TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_X assembled 2004-3-18 md5checksum:d304f6c7f10939bacf40e33958147342 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 22224390 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Warning! 8514 characters in sequence are not A, C, G, or T Found at i: i:20473370 original size:6 final size:6 Alignment explanation
Indices: 20473359--20473373 Score: 30 Period size: 6 Copynumber: 2.5 Consensus size: 6 20473349 AATAAATTAT 20473359 ATACAA ATACAA ATA 1 ATACAA ATACAA ATA 20473374 TAGTGTAATA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.67, C:0.13, G:0.00, T:0.20 Consensus pattern (6 bp): ATACAA Left flanking sequence: Indices 20472859 -- 20473358 CAAACTTTGAGTGGATTGTAGAATGTAATGTTTGAAAAGATGTGAAGAAACCTGTCTTCGTACAT AACAATCTAAGTTTAATACAAATTGGTGACCCGAACATTATGTTTTAAACCATTCACCATTCAAT ATCGCTCTGATCAAGGAAATAAATAGTGAAAATAATACTAAATCATAGTGCTAAACTAGGAATAT AAGAAACAAATGTGGTTCAATCAGTTGCTGATCCCCCCCGCAAAGCTTAAAGTTCAAACCTCACA TTCGATCTTTCGATCTTCGTGCGAAAACCGGTTGCGAATAGCTAATTTGTGGTCAATTAAAATTA CCATAAATCGAAGCGTCGGAATTGGGTAATCAGTGCTTGTCTGGCCCCGATGAAAATGAAACAGT TGACAGCTGTCATTCGATTACAGGGAATGCATCAAGCATCAACTTTGATTTGTACACTACAAGAA AATAATAGTTAAAACTAAATACTAAGAGTTGTGAAAATAAATTAT Right flanking sequence: Indices 20473374 -- 20473873 TAGTGTAATATATAATATATGTAATAATTTGAAATCGCTTAGTTTCCAATATTAAAAACTATAAC TATTATATTAAATAGTAATATTTTATTAACTAAAAGTCGTGTTAAAAATTACAAAAAGGCCGAGC TTACTTTTTCCGTGTACTTAATTCTTCTTTAATGTTTTTTCTTTCTATATAACAAGCCGACATCG ACGTTGGCGGCGTTATGCAAATGCTCACACCCAAAGGATGGAAAACAAGCGGAAAACCGAAGGGT TTTTGTGATTTCCTCGGAAAAGTGCGTGCGCAACTCTTTGAGGGGAAAACCCAACCCGCTCGTTT TTCCACTGTGCTGGTCAGTTTTTATTAGACCGCGAAAAATCAACAGTGGCCGGCTCGTCGGGGTG GTCTGTTTTCCGTTTTTCCGATCAGATCCTTTGGCATCGAGCCGCCTGCCTTTCTTGTATTTGGT CCTTACGCGCACGCCGCTAAAAGGGTTTTATTACAGCCTCCTGTA Found at i:20474359 original size:6 final size:6 Alignment explanation
Indices: 20474348--20474379 Score: 50 Period size: 6 Copynumber: 5.3 Consensus size: 6 20474338 GCCTCCTTCA * * 20474348 GCAGTT GCAGTT GCAGTT GCTGTT GCTGTT GC 1 GCAGTT GCAGTT GCAGTT GCAGTT GCAGTT GC 20474380 CTTCTGGGAA Statistics Matches: 25, Mismatches: 1, Indels: 0 0.96 0.04 0.00 Matches are distributed among these distances: 6 25 1.00 ACGTcount: A:0.09, C:0.19, G:0.34, T:0.38 Consensus pattern (6 bp): GCAGTT Left flanking sequence: Indices 20473848 -- 20474347 AAAGGGTTTTATTACAGCCTCCTGTAAAATGTAATGTCATAAAGTTCCGAGAGCAAATATTGCAG CAAGCTACACCGTGGAAAAATATGTGTTGTTATGGAAAGTAAATAAGTTAGTTACGTTAAGTGCG GATATGTAAGATAAGAACTATTGTGCTTAATAGAGTTGCGGTTGCGATAAGAATTGTGATAAACG TACTGATGGCTTGTATTTAAATTTAAGATTATTTTTTTTTAATTTAGCCACTCATTGAAGTTCTA AGTTCAGTGTATGCATTCAAAGTGGCAGTATATGTTTAGCGTTTTACTTAAGGCGTTTTGAAAAT ATGATGCCAAAAATTCTCTTGTATATATACAAGATTAGTGTCTGTGTGCATCTTTCGAGTAATTA AGTTGGTATATTTGAAATAAACTTTTTTGCGCAGTGTACGATTTGGACTCAACATTTACTTTTCG CGTCGAGTGAATGAAAGGGGAAAGAGTTGCACTCAGCCTCCTTCA Right flanking sequence: Indices 20474380 -- 20474879 CTTCTGGGAATCATTTGCGCCCTCGACCTTCCGCTGACCCATCGACCTGGGCTAATTTACATAAA CCTACGCAAACATCCCAGGAACAACAAACAGTGCGTTCCCGAAAGGGTGAACCGACATCCCAGAT GTTGTTCTGCACCGAAAGAAACCTGTATTGAGTGGCAACTTTCAAAAAGAGACACATTAAATGGA ATTGAATGGGTAACAATCATAAAAAATAATCAAGTAAATAGTTGGAGGTGGTCGAATGCCGATTA TGGATAAAATAATTTGATTCCTTGACTAAACTTATGATGCTTAAAAGCTTATACTTAATCGCAAA AGTTGGATATTTCTAAAACAAAATTTTAGCTACTTGCCTTGGCAATGTAAAAGGTCTGAAGTAAC CGTATATAACTGAAAACATCGGTAGTGCATTTTTTCCAATGCAGTTCGTAGTTTTGGACCCAATT AGAGCCCCTACTCCCACGCACGTGTCTTTTTTTGGCCCTGCACTT Found at i:20475237 original size:6 final size:6 Alignment explanation
Indices: 20475226--20475245 Score: 31 Period size: 6 Copynumber: 3.2 Consensus size: 6 20475216 GTCCATTAAC 20475226 CATTCA CATTCA CCATTCA C 1 CATTCA CATTCA -CATTCA C 20475246 CACGCACCAT Statistics Matches: 13, Mismatches: 0, Indels: 2 0.87 0.00 0.13 Matches are distributed among these distances: 6 7 0.54 7 6 0.46 ACGTcount: A:0.30, C:0.40, G:0.00, T:0.30 Consensus pattern (6 bp): CATTCA Left flanking sequence: Indices 20474726 -- 20475225 AATTTTAGCTACTTGCCTTGGCAATGTAAAAGGTCTGAAGTAACCGTATATAACTGAAAACATCG GTAGTGCATTTTTTCCAATGCAGTTCGTAGTTTTGGACCCAATTAGAGCCCCTACTCCCACGCAC GTGTCTTTTTTTGGCCCTGCACTTGTCGGCTCCCATTCCCTAACTTTTTCGGTTTTTTGGACGGA TCCCTCTGACAGTTGCTGTTGTTACGGTTCACCATGACCAACGCCAACAATTACCGCCGCAATTC TATTGTCTCTCGATTTCCTGGCCCCTGCACATGTATGTACATATATGTACATATAAGTATAGGTT TTTTTTTATAGCTCATTTCCCACATGTCGCGGAGTTGGCCCTCTTCGGGAATGACACTTCGGAAC CATTTTAATGAGCCCAAATTACTCGCTCAAAAAAGGGAGAAGACACTGGATGCACATGTCCAGTC GCTCGGGCGGAAGTTGCCATTAGCCGTTAACCATTGTCCATTAAC Right flanking sequence: Indices 20475246 -- 20475745 CACGCACCATTCACCAGTTGGCATCGATCCCGACGATCCTCATCCTCATCGATCTGCGAAGACAA AACCAATTAAGACTGTCAAACAAATTTTAAGCGCCAACGGAATTATGATTATTAATGAGGGTTCA TTGTTTATGACTCTATTTAAGGTATTTTCCGAATATATGGGAAAAAGTACACTTTTAATTAGTCA TCCACTTGTGTTTTCAAGTTTTTATTGGAATAGAGAACCATCTTTAATAATATATATGCACGTTT TAAACTTAGTTCAGTAATTATGGGACACTTTTTGAAATTCTTATTCATGCGATTACAGAATAATT TGTAATGAGTCTTATTATAAGCCCATAACTTTCTGTATTTGCAACAAAGTTCGGTTCATTTACGA TATATGTATGTACATAAATACGATGCTTTGATGTTCTGTTTCCCTGTATATCCCTTACAAGTGGC CGGAATCCGTTTTACGAGCTCATCTGGCGGATCGTTTCGCACATT Found at i:20475292 original size:6 final size:6 Alignment explanation
Indices: 20475281--20475295 Score: 30 Period size: 6 Copynumber: 2.5 Consensus size: 6 20475271 GATCCCGACG 20475281 ATCCTC ATCCTC ATC 1 ATCCTC ATCCTC ATC 20475296 GATCTGCGAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.20, C:0.47, G:0.00, T:0.33 Consensus pattern (6 bp): ATCCTC Left flanking sequence: Indices 20474781 -- 20475280 GAAAACATCGGTAGTGCATTTTTTCCAATGCAGTTCGTAGTTTTGGACCCAATTAGAGCCCCTAC TCCCACGCACGTGTCTTTTTTTGGCCCTGCACTTGTCGGCTCCCATTCCCTAACTTTTTCGGTTT TTTGGACGGATCCCTCTGACAGTTGCTGTTGTTACGGTTCACCATGACCAACGCCAACAATTACC GCCGCAATTCTATTGTCTCTCGATTTCCTGGCCCCTGCACATGTATGTACATATATGTACATATA AGTATAGGTTTTTTTTTATAGCTCATTTCCCACATGTCGCGGAGTTGGCCCTCTTCGGGAATGAC ACTTCGGAACCATTTTAATGAGCCCAAATTACTCGCTCAAAAAAGGGAGAAGACACTGGATGCAC ATGTCCAGTCGCTCGGGCGGAAGTTGCCATTAGCCGTTAACCATTGTCCATTAACCATTCACATT CACCATTCACCACGCACCATTCACCAGTTGGCATCGATCCCGACG Right flanking sequence: Indices 20475296 -- 20475795 GATCTGCGAAGACAAAACCAATTAAGACTGTCAAACAAATTTTAAGCGCCAACGGAATTATGATT ATTAATGAGGGTTCATTGTTTATGACTCTATTTAAGGTATTTTCCGAATATATGGGAAAAAGTAC ACTTTTAATTAGTCATCCACTTGTGTTTTCAAGTTTTTATTGGAATAGAGAACCATCTTTAATAA TATATATGCACGTTTTAAACTTAGTTCAGTAATTATGGGACACTTTTTGAAATTCTTATTCATGC GATTACAGAATAATTTGTAATGAGTCTTATTATAAGCCCATAACTTTCTGTATTTGCAACAAAGT TCGGTTCATTTACGATATATGTATGTACATAAATACGATGCTTTGATGTTCTGTTTCCCTGTATA TCCCTTACAAGTGGCCGGAATCCGTTTTACGAGCTCATCTGGCGGATCGTTTCGCACATTTCGCA CAATCTGTAACTCGATTTGTGTATCTGTGCGGTAAACAAACTCTA Found at i:20476076 original size:5 final size:5 Alignment explanation
Indices: 20476066--20476083 Score: 27 Period size: 5 Copynumber: 3.4 Consensus size: 5 20476056 CTGGCGCTTC 20476066 TTGGG TTGGG TTTGGG TT 1 TTGGG TTGGG -TTGGG TT 20476084 TTCCTCGAGG Statistics Matches: 12, Mismatches: 0, Indels: 2 0.86 0.00 0.14 Matches are distributed among these distances: 5 7 0.58 6 5 0.42 ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50 Consensus pattern (5 bp): TTGGG Left flanking sequence: Indices 20475566 -- 20476065 TAATTTGTAATGAGTCTTATTATAAGCCCATAACTTTCTGTATTTGCAACAAAGTTCGGTTCATT TACGATATATGTATGTACATAAATACGATGCTTTGATGTTCTGTTTCCCTGTATATCCCTTACAA GTGGCCGGAATCCGTTTTACGAGCTCATCTGGCGGATCGTTTCGCACATTTCGCACAATCTGTAA CTCGATTTGTGTATCTGTGCGGTAAACAAACTCTAACTCAGACGCAGTCCATGGGATGCACAAAA GATGCGACAGATATTTATGAATGAATGCGGCAACTTGTGTGCCTTCCAGATTTCCCGATTTTCCG ATTCGCATCTTAATTCGAAGGGGATGGCCATATGGATCATGGAAATGGATAATGGAATGTCATGT AACCCAAGAAGCAGGCTCACTTCTCTACGCTTCGTTTATCAGTTACATTACCATGCGTATCTCTC GAATACTTACGCCTTGGCTCTTTGGCTCTTTTTACCTGGCGCTTC Right flanking sequence: Indices 20476084 -- 20476583 TTCCTCGAGGACTCGCCATCCTTGTCCTCATCCTCATCCTCATGTTCGTCTTCATCATTATTTTC ATCGCAGCTCCCAGAGGAAGTTCCAATTTGCTACATCAATGAACCATGGCCCTGATTTGCTCATC AAGTGTCTTTCCCCTCCTGTTCCCTGTTCCCAGTTCCCAGTTTCCACTTCCCAGTTCCCTGGGCT CTCATCGTCCTGCGTCCTGGGCTTGTATATTTTTTATACTTTTCATACTCCACCCCAGGACCTTG TTCGCATTTCTTTATTCCATTCGTTTGTTGTGTTGGGTGCTTTTTTTGGGCCTCTGATTTCTGAC ACGGCGCTGACTGTCGGCTGTCAGCAAAAATCATCTTTGGATGCGGACTAGCGAGGGGAGGCGTT AAAGTTTTCATCTACCGCACTACTACACGTAGAATAATAAGTTATATCGGATTTTAATATACTTT ATATATCATATTGATCATATATTATTAATAAATTAAATGTCAGAC Found at i:20476082 original size:6 final size:6 Alignment explanation
Indices: 20476066--20476084 Score: 31 Period size: 6 Copynumber: 3.3 Consensus size: 6 20476056 CTGGCGCTTC 20476066 TTGGG- TTGGGT TTGGGT TT 1 TTGGGT TTGGGT TTGGGT TT 20476085 TCCTCGAGGA Statistics Matches: 13, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 5 5 0.38 6 8 0.62 ACGTcount: A:0.00, C:0.00, G:0.47, T:0.53 Consensus pattern (6 bp): TTGGGT Left flanking sequence: Indices 20475566 -- 20476065 TAATTTGTAATGAGTCTTATTATAAGCCCATAACTTTCTGTATTTGCAACAAAGTTCGGTTCATT TACGATATATGTATGTACATAAATACGATGCTTTGATGTTCTGTTTCCCTGTATATCCCTTACAA GTGGCCGGAATCCGTTTTACGAGCTCATCTGGCGGATCGTTTCGCACATTTCGCACAATCTGTAA CTCGATTTGTGTATCTGTGCGGTAAACAAACTCTAACTCAGACGCAGTCCATGGGATGCACAAAA GATGCGACAGATATTTATGAATGAATGCGGCAACTTGTGTGCCTTCCAGATTTCCCGATTTTCCG ATTCGCATCTTAATTCGAAGGGGATGGCCATATGGATCATGGAAATGGATAATGGAATGTCATGT AACCCAAGAAGCAGGCTCACTTCTCTACGCTTCGTTTATCAGTTACATTACCATGCGTATCTCTC GAATACTTACGCCTTGGCTCTTTGGCTCTTTTTACCTGGCGCTTC Right flanking sequence: Indices 20476085 -- 20476584 TCCTCGAGGACTCGCCATCCTTGTCCTCATCCTCATCCTCATGTTCGTCTTCATCATTATTTTCA TCGCAGCTCCCAGAGGAAGTTCCAATTTGCTACATCAATGAACCATGGCCCTGATTTGCTCATCA AGTGTCTTTCCCCTCCTGTTCCCTGTTCCCAGTTCCCAGTTTCCACTTCCCAGTTCCCTGGGCTC TCATCGTCCTGCGTCCTGGGCTTGTATATTTTTTATACTTTTCATACTCCACCCCAGGACCTTGT TCGCATTTCTTTATTCCATTCGTTTGTTGTGTTGGGTGCTTTTTTTGGGCCTCTGATTTCTGACA CGGCGCTGACTGTCGGCTGTCAGCAAAAATCATCTTTGGATGCGGACTAGCGAGGGGAGGCGTTA AAGTTTTCATCTACCGCACTACTACACGTAGAATAATAAGTTATATCGGATTTTAATATACTTTA TATATCATATTGATCATATATTATTAATAAATTAAATGTCAGACT Found at i:20476117 original size:6 final size:6 Alignment explanation
Indices: 20476100--20476126 Score: 40 Period size: 6 Copynumber: 4.5 Consensus size: 6 20476090 GAGGACTCGC ** 20476100 CATCCT TGTCCT CATCCT CATCCT CAT 1 CATCCT CATCCT CATCCT CATCCT CAT 20476127 GTTCGTCTTC Statistics Matches: 17, Mismatches: 4, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 6 17 1.00 ACGTcount: A:0.15, C:0.44, G:0.04, T:0.37 Consensus pattern (6 bp): CATCCT Left flanking sequence: Indices 20475600 -- 20476099 TTTCTGTATTTGCAACAAAGTTCGGTTCATTTACGATATATGTATGTACATAAATACGATGCTTT GATGTTCTGTTTCCCTGTATATCCCTTACAAGTGGCCGGAATCCGTTTTACGAGCTCATCTGGCG GATCGTTTCGCACATTTCGCACAATCTGTAACTCGATTTGTGTATCTGTGCGGTAAACAAACTCT AACTCAGACGCAGTCCATGGGATGCACAAAAGATGCGACAGATATTTATGAATGAATGCGGCAAC TTGTGTGCCTTCCAGATTTCCCGATTTTCCGATTCGCATCTTAATTCGAAGGGGATGGCCATATG GATCATGGAAATGGATAATGGAATGTCATGTAACCCAAGAAGCAGGCTCACTTCTCTACGCTTCG TTTATCAGTTACATTACCATGCGTATCTCTCGAATACTTACGCCTTGGCTCTTTGGCTCTTTTTA CCTGGCGCTTCTTGGGTTGGGTTTGGGTTTTCCTCGAGGACTCGC Right flanking sequence: Indices 20476127 -- 20476626 GTTCGTCTTCATCATTATTTTCATCGCAGCTCCCAGAGGAAGTTCCAATTTGCTACATCAATGAA CCATGGCCCTGATTTGCTCATCAAGTGTCTTTCCCCTCCTGTTCCCTGTTCCCAGTTCCCAGTTT CCACTTCCCAGTTCCCTGGGCTCTCATCGTCCTGCGTCCTGGGCTTGTATATTTTTTATACTTTT CATACTCCACCCCAGGACCTTGTTCGCATTTCTTTATTCCATTCGTTTGTTGTGTTGGGTGCTTT TTTTGGGCCTCTGATTTCTGACACGGCGCTGACTGTCGGCTGTCAGCAAAAATCATCTTTGGATG CGGACTAGCGAGGGGAGGCGTTAAAGTTTTCATCTACCGCACTACTACACGTAGAATAATAAGTT ATATCGGATTTTAATATACTTTATATATCATATTGATCATATATTATTAATAAATTAAATGTCAG ACTCGTCGAACCGCTTTCAATACGTTTCTGAAGTTTCAATATATT Found at i:20476835 original size:3 final size:3 Alignment explanation
Indices: 20476821--20476836 Score: 25 Period size: 3 Copynumber: 5.7 Consensus size: 3 20476811 TCTTGGGGCT 20476821 CTA CTA CT- CTA CTA CT 1 CTA CTA CTA CTA CTA CT 20476837 GCTCAAAAAG Statistics Matches: 12, Mismatches: 0, Indels: 2 0.86 0.00 0.14 Matches are distributed among these distances: 2 2 0.17 3 10 0.83 ACGTcount: A:0.25, C:0.38, G:0.00, T:0.38 Consensus pattern (3 bp): CTA Left flanking sequence: Indices 20476321 -- 20476820 TCATACTCCACCCCAGGACCTTGTTCGCATTTCTTTATTCCATTCGTTTGTTGTGTTGGGTGCTT TTTTTGGGCCTCTGATTTCTGACACGGCGCTGACTGTCGGCTGTCAGCAAAAATCATCTTTGGAT GCGGACTAGCGAGGGGAGGCGTTAAAGTTTTCATCTACCGCACTACTACACGTAGAATAATAAGT TATATCGGATTTTAATATACTTTATATATCATATTGATCATATATTATTAATAAATTAAATGTCA GACTCGTCGAACCGCTTTCAATACGTTTCTGAAGTTTCAATATATTTAAATATATTTAAGTCAAA TAAAATTTCAGATGTGCACTCATAAACTTAAACTACTTAATATGTTTTTTGTTTTCAAGCCTTTA TTAACCATTTGGCGTGGGCGTTGGTCCGTTTAAGGAAATCTGAATGATTTCGTTTCGAACTCCTC GAACGACCCTCGAAGCCTTATATCCTTGTTACATGTCTTGGGGCT Right flanking sequence: Indices 20476837 -- 20477336 GCTCAAAAAGCTGCGCCAAATTGTCTGTTTACATTAAATGCATAAATTATGCAGCATTCCATTTA CTTATTTATGTTTGTTATTTGCCCTGCGAACAATCGCTTTGATTCCGCCACTTCAGCCAAAATGC CAAATGCATAAAATATGTCAGTCGGCCATGGGAATATACATTATATACATATATTCGTAACCTAT ACACACAAACATAACATTGCTCAATTTCATTTTGTATGCATTTCACTGCTGATGATGATTTTTCA CGGATATTCATGGTTGTTGCCTGGTTTTTGCCCATTCAGATGCCCTAATGATGATGTCTCTCAGT TTTGGGTCATTTGCCGTTGGGTCGAAAACCCTCCCTTTCCGCCACTGTTTCCACTGCTTCTGGGC TTCAATTTAACCACCGCGTCTACAAATCTCGAGGAGCAACCCCCTGGAACAATAGTAAAAGTTGA CAGTTATGTGTTGATGACAATGTCGACACCGCCCAGCGAAAACCC Found at i:20478245 original size:6 final size:6 Alignment explanation
Indices: 20478229--20478251 Score: 37 Period size: 6 Copynumber: 3.7 Consensus size: 6 20478219 CACTGAAATT 20478229 AAAACG AAAAACG AAAACG AAAA 1 AAAACG -AAAACG AAAACG AAAA 20478252 ACTGCAATCC Statistics Matches: 16, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 6 10 0.62 7 6 0.38 ACGTcount: A:0.74, C:0.13, G:0.13, T:0.00 Consensus pattern (6 bp): AAAACG Left flanking sequence: Indices 20477729 -- 20478228 TTATCTGCCGGCATGATTAGCGATTCCTTTCTGTTTTCGCAGAATTTTCCAGTTACACTTTGTAG TTTAGTTTTCATGTGTGTGTTCCGCCGACTTCAAAGAGTTGCCGACTCAAAATATTTTCATTAGG CGTTAATTATGCCCGAGCCAAAATATTTTCTTTGACTCCCTGGATTCCGTGTAAACTGGGCGAAA GGACATGGCAGGACATTTGTACATCGGCGTGATTGGCATTTTTGCATTGACCACGGCACTAATGA CTGCGTTTCGTATGCATCCTTGGCTCGCTTCTTGCTTTTTTTTTTTGCCAATCATCAGGACACCA AAGGGTGGAACAGAAATAGAAACCGGCATGCCGAAAGGAAGTTGCCCGCCAAACGTAATTTATAA CCAGACGATCCGGAGGTCCTGACAATGCAACTGCAAAGTTGCAAAGCGGACTTTAAACAATTTTA GTTTCTCTTTGGGGGGAAGAGCGAACAGAAGTTGGCACTGAAATT Right flanking sequence: Indices 20478252 -- 20478751 ACTGCAATCCACCCTGTCATTAGACGGCATCAATTGTTTGGTCCCGGCGCACAAGGGACTCTATA TGCCGAAGGACCAAAGGACTCTTTTGTCCTAGAATCACACACGGAATCGAACGGGCGAACGGGGC TCGTTGACAGGGGGATATAAATGTTGTGATTTCTTAATTTTTGTTTGCATTTTTCTCGAATTTAG TAGGCTGTTGAGGTAATTACACTAATTATATGGCCCCGGGGCCGATTTTAGGGGTTGTTCCCCAT ATCCACACCCCGTGCAAGGTCATCGAGAGCTGTGTCAAACGGCACTAGACCCCGTAAATTGGATT CGCAGTCCGGGATCACTTGAGTGAGATGTTTCCATTTTAGGCTAGTGGCACATTTTCATCCATTC CAGCCATTTATACATACATATATATATAGGGAAGGTCCTCGACTAGCTTAGTGGTCGTTTCGAGG GGATTCCCAACGTGGAACTAGGCCCAACCAAATTCTTTCCCCAAA Found at i:20479295 original size:5 final size:5 Alignment explanation
Indices: 20479285--20479297 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 20479275 CTATAGTTGA 20479285 AAGAC AAGAC AAG 1 AAGAC AAGAC AAG 20479298 CCCATCAGGC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.62, C:0.15, G:0.23, T:0.00 Consensus pattern (5 bp): AAGAC Left flanking sequence: Indices 20478785 -- 20479284 TTTTACAAATTTTAATCGTGCAAGGGAATTTTCAATAATTTCTTCCTTATTATTTATCCGTATTA ATTGTTATTAAACTATTATGTTACTAATTTTTAATTTTAAATGTGTTTGCTTTTTTTCTAATTTC AAAATGATGTACATCAATTTTTTCATCGCAGTATGCCTTGATTTTTGGGCCAGTTCAACTAGTTC AATTTATTAAGCAAACTTCATTGTGTTTTTCTTCTCCAGTCGAGTAAGATCAGAAATCTTACAAA ATTACAGTCAGCTACATAGTATTTGTTTAACAATTTTGATTTCAAATTATTGCAAGTAAACGATG CAGCCCCGAAATAAATTAAGCAAGTGTTTGATCTATATAACGCCCTGTGTGCAGCAATGTAAGTT TTTCAACGATTCACTTAAGGATTTCGCGAATGGCTTGAATGCAATATTATCTTTAGCGAAAGATA ACGCAATCGAAGATTAAACGAAAGTAATACGTTTACTATAGTTGA Right flanking sequence: Indices 20479298 -- 20479797 CCCATCAGGCATTTGAATATTCCATTTTTATTGGAAATTTTTCTGCGTTTAGCAGACAAAGTTAA AATATAAGTAATATTATATTCATATGAAAACAAGAAGGAACGAAAAGAACGACATCTGGTGACAA TTTAAATTTCATACAAGAATGCATTCCACACCGTCTCAACTATGTACATATGTACATATATTTAA TTAAATGCACTTTTACAACTAGAACAAATAATTTAATAATGCGTTCTGATAGATAATGATTAGGT ATTTGGTATGATTACCCAGTTAATGGCTTATATCCACAAAAGTATTGCAGATTTAGTGAACTCAT GAAATGTTACTAAGCTGTGCAATGTTGTACGAGTATAGAACATGATTTCACTTCTTAAGTGCATT GTATTCCATTATTTATTGTTGGCTTGATACAGGCACAGAGTTTTATATATTTCACCTTTCAATCT GAAACGGTTTTCGTTTTTTTTTTTTTTCAGTGTGTTTCTATGGCA Found at i:20479772 original size:1 final size:1 Alignment explanation
Indices: 20479766--20479779 Score: 28 Period size: 1 Copynumber: 14.0 Consensus size: 1 20479756 ACGGTTTTCG 20479766 TTTTTTTTTTTTTT 1 TTTTTTTTTTTTTT 20479780 CAGTGTGTTT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 13 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 20479266 -- 20479765 ATACGTTTACTATAGTTGAAAGACAAGACAAGCCCATCAGGCATTTGAATATTCCATTTTTATTG GAAATTTTTCTGCGTTTAGCAGACAAAGTTAAAATATAAGTAATATTATATTCATATGAAAACAA GAAGGAACGAAAAGAACGACATCTGGTGACAATTTAAATTTCATACAAGAATGCATTCCACACCG TCTCAACTATGTACATATGTACATATATTTAATTAAATGCACTTTTACAACTAGAACAAATAATT TAATAATGCGTTCTGATAGATAATGATTAGGTATTTGGTATGATTACCCAGTTAATGGCTTATAT CCACAAAAGTATTGCAGATTTAGTGAACTCATGAAATGTTACTAAGCTGTGCAATGTTGTACGAG TATAGAACATGATTTCACTTCTTAAGTGCATTGTATTCCATTATTTATTGTTGGCTTGATACAGG CACAGAGTTTTATATATTTCACCTTTCAATCTGAAACGGTTTTCG Right flanking sequence: Indices 20479780 -- 20480279 CAGTGTGTTTCTATGGCACTAGGCGACATTTACTGGCCATGCAGTCCTTGTCCGCCCAAAGGAAT CGGAAGTCTGATGTCTCCGAAAAGAAGGCAGTAGAGACAACAGTCGAATGGGGGCGTGGCCCCCA AGCGGGCGACCGCCTTCCAACAGCCGTTAGTCTGCTCCGTCGAAATTCGACAGATTCCGCGAGGA ACGAGGTGAAAACCGCATTCATTCGATACGAAAAGTCTATGAACGAATTGGCCAAAAGTGCCCGA AAGCTATATAAAAATGCCCGGCTAAGGAGCTTGCCTTTGAGGAAGCCCATGATGCGAGGAAAAAT CGGTAGGAACTTAGTTTCGAAATCAGAAGAAAGCTTATGTTGATCAATCCTGTCTAATCCCTTCA GGTGACTCTGATGCAAGACCCCTAAGAACACCGGTGCCCAGTGCTTGGGCCATAACCGAGCGGGA AAATAAATAGCTGGCATAAGCAGAAGAGATGGTTTTAAGGCAAGG Found at i:20483186 original size:6 final size:6 Alignment explanation
Indices: 20483175--20483187 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 20483165 TTATTATGCG 20483175 ATCTTA ATCTTA A 1 ATCTTA ATCTTA A 20483188 ACACTGAAAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.38, C:0.15, G:0.00, T:0.46 Consensus pattern (6 bp): ATCTTA Left flanking sequence: Indices 20482675 -- 20483174 ATCGGTATTCACGTCAGAATTGGCGGGCTGATAGCCGCGGAGGCTTTTCTGCTTTCCGGATTATT AAGCCCATTACAATTGATCTGTGGTAAATAACTAATTGGCAAACAATGTAACACACCTGCTCTCT GGCCCCTATTCTGGACCTTTGCCACATTTCCTGGATTCGTGTTCGATCGTGTTCTATTTTGAATG TGGAATAGGGTTTCTCCCTCTCATTGACGTCACGATTGGTTGGAATCCTCTGGAGTGTTGGGCAC TTGGGAAGCCTGCATGCAGAAGCTACGCCCGAGCGTACCTCGAATCCTGAATTCTTCCAGGAATA TTCCGAAGCGTTGCGGCAAAGAAAAGTAACCGACTTCGCTAAACGTCGGACTTCTAAAATTAGAT ATAACATTTTCATTATTCTTAAGAGTATAAGTATATAGTTTAGTTCCATGCAAGCATGGAAGTGA GTTGTATATTAAAAATAAAATACAGTATGATTATCTTATTATGCG Right flanking sequence: Indices 20483188 -- 20483687 ACACTGAAATTATACTCTTTACCGATTGTAACGTATTCCAATTGGTGGTGTGGAAGTAGAAACTA AGGTTTAATCAAAAGTATATAACAAATATTTCTGTAATTTCTTGTCAACAAAAAAACCCATATTG TTAGGAAATTTGGTGAAAACTAAAACTCCAAGTCTTGGTGCTTTACCAACGCCCTAGACCATGTT GCCAAGTGTACAAACGCAAAGTAGATAGCTGCTTAGGATTAAGAGCAATATCTTTAGCAATATAA TATTTAGGCTTAATCAATATGTATTCTTATGAATCGAAGAACACGTTGGTGGTATATCACTGTAT CTCATATATTCAGCAGTTTCTTACATTCTCTATTGTTTCGTACTTACGCGATGTCTTTAAATCAC CAGAAAACATATTGTAGCTAAATGTAAAAACGGATTGAAAAATTTAGGTGTAACAAATTTTTGAT TTCAGAGAGGTCTGACTGATTTTGATGTTAACGAATGAGTCTAAC Found at i:20485186 original size:2 final size:2 Alignment explanation
Indices: 20485181--20485193 Score: 26 Period size: 2 Copynumber: 6.5 Consensus size: 2 20485171 TGTATATATA 20485181 TG TG TG TG TG TG T 1 TG TG TG TG TG TG T 20485194 TCAGGCAAAC Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 11 1.00 ACGTcount: A:0.00, C:0.00, G:0.46, T:0.54 Consensus pattern (2 bp): TG Left flanking sequence: Indices 20484681 -- 20485180 GTAACAAATTTTTGATTTCAGAGAGGTCTGACTGAATTTGATGTTTACGAATGAGTATAACGAAT GATAGAAAAATCAATGGCTCCTTTGACCCAAATTATACTAAATGATGGAACAAAAGGTGACTGGT TCTTTTAAGTGTTACCTAATATCAATCGTAGATCTATAAGAGCTAGAAGTTTGAGATTCAGCATA CAAATTCTAGAGACATAGACGCAGTTTAAGATTGTTGATCTATTTTACCACACCCACTCTAACGC CCTAAAACCACCCAAAACTACCACGACCACACTCTTGCAAAATGTTTTAATATTTTTTCATAATT TTATTATTCGTGTAAATTTCTATCGATTTGCGAAACAACTTTTTAACACGCCCACTCTCTAACAC CCTTAAACCACCCAAAACTGCCACGGCCACACTTTTGATCAATTTTTAAAGTTTTTCTAATTTAT ACAGATATATATATCCGTATATATATATACAGATATGTATATATA Right flanking sequence: Indices 20485194 -- 20485693 TCAGGCAAACGCGATATTTCAAAATTTTTCTGCGATATCACTATTATACATATATATACATACAT ATATATATGTATATATATAGAGATAGATATTAATAGTGATATCCCAGAAATATTATGAAATATCG CGTTTGCATGAACACTAGCTGAGTAACGGGTATCTGATAGTCGGGGATCCCGACTATAACATTCT CTATTGTTTCGTACTTACGCGATGTCTTTAAATCACCAGAAAACATATTGTAGCTGAATGTAAAA ACGGATTGAAAAATTTAGGTGTAACAAATTTTTGATTTCAGAGAGGTCTAACTGATTTTGATGTT AACGAATGAGTATAACGGATGATAGAAATGTCAATGGCTCCTTTGACCCAAATTATACTAAATGA TGGAACAAAAGGTGACTGGTTCTTTTAAGTGTTACCTAATATCAATCTATAAGAGCTAGAAGGTT GAGATTCAGCATTTGATACATTTATAGTTTTTCTCATTTCTCATA Found at i:20491713 original size:6 final size:6 Alignment explanation
Indices: 20491699--20491718 Score: 33 Period size: 6 Copynumber: 3.3 Consensus size: 6 20491689 AATGTTTATA * 20491699 ATATTT ATATGT ATATTT AT 1 ATATTT ATATTT ATATTT AT 20491719 GGAGTGTGCA Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 6 12 1.00 ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60 Consensus pattern (6 bp): ATATTT Left flanking sequence: Indices 20491199 -- 20491698 CGAAATCCTGGGCGTTGCCCCTTGCACTTTTGCGATTTTTGTTTACGAGTATTTTGAAAACACAG CCGCACCCCTTTCGCCCAGTGATCCCCGGATTCAGGATTGAGGATTCCGCACTCCTAATCCTTTG ACTTTCAGTTTGACTTTCGCTCCCAAGGATCGCCGCTAGTCCGGCTTTCCGGAAAGTGTGGCTTA CTTTGGTTCCGCTCGGCTCTACGCATCCCAAAAACTCGGCAATTAACGCGGCTGATTCGCCCGAA GTCCAGAATCCTAAATCCCGATCTCTTCTATGGGTGGGTACCGCGCAAAAGGGTTTAGTTTTAAT TAGTCGACTTTGGACGCGCCTCATCGAAATGGTCACCGAAGATTGGGAGGACGTGAGTCACGGGG GGCGGGGCGATTTGGGAAGTTTCAAAACATTCAAATCGAACGAAAATCAGTGCGCTATAATTTAG AAAAATTAATAGAAACTGGTAATAAAAGAATTAAAAATGTTTATA Right flanking sequence: Indices 20491719 -- 20492218 GGAGTGTGCAGCTGGAATAATATTAAGATTAAAGTGTTCGATATAACAAGAAGATAACACAAATG GCTAAACACTGAGAAAGTAAAATGCAGATAGAAACCATACGAATCTCTTTAGTTATAATGATCTC CTCCGTTAGTTTAATCAAATTCACAATTTCCGCCAATAAAAGCCCATAAGAACTTGGGAGAATTT CCCAAAAACTGCCGCCGCTGTCATTTAATTTGGTGATTAAGTTTTATTAAATGTTGCAACTGGCG AAGAGCGGCAAATGCCGCGTAATCCCCCTCGCCCAAAACAAAACCCCAGGACGACACACACGAAA AAAGAAGAAACCGAAGCGAAACCTCCCGACCGAGTGTCAAATTAATTAAAATGTCAGCGAAATAT GTTCAATTGTCGGCTGGTCAGATGGATGGGATCGAAATCGGATTCGGGATTGGGAATCGGGCTTA ACTTCGGCTGGCTGTCAAACAGTTTTTGCCGTAGCTGGGCATAGC Found at i:20493474 original size:3 final size:3 Alignment explanation
Indices: 20493466--20493487 Score: 37 Period size: 3 Copynumber: 7.3 Consensus size: 3 20493456 TTGCCGGCGC * 20493466 TGT TGT TGT TGG TGT TGT TGT T 1 TGT TGT TGT TGT TGT TGT TGT T 20493488 CGGTTTTGGC Statistics Matches: 17, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 3 17 1.00 ACGTcount: A:0.00, C:0.00, G:0.36, T:0.64 Consensus pattern (3 bp): TGT Left flanking sequence: Indices 20492966 -- 20493465 TTGATAGTATATAAATTCCATTTGTATTCTCCATTTTGCCTATTTAACTAAATAACCCAACTTTA CTGACCTTCAAGAATTATTTGCAACTTTTATTACTCCTTTGACAAAACGCCAAGATACAAGGAAC TCGTATCCTTTCATTGAAGAGAAGACGCTAACATTGCATGAACACAACAATTTCCGCGGAATATT CGAGTTAATTTTGAGATTCTCCCTACAGTTTCCTTACAGTTTCTTTGACACTTTCCTATTTTGCC GAGAGCGCGCAAGTCAAGGACACTTTCCCGCTAACTCTTGCCAATCCCTTCCTTCTTTGCAATCC TTCCATTTATTTTCCCTTCCTGTTTTCCGGCTAACTCCACTGCTGCTTATATAACGTTGCGTTTT GTTAAACAAACCATAAAAATTTGCAAAAAAAAAAAAGTGAAAAGAGTGGGAGGGGGTGTTCATGC CCGAGCAAATCCTTTTTTTTTGCCCTTTGTCCTTTTTGCCGGCGC Right flanking sequence: Indices 20493488 -- 20493987 CGGTTTTGGCGAAAAATGTTCAACTGTCGCGGAGTTGCGAGTTGAGTTCTGAAGTCAACAACAAT GGTAGGTATGTATGCAGGTGTGTGTTTGGTTATAGAGTGGGTGGTGAGGGCACTGAGAATAAATA CGACCACATTCCAATGAATTCCTAAATTCCTAAAGTGTTGGTCTATATTAATTAATATTTATTTG TGTAAGTCACCTTAGAGGATTTGTAGATTGTCAAAAGACGCATAGAATTTAGTATAATATACTGT TCATATTATTTGCATGTGACATTGTATAGGCAGATATTTTTTTGCAGTGCCTGAAGGAGTTGCCT TTGAGTTTGGCAATTGTTTGGTTTACTGAATGCGCCATAAAAACGTCAACGGAATTCGCAATCGC AATCACCTTTTGTGCCGCTTGAGTGTTGCCAAAACCCCACCCGCCACGAAGTTTCATCCCCATTT TCCGCCCACTTTCCATCCACCTTTGCCGCGGCTCCTTGTGAATGC Found at i:20493877 original size:6 final size:6 Alignment explanation
Indices: 20493868--20493881 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 20493858 TCAACGGAAT 20493868 TCGCAA TCGCAA TC 1 TCGCAA TCGCAA TC 20493882 ACCTTTTGTG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.29, C:0.36, G:0.14, T:0.21 Consensus pattern (6 bp): TCGCAA Left flanking sequence: Indices 20493368 -- 20493867 ATAAAAATTTGCAAAAAAAAAAAAGTGAAAAGAGTGGGAGGGGGTGTTCATGCCCGAGCAAATCC TTTTTTTTTGCCCTTTGTCCTTTTTGCCGGCGCTGTTGTTGTTGGTGTTGTTGTTCGGTTTTGGC GAAAAATGTTCAACTGTCGCGGAGTTGCGAGTTGAGTTCTGAAGTCAACAACAATGGTAGGTATG TATGCAGGTGTGTGTTTGGTTATAGAGTGGGTGGTGAGGGCACTGAGAATAAATACGACCACATT CCAATGAATTCCTAAATTCCTAAAGTGTTGGTCTATATTAATTAATATTTATTTGTGTAAGTCAC CTTAGAGGATTTGTAGATTGTCAAAAGACGCATAGAATTTAGTATAATATACTGTTCATATTATT TGCATGTGACATTGTATAGGCAGATATTTTTTTGCAGTGCCTGAAGGAGTTGCCTTTGAGTTTGG CAATTGTTTGGTTTACTGAATGCGCCATAAAAACGTCAACGGAAT Right flanking sequence: Indices 20493882 -- 20494381 ACCTTTTGTGCCGCTTGAGTGTTGCCAAAACCCCACCCGCCACGAAGTTTCATCCCCATTTTCCG CCCACTTTCCATCCACCTTTGCCGCGGCTCCTTGTGAATGCAAAATGGAATGACAGCCGGCAAGG ACGTTGCTGACAAACCCGAAACGCGAAAATGTCAGCAAACAGGGCCAAGAAAGGTTGCAAGCGGG AAATGGCGGGGACAGCGGGAAAACGTAAAGGGGGAATGGCAGTTGAGCACTTGCAGCCCCGGAAA GGATTACTTTGCAACGGGAGGCGCGAATAAATAAACAACAACCGAACACGAAACGTTTTGCATAC GGAACTCGACTTTGGGGGTAGCCCAATGTAATCATGCTAAGCATACAAACGAGCCTGGGGAAACT TGCGATGTCTGTAAGGACCCAGGCTTACCCTGTTTCAAGAACTTTTGGCAATACGATCCTAAGTA TGTTATGTTTCAGACTTATGATAAAACTAGGTGCTGGAAGGATTA Found at i:20494862 original size:6 final size:6 Alignment explanation
Indices: 20494851--20494863 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 20494841 GTGGGGAGCT 20494851 GTTTTG GTTTTG G 1 GTTTTG GTTTTG G 20494864 CCTGGAGGAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.00, G:0.38, T:0.62 Consensus pattern (6 bp): GTTTTG Left flanking sequence: Indices 20494351 -- 20494850 CTTATGATAAAACTAGGTGCTGGAAGGATTAATAACAGAACACATTGAATTAAAGTGTCACATAT GAACAAGAAAACTCACACTTAACACTTTTAAGATAATCAATAGGCATTTGTCCTAGCCCATTGTT ATAACAATTATCTTACAATTGCATAATGAAATGCATGGTATTTTTATTTGTCCATTGTCTCCGCA TTTTTTGTCATATACCCAACATACCCTACTATACCTTAGAAAACACCACAGAAATGGCAGCCCCC GTCACCTGTGACTGTGCGAAGTGCCTTATGCAATCGGTGTCCATATATTATGACACCTCCGTAAC CCAAACCCCAAACAAAGTTCAGAACCCCGACTCCAGATCCCCGATCCCAGAAACCAATCCCAACT GGAATGCCAAACAAATTACATGAACATGAGAATTTTTAGCGATTATGCGCTTTATCGGGGGAGCA CTTCGATTCCGTTTGGGGTTTATTTTCAACAGTCTGTGGGGAGCT Right flanking sequence: Indices 20494864 -- 20495363 CCTGGAGGAAGGGTCAATGCGAATGCAAAATGGCTATAAAACTTTACCTTTATGCGCCGATTTGC TTGTATTCAATAACAATTTGTTTAGACTAATCTTGAGGGTATTTTCGCAGGGATTTCCTGATTTT TTGCATTCGTTTTTGGGACAAAGATGGTAGTTTCCGTAGATTGAAATTATTTCTATCTATAGAAA TATACTGATTAAATGTCTGGCAAATTGTAATCTCGATTAAATGCTGTGTAAGTGGCAAAAAAAAA AACGTTGGGAGCGCGACTTTCGCAACTTTTGATGAAGTATTTTGTGAATTTGCACATTTGCCCCA CTTGACTACTGTCATAAATCCCTTTGTGCAAACTTTTCACGCCGTCTGGAGGAAGGACGGGTTTT CCATTTTCCGCTTTCCTTGCGCTTTGTTTACTTTTTTATAGCCCAAGTGTTGGCATTTTTGATTG TTTGCCCCGCAGATTTCTTCTTTTTGACAAATAAAATGTCAAATT Found at i:20495427 original size:6 final size:6 Alignment explanation
Indices: 20495406--20495418 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 20495396 TCGCTTCCTC 20495406 TTCTGT TTCTGT T 1 TTCTGT TTCTGT T 20495419 GTTTCTGTTG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.15, G:0.15, T:0.69 Consensus pattern (6 bp): TTCTGT Left flanking sequence: Indices 20494906 -- 20495405 TTTACCTTTATGCGCCGATTTGCTTGTATTCAATAACAATTTGTTTAGACTAATCTTGAGGGTAT TTTCGCAGGGATTTCCTGATTTTTTGCATTCGTTTTTGGGACAAAGATGGTAGTTTCCGTAGATT GAAATTATTTCTATCTATAGAAATATACTGATTAAATGTCTGGCAAATTGTAATCTCGATTAAAT GCTGTGTAAGTGGCAAAAAAAAAAACGTTGGGAGCGCGACTTTCGCAACTTTTGATGAAGTATTT TGTGAATTTGCACATTTGCCCCACTTGACTACTGTCATAAATCCCTTTGTGCAAACTTTTCACGC CGTCTGGAGGAAGGACGGGTTTTCCATTTTCCGCTTTCCTTGCGCTTTGTTTACTTTTTTATAGC CCAAGTGTTGGCATTTTTGATTGTTTGCCCCGCAGATTTCTTCTTTTTGACAAATAAAATGTCAA ATTATTAACACAACAAGAGTTACCCACATCCTTCGTCGCTTCCTC Right flanking sequence: Indices 20495419 -- 20495918 GTTTCTGTTGTTGCTGTTGTTTCTAGCCTTCCTAACGAGCAGCTCACTGTTTTTGGGGGTTAGAC TGCGAAACTCCCACCTCATTTTTTTTATGGTGTACGAAAAAATCGCGACATGTTGGCAATAAACA GCAGGTGCCGCTGGCAGGGATACTGAACAAAAAATAAAAATACAAATGCAAATAAAAAAAAAAAC ACAAAGGTATGGCAATTTCGCTGTGTCTGCTCCAGTTTCTGACCAGTTTTTAGTGTTCTATTTTT TTGGTCGAGCAGCATAAGTTCTTTATATTGTTTTTTTTCTATTTTTGGAAATTTTTATGAGGTCA GTCGAGGGGCGAGAGCCGTTCAGGGATCAATCCATCATAAAGAGGCACTATGCACCACCCGCCTC AATTAGTTCGAATCTTCGGCTCCCTCCAATCTTTTTAGGGCGAAAAAAATTCGGAAATCCTCGAC GACAGGATTTTTATTGCTCGAAAAACATGCAAAAAAGTAGGACAT Found at i:20495589 original size:6 final size:6 Alignment explanation
Indices: 20495578--20495612 Score: 42 Period size: 6 Copynumber: 5.8 Consensus size: 6 20495568 ATACTGAACA * ** * 20495578 AAAAAT AAAAAT ACAAAT GCAAAT AAAAAA AAAAA 1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA 20495613 CACAAAGGTA Statistics Matches: 24, Mismatches: 5, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 6 24 1.00 ACGTcount: A:0.80, C:0.06, G:0.03, T:0.11 Consensus pattern (6 bp): AAAAAT Left flanking sequence: Indices 20495078 -- 20495577 GCAAATTGTAATCTCGATTAAATGCTGTGTAAGTGGCAAAAAAAAAAACGTTGGGAGCGCGACTT TCGCAACTTTTGATGAAGTATTTTGTGAATTTGCACATTTGCCCCACTTGACTACTGTCATAAAT CCCTTTGTGCAAACTTTTCACGCCGTCTGGAGGAAGGACGGGTTTTCCATTTTCCGCTTTCCTTG CGCTTTGTTTACTTTTTTATAGCCCAAGTGTTGGCATTTTTGATTGTTTGCCCCGCAGATTTCTT CTTTTTGACAAATAAAATGTCAAATTATTAACACAACAAGAGTTACCCACATCCTTCGTCGCTTC CTCTTCTGTTTCTGTTGTTTCTGTTGTTGCTGTTGTTTCTAGCCTTCCTAACGAGCAGCTCACTG TTTTTGGGGGTTAGACTGCGAAACTCCCACCTCATTTTTTTTATGGTGTACGAAAAAATCGCGAC ATGTTGGCAATAAACAGCAGGTGCCGCTGGCAGGGATACTGAACA Right flanking sequence: Indices 20495613 -- 20496112 CACAAAGGTATGGCAATTTCGCTGTGTCTGCTCCAGTTTCTGACCAGTTTTTAGTGTTCTATTTT TTTGGTCGAGCAGCATAAGTTCTTTATATTGTTTTTTTTCTATTTTTGGAAATTTTTATGAGGTC AGTCGAGGGGCGAGAGCCGTTCAGGGATCAATCCATCATAAAGAGGCACTATGCACCACCCGCCT CAATTAGTTCGAATCTTCGGCTCCCTCCAATCTTTTTAGGGCGAAAAAAATTCGGAAATCCTCGA CGACAGGATTTTTATTGCTCGAAAAACATGCAAAAAAGTAGGACATCGACGCAGCAGGACGCCCG AGGGTCCTTTATGGCTGCTCTCGTTTTACGCTTCTTAGGTAATTTTTGGGCCAATTTCATGGGCC CATGAATGAAGCAGCGCAAAAAGAGAAGAAGGCCCACGGCCAGCACACAAAAAATTCCTTCTAAG AGGCGCAGAAAAAAATGCAAATTATTACGCAAGTCCTGCGGCTTC Found at i:20496448 original size:6 final size:6 Alignment explanation
Indices: 20496437--20496452 Score: 32 Period size: 6 Copynumber: 2.7 Consensus size: 6 20496427 GCCCATTGTC 20496437 CTTTGG CTTTGG CTTT 1 CTTTGG CTTTGG CTTT 20496453 TTAGCCACAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.00, C:0.19, G:0.25, T:0.56 Consensus pattern (6 bp): CTTTGG Left flanking sequence: Indices 20495937 -- 20496436 GAGGGTCCTTTATGGCTGCTCTCGTTTTACGCTTCTTAGGTAATTTTTGGGCCAATTTCATGGGC CCATGAATGAAGCAGCGCAAAAAGAGAAGAAGGCCCACGGCCAGCACACAAAAAATTCCTTCTAA GAGGCGCAGAAAAAAATGCAAATTATTACGCAAGTCCTGCGGCTTCTGGGAATTTCGCCATTTGT AGGTCAGCTCAGCAGATTTATGAGGTCCTCGCTGAGGACCTGATCTAGATCTAAATAATTTTTAT GATTCTTTTTTAACAAGCCGGCCATAAAGCAGAACAGAGGGCGAGCAGGAAAAAACTGTAGCAAA GTTGAGAATTCCTGCTCTGCTTTTCCGCATAATTGCTGCACAGGATCCCTCGTCCTTCGCTGGAA GTGATCCGCGCCTTTGTTGGTCCATAGAAAAAACGATGGCCTCACAAAAAACTGCACTAAAAATT GGTCAAAAAACTGGAGCAAGCATTTTATGGATGCGGCCCATTGTC Right flanking sequence: Indices 20496453 -- 20496952 TTAGCCACAATTTCGATCGTCCTTTGTCCACACTGATCGTCTTTTTTTTTCGCCCAGTGTCCTTC TTTCTATTTTCTGCGGTTGAGGTGTAAAAAAGTCGAGCAGTTTGTTTGAGGGTCGGTGAATTACC TTAGAAGTTCAATGGGAAAGTAATTAAAGGTTCATTGCTTTATTGGTACAACATCTTGTAAAGAT GCATAACGATAAGTAGTTCATATACTCGTAAGCCAGATATATTTGGATGTACATACTAAATAATA TAATTGGGGTAAAACGGGTTCTATTGAAATATTTAAATGTAAATATTAAATATCCGTTTGCATTG GGTTACCTTTATTAATTAAACGGCTACATTAATAGGAATACAAGTATTTGCACTGTAGCTTAAGC TTAAGTTAACTACTCTACACACCGATGATACCATTCTTGAGTCTACATAGTATTACAAATTGAAT TACAAATTAAGCCATTTTTGTCCATCATTGCCCCTTTGTGTACCA Found at i:20496845 original size:6 final size:6 Alignment explanation
Indices: 20496834--20496851 Score: 29 Period size: 6 Copynumber: 3.2 Consensus size: 6 20496824 TTTGCACTGT 20496834 AGCTTA AGCTTA AG-TTA A 1 AGCTTA AGCTTA AGCTTA A 20496852 CTACTCTACA Statistics Matches: 12, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 5 4 0.33 6 8 0.67 ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33 Consensus pattern (6 bp): AGCTTA Left flanking sequence: Indices 20496334 -- 20496833 GCGCCTTTGTTGGTCCATAGAAAAAACGATGGCCTCACAAAAAACTGCACTAAAAATTGGTCAAA AAACTGGAGCAAGCATTTTATGGATGCGGCCCATTGTCCTTTGGCTTTGGCTTTTTAGCCACAAT TTCGATCGTCCTTTGTCCACACTGATCGTCTTTTTTTTTCGCCCAGTGTCCTTCTTTCTATTTTC TGCGGTTGAGGTGTAAAAAAGTCGAGCAGTTTGTTTGAGGGTCGGTGAATTACCTTAGAAGTTCA ATGGGAAAGTAATTAAAGGTTCATTGCTTTATTGGTACAACATCTTGTAAAGATGCATAACGATA AGTAGTTCATATACTCGTAAGCCAGATATATTTGGATGTACATACTAAATAATATAATTGGGGTA AAACGGGTTCTATTGAAATATTTAAATGTAAATATTAAATATCCGTTTGCATTGGGTTACCTTTA TTAATTAAACGGCTACATTAATAGGAATACAAGTATTTGCACTGT Right flanking sequence: Indices 20496852 -- 20497351 CTACTCTACACACCGATGATACCATTCTTGAGTCTACATAGTATTACAAATTGAATTACAAATTA AGCCATTTTTGTCCATCATTGCCCCTTTGTGTACCATGTGTACATCGATTATAGACATCCTGATT TTTCGCCATAACTCTACGTTGTCATTCGTGTATACATATGTATGTATGTACATATGATTGTATTT CAGACCTCCATTGTTTGCCATTCGATTTAATGTGCGTATTTAAATCGAGACGCGAGTTAATCAAG CATTTTTGGTCAAGTTAATATTTTTTTAGCGGTTTACTCCATTGACAAACTTTTGACCCACTCGC TTCCTATCATGCCCTCTCATTCCCACTCGATATCCCCATCTCTTTCGGTGTTGACCAATAACCAA CCACGGTTAACCAGACAAAAGGCCACAAAAATGCCACGAAAATCCCAAACTAAAATTGCACACAA ACAACAGAACGGCAAACAAATGGCTTAACCCCACAGTGCCGGGCA Found at i:20497027 original size:4 final size:4 Alignment explanation
Indices: 20497018--20497031 Score: 28 Period size: 4 Copynumber: 3.5 Consensus size: 4 20497008 CGTGTATACA 20497018 TATG TATG TATG TA 1 TATG TATG TATG TA 20497032 CATATGATTG Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 10 1.00 ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50 Consensus pattern (4 bp): TATG Left flanking sequence: Indices 20496518 -- 20497017 TTTCTATTTTCTGCGGTTGAGGTGTAAAAAAGTCGAGCAGTTTGTTTGAGGGTCGGTGAATTACC TTAGAAGTTCAATGGGAAAGTAATTAAAGGTTCATTGCTTTATTGGTACAACATCTTGTAAAGAT GCATAACGATAAGTAGTTCATATACTCGTAAGCCAGATATATTTGGATGTACATACTAAATAATA TAATTGGGGTAAAACGGGTTCTATTGAAATATTTAAATGTAAATATTAAATATCCGTTTGCATTG GGTTACCTTTATTAATTAAACGGCTACATTAATAGGAATACAAGTATTTGCACTGTAGCTTAAGC TTAAGTTAACTACTCTACACACCGATGATACCATTCTTGAGTCTACATAGTATTACAAATTGAAT TACAAATTAAGCCATTTTTGTCCATCATTGCCCCTTTGTGTACCATGTGTACATCGATTATAGAC ATCCTGATTTTTCGCCATAACTCTACGTTGTCATTCGTGTATACA Right flanking sequence: Indices 20497032 -- 20497531 CATATGATTGTATTTCAGACCTCCATTGTTTGCCATTCGATTTAATGTGCGTATTTAAATCGAGA CGCGAGTTAATCAAGCATTTTTGGTCAAGTTAATATTTTTTTAGCGGTTTACTCCATTGACAAAC TTTTGACCCACTCGCTTCCTATCATGCCCTCTCATTCCCACTCGATATCCCCATCTCTTTCGGTG TTGACCAATAACCAACCACGGTTAACCAGACAAAAGGCCACAAAAATGCCACGAAAATCCCAAAC TAAAATTGCACACAAACAACAGAACGGCAAACAAATGGCTTAACCCCACAGTGCCGGGCAGGCCA AGCCCCAAGAGAGAGAGACAGCGATATAGGAGAGTGACAGAGACGGGGAGAAGAGAGAGCGTAAA AAACTGCGCAAGCTGGGCATAAAAATTCAAGGCAATTATGCATACAAGTTGACAACTTCCAGTGA GAGGGGCTGCAAGTGTGATATGGGGTGCCGGGGCTTAACCCCCCA Found at i:20497668 original size:5 final size:5 Alignment explanation
Indices: 20497658--20497670 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 20497648 AGTGACAAGT 20497658 TTTAG TTTAG TTT 1 TTTAG TTTAG TTT 20497671 TAGATTCAAT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.15, C:0.00, G:0.15, T:0.69 Consensus pattern (5 bp): TTTAG Left flanking sequence: Indices 20497158 -- 20497657 AAACTTTTGACCCACTCGCTTCCTATCATGCCCTCTCATTCCCACTCGATATCCCCATCTCTTTC GGTGTTGACCAATAACCAACCACGGTTAACCAGACAAAAGGCCACAAAAATGCCACGAAAATCCC AAACTAAAATTGCACACAAACAACAGAACGGCAAACAAATGGCTTAACCCCACAGTGCCGGGCAG GCCAAGCCCCAAGAGAGAGAGACAGCGATATAGGAGAGTGACAGAGACGGGGAGAAGAGAGAGCG TAAAAAACTGCGCAAGCTGGGCATAAAAATTCAAGGCAATTATGCATACAAGTTGACAACTTCCA GTGAGAGGGGCTGCAAGTGTGATATGGGGTGCCGGGGCTTAACCCCCCAAAACATTGCTCAAAAA TACTATAGCCTACGTTTTATACAACTAATGTAAGTTATGGTTTACATTTTCTATTCGATAATAAG TCATATTTGTATATATGTTCTTATTAACTAAGATTAGTGACAAGT Right flanking sequence: Indices 20497671 -- 20498170 TAGATTCAATTTTGCACATGAATGCCAAAAACATTTTACCAAAAGTAAGTAGTGTTCTTCGTTAG CGATTCGATCTAAAACGTATATTCAAATTTTGGTTTTTGTTTTCGGTGCACCCAAGTGTCAATAA TGGCGCTGAGAACTCTTTAATGTCGAGCGTTGCTTCCTCCTCGGTTTTATTTTTTAACCTCACAT CCCTGGCTCTGTTCCCGTCTCTCTTGCACCCGTTAACCCGTCTCTTTCCTGCGCGGAGATGCTTG AAAAGTTACGACGACTTTGGCCAGAAATACAAACCAGCAAACCGCGTTTTGATTTGCAACCCTTG GCGGGCTAAGACGGTCGACCAGAGGAAAAACCAGAAAAGTGGGTGGAAAATATGGTTTAACCCCC GCCCCGTTCGCCCACTCGTGCCATCTCGCTCTGTTCGCCCAAGCACCAAAGGGCTAAAGGACCGA AGGCCGAAGGACCTCTCTCTCTCTCTGGCAAAGCCAAAGCCAAAC Found at i:20497672 original size:6 final size:6 Alignment explanation
Indices: 20497655--20497673 Score: 31 Period size: 6 Copynumber: 3.3 Consensus size: 6 20497645 ATTAGTGACA 20497655 AGTTTT AG-TTT AGTTTT AG 1 AGTTTT AGTTTT AGTTTT AG 20497674 ATTCAATTTT Statistics Matches: 12, Mismatches: 0, Indels: 2 0.86 0.00 0.14 Matches are distributed among these distances: 5 5 0.42 6 7 0.58 ACGTcount: A:0.21, C:0.00, G:0.21, T:0.58 Consensus pattern (6 bp): AGTTTT Left flanking sequence: Indices 20497155 -- 20497654 GACAAACTTTTGACCCACTCGCTTCCTATCATGCCCTCTCATTCCCACTCGATATCCCCATCTCT TTCGGTGTTGACCAATAACCAACCACGGTTAACCAGACAAAAGGCCACAAAAATGCCACGAAAAT CCCAAACTAAAATTGCACACAAACAACAGAACGGCAAACAAATGGCTTAACCCCACAGTGCCGGG CAGGCCAAGCCCCAAGAGAGAGAGACAGCGATATAGGAGAGTGACAGAGACGGGGAGAAGAGAGA GCGTAAAAAACTGCGCAAGCTGGGCATAAAAATTCAAGGCAATTATGCATACAAGTTGACAACTT CCAGTGAGAGGGGCTGCAAGTGTGATATGGGGTGCCGGGGCTTAACCCCCCAAAACATTGCTCAA AAATACTATAGCCTACGTTTTATACAACTAATGTAAGTTATGGTTTACATTTTCTATTCGATAAT AAGTCATATTTGTATATATGTTCTTATTAACTAAGATTAGTGACA Right flanking sequence: Indices 20497674 -- 20498173 ATTCAATTTTGCACATGAATGCCAAAAACATTTTACCAAAAGTAAGTAGTGTTCTTCGTTAGCGA TTCGATCTAAAACGTATATTCAAATTTTGGTTTTTGTTTTCGGTGCACCCAAGTGTCAATAATGG CGCTGAGAACTCTTTAATGTCGAGCGTTGCTTCCTCCTCGGTTTTATTTTTTAACCTCACATCCC TGGCTCTGTTCCCGTCTCTCTTGCACCCGTTAACCCGTCTCTTTCCTGCGCGGAGATGCTTGAAA AGTTACGACGACTTTGGCCAGAAATACAAACCAGCAAACCGCGTTTTGATTTGCAACCCTTGGCG GGCTAAGACGGTCGACCAGAGGAAAAACCAGAAAAGTGGGTGGAAAATATGGTTTAACCCCCGCC CCGTTCGCCCACTCGTGCCATCTCGCTCTGTTCGCCCAAGCACCAAAGGGCTAAAGGACCGAAGG CCGAAGGACCTCTCTCTCTCTCTGGCAAAGCCAAAGCCAAACTAG Found at i:20497777 original size:6 final size:6 Alignment explanation
Indices: 20497763--20497778 Score: 25 Period size: 6 Copynumber: 2.7 Consensus size: 6 20497753 TATATTCAAA * 20497763 TTTTGG TTTTTG TTTT 1 TTTTGG TTTTGG TTTT 20497779 CGGTGCACCC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.00, C:0.00, G:0.19, T:0.81 Consensus pattern (6 bp): TTTTGG Left flanking sequence: Indices 20497263 -- 20497762 GCCACAAAAATGCCACGAAAATCCCAAACTAAAATTGCACACAAACAACAGAACGGCAAACAAAT GGCTTAACCCCACAGTGCCGGGCAGGCCAAGCCCCAAGAGAGAGAGACAGCGATATAGGAGAGTG ACAGAGACGGGGAGAAGAGAGAGCGTAAAAAACTGCGCAAGCTGGGCATAAAAATTCAAGGCAAT TATGCATACAAGTTGACAACTTCCAGTGAGAGGGGCTGCAAGTGTGATATGGGGTGCCGGGGCTT AACCCCCCAAAACATTGCTCAAAAATACTATAGCCTACGTTTTATACAACTAATGTAAGTTATGG TTTACATTTTCTATTCGATAATAAGTCATATTTGTATATATGTTCTTATTAACTAAGATTAGTGA CAAGTTTTAGTTTAGTTTTAGATTCAATTTTGCACATGAATGCCAAAAACATTTTACCAAAAGTA AGTAGTGTTCTTCGTTAGCGATTCGATCTAAAACGTATATTCAAA Right flanking sequence: Indices 20497779 -- 20498278 CGGTGCACCCAAGTGTCAATAATGGCGCTGAGAACTCTTTAATGTCGAGCGTTGCTTCCTCCTCG GTTTTATTTTTTAACCTCACATCCCTGGCTCTGTTCCCGTCTCTCTTGCACCCGTTAACCCGTCT CTTTCCTGCGCGGAGATGCTTGAAAAGTTACGACGACTTTGGCCAGAAATACAAACCAGCAAACC GCGTTTTGATTTGCAACCCTTGGCGGGCTAAGACGGTCGACCAGAGGAAAAACCAGAAAAGTGGG TGGAAAATATGGTTTAACCCCCGCCCCGTTCGCCCACTCGTGCCATCTCGCTCTGTTCGCCCAAG CACCAAAGGGCTAAAGGACCGAAGGCCGAAGGACCTCTCTCTCTCTCTGGCAAAGCCAAAGCCAA ACTAGTTTTGTGGCCGCAGCTGCCGCCGCCCTTAACCCCCGCGCGCCACCAGTGCCGGCGGAAGA CCACCCCTTTAACCCACTCGGTGTCTGGCTTTTCGGGGTGGAAAG Found at