TRAP (Tandem Repeats Analysis Program)

TRF Version 4.00

Sequence: arm_3L assembled 2004-3-14 md5checksum:58b150ba3706a94f84f5242c20c22999

Parameters: 2 5 7 80 10 25 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23771897
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29

Warning! 300 characters in sequence are not A, C, G, or T




Found at i: i:6226174 original size:12 final size:11

Alignment explanation


    Indices: 6226149--6226178  Score: 37
    Period size: 12  Copynumber: 2.6  Consensus size: 11

    6226139 ATGCTGAAAA

                   *   
    6226149 TATATTAGTAT
          1 TATATTAATAT

                        
    6226160 TATATTATATAT
          1 TATATTA-ATAT

               *   
    6226172 TATGTTA
          1 TATATTA

    6226179 CCATTTTATA


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  11    7  0.44
  12    9  0.56

ACGTcount: A:0.37, C:0.00, G:0.07, T:0.57


Consensus pattern (11 bp):   
TATATTAATAT

Left flanking sequence: Indices 6225649 -- 6226148
CCTTTCTGGCCCGGTTTATGATGTTGGTAGCCCAAACGAGAGGCATCCAGTATTTGGACATGGGA
CTCTTCTGATTCAGTGCCTCAAAGATTTTCATCTCCGATTCGTGCATCAGACCCGCATCCACGAG
ATGTTGGGTTGTGGGAAAACGACGTTTTACACGAAGGGAAATTCGCTGAAGGGTAATCACATAGG
CCAAGACCATATAGCGCATGATATTACGACGCATCAGGCGACCCGTTTCATTCTGTATTAAGAAT
TTTTATAGATTATTGTTGGGTTATTTGAAAAAAATTATTTTCTTACATTTACACCGCCATTTGAG
TTGGGAATAGCCGCGCTTATGAACAGGGCCAACGTATCTGGCCAGGGCAAAAGCCTATATTGCTC
CCACCAACGTTTCACCACCAGATTCACATAGAAGCCCAGCACAAAGGACATGGGTATACTTTCAC
TCTGCTGCCCAAAATAAAGGCGAATTTTTTTAAAAATGCTGAAAA


Right flanking sequence: Indices 6226179 -- 6226678
CCATTTTATAACCCTATTCATACTTACGCTTGCTGACTTTCTGTCAGACCAAATCTGTAGATAAC
ATTTATGGTATAGTATAAACACAGATACGCAACTAATTCGCGCCAAATCAATTTGTAAACGCTGC
CTCGCCATCTATTAAAAAAGGGAAGGGATTTGAATTAAGTAACTTATAGGTAGTCGAGGAATTTA
TGGCTTTAATCTGTAACTAACTGGTTTTTGTTTTCTTATACAAACGATTTCCTCATTCAGACTTT
CAATCATTTCCCCCATCGCATTTCAGATTAGGTTTTCGTTTCTAATGAGTCGCCAGTTCTGCAAG
ATTTTTTATGGGGGTATTCCAATCTTGCATGTCAGTTCCAATGAATTCAAATGTCTTAAAGTGTG
ATTTGATACATTATAAAAAATATATATATGTATATTGATTGGCATAACCGCTTCGAAACTGGTAC
TATTCAGGTGGGGTCTTTGTTCTGTTTGTTTTGATCAAGGTTTCG



Found at i:6234745 original size:14 final size:15

Alignment explanation


    Indices: 6234726--6234754  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

    6234716 GCTGAAGGCG

                           
    6234726 CTGGCC-ATGCCCAC
          1 CTGGCCGATGCCCAC

                           
    6234740 CTGGCCGATGCCCAC
          1 CTGGCCGATGCCCAC

    6234755 AATGGTGACC


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    6  0.43
  15    8  0.57

ACGTcount: A:0.14, C:0.48, G:0.24, T:0.14


Consensus pattern (15 bp):   
CTGGCCGATGCCCAC

Left flanking sequence: Indices 6234226 -- 6234725
CCCAGGCGCTGCGACATCAGGAAGCGGAAGCGGGACGAGTCCAAGTTGGTGCCGCTGCCGATCAC
GCGGTTCTTGGGCAGACCGGACAGCTTCCAGGCCACGTAGGTCATGATGTCCACGGGATTGGACA
CCATAAGCAAAATGGTATCGGGACTGTACTGTAAGTGAAATCAAGTTATTGCTCCAAATCTCTAT
ATTAGTTTCTTGATTGTCGACATGAACCTACCTCTACCAGCTTGGGGATGATGTTCTTGAGGATG
TCGGTGTTGCGCTGCACGAGGGACAGGCGGGACTCGCCCTCCTTTTGGCGCACTCCGGCGGTCAC
GATGCACAGACGGGAGTTGGCCGAGGCGGCAAAGTCGGTGCTGGCCGTGATCTGGGGGTTCTTCA
GAAAGTTGGAGCCGTGCTGCAGATCCATCAGCTCGCCCTGCAGCTTGTCCGCGCAGACATCGATG
AGGCACACCTCCTTGGAGACGTTCTGAGCCAGGATGCTGAAGGCG


Right flanking sequence: Indices 6234755 -- 6235254
AATGGTGACCTTGTGCCCGGAGCTGGGCAGGACCTCAGCAACCTGGGCCAACAGACTGTCCTTAA
TGGCGGCCATTGCTAGGGGGTAACAAAAAAAAAAAAAAAAGAAATATAACTTTAATATTCCGCCA
AAGAAAGCAAAGCGCATTGCCCCTGGGAGATTACCCATTTTGATTGCTATCACGTGCCTATGATT
TAGTTAAAACATTCACATTTTTTTTGGGAAAACTCTTTTCCCCACAAACAGACACACACATACTG
CTTAGTTGGCGTTCTTTAACCTTCACGAAGGTCGTATTAATGAGAAAAAAGCGACATCGCCACAA
CACGCAACCGGACCGAACCGAAAACATTGCCGAAAAAATTAACTTGTGATTTTTTTTGCTCTTTT
ATATAGCAATTCATAGAGCCACATGACACTGCCAGTCAATTAGGGTCTTCTTCATTCACACAGAT
AAAATCTAATTAGGCCCAAATGGAAGTTTTATCAATGAAAATGTG



Found at i:6239345 original size:12 final size:12

Alignment explanation


    Indices: 6239321--6239345  Score: 36
    Period size: 12  Copynumber: 2.1  Consensus size: 12

    6239311 GAAGGCAGTA

                    *   
    6239321 GCAGTTGAGGCT
          1 GCAGTTGAAGCT

                   *    
    6239333 GCAGTTGGAGCT
          1 GCAGTTGAAGCT

             
    6239345 G
          1 G

    6239346 GGGAGGATGC


Statistics
Matches: 11,  Mismatches: 2, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  12   11  1.00

ACGTcount: A:0.16, C:0.16, G:0.44, T:0.24


Consensus pattern (12 bp):   
GCAGTTGAAGCT

Left flanking sequence: Indices 6238821 -- 6239320
GTAAAATGTTTTGAGAATTAGAAATTGGTCGTTTATTGTGAGCACCTATATAACGCAGTGTTCCA
ATTCCAGCAATCTTTTAGCTTCCCATATTACGCAACATTTCGATGCATTCGCCAGATTAGCCAGA
ACAAACATTTCTCATGCTCCGCGCTCCCAATCTCTGAAGCTCTGCGTGCCGGCTGAAAAGTGAGA
GATGCCCCAAGAAACCGATAGTGCAACTCCTGGCCAAAAAACGACCCAAGGCGTTGTTATCAACG
CCGGGGAATCTGATTAGAGCCAGAGAGCTCGATGTGCCCGTGTGTGTAAGCCAAGTGGCAGGAGG
CGACTCCATCGTCTGCGAATTCTCGGGAGCACGCAATCGAGCGAAGATGTCGCTGCCCCACTGCA
CATTAATATTCAAAAATTGCGTTTTTATGCTAATTCTCACACACAACGTTGGAGCCGGACTAAAT
GGCCAACCTGTCGATAGATTACTCAATGACAAGAAGAAGGCAGTA


Right flanking sequence: Indices 6239346 -- 6239845
GGGAGGATGCACACTCTTCAGAAGAACCCACGGTGCACTGAGGTAAATACTTCATGCTAGATCAA
TATACAATTGGAAATGATTTCACATAATAATATGTTTGTTGTATATGTATATATCATATGTTTTT
TTTATAAAATGTACCACGTTAAATATTTTCTTTCTGTGTGGTCCAATTGGCTCGATTGGCCTCCA
GTTGTTGTTTTTGTTGCTGTACTGGCCGATGATGATCATCTTTCGGGTATATCGCACCTTGCCAT
CTTTTTGGCAGCCAACAGCCTTATTATTGCTTTTTTTTCACCAGCCAGGCAACCACGACTTTTCC
CGTCCCGAACCGAACAACCAATATTACTCATACGCACCGTTGTTTATTTATGGCTAGATGCTGCT
GGCTGGTGCCGCTGATGCTGTTGCCGTTGGGCGATGCTGTTGCCGGCGTAGTTTAGCAATAATTA
AGTTGTTAAATTGTTGCACGTAAGTCAAGTTGGCCGGGACGGATG



Found at i:6242712 original size:14 final size:14

Alignment explanation


    Indices: 6242689--6242717  Score: 44
    Period size: 14  Copynumber: 2.1  Consensus size: 14

    6242679 ACACACATCA

               *          
    6242689 AAAGTAAAAACGAG
          1 AAACTAAAAACGAG

                      *   
    6242703 AAACTAAAAAGGAG
          1 AAACTAAAAACGAG

             
    6242717 A
          1 A

    6242718 GCGCTGCCAG


Statistics
Matches: 13,  Mismatches: 2, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.66, C:0.07, G:0.21, T:0.07


Consensus pattern (14 bp):   
AAACTAAAAACGAG

Left flanking sequence: Indices 6242189 -- 6242688
TACCAAGTATTTAAACACGAAAACACGAGGCGTATACGTAATATTTATTGATATGATGCAGAAAT
GAGTCAAGTACTAATCCCCATATACCCTCACCCACCTCTGAGTACTGAGTATCGAAAAAAACGAA
AACAGTTTGCAGTTTCAATTTTGCAATGGCCAATTGAGCCGGAGTTGCTGAAAAACTTTGTTTGT
CGACTTCGATAACATTTCGACATTTGCTGGCTTTAATTGAATCGCCAGCAGAGCATATACTTCGG
ACTGCCAGCGAGCAGGTGAAATCGAAATCGAAAGTTACTGGCCTATCTCCACAGCCTCCATCGCA
TCCATCCAATGGATTCTCGACGGGAGCGGCTCGATTGAAAGTCGAGAAATCGTCGGATTGCATTT
CGACCAGCTGGTTATACTAATTAGATCGGAGCGACGCGACTCAAGGTCGCTGACAAAACTGAATG
CATAACAAATTTCATTTATAGCCGGCACGCAATCGACACACATCA


Right flanking sequence: Indices 6242718 -- 6243217
GCGCTGCCAGGGTGAAGTTACTGTGGCAGGCTTTTAACTCTGCCATAATTCAGGCCGATAAGCGA
TCTTAACTATCTACACGATCTGGACAGGCCGGACCGCTGTCGTGGCTCTCCGACTTGTTGCCAAT
TGCATTTGGGCTTCTTGTCGGGGTCGTTGCTGTGACAATATTTGCATGCCAGCTCGACTCGCACA
CTCTTGCTGGGAGCGGGATGCACTGGAAAGGTGGTATCAGCGCCATCATCTCATCATCGATATGC
CATCAATGTGGAATGGTCGCAAATTATCTGGCCTTAAGAGTGGCCTGGCATCGACACTGGCCAAA
GCCAATGCACTCCAAAAAAATAGGTGAAGTACTGAAGAGTTTGAACTGGTTGAGTAATATTCTGT
CATTCTTAAAAACCAATGCAGATTCTTTTGAATTTTGTCTACTTCTTTATTTACCTATTTACTCT
ACTTATTCTGTCACTACTAATATTGTAATTTTTACTTTAATTCAT



Found at i:6243399 original size:10 final size:11

Alignment explanation


    Indices: 6243379--6243402  Score: 41
    Period size: 10  Copynumber: 2.3  Consensus size: 11

    6243369 CAGATAAAAC

                       
    6243379 GTGGCTCTCAA
          1 GTGGCTCTCAA

                       
    6243390 GTGG-TCTCAA
          1 GTGGCTCTCAA

               
    6243400 GTG
          1 GTG

    6243403 CTGATTGGCT


Statistics
Matches: 13,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  10    9  0.69
  11    4  0.31

ACGTcount: A:0.17, C:0.21, G:0.33, T:0.29


Consensus pattern (11 bp):   
GTGGCTCTCAA

Left flanking sequence: Indices 6242879 -- 6243378
GTGACAATATTTGCATGCCAGCTCGACTCGCACACTCTTGCTGGGAGCGGGATGCACTGGAAAGG
TGGTATCAGCGCCATCATCTCATCATCGATATGCCATCAATGTGGAATGGTCGCAAATTATCTGG
CCTTAAGAGTGGCCTGGCATCGACACTGGCCAAAGCCAATGCACTCCAAAAAAATAGGTGAAGTA
CTGAAGAGTTTGAACTGGTTGAGTAATATTCTGTCATTCTTAAAAACCAATGCAGATTCTTTTGA
ATTTTGTCTACTTCTTTATTTACCTATTTACTCTACTTATTCTGTCACTACTAATATTGTAATTT
TTACTTTAATTCATGCAAATTGGTTACTTTTTCTCGCAGTGCGCCTTTGGGCTCTTCTTCAGCTG
CAGTCAACTTTCCGAAGGCGGCACTCTGTGGGATCTCTGGATCGGTTCGCTTAATGCCTTTGTGA
CATTTTAAGGTTCAATTTGGCTAATAATGGCGGCGCAGATAAAAC


Right flanking sequence: Indices 6243403 -- 6243902
CTGATTGGCTGCTATTTTTGCGTTGTCTATATGGCGTTCTAATGAACGGATACTTAATTGTAATG
CAATGCCAATATCTGGTGGCGTAATTAACGAAATTACAAGGTTTCGGCTTTCGCTCAATCAGTCA
CTTCTCTCAGTCCTTTTTGTTGCCATAACAATTTGTTTGCCGAATGTCCCAGAGGCAAAACAAAT
GTCTCCCCAATCCCAGTCATTTCCTTAACCGTTGTTGGCTTACCTTTTAGCTGGCTTTTGATTTT
GTTGGCCAACTGCTGGCCCAAATGTTATGCCAAATTGCAGCTACCGTTTGCGGGTCTCTGGAGCC
AGTTTTCTGGTATCCGGCTTTAATCTCTTACCAACTGCCGGCTACCAGTGTTGCCCGAAATCGCT
TTGGCAACGCTTTCTGGCGGAGAAGGGGGACGTTTTTGATCTCATCATCGTCATCGTTGGCGGAA
TCGAGGCTTTGCCCCTTCAGCTCAGCAACAACAACTCTTTCTGCT



Found at i:6245542 original size:12 final size:12

Alignment explanation


    Indices: 6245513--6245571  Score: 76
    Period size: 12  Copynumber: 5.0  Consensus size: 12

    6245503 ATGGGGACAG

                 *      
    6245513 CAGCAGCA-CAA
          1 CAGCAACATCAA

            *       *   
    6245524 GAGCAACACCAA
          1 CAGCAACATCAA

                    *   
    6245536 CAGCAACAGCAA
          1 CAGCAACATCAA

                       *
    6245548 CAGCAACATCAG
          1 CAGCAACATCAA

                        
    6245560 CAGCAACATCAA
          1 CAGCAACATCAA

    6245572 GCACTGCAAC


Statistics
Matches: 40,  Mismatches: 7, Indels: 1
        0.83            0.15        0.02

Matches are distributed among these distances:
  11    6  0.15
  12   34  0.85

ACGTcount: A:0.47, C:0.34, G:0.15, T:0.03


Consensus pattern (12 bp):   
CAGCAACATCAA

Left flanking sequence: Indices 6245013 -- 6245512
TATTTGTTTGCCTGACAACGGAATCATGTAGAACAGCAAAAAGTTGGCAACTCGAAAGGAGTTGG
GCCGATTTCAGTTCGGACTGAAAAAAATCGGAGCCAGTGCATGTCAACTTTAATAACTCAATTAG
AAATGTTGGGTAGTCGGTTAATTGGAGTTTTTTTTCCTGGAAGGAGATTTTGTGGCACAATTTGA
CTTGTCTATAGGATTCCAGACTATAGGATTTGCATTGTGAAGTACTAAACATCTGCCTATTAGTT
TTATATATAAATTTCCATTGATGTTTCCTTGTCCATTAGGAAACGACAAATGCAATAATTTGTCT
TGCTTAAGTCCCACAAACATTGCACTTGTCAACTGTAAGTTTTCCCCCAGCTTTCCATTCCCATT
TTCTCCCCTCTGCCAACTGTCTTCAGTTGATTGGCGTTTGAGGTGCGCGTGCGCGTGTCTTTGGG
GCGAAACAATTAATTTGAATAATTAGCAGCTAACGATGGGGACAG


Right flanking sequence: Indices 6245572 -- 6246071
GCACTGCAACTGCAACTGCGCTGCCTGCTTTCGACTTGTCGATTGTGTCACGCCAACAGGAGTTA
AGGCCAAGTCAAAGGCAAGGCGCTCTCGCCGGCAAATGGCGATATAAAAAATGCATTTGGCACTT
GAGAATTTATGTGCCTGCTGCTGCTGTTGCTGCTGCTGCTGCTGCTGATGGAGAATCAGGGACTC
TGACGATGGGGACGAGGACGTGGACTCCGGAGTACGTCACGCGAAATGATGAATTACTCGCCGGG
GACGCGCGTCAGTCTTTGATGAGGAACGACAGCGTGAAATTAGACAAAAGGGTTATGGCAACATG
GCCAAAATGGAGGGCATCGGTGTGGAGAGGAATGAATGGCGGTGGTGTTGTGTGCCATATACCCG
TACCATATGCCATATGTGCTGTCTGGTTGACTTTGCACTCGAGGACGACGCGCCTTGACTTAATG
AAGATGACGAGTGCTGCAGAGACTGGGCGTGTTTTAATCCTTCCT



Found at i:6248082 original size:18 final size:18

Alignment explanation


    Indices: 6248059--6248098  Score: 66
    Period size: 18  Copynumber: 2.2  Consensus size: 18

    6248049 TGCAACAGGC

                          *   
    6248059 ACTGCAACAACTGCTGCA
          1 ACTGCAACAACTGCAGCA

                              
    6248077 ACTGCAACAACTGCAGCA
          1 ACTGCAACAACTGCAGCA

            *   
    6248095 GCTG
          1 ACTG

    6248099 ACCAGGCTCG


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.33, C:0.33, G:0.20, T:0.15


Consensus pattern (18 bp):   
ACTGCAACAACTGCAGCA

Left flanking sequence: Indices 6247559 -- 6248058
TGTCGGCGAGTTCAGAAATTTATCAAGTGACCAAGACAACTGGGAATAAAAGCTCCAAAAAGCTG
ATTAAAGAAGTGAAAATACTCTTTAGTATGCATATAATCATATATCCTAATGATCATAATTTTAT
AAGAGCAACACCATAATCAAGAGTTTTTAGCTCATAAATTGTACTTTATATAAATGTGCTTTTAA
GTACCCTTATTTATGGTAGAGTATGCTCGACCCCTTCCATTTCGCCGTCGGCCAATTAAAAACTC
CAAAAATCGCAAAAAAAGAATTATTAACTTAATTTTACTAGCCGCAAATATTTCGCGGCACATTA
CGAAAGGCGACGCGACGTTGTTGTTGTTTTGCTTCTGCACATCGATTTGCCGGCAACTCCGGCGG
TGCGGCCAAAAATTATTAACTAAAAGAGCCAGAAATTGCAAAAAGATTGCCTGGAAATTGACATT
TGCTCGTTAATGTGTGCCTGCTGTTGCGGGTTAGCTGCAACAGGC


Right flanking sequence: Indices 6248099 -- 6248598
ACCAGGCTCGTTTGTCGGCATCGCATGCAACTGCCAATAATTTAGAGCTTTTAATAAAAATGTTG
CTGCTGCAACACGGACACCGTTTCGGCTGCGATTCGGCGACTGTTCAAGATTTATATCATAATTT
ATTTATTAATTTCATTAAGTAAATTTCATGTGATGAATGACGCTGTCGTTCGGTCGCCTTCCTGC
GGCGATTGCCAAAATTTGTATTGTTGTTATCCCAGTCACTAAAGAGGAACCATAAATAACAAGCG
AATGGATTTTAGTGTGGGAGTAAAATTTGAAACGAAATAAAAATATAATTTGTGCAACATTTTCA
CCGGCCTAAGAAAACATCAGAGAGTCGTTTTAAGTTTTGCATTCATTTTAATTGCACCGTCGTCA
GGTATAAAAGTAAGGTCATCAAATATTTATTCCAACATGTTTTTCAATCGGATGGTAATTTATTG
CATGTTGCACAACTAAAAGCAGAAATTCTACTTAATGTTCGGTCT



Found at i:6249012 original size:13 final size:13

Alignment explanation


    Indices: 6248994--6249025  Score: 43
    Period size: 13  Copynumber: 2.5  Consensus size: 13

    6248984 GTTTAGCCAA

                  *      
    6248994 AAAAAAGAAAAAC
          1 AAAAAAAAAAAAC

                     *   
    6249007 AAAAAAAAACAAC
          1 AAAAAAAAAAAAC

             *    
    6249020 AGAAAA
          1 AAAAAA

    6249026 CCAACAAAAA


Statistics
Matches: 16,  Mismatches: 3, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.84, C:0.09, G:0.06, T:0.00


Consensus pattern (13 bp):   
AAAAAAAAAAAAC

Left flanking sequence: Indices 6248494 -- 6248993
AAAAGTAAGGTCATCAAATATTTATTCCAACATGTTTTTCAATCGGATGGTAATTTATTGCATGT
TGCACAACTAAAAGCAGAAATTCTACTTAATGTTCGGTCTCTTGAATAATAGCACGCCATTTGGG
CAAACATCAAAAAATGATTAAAAAACCATTTAAAATTATATTCAATAATAAAACATCGAATAAAT
TTAGTCAAACGAAGCGAATTGTTTAACGTTTGCGCCACAGATGCGGCAAAGCAAAAAACCACGAG
CTACAATGAAGAAAAATCAAAAGCCCATAAAACTGACGACTAAAATCAATTGCGACTCTAAACTT
TAATGCCCCAACTGGTGGGGACTTGGCCAGAAGGTAGGTGGTATTGCTGCCTGTCTGCGAGCACT
GGAAAAGCTACCAAAATTGAAGGTTTCCAGTCTGTTTGTAGCTAGCTGGCCAAACGAAATCGCAA
CGGCCTCTTGCCAAATTCAATGGATTTTACTTTTCGTTTAGCCAA


Right flanking sequence: Indices 6249026 -- 6249525
CCAACAAAAACCACACGGAATCATAGCAAAGAGCTGAAAAATCGCTGAAAAAAAAAAATCATAGA
CCGCTGCTGTCGTGACCAATTAGTGATCAAGTCGAGCGGTCGCAGGGGCGGTGCGACGGCGGGGG
GCGTGGTCGCGCAGGCGCACGTCAGCTATAGCTTAGGCTATAGTATCGTATAGTGTAGTATAGTA
TAGATATAGCTCGAATATCGCAGCAGGGACAGGAATAAAGACAGCAAACCAAAGCTGCAATCGAG
ACCGAGTCTACACAACCCAGAGCTCTCAGTCTGAGTCGCACTTTACATTCAAATATTTTGTGACA
CAAAACGCTTTTTGTGGCTGCACCAGCAAACGTATTTGCTTTTGCTTATTGCTGGGGGTCTCTGT
GGGTCCCAGAGCATATTTGCTTTGGCTTTTGTCTGTGGCAAATCTTTACCAATTTTTCTACTTGG
GCGTGTTCGAGTGCCATGCGTTTCGAGTCTGTACTCTACCAAATA



Found at i:6250256 original size:18 final size:18

Alignment explanation


    Indices: 6250236--6250300  Score: 88
    Period size: 18  Copynumber: 3.6  Consensus size: 18

    6250226 TCAGAAACAG

                    *  * *   *
    6250236 CAGCAGCAGCATCTGCAG
          1 CAGCAGCAACACCAGCAA

                              
    6250254 CAGCAGCAACACCAGCAA
          1 CAGCAGCAACACCAGCAA

              *            *  
    6250272 CAACAGCAACACCAGAAA
          1 CAGCAGCAACACCAGCAA

                       
    6250290 CAGCAGCAACA
          1 CAGCAGCAACA

    6250301 TAATGCAACA


Statistics
Matches: 40,  Mismatches: 7, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  18   40  1.00

ACGTcount: A:0.43, C:0.35, G:0.18, T:0.03


Consensus pattern (18 bp):   
CAGCAGCAACACCAGCAA

Left flanking sequence: Indices 6249736 -- 6250235
CCATTATTTCCGAATAATATCAATAAAAATTTGTAGAAATGAGCGGGTCGAATCCGTCCAATTCC
AGGAGGGCCAATTATCGCAATACCTTGGATCCGGATATGGTTAGCAGAATCGAGCAACTCGAGCA
GTTACTGGAGACCGAAAAACGGAAGTATCATCAATTGTCCATGGATCGACTTTTAAATTACAAAT
TGGATCGGGATAACCTGCCGGAGGATACTCCGTTGCCAATATACCTGGCCCATCGGGAGCCCAGA
AGTTTGAGTCCACCAAGCCGGTGGGACGCCTAAAAGGTAGGTCTTTAATTTGTAAAAAAAAATAT
ATCCTAATCTATCAATTCGTATCAAAAGTAAGCAAATTTACTCTTCTTTTTTTGTGAATACCTGG
AAAAGAGCATACTTAGTGCGATGTCTGAACGAGTTAGTTATGTTCTTCTTAATTTAGTGTCTGCT
TTTCAATTTCAGAGTCTCGCATATTAGTCAGCCAGTCAGAAACAG


Right flanking sequence: Indices 6250301 -- 6250800
TAATGCAACATAAAGCGCAGCTCCCATGACTCATTTCGCTTGATGCGCGCGACATTAAGAGACAA
GGCTGAAGCATAGAAAAACGAGAGAAATACGGAAAAACACCACGGATACGAAGCCGAAACACTCA
CTTGACTTGAAAATCTGCAGAAGAATAACTGACAGTGTACACAAGCAGCACTAATTGCTGTAAAA
TTGCCAACAGTCCGCAGAGGAGCGGGAGTGGGAGCGAAATCGGGGACTTTGGGCCGACATAGAAC
AACAGGAGAATACAAAAATCACGGCGGCAAAACAACTGGCCGTGTGTTTAAAAAAAAATCTTAAC
GGAATGAATGCAACAGAGGAACGAATGTGCAACGAAACAAGCAACAGCAGCAGCAACATGAAGCC
GCAACAGCAACACAAGCTGCAAACAACTCAATTAACACAAACAACCAGACAGAGAATCGGGCAAA
AGTTGCTGTTGCCTTTGGGCATTGCCCAGCCGACCACGCCCCCCT



Found at i:6250696 original size:13 final size:12

Alignment explanation


    Indices: 6250665--6250697  Score: 43
    Period size: 13  Copynumber: 2.7  Consensus size: 12

    6250655 CAACGAAACA

                    *   
    6250665 AGCAACAGCAGC
          1 AGCAACAGAAGC

                         
    6250677 AGCAACATGAAGC
          1 AGCAACA-GAAGC

            *       
    6250690 CGCAACAG
          1 AGCAACAG

    6250698 CAACACAAGC


Statistics
Matches: 18,  Mismatches: 2, Indels: 2
        0.82            0.09        0.09

Matches are distributed among these distances:
  12    8  0.44
  13   10  0.56

ACGTcount: A:0.42, C:0.30, G:0.24, T:0.03


Consensus pattern (12 bp):   
AGCAACAGAAGC

Left flanking sequence: Indices 6250165 -- 6250664
ATGTTCTTCTTAATTTAGTGTCTGCTTTTCAATTTCAGAGTCTCGCATATTAGTCAGCCAGTCAG
AAACAGCAGCAGCAGCATCTGCAGCAGCAGCAACACCAGCAACAACAGCAACACCAGAAACAGCA
GCAACATAATGCAACATAAAGCGCAGCTCCCATGACTCATTTCGCTTGATGCGCGCGACATTAAG
AGACAAGGCTGAAGCATAGAAAAACGAGAGAAATACGGAAAAACACCACGGATACGAAGCCGAAA
CACTCACTTGACTTGAAAATCTGCAGAAGAATAACTGACAGTGTACACAAGCAGCACTAATTGCT
GTAAAATTGCCAACAGTCCGCAGAGGAGCGGGAGTGGGAGCGAAATCGGGGACTTTGGGCCGACA
TAGAACAACAGGAGAATACAAAAATCACGGCGGCAAAACAACTGGCCGTGTGTTTAAAAAAAAAT
CTTAACGGAATGAATGCAACAGAGGAACGAATGTGCAACGAAACA


Right flanking sequence: Indices 6250698 -- 6251197
CAACACAAGCTGCAAACAACTCAATTAACACAAACAACCAGACAGAGAATCGGGCAAAAGTTGCT
GTTGCCTTTGGGCATTGCCCAGCCGACCACGCCCCCCTAGCCAGCATGACCACCCTTTCCCCCTC
GGCCAAAAGCCCTTTTGAGCCTCATTTTTTTGACACATTTTTCGGGTCCCTCGACAATTGAAAGC
GTTTCCGTAATATTTGCTAGTAATATCTAGATAAAATATTGTAAGAAATGTAATATTTTTTGATA
TAATAATAAATTTAGATATTCATTTAAATTATTACGATTTTTTTACTAAACGCGAGCTGTGGTAA
AATTCCGTCTTCTTAACTCCTTTACTTTCGCTCTTCTATAGATATTCTTATTAACTTTCCATAAT
AAATGCATAAAAGAAACCGTCTCTGCAAGAATTTGAATACCATTGGCATTTATGATTTATGAGCT
GAAATGCTTTCATAGATTAGCAAACTGTCTAATTTGTTGCGTCCA



Found at i:6250715 original size:19 final size:19

Alignment explanation


    Indices: 6250672--6250712  Score: 54
    Period size: 19  Copynumber: 2.2  Consensus size: 19

    6250662 ACAAGCAACA

               *         *     
    6250672 GCAGCAGCAACATGAAGCC
          1 GCAACAGCAACATCAAGCC

                              *
    6250691 GCAACAGCAACA-CAAGCT
          1 GCAACAGCAACATCAAGCC

                
    6250709 GCAA
          1 GCAA

    6250713 ACAACTCAAT


Statistics
Matches: 19,  Mismatches: 3, Indels: 1
        0.83            0.13        0.04

Matches are distributed among these distances:
  18    8  0.42
  19   11  0.58

ACGTcount: A:0.41, C:0.32, G:0.22, T:0.05


Consensus pattern (19 bp):   
GCAACAGCAACATCAAGCC

Left flanking sequence: Indices 6250172 -- 6250671
TCTTAATTTAGTGTCTGCTTTTCAATTTCAGAGTCTCGCATATTAGTCAGCCAGTCAGAAACAGC
AGCAGCAGCATCTGCAGCAGCAGCAACACCAGCAACAACAGCAACACCAGAAACAGCAGCAACAT
AATGCAACATAAAGCGCAGCTCCCATGACTCATTTCGCTTGATGCGCGCGACATTAAGAGACAAG
GCTGAAGCATAGAAAAACGAGAGAAATACGGAAAAACACCACGGATACGAAGCCGAAACACTCAC
TTGACTTGAAAATCTGCAGAAGAATAACTGACAGTGTACACAAGCAGCACTAATTGCTGTAAAAT
TGCCAACAGTCCGCAGAGGAGCGGGAGTGGGAGCGAAATCGGGGACTTTGGGCCGACATAGAACA
ACAGGAGAATACAAAAATCACGGCGGCAAAACAACTGGCCGTGTGTTTAAAAAAAAATCTTAACG
GAATGAATGCAACAGAGGAACGAATGTGCAACGAAACAAGCAACA


Right flanking sequence: Indices 6250713 -- 6251212
ACAACTCAATTAACACAAACAACCAGACAGAGAATCGGGCAAAAGTTGCTGTTGCCTTTGGGCAT
TGCCCAGCCGACCACGCCCCCCTAGCCAGCATGACCACCCTTTCCCCCTCGGCCAAAAGCCCTTT
TGAGCCTCATTTTTTTGACACATTTTTCGGGTCCCTCGACAATTGAAAGCGTTTCCGTAATATTT
GCTAGTAATATCTAGATAAAATATTGTAAGAAATGTAATATTTTTTGATATAATAATAAATTTAG
ATATTCATTTAAATTATTACGATTTTTTTACTAAACGCGAGCTGTGGTAAAATTCCGTCTTCTTA
ACTCCTTTACTTTCGCTCTTCTATAGATATTCTTATTAACTTTCCATAATAAATGCATAAAAGAA
ACCGTCTCTGCAAGAATTTGAATACCATTGGCATTTATGATTTATGAGCTGAAATGCTTTCATAG
ATTAGCAAACTGTCTAATTTGTTGCGTCCACATCGACAGCTACAT



Found at i:6251976 original size:11 final size:11

Alignment explanation


    Indices: 6251951--6251977  Score: 33
    Period size: 11  Copynumber: 2.5  Consensus size: 11

    6251941 ATTTCGTTGG

                     **
    6251951 CATTTGAAAGC
          1 CATTTGAAAAA

                    *  
    6251962 CATTTGAATAA
          1 CATTTGAAAAA

                 
    6251973 CATTT
          1 CATTT

    6251978 CACCCGGGCC


Statistics
Matches: 13,  Mismatches: 3, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  11   13  1.00

ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37


Consensus pattern (11 bp):   
CATTTGAAAAA

Left flanking sequence: Indices 6251451 -- 6251950
GGCGGCAATGACTTGGCCAAAAGCCATTGGCAGTTGGTGCTAAGCCGCCACAGAAATGCAGATGC
GGCTGGAGGCATCCTCATGCATTTATGCAGACGTAGCTGCCGCCAGCTTGTCGTCGATTTACCTT
GCCACCTCTGCATCCCCCTCCTGCAATGCTCCACCCCACCCTCCCAGCATCAGACCCCCCCCCCC
CCCCTTGATTATCCCTCTCTTAGCCAACTGCTTAGCAATGCGCATATATTTGCCAAGTGTTCGAA
TGGCTTTGATCGACGTGGCTGCCTCGACTCGAAGGTGTCGGCTAGCGGGGATTTCTCGGTCAGCC
GAAAAAGAATAAGAAATGCCATCAGCCAGCAGCAGGTGTTGGTTTCCGTCTCTCGATTGCATACA
AAAAAAAAAAAAAGAAGTTAAGAGAAAAAAAACCAAATCCCAGCCCCAAAAGCCATCGCCAAATT
GATTTGTCAATCGCAGAAACCGCAAGCCTGCGCACATTTCGTTGG


Right flanking sequence: Indices 6251978 -- 6252477
CACCCGGGCCGACAACTTAAGTTAGCATTCGATATTTTTTTATCTTTTCTTTTTCTTTTGGTTTT
TGGGAAAGTATCGCATTTAAGCAGATGCAAAAACTGCTGGTTGCACTGGCCTACATGCCATAGCC
ATCGAAATAATTACAGCAGAGTGTTCACCCTGATTGCGTTGCCTTTGTTTGTTTGACCGAAATTG
CTTGGCATACACAACCCCATAAAATGAAGTTCAATGAGGTGTTGACTATCTACTCAAAAATTAAG
GGTTAAGTGGATAGATAACATACAGAGCATGTGCTAGTTAAAGAGTTTCATTTAATTGGCAGCAA
TAGAGGCTTATCAGGATGATATATGTAGGTAGAGTTTTAACGGGCATGCCTTGATCAAATATTCC
TTAGAAGAAGCTTTAGTGAATTTTCAAGATAGAAGACAAAGTATTCAAAGTAAAACCCATCCAGA
GATAAGCAATATCGATCTGTTAATAACCAGTTGAAAATGATCTCT



Found at i:6252036 original size:11 final size:11

Alignment explanation


    Indices: 6252012--6252036  Score: 36
    Period size: 11  Copynumber: 2.3  Consensus size: 11

    6252002 GCATTCGATA

               *       
    6252012 TTTTTTTATCT
          1 TTTCTTTATCT

                   *   
    6252023 TTTCTTTTTCT
          1 TTTCTTTATCT

               
    6252034 TTT
          1 TTT

    6252037 GGTTTTTGGG


Statistics
Matches: 12,  Mismatches: 2, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  11   12  1.00

ACGTcount: A:0.04, C:0.12, G:0.00, T:0.84


Consensus pattern (11 bp):   
TTTCTTTATCT

Left flanking sequence: Indices 6251512 -- 6252011
ATGCGGCTGGAGGCATCCTCATGCATTTATGCAGACGTAGCTGCCGCCAGCTTGTCGTCGATTTA
CCTTGCCACCTCTGCATCCCCCTCCTGCAATGCTCCACCCCACCCTCCCAGCATCAGACCCCCCC
CCCCCCCCTTGATTATCCCTCTCTTAGCCAACTGCTTAGCAATGCGCATATATTTGCCAAGTGTT
CGAATGGCTTTGATCGACGTGGCTGCCTCGACTCGAAGGTGTCGGCTAGCGGGGATTTCTCGGTC
AGCCGAAAAAGAATAAGAAATGCCATCAGCCAGCAGCAGGTGTTGGTTTCCGTCTCTCGATTGCA
TACAAAAAAAAAAAAAAGAAGTTAAGAGAAAAAAAACCAAATCCCAGCCCCAAAAGCCATCGCCA
AATTGATTTGTCAATCGCAGAAACCGCAAGCCTGCGCACATTTCGTTGGCATTTGAAAGCCATTT
GAATAACATTTCACCCGGGCCGACAACTTAAGTTAGCATTCGATA


Right flanking sequence: Indices 6252037 -- 6252536
GGTTTTTGGGAAAGTATCGCATTTAAGCAGATGCAAAAACTGCTGGTTGCACTGGCCTACATGCC
ATAGCCATCGAAATAATTACAGCAGAGTGTTCACCCTGATTGCGTTGCCTTTGTTTGTTTGACCG
AAATTGCTTGGCATACACAACCCCATAAAATGAAGTTCAATGAGGTGTTGACTATCTACTCAAAA
ATTAAGGGTTAAGTGGATAGATAACATACAGAGCATGTGCTAGTTAAAGAGTTTCATTTAATTGG
CAGCAATAGAGGCTTATCAGGATGATATATGTAGGTAGAGTTTTAACGGGCATGCCTTGATCAAA
TATTCCTTAGAAGAAGCTTTAGTGAATTTTCAAGATAGAAGACAAAGTATTCAAAGTAAAACCCA
TCCAGAGATAAGCAATATCGATCTGTTAATAACCAGTTGAAAATGATCTCTCCGTTTTTCCCGGG
CAGTGTTAATGCAGCTGCAAGATGTCCGCACCGTTGTCATCGTGC



Found at i:6252042 original size:11 final size:11

Alignment explanation


    Indices: 6252020--6252042  Score: 32
    Period size: 11  Copynumber: 2.1  Consensus size: 11

    6252010 TATTTTTTTA

                   *   
    6252020 TCTTTTCTTTT
          1 TCTTTTCGTTT

                  *    
    6252031 TCTTTTGGTTT
          1 TCTTTTCGTTT

             
    6252042 T
          1 T

    6252043 TGGGAAAGTA


Statistics
Matches: 10,  Mismatches: 2, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  11   10  1.00

ACGTcount: A:0.00, C:0.13, G:0.09, T:0.78


Consensus pattern (11 bp):   
TCTTTTCGTTT

Left flanking sequence: Indices 6251520 -- 6252019
GGAGGCATCCTCATGCATTTATGCAGACGTAGCTGCCGCCAGCTTGTCGTCGATTTACCTTGCCA
CCTCTGCATCCCCCTCCTGCAATGCTCCACCCCACCCTCCCAGCATCAGACCCCCCCCCCCCCCC
TTGATTATCCCTCTCTTAGCCAACTGCTTAGCAATGCGCATATATTTGCCAAGTGTTCGAATGGC
TTTGATCGACGTGGCTGCCTCGACTCGAAGGTGTCGGCTAGCGGGGATTTCTCGGTCAGCCGAAA
AAGAATAAGAAATGCCATCAGCCAGCAGCAGGTGTTGGTTTCCGTCTCTCGATTGCATACAAAAA
AAAAAAAAAGAAGTTAAGAGAAAAAAAACCAAATCCCAGCCCCAAAAGCCATCGCCAAATTGATT
TGTCAATCGCAGAAACCGCAAGCCTGCGCACATTTCGTTGGCATTTGAAAGCCATTTGAATAACA
TTTCACCCGGGCCGACAACTTAAGTTAGCATTCGATATTTTTTTA


Right flanking sequence: Indices 6252043 -- 6252542
TGGGAAAGTATCGCATTTAAGCAGATGCAAAAACTGCTGGTTGCACTGGCCTACATGCCATAGCC
ATCGAAATAATTACAGCAGAGTGTTCACCCTGATTGCGTTGCCTTTGTTTGTTTGACCGAAATTG
CTTGGCATACACAACCCCATAAAATGAAGTTCAATGAGGTGTTGACTATCTACTCAAAAATTAAG
GGTTAAGTGGATAGATAACATACAGAGCATGTGCTAGTTAAAGAGTTTCATTTAATTGGCAGCAA
TAGAGGCTTATCAGGATGATATATGTAGGTAGAGTTTTAACGGGCATGCCTTGATCAAATATTCC
TTAGAAGAAGCTTTAGTGAATTTTCAAGATAGAAGACAAAGTATTCAAAGTAAAACCCATCCAGA
GATAAGCAATATCGATCTGTTAATAACCAGTTGAAAATGATCTCTCCGTTTTTCCCGGGCAGTGT
TAATGCAGCTGCAAGATGTCCGCACCGTTGTCATCGTGCTTGTGG



Found at i:6257204 original size:11 final size:11

Alignment explanation


    Indices: 6257181--6257204  Score: 34
    Period size: 11  Copynumber: 2.2  Consensus size: 11

    6257171 GGCCTGGTGG

               *       
    6257181 GCAGCACAACA
          1 GCACCACAACA

                    *  
    6257192 GCACCACAGCA
          1 GCACCACAACA

              
    6257203 GC
          1 GC

    6257205 CCAGCTCTCT


Statistics
Matches: 11,  Mismatches: 2, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  11   11  1.00

ACGTcount: A:0.38, C:0.42, G:0.21, T:0.00


Consensus pattern (11 bp):   
GCACCACAACA

Left flanking sequence: Indices 6256681 -- 6257180
CATAAACCAGAAATTTCAATTCAAATGCACGAGGGGCAAGGAGGCGGCGCTGGGGAAAACGAAAG
ATTTTTAAATAAATTACAAGCGCATTTTGTTGCCCCACGTTGTAGGCTAATTGTATGCAGAGGCA
GCAGCGAAAAAGTATCTGAGAAATAGGAAAAAACCCACCTGTGGGATGTGAGTGTGATTTGGGTT
GGGTTCCTCATGGCCGAGCGAGCAGCAAACATACATATGTAGGAGAAGTAGAAGTCCGGATTGGG
TAAGCGACAGTTGCAATTTGCAATGCGCTTGTAAGATGCTTTCGCCAATCTTTTAATAAGAATCA
AACACTAGACGAGAGAATTCAAAACCATTTCGTATATGAGCAGTCCCCAAACTTATCGCTGATCG
CCCCGGTAGGTAGGTAGGTAGGTAGGTAGGCAGTTTGGCAGACAGTTCGGGCCGGGCCAGTAACC
AGGCAGCAGTAGATGGAGATTCCAGCTCGCATCTTGGCCTGGTGG


Right flanking sequence: Indices 6257205 -- 6257704
CCAGCTCTCTGCTCATTACACTTGGCCTGGTCAGAATGGTCCGGTCTGCCAATCATGCGTTTGGG
CCGAACTGCAATCCAGTCCATGCTCTAGTACCAACACACTCACAAAAACGATACAATAATTAGAA
TAAAATTTGCGGTACTAGGCAAGGTTAAAATATATCCAAAGTTTTATGTTTGGCTTTAAAAATAT
ATAATTCAAAATAAAATGTTTTATTGCATTAAAAAAATTGAACGGGCATTCGAGTTACCGAATGT
ACCAAATACAATCATGTTAGGGATATTGCCCAAAAACATATTCAAATTTTTCCAAGTGAATCATT
TTGAATCTCCATCGCCTGTTCCTGGCCAAAACAGAAGTTCTTGTCGCTTGTTCCTGTTACCTGGT
TGTTCGGCGCGGCCATTGAATATTTCAAATCGCAATCAGTTGGCAGGCATCTCACTCCCCGGCTA
CCGATTCTTGATTCCCTGGACGGGCTATCCATTCCGAGAGCTTTG



Found at i:6260670 original size:11 final size:11

Alignment explanation


    Indices: 6260654--6260675  Score: 44
    Period size: 11  Copynumber: 2.0  Consensus size: 11

    6260644 TGGAGGAAGT

                       
    6260654 GCAGCAGCAGC
          1 GCAGCAGCAGC

                       
    6260665 GCAGCAGCAGC
          1 GCAGCAGCAGC

    6260676 AGCGGCAACA


Statistics
Matches: 11,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   11  1.00

ACGTcount: A:0.27, C:0.36, G:0.36, T:0.00


Consensus pattern (11 bp):   
GCAGCAGCAGC

Left flanking sequence: Indices 6260154 -- 6260653
TTAGCAATTGTTGCCGTTGTTAGCCAAGTTGCTGCTGCTGCTGCTGCTGCTGGAGCTGCTGATGT
TGCTGCTGCTGGCGGGGCGTGCAAATTGCTAACAATTTTGATATTTAAATTATTGAGCCTGTTGC
CTGCACCGCCGCAACAGCACCAGCAACATGACAGCTCAATAAACATTCCATCAAGAATGGAGTGT
AAAAATCCAATTTTCATAAGTGGCCACGGCAACTTAAGGCATTTCAGGCTACTGTCCTTAGCCTC
GTCCTTGCATAAATTAGCAGCTGCAGCTGCAATCGCGCAGTCGCTGCCAGCGAAAGCCTAATTAT
GAAATGTATTTTTTATAAGTGAACCTAATTTGTCAATTATGCCGACCATATAGCAGGCAGTCTAT
AAGTTCATAGGGCTATATATACCCCATTGAATCATCTAACTTTCTAACAACGAAAACATTCACCT
ACTTTTCCACACCATTTCATAATCATAATCCCAGTTGGAGGAAGT


Right flanking sequence: Indices 6260676 -- 6261175
AGCGGCAACATCAGCAAATGCGGTTGGCAATTAAAGACCTCAAAACGACGATGGACTGGCTGAAA
AGGATTGGTAGCGACACTCGAATGCTGGTTTTTGTGGTTATTACCTCTTTTCTGGCCACTTTCAG
TCTCGAAGATGGCTGGCTTTACCATGGAGCCCTTCACTCCGCGGCTGTTTATTTTTTCCTACTGA
TTAATCACTTTGGCGCGTATAATAAATTAAAAATTTCAGCAATTTTGAAAGTCAATTAATCATCG
GGGAAGGCACTCGGTTTGTTGTTGTTGCTGCTGTTGCTGTTGCCGCTGCCGTTTTCTGATGTTGC
TACCTTTTTCATTTCTGCTGCCTTTGAGCCAGGCATAGACAACAGGAACAACAGCAACATCAGCC
ACCGGGCGACTCAAAAATGTCAGCCCATGACTACGCGCTGCACATTTAAGATGATGATGATGAAG
TAGCCGGCAGATCAGCTTGGAGTTTGGATCTTCATGGCCACGGAG



Found at i:6260673 original size:14 final size:15

Alignment explanation


    Indices: 6260654--6260691  Score: 55
    Period size: 14  Copynumber: 2.6  Consensus size: 15

    6260644 TGGAGGAAGT

                           
    6260654 GCAGCAGCAGC-GCA
          1 GCAGCAGCAGCGGCA

                           
    6260668 GCAGCAGCAGCGGCA
          1 GCAGCAGCAGCGGCA

            *  *     
    6260683 ACATCAGCA
          1 GCAGCAGCA

    6260692 AATGCGGTTG


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  14   11  0.52
  15   10  0.48

ACGTcount: A:0.32, C:0.34, G:0.32, T:0.03


Consensus pattern (15 bp):   
GCAGCAGCAGCGGCA

Left flanking sequence: Indices 6260154 -- 6260653
TTAGCAATTGTTGCCGTTGTTAGCCAAGTTGCTGCTGCTGCTGCTGCTGCTGGAGCTGCTGATGT
TGCTGCTGCTGGCGGGGCGTGCAAATTGCTAACAATTTTGATATTTAAATTATTGAGCCTGTTGC
CTGCACCGCCGCAACAGCACCAGCAACATGACAGCTCAATAAACATTCCATCAAGAATGGAGTGT
AAAAATCCAATTTTCATAAGTGGCCACGGCAACTTAAGGCATTTCAGGCTACTGTCCTTAGCCTC
GTCCTTGCATAAATTAGCAGCTGCAGCTGCAATCGCGCAGTCGCTGCCAGCGAAAGCCTAATTAT
GAAATGTATTTTTTATAAGTGAACCTAATTTGTCAATTATGCCGACCATATAGCAGGCAGTCTAT
AAGTTCATAGGGCTATATATACCCCATTGAATCATCTAACTTTCTAACAACGAAAACATTCACCT
ACTTTTCCACACCATTTCATAATCATAATCCCAGTTGGAGGAAGT


Right flanking sequence: Indices 6260692 -- 6261191
AATGCGGTTGGCAATTAAAGACCTCAAAACGACGATGGACTGGCTGAAAAGGATTGGTAGCGACA
CTCGAATGCTGGTTTTTGTGGTTATTACCTCTTTTCTGGCCACTTTCAGTCTCGAAGATGGCTGG
CTTTACCATGGAGCCCTTCACTCCGCGGCTGTTTATTTTTTCCTACTGATTAATCACTTTGGCGC
GTATAATAAATTAAAAATTTCAGCAATTTTGAAAGTCAATTAATCATCGGGGAAGGCACTCGGTT
TGTTGTTGTTGCTGCTGTTGCTGTTGCCGCTGCCGTTTTCTGATGTTGCTACCTTTTTCATTTCT
GCTGCCTTTGAGCCAGGCATAGACAACAGGAACAACAGCAACATCAGCCACCGGGCGACTCAAAA
ATGTCAGCCCATGACTACGCGCTGCACATTTAAGATGATGATGATGAAGTAGCCGGCAGATCAGC
TTGGAGTTTGGATCTTCATGGCCACGGAGATCCGAAAGGAACGCC



Found at i:6264463 original size:12 final size:12

Alignment explanation


    Indices: 6264446--6264472  Score: 40
    Period size: 12  Copynumber: 2.2  Consensus size: 12

    6264436 CGAACCCAGA

                   *    
    6264446 CTGCTCATACTG
          1 CTGCTCACACTG

                    *   
    6264458 CTGCTCACGCTG
          1 CTGCTCACACTG

               
    6264470 CTG
          1 CTG

    6264473 ACACACAGAC


Statistics
Matches: 13,  Mismatches: 2, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.11, C:0.37, G:0.22, T:0.30


Consensus pattern (12 bp):   
CTGCTCACACTG

Left flanking sequence: Indices 6263946 -- 6264445
TGGTAAGGCAGACAATTGCCCCTGGTGTCGGGATGGAGATTGGAAGCCAGGTGAGCCAGGTGGAC
AAGGAGGAGCAGCGGCAGCTTGGCCAGGACCCAGATTGCCAAGATCCAAGTGCCAGACCCAGACC
CAGTTTCTCGTTCTGTTACTGTTTCCGTGGCGACCTGTGAGCGGTTCATACCTGCTGTGATAAAT
CAACGTGAGACTAATGCGCTCTTAACACGCGAATTATGATTTTGCAAATGATGTGAAGTGGGTTG
AATCCAAAAAAAAAAAAAAGAAGGAGTGCTTTTTGGCCGGGGAAGGGGAAAAAAGTCCAGTCTCT
TGATTGCTTTATAATCGCCACGGTGTCTTGTGTCTTCGAGCCTGGGCACTTAATTGCAGTTTAAA
GAGTCTACCGATGGGAAAGTGACCCCTGAACTATTGGTAATTAGTTTCGAGCCTGGCACAAGACA
AAATCAACAGCAAATCAACACATGGGCTTGGCTTTCGAACCCAGA


Right flanking sequence: Indices 6264473 -- 6264972
ACACACAGACCCAGTAAAGTGAACGTCTGAGCATTTAACCCAGTTATTATGACTGCCATTTATAA
CCAGGAATGGCCAGCCTGCGTTTCGTAGGCCAAAAGCAAGGGGGGGCACAAGAAGCGCCTTCAGT
GCGGCTCCATTGGTTGTGTGGGTGTCCTTTTGACCCGCATGTCGTTTATGGCCAACTCTGCTGCT
GCTGCTGCTGTTGCGGTGGCCATTTTGCGGTCCTGCCCTGTTTGTCATCCTCCCACCGCCCCATT
GTTGTCCATTCGAGGTCGTCACACAGTCAGGACCTTTACCACCACCCACCAGCCATCATCGCAGA
TACTCAGCCACCTAGGAGCAGAAGCTGCGGAGGGCAAGGAGTCGATGGTCGATGGCAAATGCCAC
TGACAATGGCACAGTTTTGCATGCAATTGACTTTCACAGCTCGTTGCTTTTTACTGTCTGAATGT
GTTGGCCCGAAAGGAGGAGGGCTGTAGCAATGTGGGTGGGACTCG



Found at i:6267680 original size:11 final size:12

Alignment explanation


    Indices: 6267647--6267680  Score: 61
    Period size: 12  Copynumber: 2.9  Consensus size: 12

    6267637 AAATCCAAGT

                        
    6267647 CCTTCTTTTAAG
          1 CCTTCTTTTAAG

                        
    6267659 CCTTCTTTTAAG
          1 CCTTCTTTTAAG

                       
    6267671 CCTT-TTTTAA
          1 CCTTCTTTTAA

    6267681 ATACTCGTTA


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  11    6  0.27
  12   16  0.73

ACGTcount: A:0.18, C:0.24, G:0.06, T:0.53


Consensus pattern (12 bp):   
CCTTCTTTTAAG

Left flanking sequence: Indices 6267147 -- 6267646
CCAAAAGCAAATTGTTAAGTTATTTGTAAATTTCATTGTTCGCCCCGCTGCCATCGCAGTGTATA
TTCAGTTGATTTCGGGTAGCAGAAGTCTGCGCATATGTGCGATATCTCCCGATTTTTGCAACCAT
TTTTTTTTTGTATTTCATATGCGGCAACTGTGGATTTTTGTTTCGTTTGGGGCCAAATCCTTTTG
GCAAATTTTATATGCATCATAAAAAACGCCACCGCTACGAATTAAATAAATTTCACATTTCTGAA
TACCCTGGAGTTGGGTAGATGCAGCTAAGCCGGCAAGCTGGTGTTAATCCTATTTAAACTGCAAC
TGAACAAATCAGGCAATTTGTACAATTTAGAATTAGTTTTCAGATTGAAAACGCTTTGTCTGCTT
TATCACATGTTAGTTTATTTGTGAATACTATTGGGTGCAATATTTCTACAATTTCGTAAACGAAA
ATATATTTTTCTGGGTATTGTGATTTCAAATTGGCAAATCCAAGT


Right flanking sequence: Indices 6267681 -- 6268180
ATACTCGTTAACCCCTGGCACACACTCTCCACTTGTTTATGTTTTCATTTGTGCCAAATAAAAGC
CTTTTCATGTGCAGATTTTATGTTTGTGCCGCTTTAGGTTTTTCTTTTATTCCTGTTTTTGTTCT
CGTGTCTGGGTTCTTTGCCAGGATTCTTATATGCAAATTTATTGGCATTGTTCAGGGGTGGCTTG
TGAAAATGGGTCACATCGCGGGTATTCGCGGGTTTTGGCATTCTGGTGTTCCGCAACTCATTTGT
GCACTTCTATTAGCATTGATGGACCTGGGTAGGAATATGAAAGATTGGGTGGGAATTAAAGCGCA
CTCGAGACCCTTTGAACTCTCGGTAACCACTTAAAGTAACCACTATCGCTGGCCTGCATGTGCCG
GAGCACTTAAGGCAATTATCATGGCCATATTTGGCCGTGTGGCTTGGTGCTGTAGCCAAAAATGA
ACTGAAGCTTAATTTCATTTATCTTATCCCGGACCGCCCTAAGGG



Found at i:6273364 original size:11 final size:11

Alignment explanation


    Indices: 6273350--6273372  Score: 39
    Period size: 11  Copynumber: 2.1  Consensus size: 11

    6273340 CACTCCTTTT

                       
    6273350 ATATTTAAAAA
          1 ATATTTAAAAA

                  *    
    6273361 ATATTTTAAAA
          1 ATATTTAAAAA

             
    6273372 A
          1 A

    6273373 ACGATTAAGA


Statistics
Matches: 11,  Mismatches: 1, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  11   11  1.00

ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39


Consensus pattern (11 bp):   
ATATTTAAAAA

Left flanking sequence: Indices 6272850 -- 6273349
TTTCGATAATTGACAAACATTCCGGCTGACAATTCCATTCGATCGCTGCTAATTGAGAGAGAAAG
CCAAATGTCTAACAATCGGCGAAGGCCACCCATGTGAAAAAAAAAACATATCCATTCCATCCGTC
AGTTGTTGGCCCATTTATGAGGCGGCGAAATAAGGTTAAGAGTGACACCCTGGAGACCTACATAT
GCGGCTGGCGAATCTGAATCTGAATTCGATTCCGAAACCGAATCCAAATCCGCAACTGATTTGCA
TTTCAGCCTAACGACTCGGATGCAGGGCGAATTCAGGACAGTCGCCGACTTGCCAGTTGCATTTC
ACATGGATTTATGCAAGCCATTCGCACCGCCTTGCCATTTCATTTTGGTCTCGACGGCCGCGGTT
ATCACTCTGATCGCTTGGCTTTTTCGTTTTAGCCAGTTCTAGTGGTGCCAAAACGTATTTTTTAT
AGCCCAGGCCCTTAAGGAATTTTGGCCTTCTTTTGCACTCCTTTT


Right flanking sequence: Indices 6273373 -- 6273872
ACGATTAAGATAAATATTCTATAATATTTTATAAAAAAAATAAATAAGGAATATACTTATTGTTA
TTAAACAAGTCCGCTTTTTCATTTATTTTCATAACTCTGAACTGAAGCCAGAATATTTAGCATAA
TAAAAGTGGCCAGCTCTGGTGGTGCCTGTCATTCGGATCTGGGTCTTTGGGGAGCCTAGAGTCAT
TAAAATATATGACACCCACAGATCCGCGATGCATCTGCGTCTTTATTGCGCTCTCTTTCGCTCAC
CTGTCCGCTTGCCTAATTAGACAGCGTGGTGCCATCTCTTTCTGGCCTTTTATTATGGGGACCCA
GCCCGCTTGGTTTTGCTTTCTTCGTGTGTGGTCCAATTAATTTTTCGGATAGAGCAATCAACAAG
TTTCTTTTTGGGCTCTTGCGACCGCCGCTGCCTTTATGGCTGTTGTTCAACATGTTGCAGGTCAA
TTTGTTGGCCGCTTGTCGTCTGGTCCTCCAGAGAAGAAGATACCC



Found at i:6278710 original size:11 final size:12

Alignment explanation


    Indices: 6278688--6278712  Score: 43
    Period size: 12  Copynumber: 2.2  Consensus size: 12

    6278678 TCAATTTAGC

                        
    6278688 TATTTTTGCGTT
          1 TATTTTTGCGTT

                        
    6278700 TATTTTT-CGTT
          1 TATTTTTGCGTT

              
    6278711 TA
          1 TA

    6278713 ATGAAATTAC


Statistics
Matches: 13,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  11    6  0.46
  12    7  0.54

ACGTcount: A:0.12, C:0.08, G:0.12, T:0.68


Consensus pattern (12 bp):   
TATTTTTGCGTT

Left flanking sequence: Indices 6278188 -- 6278687
GCAGCAGCAGCAACAGCAGCAACAGAATGCACCACGTGTGTTTGTCATTGGCGGAGAAAGGAGAT
GGTTTTACCTGTCATGTTGACGGTTCTGCGACATGACCGAGCTGCCAAAACGAGCTGCACACGCA
AATTGCTAATTGAATTTAAATTGCACTTTAATTTGATGAGCGGCCCGAGATGATAAATTGTGCAA
ACGCCCTGCCGAATCGCTGACCGCAACAATTGAGAGCGAATTAAGGATTCGACATGCCACTTTCA
CTCTGCCATGACGAGTTGCACCACCCTCCCAATCTCATTGCATCATTGCTCCACTGCACCACCCA
GCCAATCCACCCATATGCATGGGTCTGTCTCGCCCACGATTGTGTACCGCTCTCATAAATTGCAA
CCTATTTAAAGTGGGCAACCGGTCGAGTGCCATAATTTTTAGCTCTAATTGCGCCACTGGAAAAA
GGGGATTTTGCGTCTGCAAGCGAGACTGGTCGCAGTCAATTTAGC


Right flanking sequence: Indices 6278713 -- 6279212
ATGAAATTACAATAAACGCCCGTCGCATGCAAAGGAGCCCAGCCAGCCAGCCAGCCAGGCAGCCA
GCGCATTCCCATGCAGTTGGAGCTGCTGGTGGCGGAGAAGGCGGCGTGAAGTGGGTGCACTGCAT
CTGCACGGGTGAAATCCCCCTACATGAGCACATGAGCAGTTGGCACCACAAAGCGCCCATTAGTG
CGTTGGCGTCGTCGACTAGACTCGATTTTATTTAGCTTTGACTTGCTTTTCTTTGCTTTACTTAG
CTGCACTGGGAGAAAATCAATAGCTTGAAATTTGGCAGCACAAATGCATATGATGCAGTTCAATG
CTCTGTGAATTTGCGGTAAAACCAATTTCTGCGAGTGTATCTCTTACCTAGGTTTGGAAATCTTT
AGCGCGGTGTTAGTTACCTTTCGCTGGGTTTTCGAGCCGACTCAGATTGCGCTCTGAGGTAATCC
CCATTATTAGCGCAATTAGTGCAACCGCCTTGGCAGTTGGATGGG



Found at i:6280030 original size:12 final size:12

Alignment explanation


    Indices: 6280008--6280039  Score: 41
    Period size: 12  Copynumber: 2.6  Consensus size: 12

    6279998 CGGCTGGGTG

                         
    6280008 GGTTGTGGGTGAT
          1 GGTT-TGGGTGAT

                      * 
    6280021 GGTTTGGGTGGT
          1 GGTTTGGGTGAT

               *   
    6280033 GGTGTGG
          1 GGTTTGG

    6280040 TGCGGTGGAG


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  12   13  0.76
  13    4  0.24

ACGTcount: A:0.03, C:0.00, G:0.59, T:0.38


Consensus pattern (12 bp):   
GGTTTGGGTGAT

Left flanking sequence: Indices 6279508 -- 6280007
CACCGTTAATTATCAATATTATTATCATTAGCCTAATCGCCTTTCATACGGAACTAACGAGCCTT
AATAGTTCATAATTCGCTCCGATGAGTCTGCTGCGATGTGGTAAACAAACACCTGCTGCTCGATT
CTGGCAGCGGGATTTTTGCATTAACATTCCGATGGCTCACATGGCTGGAGCGTTTGGCCTGAGGG
ACGATTCGCTATAATCGCTATGTGCTGCACTGGAATACCAAAAGGATGCAGCACCACCCACCCGC
TAACCTGAACCACTACGCCGTTGCCACTGCCTCAATTACAAGCTGCTCCTGACAGCCAGCGCTAC
GTGACACAACCCACAAGGAGACGAAACACCTGTTGCATTGGCTACTGGTAGGAGCACCACCTAGC
CACCACCGACCCATGCTGATGTCCGTTAATCGAACACCGCACCGCATAACTTGTTGGCGCTGACA
ACGAAAACGGGATTTTGAACACTGATAAAAGGCGACGGCTGGGTG


Right flanking sequence: Indices 6280040 -- 6280539
TGCGGTGGAGCTGGGAAATCAAGAAAAACCATATTTAATAAAATGACAGGGGCTGTCAGACGCCG
TCAAAAGAAATACATTTTGCTGCCTGGCTGGCTGACTTGGCCTGGCTGTTTGGCTGGCGGGTTAA
CTTGGCTTGCGAGGCACGAGCTTTTGGCCAGCAGCAGCGGCTGAAACCGCAGACAGTTACAAAGC
CACCCGCCACCAGCAGCAGTCATAAAGCAAAACAAGACGGCCAAAACAATGCCAATGACAATCGA
CGATTATTGAACATTGTGTATTATTTGTTGTTGCATTTTGTCATTCTGTCTTGTCGCCTGTCCCT
CCCATTGCAAGACCCCCGTTTCAGGCCACTTTTCCCTTTGGCCCAGCGCAATATGGCCAATTAAT
ATTAACGTGGGCGTGCGCCTTGTTTTCAATAACCCACCGAGTGAGCCACTCTGATGAAGGAAATG
TTATGCAAGGCAGGCACCGATGGATCCTATGTCGTAACTCCGACT



Found at i:6285265 original size:21 final size:21

Alignment explanation


    Indices: 6285240--6285284  Score: 69
    Period size: 21  Copynumber: 2.1  Consensus size: 21

    6285230 GCTGGGCAAG

                  *  *       *   
    6285240 TGGGTTTTGTGCTCTGGGTTC
          1 TGGGTTCTGAGCTCTGGATTC

                                 
    6285261 TGGGTTCTGAGCTCTGGATTC
          1 TGGGTTCTGAGCTCTGGATTC

               
    6285282 TGG
          1 TGG

    6285285 CCTTTTTTCC


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.04, C:0.16, G:0.38, T:0.42


Consensus pattern (21 bp):   
TGGGTTCTGAGCTCTGGATTC

Left flanking sequence: Indices 6284740 -- 6285239
TCCGAGCGTTGGCTGCACTGCGTGCGGTCTAATTATTTTATGACAAACGCAACTTGTAGGCGGAC
CCCCTTGGGGTAAAATATATTTCAATTCAACGGCTGGTGGTTGCTGGCTAATTAAAATTTCAAGC
CAGCTTCGTTTACAATCGACATTAAAATCAGGCATACATATATTACATATTGATTTATGCCACAA
ATAATAAATAAATAAATAAAAGATTCGGGCTAGCACTTCCTTTTCGAGTGACACCAGCTCCGCAG
GGGTGCGTTCCACCTGACTAACACTTGCGTTTTTACGATGCCCCCCCCAGACCCGGGAGACACGC
ATAGATCAAGTGGCCCCAAAAGGGGGCCAAGAGTTTACGGCCCTGCTACGGGAATCGTTTAACTT
TGATTTCGGATTTCTGATTTATTTGCCCAAGTCGCAGGCAAAATGCATCTACGAGACTGCCAGCG
CCCGGGGTCATAAATTTCCTCGTTTCCATCGCCCAGCTGGGCAAG


Right flanking sequence: Indices 6285285 -- 6285784
CCTTTTTTCCACCCGGCGCTCAGATTTTTTTTTATTCATATCAACGGTAAAAAACTCACCATAAT
TTTTAATTGCACAAATTTATGGCCTGACTGAGGGGCGTCGCACTGGTCCAGATGATGGAGAGCCT
CGAATCGAAGCCCGATGACGGCGTTAGCGGTTCTTTTGTCCCCCGGCGGAGCATTGGCTATCAGT
TGACCATTTTACAGCCGATTTATTTGCGTCCGCGGTAGATAAATAGCCGCGGCTCCAAAACGACA
TCCCCTTGAATCCAGCTCAAGCGGCGCTGGACATTAAAATCAAATAAAATCAATGCTTAAAATTC
GGCTCTTTAATGAAAAGTCGAATGCCATAAATCAGTAATCCATACGAGAGCAGTATACTGCCCAC
ATTGCCAGCACATCTCGCCGGTCTGCCAATAAAACTCATTGTAATGATGCATTTATAAAAATGTT
AAAATGTTTGCCTTCTTTGTGTACGCCCAGCGAGATATAATATTA



Found at i:6286185 original size:22 final size:21

Alignment explanation


    Indices: 6286160--6286202  Score: 63
    Period size: 22  Copynumber: 2.0  Consensus size: 21

    6286150 CGAGCTAAGC

                                  
    6286160 GCAAACAAACAAACAAGCCAAA
          1 GCAAACAAACAAAC-AGCCAAA

                   * *           
    6286182 GCAAACAGATAAACAGCCAAA
          1 GCAAACAAACAAACAGCCAAA

    6286203 TACATTGAAT


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  21    7  0.37
  22   12  0.63

ACGTcount: A:0.60, C:0.26, G:0.12, T:0.02


Consensus pattern (21 bp):   
GCAAACAAACAAACAGCCAAA

Left flanking sequence: Indices 6285660 -- 6286159
CAGTATACTGCCCACATTGCCAGCACATCTCGCCGGTCTGCCAATAAAACTCATTGTAATGATGC
ATTTATAAAAATGTTAAAATGTTTGCCTTCTTTGTGTACGCCCAGCGAGATATAATATTAAAATT
AATTTAACAGCCCAACAAAATACCAGAAAATCAATGCGTTACACACAATACAAAATGAGGCTCAT
TTGGGTATTCATAAAATAAAATCGGGGGAAAAGGTGGATTCCGATCCGGCAGAATGCTCGTCACT
CGCCAGCTTGTATCCTTGGCTGATATCCTCTTTTGGTATTTAAACTCTGGCACTTGCCTCTGTTT
TAGATAAAAAATATTTGGCATAAACACCAAGAATTGCTACAGCAACGACGGGAACAACTGCAGCA
GAGCCCCTCCCATATACTCTCCTTTTGGCCGCCATAGAGGATCCAGAGGATCCCAGCTCTGGGGG
CTCATATTTCAATTTCGATTTTTAAAAACGATGTGCGAGCTAAGC


Right flanking sequence: Indices 6286203 -- 6286702
TACATTGAATGAGTTTATACCGTACATGTGTATATATGCATAATATGTATAGCTGCACTGGGAAA
AAAATTGAATAGTAATAGTAAATGTATCTCTTAGAACGAAAACTACTCACCATGACTATGAATTA
TAAAACTATACGTTTTGTAAGTTTATTATGAAACATAACCAAATGAAGTAGAAATAGAAGTAGAA
TGTGTGACTATTGAATGCAACTGAAAAGGAATTTATCCTTAAGAAATAAAAAAAAAAATGATTGT
TCAGCATTAATTTTATCTTTTTTTGCAGTGTTTCGCGGATGCTGCTCACATATCTATGCGTTGTG
TCCGACATGGGATGCGACACGGATGCGACTCGGAATTGGAGCTGGGACTGGAATCGAAACGCGGC
GGATGGCCTGCTGGTTGGCTGGTTGGATCTCGAAGGGAGGATGGCTGGAGGGGATCGGCTGCCGT
TCGCACAAACGCATTGCAACTTTGGCCCTGGCAGCGCCGATGTCG



Found at i:6286394 original size:12 final size:11

Alignment explanation


    Indices: 6286373--6286397  Score: 41
    Period size: 12  Copynumber: 2.2  Consensus size: 11

    6286363 AAACATAACC

                       
    6286373 AAATGAAGTAG
          1 AAATGAAGTAG

                        
    6286384 AAATAGAAGTAG
          1 AAAT-GAAGTAG

              
    6286396 AA
          1 AA

    6286398 TGTGTGACTA


Statistics
Matches: 13,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  11    4  0.31
  12    9  0.69

ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16


Consensus pattern (11 bp):   
AAATGAAGTAG

Left flanking sequence: Indices 6285873 -- 6286372
AAATCGGGGGAAAAGGTGGATTCCGATCCGGCAGAATGCTCGTCACTCGCCAGCTTGTATCCTTG
GCTGATATCCTCTTTTGGTATTTAAACTCTGGCACTTGCCTCTGTTTTAGATAAAAAATATTTGG
CATAAACACCAAGAATTGCTACAGCAACGACGGGAACAACTGCAGCAGAGCCCCTCCCATATACT
CTCCTTTTGGCCGCCATAGAGGATCCAGAGGATCCCAGCTCTGGGGGCTCATATTTCAATTTCGA
TTTTTAAAAACGATGTGCGAGCTAAGCGCAAACAAACAAACAAGCCAAAGCAAACAGATAAACAG
CCAAATACATTGAATGAGTTTATACCGTACATGTGTATATATGCATAATATGTATAGCTGCACTG
GGAAAAAAATTGAATAGTAATAGTAAATGTATCTCTTAGAACGAAAACTACTCACCATGACTATG
AATTATAAAACTATACGTTTTGTAAGTTTATTATGAAACATAACC


Right flanking sequence: Indices 6286398 -- 6286897
TGTGTGACTATTGAATGCAACTGAAAAGGAATTTATCCTTAAGAAATAAAAAAAAAAATGATTGT
TCAGCATTAATTTTATCTTTTTTTGCAGTGTTTCGCGGATGCTGCTCACATATCTATGCGTTGTG
TCCGACATGGGATGCGACACGGATGCGACTCGGAATTGGAGCTGGGACTGGAATCGAAACGCGGC
GGATGGCCTGCTGGTTGGCTGGTTGGATCTCGAAGGGAGGATGGCTGGAGGGGATCGGCTGCCGT
TCGCACAAACGCATTGCAACTTTGGCCCTGGCAGCGCCGATGTCGCCGACGTCGTTGCGAAATGT
CCAAAAATGAGGAACAAACATGCGCATGAATTTTGCAACTTGCCACAACCGCAGGTTCAGGTTCA
GCGTTCAGCGTTCAGCGTTCACCATCAGGACTAACAAGTTGGCCCCTGCCAGAGCGGCTGTTTCG
GCCAGGAAATGCAGCACAAATAAATGAGGCAGCAGTCGCTTGACC



Found at