGTCTGTGTAACGATGGTTGAGGATGGATGCTACATATGGGTTT TGATTTGCCTGGCATAGCCAAAGTAAAGCAAAATACTGAAGGGAACAGAATTACTTCAACCTATT GGTAGTTGACGTAGTAGTCATTGACACGTTGGAAGACCCCTATATAGATCTATTGTAGATACTAA TGACTACCAATCGTTTTTTTTTTAAAGAAGGTCAAGCCATTTGTAAATTTTTTTAATTAAATTAG ATGCACCAGCTTTTACCTTAGGTAATTTCGTTTCCATGACAGTAAATCAGCCTTTGCCGCTAATT TGACCAGAATTTGCACAAAGTGAACATCCCTTTTTAGAATTCTTT Found at i:20632795 original size:11 final size:12 Alignment explanation
Indices: 20632770--20632800 Score: 41 Period size: 11 Copynumber: 2.7 Consensus size: 12 20632760 ATAGGAGATG 20632770 GAAGTGGCCCCT 1 GAAGTGGCCCCT * 20632782 GAAGTGG-GCCT 1 GAAGTGGCCCCT * 20632793 GAAGAGGC 1 GAAGTGGC 20632801 ACAAGAAAAA Statistics Matches: 16, Mismatches: 2, Indels: 2 0.80 0.10 0.10 Matches are distributed among these distances: 11 9 0.56 12 7 0.44 ACGTcount: A:0.23, C:0.23, G:0.42, T:0.13 Consensus pattern (12 bp): GAAGTGGCCCCT Left flanking sequence: Indices 20632270 -- 20632769 CTTCGCTTTTTACAAATGACGCCCCGAGAGACTAAGGAGAAATCCCGTGGTTCTGAGCTCACTCC CAACAGGAGTTCTGGTATAAGTTTTAAAAAGTGTATATACATTTATCTACACAAGCAGGGGGGCA TTTAGAGTGTGTTTGAAAAGAACCCGAGAAAGTAGCAAACCGTGGAGCTGTGTTAGACAAGAGGG GCGAAGATGAAATCATTTACATGTGGCTGCGACATTACAGGAACGCGGAGGGATGATTATTAAAT GGGTGGCATGTTTAACTATAAAACGCACGCGACCAGGATGAGACCAAGGGTGGGTTGGGCGCGAA TGAAGGACCACGGTGGCTTTACATCGGGCACCCACCAAGATGCTGTCAGAGAATGGGAGCAGACA GAGGGCTCTTCGCCATCGCGAGTGGATGGACACAAACAAGGACTGCGGGGGACAATGCGTGAGGG TGGAATGAGTCATTGGTGTGGCAGCCAGCGCTGGGATAGGAGATG Right flanking sequence: Indices 20632801 -- 20633300 ACAAGAAAAAGCAGGCACTGAATTATGCAAAAGATTTACGCGCTGCCTTCCGACAGCCTTAAAAC TTTTGGGGCGTTGGCTGCTTGACGTTGTATACAATTTTTAGCCGGACTTCTCAGTGGTAATAGCG TATGACAGTTATACACTCACAGAAAGAACGCCTTTTGCCTATGCGCAACCATTGGGTATGCTAAA GTATTGGTGTGATGAGATGCAGTCTGGGAGAACTAACAAGCCCCAAATTTGTGTGCTACAAAGCC CAGGATTACCTTAGAAGTGCTCAGCAGGCCTATGGGCAAGTCACTAGATACTTTGCAGACATTGG GTTCCAGCTTATGAAGCAGTTAATCATTTCAAGAGAGCTCGAAAAAAAGAGAGACCAAAACTTTT CGTTTATGAATCCAAACTAACACTATATACATACGTCTGCATTTTGTATTAATATAAAAAAATCA AATTATGAAAAGAAAGTTTAAGCATTAACCCTTTAAAATTAGTTA Found at i:20637265 original size:12 final size:12 Alignment explanation
Indices: 20637246--20637269 Score: 34 Period size: 12 Copynumber: 2.0 Consensus size: 12 20637236 CTTGCTACTA * 20637246 CCCTTGCTGTAG 1 CCCCTGCTGTAG * 20637258 CCCCTGCTTTAG 1 CCCCTGCTGTAG 20637270 TGGCCGTTGT Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 12 10 1.00 ACGTcount: A:0.08, C:0.38, G:0.21, T:0.33 Consensus pattern (12 bp): CCCCTGCTGTAG Left flanking sequence: Indices 20636746 -- 20637245 CGACCACAGAACGCGTGCCGTGTGCGTGTAACCTAAATGGTAAGTGGTGGCCACTTACTTTTACC ACATGAGTTCGGGACAAAGTTCATTCAGTACCAGGACCGTGCCGTTTATTTGCAATGGTGTAACC TAATGCAAAGAGGTTACAAACAGAAATTTTTTGAAAAATGATAATACCATGCGAAATTCATGCAT CTTAATTCATATCAATAAAGCGACAATTCCAAAAATAATTATTCAGATCACATTAGCCCTGATCG TGTTTTTGTAGCCTGTCAAAATGGGAAACGGGCTCTACTGCCGAGATATATTTAGTCTTACCCTG GCCTTCAACACGACAACATCAAAATTTATTGTTAATTGTCAAAGTTTTTGGAGATTTGTTTTTTA AGTAAGCTAAAACATATATATTTTCCTATTTATATCTTTTAACGCATATGTGTTTAGAACTCACA TAAATTCGTGATGTGTTGCGGGCCCTGCTGTGGAACTTGCTACTA Right flanking sequence: Indices 20637270 -- 20637769 TGGCCGTTGTTTTGGACCACGATGCGGATTCTATAGTGGACCATGTGGACCTTGCTGCGGGGGCG GATGCTGCAGCAGCTGCGGACCGTCTTGTTAATTTTGGTACTCGGTAACCAAAACTTTTTGAAGA CAATTATTTATTAACATGGCCTATTCGTCTTGAAAACAAGATCAAGTCGTAATAAAGGTGTTTGA CTTTCCAAGTCTTTTTTATTACAGGAACTAGATTCCTGTCCATTACCGCTCTTTTAGACCATCAA TTACGCTGGTAATTGCCCAATGACTGCAATAAAATCCCCCTTTAGTTCCCTTGGTGTATATTGTT AGTGCTAATTTATGCGCAGCCCAAAGCAAAAGCAAAATAGTTTAATAGGCAGGACCAACACTTCA GAAGTCAGCGGGTCAGTTATAAACCAGTTGACCGAACTGACCGCTTCATATTGGGCTTGTCGCGC CTGGTCACTTCCCGTTTTACTTTTCGTCCCCTAGTTTGATTACTG Found at i:20640526 original size:13 final size:13 Alignment explanation
Indices: 20640506--20640531 Score: 45 Period size: 13 Copynumber: 2.0 Consensus size: 13 20640496 TTTATTGTAT * 20640506 TTTGACTTGTCAA 1 TTTCACTTGTCAA 20640519 TTTCACTTGTCAA 1 TTTCACTTGTCAA 20640532 CCAAAAACAT Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 13 12 1.00 ACGTcount: A:0.23, C:0.19, G:0.12, T:0.46 Consensus pattern (13 bp): TTTCACTTGTCAA Left flanking sequence: Indices 20640006 -- 20640505 AATAATGGCCTCCAACAGAGAACAAAGTCCGTTAGAGAGAGGGTTTCAGAAAAGCCGATGAAGAT GCTTAGATGACAGTCTGGCAACGCCACAGAGCATGTGCGTGTGCTGGGGTGTTGTCCTTCCAAAC GCACTTTCAACCCTTTTTGCGCTGGCGGGGAAAATTGCGTAAAGTGCAAAATACAGTGCGTACGT ATACGAGTACTTACACACACACAATCAGCTTTTTATATTATGTACACAGAAAATGTTTCATTTTA CGATATATATGTACCATGGCTTCCCTAGTAGATGGTAACTGAAAGGGTTGTCCCAGCTTGAAAAT GTTTCCCTTTGACAGTTATTGGATTTCAAAATGAAATCCATTTGATGGCAAACGAAGCTTTGATA TGTGGGTTAGCGTGGCCTTTAAAACACGGTAGTTGAATAAATTAACAGGAGAAAACAAAATAAAG AATATGGTATAAAATGAAAAATGTTTCGATATTTTTTTATTGTAT Right flanking sequence: Indices 20640532 -- 20641031 CCAAAAACATTTTGGCCACACCCCTTCTAACGCTTCACCAATCATCATCCCAAAACTGTTTTGTT ATTTTTCCCCATCTAAACTTGAATATTTTTAAAATTTTTTCTAATTTTGTTCCATCATATCTATC GATGAAATTATGAAATTTCGCGTTCGCATTCCCACTAGCTTAGTAACGGGTATCTAATAGTCGGG GATCTCGACTATAGCATTCGCTCTTGTGTTTTACTGTGGACAGTAAGTGGATCCAAAAAAAGGAT CGGGCTGGAAGGCAGCTGCATTGATCAAACATCACGTCGATGATAGTATTGAAATGCACTGGCAA CTTGCATACATATACTATGAGGCGGGAAATGGGAAAGCTGAGAATAGATGCTGCCAGAGGAAATA ACGGGTTAAATAAAAGACAATTTGAGAACGAAAACGTAAAATTCAATCACTTAACAATCAAAAAT GTAAAGGTGCCAAATATTAGGCGGAACAAAGGGATAAATTAATCG Found at i:20642267 original size:17 final size:17 Alignment explanation
Indices: 20642235--20642268 Score: 54 Period size: 17 Copynumber: 2.0 Consensus size: 17 20642225 CTGGGAAAAC ** 20642235 AATGAAAAATTCATGCA 1 AATGAAAAATAAATGCA 20642252 AATGAAAAATAAATGCA 1 AATGAAAAATAAATGCA 20642269 CACAAGCCAA Statistics Matches: 15, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 17 15 1.00 ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21 Consensus pattern (17 bp): AATGAAAAATAAATGCA Left flanking sequence: Indices 20641735 -- 20642234 TGTAAAGGATTTAGCTTTCGATTAAATCTACGTCTCTACACCCCCGAATTCTTGGAAAATGGCTA CATGCGATCCGTGGCTGCTCAAATTTATTAAATGCTCCATGCTTATATAGAAGGACGACTAACTT AATTCCTCTGAACAATGAAAATAAGTACCAGTACATATTTGTTCTTACTGTTCCTAATAACGACT TTTTAAAGCAATTGCTAGAAAGTGCAACAAAATCTGTTTGCGTTGATCCCGCAGTGCTGTCGGAG GCTACAAGAAAATATAGATTTTGCCACATTAAAAAGAAAAATATTTGCTTATGCTGCTCGGAAGT TTATCAAAAGGATAAATGTCTATATATATGTATCTCCTAATATCTACCGAGAGTCCAACGTAGTT GAGCTCGATTTGCCGGTTGATTTCCCGCGGACAAATATCGCGTGTTTGTCCTTGATCCCATGGAG CGTTAAGTGCATCCTAGCGGCAGCTCCTTTCGTGTCTGGGAAAAC Right flanking sequence: Indices 20642269 -- 20642768 CACAAGCCAAACAGGATAATGCAGCACTGAGAACCACAACGCAGTGGGAAAATAGAAGCACATTT CATGCAATTTCGGACTACGATGCTTGGCTCATGGTTTTTCTACTGTCTTGCCTCTTTTGTCTGTG GCACGAAATTTCAATAAATTATGCACAAATTTTCGTGGTTTTCGCGTTTTTTAGTTGTTTTTTTC CTTTCTGCTACACTTTACTTGTTATTTTATTCAAATTGCTGTGCATTTTATACTTTTAAGAAAGA AACTGTACGCGCAACGGTTTTAGGTTTAGAAAAGACGGAGAGGGAGTTTCAACCCTTTCGGCGCT ATCGCAGCATCCAGCTGCTTGAATTAATCCCTTTTTGGGCGATCCTCGGATATCTTTGTCTACCG ATATTGTATACTCAGGTAAACGATATACGTATGCACACATCAGTGTTCGTATGCAAATAAGATTG ATTAAAAATTTAAATAAGTCTCTTGCCAGGGGACACCTTTTTGTT Found at i:20650199 original size:99 final size:99 Alignment explanation
Indices: 20650028--20650221 Score: 353 Period size: 99 Copynumber: 2.0 Consensus size: 99 20650018 ATTGTGAAAT * 20650028 TAAAAAGTGCATAACAAAAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGA 1 TAAAAAGTGCATAAAAAAAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGA * 20650093 GTGCAGTGTATATGCCATAAGAGCATAAATTAAA 66 GTGCAGTGTATATGCCAAAAGAGCATAAATTAAA * * * 20650127 TAAAAAGTGCCTGAAAACAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGA 1 TAAAAAGTGCATAAAAAAAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGA 20650192 GTGCAGTGTATATGCCAAAAGAGCATAAAT 66 GTGCAGTGTATATGCCAAAAGAGCATAAAT 20650222 GCCGAAATAA Statistics Matches: 90, Mismatches: 5, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 99 90 1.00 ACGTcount: A:0.43, C:0.15, G:0.16, T:0.26 Consensus pattern (99 bp): TAAAAAGTGCATAAAAAAAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGA GTGCAGTGTATATGCCAAAAGAGCATAAATTAAA Left flanking sequence: Indices 20649528 -- 20650027 GATAAGGTCCTCGCCGCTCAAGATAGGCAGATGTGCCCGAGCGTGGGACCTCGATAAGGCGGGGA CTATTTACTTAGGCCTCTGCGTAGGCCATTTACTTTAAGATGCGATTCTCATGTCACCTATTTAA ACCGAAGATATTTCCAAATAAAATCAGTTTCTTACAAAAACTCAACGAGTAAAGTCTTCTTATTT GGGACTTATATTTGGTCAATCGAGCCTTTAATCGACTCTGCAGTTTCCCCCTACCAAAGGTAAGG AACTCAGAGAAAGGCCAGCTCCTTTAAGCATCTTACAGCTAAAGGTAGCAAAAATAAGTAACTCT TGTTTCCCCCTACCAAAGGTAAGGAACAGAGTATAAATATAAAAAGCAAAAGATACAAAAGAATC TTTTATGTTTTAAAACAAGCACCTTATAGTCTATAGCTAAAGGTTGCTTTGTGTACCATTATAAA TTGTGGTAAGGCGTGCTTGAGGCCATACATCAGCAATTGTGAAAT Right flanking sequence: Indices 20650222 -- 20650721 GCCGAAATAAATGGCTAAAAAACAAAAAATCTGACTGGACTACAAAAATAATAAAACGTGCCAAA AAAAAAAAAATCATCTTTAAACATCGACGGAGCCTTAAAGAAGAGAAGGAAGTCAAATTCAAAGG AGCCTCTACCAGCAGCAGAAGCAGCAACAACAGCAGCAGCAGAAGCAGCAACAGCAGTAGCAACA GCAGCAACAACAGCAACAACAGCAGCAGCAACAACAACGACATCAGCTAAGTCAAAACAAGAATT TTCTGTTTATCCAAACACACATATATATATAAATACATATAAAATACATATACACGTACTATATA TATTAAGAAATTACAAAAAATTTTCAAAATGATGTCAGAAAAGACTATTCAATTCCTTAAGAAGC AGTCCGAAATTATTTTGGAAATTAGAAAGTTGGAAGTAAAACCAACATTAACAGATGTAGAAATT CTAAAATTAAATGAGCTTCAAAAATGTTTCATTGCTAATCATAGC Found at i:20650393 original size:24 final size:24 Alignment explanation
Indices: 20650361--20650452 Score: 121 Period size: 24 Copynumber: 4.0 Consensus size: 24 20650351 GAGCCTCTAC 20650361 CAGCAGCAGAAGCAGCAACAACAG 1 CAGCAGCAGAAGCAGCAACAACAG 20650385 CAGCAGCAGAAGCAG---CAACAG 1 CAGCAGCAGAAGCAGCAACAACAG * ** 20650406 CAGTAGCAACAGCAGCAACAACAG 1 CAGCAGCAGAAGCAGCAACAACAG * * * 20650430 CAACAACAGCAGCAGCAACAACA 1 CAGCAGCAGAAGCAGCAACAACA 20650453 ACGACATCAG Statistics Matches: 58, Mismatches: 7, Indels: 6 0.82 0.10 0.08 Matches are distributed among these distances: 21 18 0.31 24 40 0.69 ACGTcount: A:0.47, C:0.30, G:0.22, T:0.01 Consensus pattern (24 bp): CAGCAGCAGAAGCAGCAACAACAG Left flanking sequence: Indices 20649861 -- 20650360 CCTACCAAAGGTAAGGAACAGAGTATAAATATAAAAAGCAAAAGATACAAAAGAATCTTTTATGT TTTAAAACAAGCACCTTATAGTCTATAGCTAAAGGTTGCTTTGTGTACCATTATAAATTGTGGTA AGGCGTGCTTGAGGCCATACATCAGCAATTGTGAAATTAAAAAGTGCATAACAAAAGTGCCTTAT AAATGCTCTAATAGCATTAAATCAGCTCATAAATAGAGTGCAGTGTATATGCCATAAGAGCATAA ATTAAATAAAAAGTGCCTGAAAACAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATA AATAGAGTGCAGTGTATATGCCAAAAGAGCATAAATGCCGAAATAAATGGCTAAAAAACAAAAAA TCTGACTGGACTACAAAAATAATAAAACGTGCCAAAAAAAAAAAAATCATCTTTAAACATCGACG GAGCCTTAAAGAAGAGAAGGAAGTCAAATTCAAAGGAGCCTCTAC Right flanking sequence: Indices 20650453 -- 20650952 ACGACATCAGCTAAGTCAAAACAAGAATTTTCTGTTTATCCAAACACACATATATATATAAATAC ATATAAAATACATATACACGTACTATATATATTAAGAAATTACAAAAAATTTTCAAAATGATGTC AGAAAAGACTATTCAATTCCTTAAGAAGCAGTCCGAAATTATTTTGGAAATTAGAAAGTTGGAAG TAAAACCAACATTAACAGATGTAGAAATTCTAAAATTAAATGAGCTTCAAAAATGTTTCATTGCT AATCATAGCAATTTGTTAAAGATCGGCGTTGTCGATCATGAATATTTTAACGCGAAGCAGTATGA TTTAATAATGATGGTGTTAGAAAAAATTAAAAATAAAAATGAAAAAATTAAGGGCGAGTCGGTAG AAAACACTTTCCCTAAATCAAACACTGTCCCTAAATCAAACCCTCCCCCTACATTAAACCTTGAA ATGCGTGGTCACCCTGAAAAAGAGGGTATAGCACAAAACAACGCT Found at i:20650463 original size:24 final size:24 Alignment explanation
Indices: 20650361--20650463 Score: 115 Period size: 24 Copynumber: 4.3 Consensus size: 24 20650351 GAGCCTCTAC * * 20650361 CAGCAGCAGAAGCAGCAACAACAG 1 CAGCAGCAGAAGCAACAACAACAA * * * 20650385 CAGCAGCAGAAGCAGCAACAGCAG 1 CAGCAGCAGAAGCAACAACAACAA * * * * 20650409 TAGCAACAGCAGCAACAACAGCAA 1 CAGCAGCAGAAGCAACAACAACAA * * * 20650433 CAACAGCAGCAGCAACAACAACGA 1 CAGCAGCAGAAGCAACAACAACAA * 20650457 CATCAGC 1 CAGCAGC 20650464 TAAGTCAAAA Statistics Matches: 67, Mismatches: 12, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 24 67 1.00 ACGTcount: A:0.46, C:0.31, G:0.21, T:0.02 Consensus pattern (24 bp): CAGCAGCAGAAGCAACAACAACAA Left flanking sequence: Indices 20649861 -- 20650360 CCTACCAAAGGTAAGGAACAGAGTATAAATATAAAAAGCAAAAGATACAAAAGAATCTTTTATGT TTTAAAACAAGCACCTTATAGTCTATAGCTAAAGGTTGCTTTGTGTACCATTATAAATTGTGGTA AGGCGTGCTTGAGGCCATACATCAGCAATTGTGAAATTAAAAAGTGCATAACAAAAGTGCCTTAT AAATGCTCTAATAGCATTAAATCAGCTCATAAATAGAGTGCAGTGTATATGCCATAAGAGCATAA ATTAAATAAAAAGTGCCTGAAAACAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATA AATAGAGTGCAGTGTATATGCCAAAAGAGCATAAATGCCGAAATAAATGGCTAAAAAACAAAAAA TCTGACTGGACTACAAAAATAATAAAACGTGCCAAAAAAAAAAAAATCATCTTTAAACATCGACG GAGCCTTAAAGAAGAGAAGGAAGTCAAATTCAAAGGAGCCTCTAC Right flanking sequence: Indices 20650464 -- 20650963 TAAGTCAAAACAAGAATTTTCTGTTTATCCAAACACACATATATATATAAATACATATAAAATAC ATATACACGTACTATATATATTAAGAAATTACAAAAAATTTTCAAAATGATGTCAGAAAAGACTA TTCAATTCCTTAAGAAGCAGTCCGAAATTATTTTGGAAATTAGAAAGTTGGAAGTAAAACCAACA TTAACAGATGTAGAAATTCTAAAATTAAATGAGCTTCAAAAATGTTTCATTGCTAATCATAGCAA TTTGTTAAAGATCGGCGTTGTCGATCATGAATATTTTAACGCGAAGCAGTATGATTTAATAATGA TGGTGTTAGAAAAAATTAAAAATAAAAATGAAAAAATTAAGGGCGAGTCGGTAGAAAACACTTTC CCTAAATCAAACACTGTCCCTAAATCAAACCCTCCCCCTACATTAAACCTTGAAATGCGTGGTCA CCCTGAAAAAGAGGGTATAGCACAAAACAACGCTTTAAAAGTAGA Found at i:20650528 original size:11 final size:12 Alignment explanation
Indices: 20650502--20650533 Score: 50 Period size: 11 Copynumber: 2.8 Consensus size: 12 20650492 CCAAACACAC * 20650502 ATATATATATAA 1 ATACATATATAA 20650514 ATACATATA-AA 1 ATACATATATAA 20650525 ATACATATA 1 ATACATATA 20650534 CACGTACTAT Statistics Matches: 19, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 11 11 0.58 12 8 0.42 ACGTcount: A:0.59, C:0.06, G:0.00, T:0.34 Consensus pattern (12 bp): ATACATATATAA Left flanking sequence: Indices 20650002 -- 20650501 AGGCCATACATCAGCAATTGTGAAATTAAAAAGTGCATAACAAAAGTGCCTTATAAATGCTCTAA TAGCATTAAATCAGCTCATAAATAGAGTGCAGTGTATATGCCATAAGAGCATAAATTAAATAAAA AGTGCCTGAAAACAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGAGTGCA GTGTATATGCCAAAAGAGCATAAATGCCGAAATAAATGGCTAAAAAACAAAAAATCTGACTGGAC TACAAAAATAATAAAACGTGCCAAAAAAAAAAAAATCATCTTTAAACATCGACGGAGCCTTAAAG AAGAGAAGGAAGTCAAATTCAAAGGAGCCTCTACCAGCAGCAGAAGCAGCAACAACAGCAGCAGC AGAAGCAGCAACAGCAGTAGCAACAGCAGCAACAACAGCAACAACAGCAGCAGCAACAACAACGA CATCAGCTAAGTCAAAACAAGAATTTTCTGTTTATCCAAACACAC Right flanking sequence: Indices 20650534 -- 20651033 CACGTACTATATATATTAAGAAATTACAAAAAATTTTCAAAATGATGTCAGAAAAGACTATTCAA TTCCTTAAGAAGCAGTCCGAAATTATTTTGGAAATTAGAAAGTTGGAAGTAAAACCAACATTAAC AGATGTAGAAATTCTAAAATTAAATGAGCTTCAAAAATGTTTCATTGCTAATCATAGCAATTTGT TAAAGATCGGCGTTGTCGATCATGAATATTTTAACGCGAAGCAGTATGATTTAATAATGATGGTG TTAGAAAAAATTAAAAATAAAAATGAAAAAATTAAGGGCGAGTCGGTAGAAAACACTTTCCCTAA ATCAAACACTGTCCCTAAATCAAACCCTCCCCCTACATTAAACCTTGAAATGCGTGGTCACCCTG AAAAAGAGGGTATAGCACAAAACAACGCTTTAAAAGTAGAGCAGGCATTTCGTAATAATGTTGGC CAATTTCGAGTATATCTAGAAGATACGTCTAAACTAATAGACAGT Found at i:20650867 original size:18 final size:18 Alignment explanation
Indices: 20650844--20650901 Score: 74 Period size: 18 Copynumber: 3.2 Consensus size: 18 20650834 AGTCGGTAGA * 20650844 AAACACTTTCCCTAAATC 1 AAACACTCTCCCTAAATC * 20650862 AAACACTGTCCCTAAATC 1 AAACACTCTCCCTAAATC * * * * 20650880 AAACCCTCCCCCTACATT 1 AAACACTCTCCCTAAATC 20650898 AAAC 1 AAAC 20650902 CTTGAAATGC Statistics Matches: 34, Mismatches: 6, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 18 34 1.00 ACGTcount: A:0.38, C:0.38, G:0.02, T:0.22 Consensus pattern (18 bp): AAACACTCTCCCTAAATC Left flanking sequence: Indices 20650344 -- 20650843 TTCAAAGGAGCCTCTACCAGCAGCAGAAGCAGCAACAACAGCAGCAGCAGAAGCAGCAACAGCAG TAGCAACAGCAGCAACAACAGCAACAACAGCAGCAGCAACAACAACGACATCAGCTAAGTCAAAA CAAGAATTTTCTGTTTATCCAAACACACATATATATATAAATACATATAAAATACATATACACGT ACTATATATATTAAGAAATTACAAAAAATTTTCAAAATGATGTCAGAAAAGACTATTCAATTCCT TAAGAAGCAGTCCGAAATTATTTTGGAAATTAGAAAGTTGGAAGTAAAACCAACATTAACAGATG TAGAAATTCTAAAATTAAATGAGCTTCAAAAATGTTTCATTGCTAATCATAGCAATTTGTTAAAG ATCGGCGTTGTCGATCATGAATATTTTAACGCGAAGCAGTATGATTTAATAATGATGGTGTTAGA AAAAATTAAAAATAAAAATGAAAAAATTAAGGGCGAGTCGGTAGA Right flanking sequence: Indices 20650902 -- 20651401 CTTGAAATGCGTGGTCACCCTGAAAAAGAGGGTATAGCACAAAACAACGCTTTAAAAGTAGAGCA GGCATTTCGTAATAATGTTGGCCAATTTCGAGTATATCTAGAAGATACGTCTAAACTAATAGACA GTAGTCCAGATTTCCTTAAAATAAGGAAAAATAAAATTGAATTTTTATGGCATAAAATAGATAAC CTGATTGAACAGGTGAATAGTCATTTTGAGAGTTCGCTATTCGAAGAAGAAATTAGCGAACTTGA ATTTGACAAACAAAATATTCTTACAGCCATTAATAGTCGACTCAGTGGCACAATAAATAAAGCTG AAATGTCGACGGTTGTTAAGGCGGAGGAGTTACCAACCCTGCCTAAAATACAGATTCCCACCTTC TTTGGTGATTCCAAAGAATGGGATCTTTTTAATGAACTCTTTACAGAGCTCATACATGTGAGAGA GGATCTCAGTCCTTCTCTCAAATTTAATTATCTAAAGTCAGCATT Found at i:20657837 original size:99 final size:99 Alignment explanation
Indices: 20657666--20657958 Score: 551 Period size: 99 Copynumber: 3.0 Consensus size: 99 20657656 ATTGTGGAAT * * * * 20657666 TAAAAAGTGCATAACAAAAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGA 1 TAAAAAGTGCCTGAAAACAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGA 20657731 GTGCAGTGTATATGCCATAAGAGCATAAATTAAA 66 GTGCAGTGTATATGCCATAAGAGCATAAATTAAA 20657765 TAAAAAGTGCCTGAAAACAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGA 1 TAAAAAGTGCCTGAAAACAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGA 20657830 GTGCAGTGTATATGCCATAAGAGCATAAATTAAA 66 GTGCAGTGTATATGCCATAAGAGCATAAATTAAA 20657864 TAAAAAGTGCCTGAAAACAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGA 1 TAAAAAGTGCCTGAAAACAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGA * 20657929 GTGCAGTGTATATGCCAAAAGAGCATAAAT 66 GTGCAGTGTATATGCCATAAGAGCATAAAT 20657959 GCCGAAATAA Statistics Matches: 189, Mismatches: 5, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 99 189 1.00 ACGTcount: A:0.43, C:0.15, G:0.16, T:0.26 Consensus pattern (99 bp): TAAAAAGTGCCTGAAAACAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGA GTGCAGTGTATATGCCATAAGAGCATAAATTAAA Left flanking sequence: Indices 20657166 -- 20657665 ATAAGGTCCTCGCCGCTCAAGATAGGCAGATGTGCCCGAGCGTGGGACCTCGATAAGGCGGGGAC TATTTACGTAGGCCTCTGCGTAGGCCATTTACTCTAAGATGCGATTCTCATGTCACCTATTTAAA CCGAAGATATCTACAAATAAAATTAGTTTCTTACAAAAACTCAACGAGTAAAGTCTTCTCATTTG GGATTTTACATTTGGTCAATCGAGCCTTTAATCGACTCTGCAGTTTCCCCCTACCAAAGGTAAGG AACTCAGAGAAAGGCCAGCTCCTTTAAGCATCTTACAGCTAAAGGTAGCAAAAATAAGTAACTCT TGTTTCCCCCTACCAAAGGTAAGGAACAGAGTATAAATATAAAAAGCAAAAGATACAAAAGAATC TTTTATGTTTTAAAACAAGCACCTTATAGTCTATAGCTAAAGGTTGCTTTGTGTACCATTATAAA TTGTGGTAAGGCGTGCTTGAGGCCATACATCAGCAATTGTGGAAT Right flanking sequence: Indices 20657959 -- 20658458 GCCGAAATAAATGGCTAAAAAACAAAAAATCTGACTGGACTACAAAAATAATAAAACGTGCCAAA AAAAAAAAAAAAAAAAATCATCTTTAAACATCGACGGAGCCTTAAAGAAGAGAAGGAAGTCAAAT TCAAAGGAGCCTCTACCAGCAGCAGAAGCAGCAACAACAGCAGCAGCAGAAGCAGCAACAGCAGT AGCAACAGCAGCAACAACAGCAACAACAGCAGCAGCAACAACAACGACATCAGCTAAGTCAAAAC AAGAATTTTCTGTTTATCCAAACACACATATATATATAAATACATATAAAATACATATACACGTA CTATATATATTAAGAAATTACAAAAAATTTTCAAAATGATGTCAGAAAAGACTATTCAATTCCTT AAGAAGCAGTCCGAAATTATTTTGGAAATTAGAAAGTTGGAAGTAAAATTGGGATTTTACATTTG GTCAATCGAGCCTTTAATCGACTCTGCAGTTTCCCCCTACCAAAG Found at i:20658137 original size:24 final size:24 Alignment explanation
Indices: 20658105--20658196 Score: 121 Period size: 24 Copynumber: 4.0 Consensus size: 24 20658095 GAGCCTCTAC 20658105 CAGCAGCAGAAGCAGCAACAACAG 1 CAGCAGCAGAAGCAGCAACAACAG 20658129 CAGCAGCAGAAGCAG---CAACAG 1 CAGCAGCAGAAGCAGCAACAACAG * ** 20658150 CAGTAGCAACAGCAGCAACAACAG 1 CAGCAGCAGAAGCAGCAACAACAG * * * 20658174 CAACAACAGCAGCAGCAACAACA 1 CAGCAGCAGAAGCAGCAACAACA 20658197 ACGACATCAG Statistics Matches: 58, Mismatches: 7, Indels: 6 0.82 0.10 0.08 Matches are distributed among these distances: 21 18 0.31 24 40 0.69 ACGTcount: A:0.47, C:0.30, G:0.22, T:0.01 Consensus pattern (24 bp): CAGCAGCAGAAGCAGCAACAACAG Left flanking sequence: Indices 20657605 -- 20658104 TGTGTACCATTATAAATTGTGGTAAGGCGTGCTTGAGGCCATACATCAGCAATTGTGGAATTAAA AAGTGCATAACAAAAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGAGTGC AGTGTATATGCCATAAGAGCATAAATTAAATAAAAAGTGCCTGAAAACAGTGCCTTATAAATGCT CTAATAGCATTAAATCAGCTCATAAATAGAGTGCAGTGTATATGCCATAAGAGCATAAATTAAAT AAAAAGTGCCTGAAAACAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGAG TGCAGTGTATATGCCAAAAGAGCATAAATGCCGAAATAAATGGCTAAAAAACAAAAAATCTGACT GGACTACAAAAATAATAAAACGTGCCAAAAAAAAAAAAAAAAAAAATCATCTTTAAACATCGACG GAGCCTTAAAGAAGAGAAGGAAGTCAAATTCAAAGGAGCCTCTAC Right flanking sequence: Indices 20658197 -- 20658696 ACGACATCAGCTAAGTCAAAACAAGAATTTTCTGTTTATCCAAACACACATATATATATAAATAC ATATAAAATACATATACACGTACTATATATATTAAGAAATTACAAAAAATTTTCAAAATGATGTC AGAAAAGACTATTCAATTCCTTAAGAAGCAGTCCGAAATTATTTTGGAAATTAGAAAGTTGGAAG TAAAATTGGGATTTTACATTTGGTCAATCGAGCCTTTAATCGACTCTGCAGTTTCCCCCTACCAA AGGTAAGGAACTCAGAGAAAGGCCAGCTCCTTTAAGCATCTTACAGCTAAAGGTAGCAAAAATAA GTGACTCTTGTTTCCCCCTACCAAAGGTAAGGAACAGAGTATAAATATAAAAAGCAAAAAGATAC AAAAGAATCTTTTATGTTTTAAAACAAGCACCTTATAGTCTATAGCTAAAGGTTGCTTTGTGTAC CATTATAAATTGTGGTAAGGCGTGCTTGAGGCCATACATCAGCAA Found at i:20658207 original size:24 final size:24 Alignment explanation
Indices: 20658105--20658207 Score: 115 Period size: 24 Copynumber: 4.3 Consensus size: 24 20658095 GAGCCTCTAC * * 20658105 CAGCAGCAGAAGCAGCAACAACAG 1 CAGCAGCAGAAGCAACAACAACAA * * * 20658129 CAGCAGCAGAAGCAGCAACAGCAG 1 CAGCAGCAGAAGCAACAACAACAA * * * * 20658153 TAGCAACAGCAGCAACAACAGCAA 1 CAGCAGCAGAAGCAACAACAACAA * * * 20658177 CAACAGCAGCAGCAACAACAACGA 1 CAGCAGCAGAAGCAACAACAACAA * 20658201 CATCAGC 1 CAGCAGC 20658208 TAAGTCAAAA Statistics Matches: 67, Mismatches: 12, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 24 67 1.00 ACGTcount: A:0.46, C:0.31, G:0.21, T:0.02 Consensus pattern (24 bp): CAGCAGCAGAAGCAACAACAACAA Left flanking sequence: Indices 20657605 -- 20658104 TGTGTACCATTATAAATTGTGGTAAGGCGTGCTTGAGGCCATACATCAGCAATTGTGGAATTAAA AAGTGCATAACAAAAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGAGTGC AGTGTATATGCCATAAGAGCATAAATTAAATAAAAAGTGCCTGAAAACAGTGCCTTATAAATGCT CTAATAGCATTAAATCAGCTCATAAATAGAGTGCAGTGTATATGCCATAAGAGCATAAATTAAAT AAAAAGTGCCTGAAAACAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGAG TGCAGTGTATATGCCAAAAGAGCATAAATGCCGAAATAAATGGCTAAAAAACAAAAAATCTGACT GGACTACAAAAATAATAAAACGTGCCAAAAAAAAAAAAAAAAAAAATCATCTTTAAACATCGACG GAGCCTTAAAGAAGAGAAGGAAGTCAAATTCAAAGGAGCCTCTAC Right flanking sequence: Indices 20658208 -- 20658707 TAAGTCAAAACAAGAATTTTCTGTTTATCCAAACACACATATATATATAAATACATATAAAATAC ATATACACGTACTATATATATTAAGAAATTACAAAAAATTTTCAAAATGATGTCAGAAAAGACTA TTCAATTCCTTAAGAAGCAGTCCGAAATTATTTTGGAAATTAGAAAGTTGGAAGTAAAATTGGGA TTTTACATTTGGTCAATCGAGCCTTTAATCGACTCTGCAGTTTCCCCCTACCAAAGGTAAGGAAC TCAGAGAAAGGCCAGCTCCTTTAAGCATCTTACAGCTAAAGGTAGCAAAAATAAGTGACTCTTGT TTCCCCCTACCAAAGGTAAGGAACAGAGTATAAATATAAAAAGCAAAAAGATACAAAAGAATCTT TTATGTTTTAAAACAAGCACCTTATAGTCTATAGCTAAAGGTTGCTTTGTGTACCATTATAAATT GTGGTAAGGCGTGCTTGAGGCCATACATCAGCAATTGTGAAATTA Found at i:20658272 original size:11 final size:12 Alignment explanation
Indices: 20658246--20658277 Score: 50 Period size: 11 Copynumber: 2.8 Consensus size: 12 20658236 CCAAACACAC * 20658246 ATATATATATAA 1 ATACATATATAA 20658258 ATACATATA-AA 1 ATACATATATAA 20658269 ATACATATA 1 ATACATATA 20658278 CACGTACTAT Statistics Matches: 19, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 11 11 0.58 12 8 0.42 ACGTcount: A:0.59, C:0.06, G:0.00, T:0.34 Consensus pattern (12 bp): ATACATATATAA Left flanking sequence: Indices 20657746 -- 20658245 CATAAGAGCATAAATTAAATAAAAAGTGCCTGAAAACAGTGCCTTATAAATGCTCTAATAGCATT AAATCAGCTCATAAATAGAGTGCAGTGTATATGCCATAAGAGCATAAATTAAATAAAAAGTGCCT GAAAACAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGAGTGCAGTGTATA TGCCAAAAGAGCATAAATGCCGAAATAAATGGCTAAAAAACAAAAAATCTGACTGGACTACAAAA ATAATAAAACGTGCCAAAAAAAAAAAAAAAAAAAATCATCTTTAAACATCGACGGAGCCTTAAAG AAGAGAAGGAAGTCAAATTCAAAGGAGCCTCTACCAGCAGCAGAAGCAGCAACAACAGCAGCAGC AGAAGCAGCAACAGCAGTAGCAACAGCAGCAACAACAGCAACAACAGCAGCAGCAACAACAACGA CATCAGCTAAGTCAAAACAAGAATTTTCTGTTTATCCAAACACAC Right flanking sequence: Indices 20658278 -- 20658777 CACGTACTATATATATTAAGAAATTACAAAAAATTTTCAAAATGATGTCAGAAAAGACTATTCAA TTCCTTAAGAAGCAGTCCGAAATTATTTTGGAAATTAGAAAGTTGGAAGTAAAATTGGGATTTTA CATTTGGTCAATCGAGCCTTTAATCGACTCTGCAGTTTCCCCCTACCAAAGGTAAGGAACTCAGA GAAAGGCCAGCTCCTTTAAGCATCTTACAGCTAAAGGTAGCAAAAATAAGTGACTCTTGTTTCCC CCTACCAAAGGTAAGGAACAGAGTATAAATATAAAAAGCAAAAAGATACAAAAGAATCTTTTATG TTTTAAAACAAGCACCTTATAGTCTATAGCTAAAGGTTGCTTTGTGTACCATTATAAATTGTGGT AAGGCGTGCTTGAGGCCATACATCAGCAATTGTGAAATTAAAAAGTGCATAACAAAAGTGCCTTA TAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGAGTGCAGT Found at i:20658877 original size:99 final size:99 Alignment explanation
Indices: 20658706--20658899 Score: 353 Period size: 99 Copynumber: 2.0 Consensus size: 99 20658696 ATTGTGAAAT * 20658706 TAAAAAGTGCATAACAAAAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGA 1 TAAAAAGTGCATAAAAAAAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGA * 20658771 GTGCAGTGTATATGCCATAAGAGCATAAATTAAA 66 GTGCAGTGTATATGCCAAAAGAGCATAAATTAAA * * * 20658805 TAAAAAGTGCCTGAAAACAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGA 1 TAAAAAGTGCATAAAAAAAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGA 20658870 GTGCAGTGTATATGCCAAAAGAGCATAAAT 66 GTGCAGTGTATATGCCAAAAGAGCATAAAT 20658900 GCCGAAATAA Statistics Matches: 90, Mismatches: 5, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 99 90 1.00 ACGTcount: A:0.43, C:0.15, G:0.16, T:0.26 Consensus pattern (99 bp): TAAAAAGTGCATAAAAAAAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGA GTGCAGTGTATATGCCAAAAGAGCATAAATTAAA Left flanking sequence: Indices 20658206 -- 20658705 GCTAAGTCAAAACAAGAATTTTCTGTTTATCCAAACACACATATATATATAAATACATATAAAAT ACATATACACGTACTATATATATTAAGAAATTACAAAAAATTTTCAAAATGATGTCAGAAAAGAC TATTCAATTCCTTAAGAAGCAGTCCGAAATTATTTTGGAAATTAGAAAGTTGGAAGTAAAATTGG GATTTTACATTTGGTCAATCGAGCCTTTAATCGACTCTGCAGTTTCCCCCTACCAAAGGTAAGGA ACTCAGAGAAAGGCCAGCTCCTTTAAGCATCTTACAGCTAAAGGTAGCAAAAATAAGTGACTCTT GTTTCCCCCTACCAAAGGTAAGGAACAGAGTATAAATATAAAAAGCAAAAAGATACAAAAGAATC TTTTATGTTTTAAAACAAGCACCTTATAGTCTATAGCTAAAGGTTGCTTTGTGTACCATTATAAA TTGTGGTAAGGCGTGCTTGAGGCCATACATCAGCAATTGTGAAAT Right flanking sequence: Indices 20658900 -- 20659399 GCCGAAATAAATGGCTAAAAAACAAAAAATCTGACTGGACTACAAAAATAATAAAACGTGCCAAA AAAAAAAAAATCATCTTTAAACATCGACGGAGCCTTAAAGAAGAGAAGGAAGTCAAATTCAAAGG AGCCTCTACCAGCAGCAGAAGCAGCAACAACAGCAGCAGCAGAAGCAGCAACAGCAGTAGCAACA GCAGCAACAACAGCAGCAACAGCAGCAGCAACAACAACGACATCAGCTAAGTCAAAACAAGAATT TTCTGTTTATCCAAACACACATATATATATAAATACATATAAAATACATATACACGTACTATATA TATTAAGAAATTACAAAAAATTTTCAAAATGATGTCAGAAAAGACTATTCAATTCCTTAAGAAGC AGTCCGAAATTATTTTGGAAATTAGAAAGTTGGAAGTAAAACCAACATTAACAGATGTAGAAATT CTAAAATTAAATGAGCTTCAAAAATGTTTCATTGCTAATCATAGC Found at i:20659064 original size:12 final size:12 Alignment explanation
Indices: 20659039--20659130 Score: 114 Period size: 12 Copynumber: 7.7 Consensus size: 12 20659029 GAGCCTCTAC * * 20659039 CAGCAGCAGAAG 1 CAGCAACAGCAG * 20659051 CAGCAACAACAG 1 CAGCAACAGCAG * * 20659063 CAGCAGCAGAAG 1 CAGCAACAGCAG 20659075 CAGCAACAGCAG 1 CAGCAACAGCAG * 20659087 TAGCAACAGCAG 1 CAGCAACAGCAG * 20659099 CAACAACAGCAG 1 CAGCAACAGCAG * * 20659111 CAACAGCAGCAG 1 CAGCAACAGCAG * 20659123 CAACAACA 1 CAGCAACA 20659131 ACGACATCAG Statistics Matches: 67, Mismatches: 13, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 12 67 1.00 ACGTcount: A:0.46, C:0.30, G:0.23, T:0.01 Consensus pattern (12 bp): CAGCAACAGCAG Left flanking sequence: Indices 20658539 -- 20659038 CTACCAAAGGTAAGGAACAGAGTATAAATATAAAAAGCAAAAAGATACAAAAGAATCTTTTATGT TTTAAAACAAGCACCTTATAGTCTATAGCTAAAGGTTGCTTTGTGTACCATTATAAATTGTGGTA AGGCGTGCTTGAGGCCATACATCAGCAATTGTGAAATTAAAAAGTGCATAACAAAAGTGCCTTAT AAATGCTCTAATAGCATTAAATCAGCTCATAAATAGAGTGCAGTGTATATGCCATAAGAGCATAA ATTAAATAAAAAGTGCCTGAAAACAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATA AATAGAGTGCAGTGTATATGCCAAAAGAGCATAAATGCCGAAATAAATGGCTAAAAAACAAAAAA TCTGACTGGACTACAAAAATAATAAAACGTGCCAAAAAAAAAAAAATCATCTTTAAACATCGACG GAGCCTTAAAGAAGAGAAGGAAGTCAAATTCAAAGGAGCCTCTAC Right flanking sequence: Indices 20659131 -- 20659630 ACGACATCAGCTAAGTCAAAACAAGAATTTTCTGTTTATCCAAACACACATATATATATAAATAC ATATAAAATACATATACACGTACTATATATATTAAGAAATTACAAAAAATTTTCAAAATGATGTC AGAAAAGACTATTCAATTCCTTAAGAAGCAGTCCGAAATTATTTTGGAAATTAGAAAGTTGGAAG TAAAACCAACATTAACAGATGTAGAAATTCTAAAATTAAATGAGCTTCAAAAATGTTTCATTGCT AATCATAGCAATTTGTTAAAGATCGGCGTTGTCGATCATGAATATTTTAACGCGAAGCAGTATGA TTTAATAATGATGGTGTTAGAAAAAATTAAAAATAAAAATGAAAAAATTAAGGGCGAGTCGGTAG AAAACACTTTCCCTAAATCAAACACTGTCCCTAAATCAAACCCTCCCCCTACATTAAACCTTGAA ATGCGTGGTCACCCTGAAAAAGAGGGTATAGCACAAAACAACGCT Found at i:20659071 original size:24 final size:24 Alignment explanation
Indices: 20659039--20659130 Score: 128 Period size: 24 Copynumber: 4.0 Consensus size: 24 20659029 GAGCCTCTAC 20659039 CAGCAGCAGAAGCAGCAACAACAG 1 CAGCAGCAGAAGCAGCAACAACAG 20659063 CAGCAGCAGAAGCAG---CAACAG 1 CAGCAGCAGAAGCAGCAACAACAG * ** 20659084 CAGTAGCAACAGCAGCAACAACAG 1 CAGCAGCAGAAGCAGCAACAACAG * * 20659108 CAGCAACAGCAGCAGCAACAACA 1 CAGCAGCAGAAGCAGCAACAACA 20659131 ACGACATCAG Statistics Matches: 59, Mismatches: 6, Indels: 6 0.83 0.08 0.08 Matches are distributed among these distances: 21 18 0.31 24 41 0.69 ACGTcount: A:0.46, C:0.30, G:0.23, T:0.01 Consensus pattern (24 bp): CAGCAGCAGAAGCAGCAACAACAG Left flanking sequence: Indices 20658539 -- 20659038 CTACCAAAGGTAAGGAACAGAGTATAAATATAAAAAGCAAAAAGATACAAAAGAATCTTTTATGT TTTAAAACAAGCACCTTATAGTCTATAGCTAAAGGTTGCTTTGTGTACCATTATAAATTGTGGTA AGGCGTGCTTGAGGCCATACATCAGCAATTGTGAAATTAAAAAGTGCATAACAAAAGTGCCTTAT AAATGCTCTAATAGCATTAAATCAGCTCATAAATAGAGTGCAGTGTATATGCCATAAGAGCATAA ATTAAATAAAAAGTGCCTGAAAACAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATA AATAGAGTGCAGTGTATATGCCAAAAGAGCATAAATGCCGAAATAAATGGCTAAAAAACAAAAAA TCTGACTGGACTACAAAAATAATAAAACGTGCCAAAAAAAAAAAAATCATCTTTAAACATCGACG GAGCCTTAAAGAAGAGAAGGAAGTCAAATTCAAAGGAGCCTCTAC Right flanking sequence: Indices 20659131 -- 20659630 ACGACATCAGCTAAGTCAAAACAAGAATTTTCTGTTTATCCAAACACACATATATATATAAATAC ATATAAAATACATATACACGTACTATATATATTAAGAAATTACAAAAAATTTTCAAAATGATGTC AGAAAAGACTATTCAATTCCTTAAGAAGCAGTCCGAAATTATTTTGGAAATTAGAAAGTTGGAAG TAAAACCAACATTAACAGATGTAGAAATTCTAAAATTAAATGAGCTTCAAAAATGTTTCATTGCT AATCATAGCAATTTGTTAAAGATCGGCGTTGTCGATCATGAATATTTTAACGCGAAGCAGTATGA TTTAATAATGATGGTGTTAGAAAAAATTAAAAATAAAAATGAAAAAATTAAGGGCGAGTCGGTAG AAAACACTTTCCCTAAATCAAACACTGTCCCTAAATCAAACCCTCCCCCTACATTAAACCTTGAA ATGCGTGGTCACCCTGAAAAAGAGGGTATAGCACAAAACAACGCT Found at i:20659206 original size:11 final size:12 Alignment explanation
Indices: 20659180--20659211 Score: 50 Period size: 11 Copynumber: 2.8 Consensus size: 12 20659170 CCAAACACAC * 20659180 ATATATATATAA 1 ATACATATATAA 20659192 ATACATATA-AA 1 ATACATATATAA 20659203 ATACATATA 1 ATACATATA 20659212 CACGTACTAT Statistics Matches: 19, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 11 11 0.58 12 8 0.42 ACGTcount: A:0.59, C:0.06, G:0.00, T:0.34 Consensus pattern (12 bp): ATACATATATAA Left flanking sequence: Indices 20658680 -- 20659179 AGGCCATACATCAGCAATTGTGAAATTAAAAAGTGCATAACAAAAGTGCCTTATAAATGCTCTAA TAGCATTAAATCAGCTCATAAATAGAGTGCAGTGTATATGCCATAAGAGCATAAATTAAATAAAA AGTGCCTGAAAACAGTGCCTTATAAATGCTCTAATAGCATTAAATCAGCTCATAAATAGAGTGCA GTGTATATGCCAAAAGAGCATAAATGCCGAAATAAATGGCTAAAAAACAAAAAATCTGACTGGAC TACAAAAATAATAAAACGTGCCAAAAAAAAAAAAATCATCTTTAAACATCGACGGAGCCTTAAAG AAGAGAAGGAAGTCAAATTCAAAGGAGCCTCTACCAGCAGCAGAAGCAGCAACAACAGCAGCAGC AGAAGCAGCAACAGCAGTAGCAACAGCAGCAACAACAGCAGCAACAGCAGCAGCAACAACAACGA CATCAGCTAAGTCAAAACAAGAATTTTCTGTTTATCCAAACACAC Right flanking sequence: Indices 20659212 -- 20659711 CACGTACTATATATATTAAGAAATTACAAAAAATTTTCAAAATGATGTCAGAAAAGACTATTCAA TTCCTTAAGAAGCAGTCCGAAATTATTTTGGAAATTAGAAAGTTGGAAGTAAAACCAACATTAAC AGATGTAGAAATTCTAAAATTAAATGAGCTTCAAAAATGTTTCATTGCTAATCATAGCAATTTGT TAAAGATCGGCGTTGTCGATCATGAATATTTTAACGCGAAGCAGTATGATTTAATAATGATGGTG TTAGAAAAAATTAAAAATAAAAATGAAAAAATTAAGGGCGAGTCGGTAGAAAACACTTTCCCTAA ATCAAACACTGTCCCTAAATCAAACCCTCCCCCTACATTAAACCTTGAAATGCGTGGTCACCCTG AAAAAGAGGGTATAGCACAAAACAACGCTTTAAAAGTAGAGCAGGCATTTCGTAATAATGTTGGC CAATTTCGAGTATATCTAGAAGATACGTCTAAACTAATAGACAGT Found at i:20659545 original size:18 final size:18 Alignment explanation
Indices: 20659522--20659579 Score: 74 Period size: 18 Copynumber: 3.2 Consensus size: 18 20659512 AGTCGGTAGA * 20659522 AAACACTTTCCCTAAATC 1 AAACACTCTCCCTAAATC * 20659540 AAACACTGTCCCTAAATC 1 AAACACTCTCCCTAAATC * * * * 20659558 AAACCCTCCCCCTACATT 1 AAACACTCTCCCTAAATC 20659576 AAAC 1 AAAC 20659580 CTTGAAATGC Statistics Matches: 34, Mismatches: 6, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 18 34 1.00 ACGTcount: A:0.38, C:0.38, G:0.02, T:0.22 Consensus pattern (18 bp): AAACACTCTCCCTAAATC Left flanking sequence: Indices 20659022 -- 20659521 TTCAAAGGAGCCTCTACCAGCAGCAGAAGCAGCAACAACAGCAGCAGCAGAAGCAGCAACAGCAG TAGCAACAGCAGCAACAACAGCAGCAACAGCAGCAGCAACAACAACGACATCAGCTAAGTCAAAA CAAGAATTTTCTGTTTATCCAAACACACATATATATATAAATACATATAAAATACATATACACGT ACTATATATATTAAGAAATTACAAAAAATTTTCAAAATGATGTCAGAAAAGACTATTCAATTCCT TAAGAAGCAGTCCGAAATTATTTTGGAAATTAGAAAGTTGGAAGTAAAACCAACATTAACAGATG TAGAAATTCTAAAATTAAATGAGCTTCAAAAATGTTTCATTGCTAATCATAGCAATTTGTTAAAG ATCGGCGTTGTCGATCATGAATATTTTAACGCGAAGCAGTATGATTTAATAATGATGGTGTTAGA AAAAATTAAAAATAAAAATGAAAAAATTAAGGGCGAGTCGGTAGA Right flanking sequence: Indices 20659580 -- 20660079 CTTGAAATGCGTGGTCACCCTGAAAAAGAGGGTATAGCACAAAACAACGCTTTAAAAGTAGAGCA GGCATTTCGTAATAATGTTGGCCAATTTCGAGTATATCTAGAAGATACGTCTAAACTAATAGACA GTAGTCCAGATTTCCTTAAAATAAGGAAAAATAAAATTGAATTTTTATGGCATAAAATAGATAAC CTGATTGAACAGGTGAATAGTCATTTTGAGAGTTCGCTATTCGAAGAAGAAATTAGCGAACTTGA ATTTGACAAACAAAATATTCTTACAGCCATTAATAGTCGACTCAGTGGCACAATAAATAAAGCTG AAATGTCGACGGTTGTTAAGGCGGAGGAGTTACCAACCCTGCCTAAAATACAGATTCCCACCTTC TTTGGTGATTCCAAAGAATGGGATCTTTTTAATGAACTCTTTACAGAGCTCATACATGTGAGAGA GGATCTCAGTCCTTCTCTCAAATTTAATTATCTAAAGTCAGCATT Found at i:20670024 original size:11 final size:11 Alignment explanation
Indices: 20670002--20670024 Score: 32 Period size: 11 Copynumber: 2.1 Consensus size: 11 20669992 TGAATTTCTC * 20670002 ATTAAAATCGT 1 ATTAAAAACGT * 20670013 ATTAAATACGT 1 ATTAAAAACGT 20670024 A 1 A 20670025 GGTAAGTAAG Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 11 10 1.00 ACGTcount: A:0.48, C:0.09, G:0.09, T:0.35 Consensus pattern (11 bp): ATTAAAAACGT Left flanking sequence: Indices 20669502 -- 20670001 GAGCTAACTTCGAGTACCAACGGCACCGAACAATAAAGTTTTTCTTCTTGTAATATTTTTCTTCA CGATGAGGCACAAAGGCCAAAAATAAAAGGTATTATAAAACTCAAAACAGCTTTAAACTAACAGT GTTCGTGCTGTTCAGGTTTCAACCAACTTTAACTCCGCCTAAAAGCATCCAACAAAAAACATTAG TTTTTTCGATGAACGACGCACAGATGCGCGGTGCATGGGAGAAAGTAATTAAACTTGGTCCGAAG AACCAATTTCCATTCAACCCATCGAGTGGCGTGACCCTCGTAATCTAGAATTGTCATCGCATGAC TCTGTTGAATACAGGCCGCCATACCACGCAACAAAAAAAGTGCGTAATGGAAATTAAACAAAGTC TTAAACTCAAGTGATATACAGCATTTAATTTAATTGACGGGTCGCGGACTGTGCTTTGGTATACC CGAAGGACTTGCTTGCATGAAGCTAAACCCAACACTGAATTTCTC Right flanking sequence: Indices 20670025 -- 20670524 GGTAAGTAAGAGTGGTTTATCCTACCAGTCGAAATTTTGTCAATTCATTGCAAATTATTTGCAAT GCTAGAAAAAGTACAGAGGAAAGATAAGAAAACTCGAAAAATAAATTGCAAACTCATTTGCTGGT GAATATCAAAAACTTTCTCATGCGGCTAAGAGAACTTTATTTAAAGTCGATACAAACGCAAAAAT ACCAAATCAGTCAGGCAACAGCATTGGAAGCCTTCTTCTCCCAACGCCCCAAAGTTTTATTTAAT GATTTTCGTAGACAATTTTGGCGTGCGTTTTCCCTCTTGAACCTAGACGAGCCTTGACAATATTG GGTTGGTTACGCTGGTGCTTTAGTCCTGCGAATTTTGTTTATTACTTTCTTTATCACTTAATTTA AATGTGCCCATGGAGACTTGAAGTTAACTTCGGTGTTTTTTCTACCCTATTTTTTTGTTTTTGCA GGACCTGAATCAAAAAACTTAGAATGGAGACATAATTACTAGTTT Found at i:20670408 original size:12 final size:12 Alignment explanation
Indices: 20670383--20670408 Score: 38 Period size: 12 Copynumber: 2.2 Consensus size: 12 20670373 TCCTGCGAAT * * 20670383 TTTGTTTATTAC 1 TTTCTTTATCAC 20670395 TTTCTTTATCAC 1 TTTCTTTATCAC 20670407 TT 1 TT 20670409 AATTTAAATG Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 12 12 1.00 ACGTcount: A:0.15, C:0.15, G:0.04, T:0.65 Consensus pattern (12 bp): TTTCTTTATCAC Left flanking sequence: Indices 20669883 -- 20670382 AACAAAGTCTTAAACTCAAGTGATATACAGCATTTAATTTAATTGACGGGTCGCGGACTGTGCTT TGGTATACCCGAAGGACTTGCTTGCATGAAGCTAAACCCAACACTGAATTTCTCATTAAAATCGT ATTAAATACGTAGGTAAGTAAGAGTGGTTTATCCTACCAGTCGAAATTTTGTCAATTCATTGCAA ATTATTTGCAATGCTAGAAAAAGTACAGAGGAAAGATAAGAAAACTCGAAAAATAAATTGCAAAC TCATTTGCTGGTGAATATCAAAAACTTTCTCATGCGGCTAAGAGAACTTTATTTAAAGTCGATAC AAACGCAAAAATACCAAATCAGTCAGGCAACAGCATTGGAAGCCTTCTTCTCCCAACGCCCCAAA GTTTTATTTAATGATTTTCGTAGACAATTTTGGCGTGCGTTTTCCCTCTTGAACCTAGACGAGCC TTGACAATATTGGGTTGGTTACGCTGGTGCTTTAGTCCTGCGAAT Right flanking sequence: Indices 20670409 -- 20670908 AATTTAAATGTGCCCATGGAGACTTGAAGTTAACTTCGGTGTTTTTTCTACCCTATTTTTTTGTT TTTGCAGGACCTGAATCAAAAAACTTAGAATGGAGACATAATTACTAGTTTGTACCTTTGCAGAA TTATTTTCTTTTTAAATTGATGGTTCATTTATATTCGAATATGAAATATAGTTAACAAAATATGC TCATTATCACCTAATTTAAATGTGTCCATGGAGACTTGAAGTTAACTTCGGTGTTTTTTCTACCC TATTTTTTTTTTTTGTTTTTGCAGGACCTGAATCAAAAAACTTAGAATGGAGACATAATAACTAG TTTGTACCTTTGCAGAATTATTTACTTTTTAAATTGATGGTTCATTTATATTCCAATATGAAATA TAGTTAACAAAATATGTTCATTAAGTTGACATGTGCATTAAATGTTCAACATTATTTTTCACTCA CTAAAATTTAAACACAACGAAAAACGCAAAACCCACCACAGGATG Found at i:20670414 original size:12 final size:12 Alignment explanation
Indices: 20670387--20670414 Score: 35 Period size: 12 Copynumber: 2.3 Consensus size: 12 20670377 GCGAATTTTG * ** 20670387 TTTATTACTTTC 1 TTTATCACTTAA 20670399 TTTATCACTTAA 1 TTTATCACTTAA 20670411 TTTA 1 TTTA 20670415 AATGTGCCCA Statistics Matches: 13, Mismatches: 3, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 12 13 1.00 ACGTcount: A:0.25, C:0.14, G:0.00, T:0.61 Consensus pattern (12 bp): TTTATCACTTAA Left flanking sequence: Indices 20669887 -- 20670386 AAGTCTTAAACTCAAGTGATATACAGCATTTAATTTAATTGACGGGTCGCGGACTGTGCTTTGGT ATACCCGAAGGACTTGCTTGCATGAAGCTAAACCCAACACTGAATTTCTCATTAAAATCGTATTA AATACGTAGGTAAGTAAGAGTGGTTTATCCTACCAGTCGAAATTTTGTCAATTCATTGCAAATTA TTTGCAATGCTAGAAAAAGTACAGAGGAAAGATAAGAAAACTCGAAAAATAAATTGCAAACTCAT TTGCTGGTGAATATCAAAAACTTTCTCATGCGGCTAAGAGAACTTTATTTAAAGTCGATACAAAC GCAAAAATACCAAATCAGTCAGGCAACAGCATTGGAAGCCTTCTTCTCCCAACGCCCCAAAGTTT TATTTAATGATTTTCGTAGACAATTTTGGCGTGCGTTTTCCCTCTTGAACCTAGACGAGCCTTGA CAATATTGGGTTGGTTACGCTGGTGCTTTAGTCCTGCGAATTTTG Right flanking sequence: Indices 20670415 -- 20670914 AATGTGCCCATGGAGACTTGAAGTTAACTTCGGTGTTTTTTCTACCCTATTTTTTTGTTTTTGCA GGACCTGAATCAAAAAACTTAGAATGGAGACATAATTACTAGTTTGTACCTTTGCAGAATTATTT TCTTTTTAAATTGATGGTTCATTTATATTCGAATATGAAATATAGTTAACAAAATATGCTCATTA TCACCTAATTTAAATGTGTCCATGGAGACTTGAAGTTAACTTCGGTGTTTTTTCTACCCTATTTT TTTTTTTTGTTTTTGCAGGACCTGAATCAAAAAACTTAGAATGGAGACATAATAACTAGTTTGTA CCTTTGCAGAATTATTTACTTTTTAAATTGATGGTTCATTTATATTCCAATATGAAATATAGTTA ACAAAATATGTTCATTAAGTTGACATGTGCATTAAATGTTCAACATTATTTTTCACTCACTAAAA TTTAAACACAACGAAAAACGCAAAACCCACCACAGGATGGCTTGT Found at i:20672550 original size:20 final size:20 Alignment explanation
Indices: 20672512--20672565 Score: 78 Period size: 20 Copynumber: 2.6 Consensus size: 20 20672502 TCCCATTTTT * ** 20672512 ATAAAATCATATAATCATATG 1 ATACAATCATAT-ATCATAGC 20672533 ATACAATCATATATCATAGC 1 ATACAATCATATATCATAGC 20672553 ATACAATCATATA 1 ATACAATCATATA 20672566 ATAAAATAAA Statistics Matches: 30, Mismatches: 3, Indels: 1 0.88 0.09 0.03 Matches are distributed among these distances: 20 19 0.63 21 11 0.37 ACGTcount: A:0.50, C:0.15, G:0.04, T:0.31 Consensus pattern (20 bp): ATACAATCATATATCATAGC Left flanking sequence: Indices 20672012 -- 20672511 CGTGATTGATTGCTGTGTACTGCATTTCAGCCATCTAATCCCTTCACCACTTGCAGATATGATTG CTTTTCTTCCATCTGTGATTTACCATTTTCTGACTTCATCGTCATCACATGGGACGTGACTGCGT TCAACTATTCGGAAATGTAAACCAGGATACGTATTGAATACGCATGAAAATTAGTTGGTCTCAGT TTTCACAGATTGGTAAGCGTAATCAACTTATTGGTTTGAATATTTGACACCGGAAATCTTTAATG CGTGTTTAAAGAAATCGAATTTAAAGATCGATTAAGATAACTTGGGATTGAAAACATTACAAAAT ATTAAAGCGAACGGACTAACACAACACGCTCTAAGGAGAATATCACAAGGCGCCCCAGTGGACTG ACCCTTTCTAGAAGATCAACAGGGGGTATGGTGCTCCTACTCAAGAAGGCAGGTAGACTGGATAC TATAAGCTTTTTCAACCCATATATAAGTTTAACCATCCCATTTTT Right flanking sequence: Indices 20672566 -- 20673065 ATAAAATAAATCATAAAAAAAAATAATAAAGGCAATAAAGAAATAATAAAGGAATAAGGAAAAAC TAACTTTTGTTCTCCGTGTAACACAAACATGATGCCACCAAAACAAGCGCAATACATAGCAAGCC TATAAATATCTACTTTTCTCCCACTTGCTGTAGTTCAATCAAAGTTAACGACAATAAATTGTGTA CACTCAGTCTTTTAATCTAAATTAAGCGCCAGTTTCTGTCCCTCATAAGTCTGTCGATAGCGGCT CGAGCGGCAATCTCCATCAACTGCATCATGTGTCATAAGCAAGTTGCAAACCACCGACAAAAGTT AAGGCCCGTCTAGCGATGTGCGCGTGACACTATGTATGTATTTGTAGTATGGAGATGTAACTTAT AGGTCTTCCAGCTTTGCAATCAGACTACGATATACGTATGTATTTCTCGGGCTTTTCAAGCTTCC AACGATTGGTAGAGGAACACTGCATCTCTAAAGGCGTTGAATCAC Found at i:20672589 original size:13 final size:13 Alignment explanation
Indices: 20672563--20672595 Score: 45 Period size: 13 Copynumber: 2.6 Consensus size: 13 20672553 ATACAATCAT * 20672563 ATAAT-AAAATAA 1 ATAATAAAAAAAA * 20672575 ATCATAAAAAAAA 1 ATAATAAAAAAAA 20672588 ATAATAAA 1 ATAATAAA 20672596 GGCAATAAAG Statistics Matches: 17, Mismatches: 3, Indels: 1 0.81 0.14 0.05 Matches are distributed among these distances: 12 4 0.24 13 13 0.76 ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21 Consensus pattern (13 bp): ATAATAAAAAAAA Left flanking sequence: Indices 20672063 -- 20672562 TGCAGATATGATTGCTTTTCTTCCATCTGTGATTTACCATTTTCTGACTTCATCGTCATCACATG GGACGTGACTGCGTTCAACTATTCGGAAATGTAAACCAGGATACGTATTGAATACGCATGAAAAT TAGTTGGTCTCAGTTTTCACAGATTGGTAAGCGTAATCAACTTATTGGTTTGAATATTTGACACC GGAAATCTTTAATGCGTGTTTAAAGAAATCGAATTTAAAGATCGATTAAGATAACTTGGGATTGA AAACATTACAAAATATTAAAGCGAACGGACTAACACAACACGCTCTAAGGAGAATATCACAAGGC GCCCCAGTGGACTGACCCTTTCTAGAAGATCAACAGGGGGTATGGTGCTCCTACTCAAGAAGGCA GGTAGACTGGATACTATAAGCTTTTTCAACCCATATATAAGTTTAACCATCCCATTTTTATAAAA TCATATAATCATATGATACAATCATATATCATAGCATACAATCAT Right flanking sequence: Indices 20672596 -- 20673095 GGCAATAAAGAAATAATAAAGGAATAAGGAAAAACTAACTTTTGTTCTCCGTGTAACACAAACAT GATGCCACCAAAACAAGCGCAATACATAGCAAGCCTATAAATATCTACTTTTCTCCCACTTGCTG TAGTTCAATCAAAGTTAACGACAATAAATTGTGTACACTCAGTCTTTTAATCTAAATTAAGCGCC AGTTTCTGTCCCTCATAAGTCTGTCGATAGCGGCTCGAGCGGCAATCTCCATCAACTGCATCATG TGTCATAAGCAAGTTGCAAACCACCGACAAAAGTTAAGGCCCGTCTAGCGATGTGCGCGTGACAC TATGTATGTATTTGTAGTATGGAGATGTAACTTATAGGTCTTCCAGCTTTGCAATCAGACTACGA TATACGTATGTATTTCTCGGGCTTTTCAAGCTTCCAACGATTGGTAGAGGAACACTGCATCTCTA AAGGCGTTGAATCACCGCGATGCAGATGTAGACTCAGTTTCTGTT Found at