TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_3L assembled 2004-3-14 md5checksum:58b150ba3706a94f84f5242c20c22999 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 23771897 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Warning! 300 characters in sequence are not A, C, G, or T Found at i: i:9132207 original size:3 final size:3 Alignment explanation
Indices: 9132192--9132222 Score: 55 Period size: 3 Copynumber: 10.3 Consensus size: 3 9132182 TTATATTACA * 9132192 GTT GTT GTA GTT GTT GTT GTT GTT GTT GTT G 1 GTT GTT GTT GTT GTT GTT GTT GTT GTT GTT G 9132223 GCACAGTTCG Statistics Matches: 26, Mismatches: 2, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 3 26 1.00 ACGTcount: A:0.03, C:0.00, G:0.35, T:0.61 Consensus pattern (3 bp): GTT Left flanking sequence: Indices 9131692 -- 9132191 AATTGAGAAAACGAAAGGAGGAGAAGAAATCATTGAAACGAAAAGCCTGAAGATTAGAATTGAAT CGAAAACGCAAAATCAAAACGATATATTTATATATAGTTGTTATATATAGATAAGTCATCATCGG TATTATCGTAAATATATATAGGTAAAAGTAAAGTTTGAAAGAAAATCGGTAACCGTCTACAGGTA CCTGTGGTAAGACTGATTTCCATAGCTCTTTGCCGATGACCCAAGACCTTAAATTGGGGCAGCGA AACCTCACTCGAGACACCGACCGAGTTGGGGCCTTCGTTCCATTTATAGCGGATGTCACGCATCG TGTAGCCGACTATATATGGTGTATATAGTTGGTTGTTGTTGTAGTTGTGGTTGTTGTTGTTGTTG TTGTATTCGTTGTAGGTTGTAGGTTGTAGGTTGTAGTTATGTTTGCAAGTTGCATTTTGTACAGT TTGGTGTTTAGTTTTTGGTATTTGTTTAGGCGAGTTTATATTACA Right flanking sequence: Indices 9132223 -- 9132722 GCACAGTTCGGTGGTGAGGTTGTCGTTGTTGTAGACGAAAAATATGCATAAAACAAAAAATACAT TTCGTGAGACTATTAATAAGTTCTATTCTATAATAGAAAATTTCATAAACAATTCAATACAATTC ATTCGCAGTGTGTTTTCAATTCATTTCATTTTTTTTTTTTGTTTGTCATTATTTGGTTTTTGGTC TTCCGTTTTTTGTTGAACATTTTCGATTCGGTTCGGTTGCATTAATAGTCTCATTCAGAACTTGT CGCTTTAAGTGTTGTTCAAAAATATATTTTTTGATTTATTCCATCGAGAAGAAACTCTAAGATCA TTAAAGATTGTTCGTATATTACAATTGCGCTAAAAATGCATTATAATTGTTAGATTTTCATTGGC AAAGCGTAACTATTGTATGATAAAGATTGTTGAGCTTTCAGTAGGCACGCTCTGTTCGACTTACA GCTACTGTTTGTTCTTATTGGCAGTAGTAGGGTTGCTTAAGACTA Found at i:9132380 original size:5 final size:5 Alignment explanation
Indices: 9132366--9132383 Score: 29 Period size: 5 Copynumber: 3.6 Consensus size: 5 9132356 CGCAGTGTGT * 9132366 TTTCA ATTCA TTTCA TTT 1 TTTCA TTTCA TTTCA TTT 9132384 TTTTTTTTTG Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 5 11 1.00 ACGTcount: A:0.22, C:0.17, G:0.00, T:0.61 Consensus pattern (5 bp): TTTCA Left flanking sequence: Indices 9131866 -- 9132365 ATCGGTAACCGTCTACAGGTACCTGTGGTAAGACTGATTTCCATAGCTCTTTGCCGATGACCCAA GACCTTAAATTGGGGCAGCGAAACCTCACTCGAGACACCGACCGAGTTGGGGCCTTCGTTCCATT TATAGCGGATGTCACGCATCGTGTAGCCGACTATATATGGTGTATATAGTTGGTTGTTGTTGTAG TTGTGGTTGTTGTTGTTGTTGTTGTATTCGTTGTAGGTTGTAGGTTGTAGGTTGTAGTTATGTTT GCAAGTTGCATTTTGTACAGTTTGGTGTTTAGTTTTTGGTATTTGTTTAGGCGAGTTTATATTAC AGTTGTTGTAGTTGTTGTTGTTGTTGTTGTTGGCACAGTTCGGTGGTGAGGTTGTCGTTGTTGTA GACGAAAAATATGCATAAAACAAAAAATACATTTCGTGAGACTATTAATAAGTTCTATTCTATAA TAGAAAATTTCATAAACAATTCAATACAATTCATTCGCAGTGTGT Right flanking sequence: Indices 9132384 -- 9132883 TTTTTTTTTGTTTGTCATTATTTGGTTTTTGGTCTTCCGTTTTTTGTTGAACATTTTCGATTCGG TTCGGTTGCATTAATAGTCTCATTCAGAACTTGTCGCTTTAAGTGTTGTTCAAAAATATATTTTT TGATTTATTCCATCGAGAAGAAACTCTAAGATCATTAAAGATTGTTCGTATATTACAATTGCGCT AAAAATGCATTATAATTGTTAGATTTTCATTGGCAAAGCGTAACTATTGTATGATAAAGATTGTT GAGCTTTCAGTAGGCACGCTCTGTTCGACTTACAGCTACTGTTTGTTCTTATTGGCAGTAGTAGG GTTGCTTAAGACTAAAAAACTTATAGCTTAGCATATCTAATTGTTTCGGTGTCAGAAATGGGTGC TCTTGTGTCTTCTGTTTTTAAGTCTAAGGCTTTTACATTGTTTTCAGGCCTTTACTTAAGTTGTT TCTTAGCTTTTATTTGCGTTTTAGTTGCTTTTGCCTACCCAAGCA Found at i:9132387 original size:1 final size:1 Alignment explanation
Indices: 9132381--9132396 Score: 25 Period size: 1 Copynumber: 16.0 Consensus size: 1 9132371 ATTCATTTCA * 9132381 TTTTTTTTTTTTGTTT 1 TTTTTTTTTTTTTTTT 9132397 GTCATTATTT Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 1 13 1.00 ACGTcount: A:0.00, C:0.00, G:0.06, T:0.94 Consensus pattern (1 bp): T Left flanking sequence: Indices 9131881 -- 9132380 CAGGTACCTGTGGTAAGACTGATTTCCATAGCTCTTTGCCGATGACCCAAGACCTTAAATTGGGG CAGCGAAACCTCACTCGAGACACCGACCGAGTTGGGGCCTTCGTTCCATTTATAGCGGATGTCAC GCATCGTGTAGCCGACTATATATGGTGTATATAGTTGGTTGTTGTTGTAGTTGTGGTTGTTGTTG TTGTTGTTGTATTCGTTGTAGGTTGTAGGTTGTAGGTTGTAGTTATGTTTGCAAGTTGCATTTTG TACAGTTTGGTGTTTAGTTTTTGGTATTTGTTTAGGCGAGTTTATATTACAGTTGTTGTAGTTGT TGTTGTTGTTGTTGTTGGCACAGTTCGGTGGTGAGGTTGTCGTTGTTGTAGACGAAAAATATGCA TAAAACAAAAAATACATTTCGTGAGACTATTAATAAGTTCTATTCTATAATAGAAAATTTCATAA ACAATTCAATACAATTCATTCGCAGTGTGTTTTCAATTCATTTCA Right flanking sequence: Indices 9132397 -- 9132896 GTCATTATTTGGTTTTTGGTCTTCCGTTTTTTGTTGAACATTTTCGATTCGGTTCGGTTGCATTA ATAGTCTCATTCAGAACTTGTCGCTTTAAGTGTTGTTCAAAAATATATTTTTTGATTTATTCCAT CGAGAAGAAACTCTAAGATCATTAAAGATTGTTCGTATATTACAATTGCGCTAAAAATGCATTAT AATTGTTAGATTTTCATTGGCAAAGCGTAACTATTGTATGATAAAGATTGTTGAGCTTTCAGTAG GCACGCTCTGTTCGACTTACAGCTACTGTTTGTTCTTATTGGCAGTAGTAGGGTTGCTTAAGACT AAAAAACTTATAGCTTAGCATATCTAATTGTTTCGGTGTCAGAAATGGGTGCTCTTGTGTCTTCT GTTTTTAAGTCTAAGGCTTTTACATTGTTTTCAGGCCTTTACTTAAGTTGTTTCTTAGCTTTTAT TTGCGTTTTAGTTGCTTTTGCCTACCCAAGCAAACGAAACTGGAC Found at i:9132452 original size:5 final size:5 Alignment explanation
Indices: 9132439--9132455 Score: 27 Period size: 5 Copynumber: 3.4 Consensus size: 5 9132429 GTTGAACATT * 9132439 TTCGA TTCGG TTCGG TT 1 TTCGG TTCGG TTCGG TT 9132456 GCATTAATAG Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 5 11 1.00 ACGTcount: A:0.06, C:0.18, G:0.29, T:0.47 Consensus pattern (5 bp): TTCGG Left flanking sequence: Indices 9131939 -- 9132438 ATTGGGGCAGCGAAACCTCACTCGAGACACCGACCGAGTTGGGGCCTTCGTTCCATTTATAGCGG ATGTCACGCATCGTGTAGCCGACTATATATGGTGTATATAGTTGGTTGTTGTTGTAGTTGTGGTT GTTGTTGTTGTTGTTGTATTCGTTGTAGGTTGTAGGTTGTAGGTTGTAGTTATGTTTGCAAGTTG CATTTTGTACAGTTTGGTGTTTAGTTTTTGGTATTTGTTTAGGCGAGTTTATATTACAGTTGTTG TAGTTGTTGTTGTTGTTGTTGTTGGCACAGTTCGGTGGTGAGGTTGTCGTTGTTGTAGACGAAAA ATATGCATAAAACAAAAAATACATTTCGTGAGACTATTAATAAGTTCTATTCTATAATAGAAAAT TTCATAAACAATTCAATACAATTCATTCGCAGTGTGTTTTCAATTCATTTCATTTTTTTTTTTTG TTTGTCATTATTTGGTTTTTGGTCTTCCGTTTTTTGTTGAACATT Right flanking sequence: Indices 9132456 -- 9132955 GCATTAATAGTCTCATTCAGAACTTGTCGCTTTAAGTGTTGTTCAAAAATATATTTTTTGATTTA TTCCATCGAGAAGAAACTCTAAGATCATTAAAGATTGTTCGTATATTACAATTGCGCTAAAAATG CATTATAATTGTTAGATTTTCATTGGCAAAGCGTAACTATTGTATGATAAAGATTGTTGAGCTTT CAGTAGGCACGCTCTGTTCGACTTACAGCTACTGTTTGTTCTTATTGGCAGTAGTAGGGTTGCTT AAGACTAAAAAACTTATAGCTTAGCATATCTAATTGTTTCGGTGTCAGAAATGGGTGCTCTTGTG TCTTCTGTTTTTAAGTCTAAGGCTTTTACATTGTTTTCAGGCCTTTACTTAAGTTGTTTCTTAGC TTTTATTTGCGTTTTAGTTGCTTTTGCCTACCCAAGCAAACGAAACTGGACTCTCTTGCGACTCG AAACGAACTGAAAGGGAAACGGAAACGGAAATGGGGAACCAGAAA Found at i:9132934 original size:6 final size:6 Alignment explanation
Indices: 9132916--9132941 Score: 38 Period size: 6 Copynumber: 4.3 Consensus size: 6 9132906 ACTCGAAACG * * 9132916 AACTGA AAGGGA AACGGA AACGGA AA 1 AACGGA AACGGA AACGGA AACGGA AA 9132942 TGGGGAACCA Statistics Matches: 17, Mismatches: 3, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 6 17 1.00 ACGTcount: A:0.54, C:0.12, G:0.31, T:0.04 Consensus pattern (6 bp): AACGGA Left flanking sequence: Indices 9132416 -- 9132915 TCTTCCGTTTTTTGTTGAACATTTTCGATTCGGTTCGGTTGCATTAATAGTCTCATTCAGAACTT GTCGCTTTAAGTGTTGTTCAAAAATATATTTTTTGATTTATTCCATCGAGAAGAAACTCTAAGAT CATTAAAGATTGTTCGTATATTACAATTGCGCTAAAAATGCATTATAATTGTTAGATTTTCATTG GCAAAGCGTAACTATTGTATGATAAAGATTGTTGAGCTTTCAGTAGGCACGCTCTGTTCGACTTA CAGCTACTGTTTGTTCTTATTGGCAGTAGTAGGGTTGCTTAAGACTAAAAAACTTATAGCTTAGC ATATCTAATTGTTTCGGTGTCAGAAATGGGTGCTCTTGTGTCTTCTGTTTTTAAGTCTAAGGCTT TTACATTGTTTTCAGGCCTTTACTTAAGTTGTTTCTTAGCTTTTATTTGCGTTTTAGTTGCTTTT GCCTACCCAAGCAAACGAAACTGGACTCTCTTGCGACTCGAAACG Right flanking sequence: Indices 9132942 -- 9133441 TGGGGAACCAGAAATCATAACTGCTGGGCCTAGCTAACGCTCACTACGTCACTAACTGCTGCTTT ACTGATCGGTTAATCAAACGAATAAAACGTATAAGCAAAATAATATATGAATAGAGAATAAACAA CAAATCAACGAGTAGTCACAACAGTGGTTAGTAGTGGACACTTCAAACGAAATATTTATATATTT ATGTTTATATGTGGTTTAGATGGGAGGTTGGTTCGATTGTTTCTGGTTAGTAGCACAAGTTACAG TTAGCACTCGATAAATAGAGATATAGTTAATTATATATTTATTGGTGAAGGAACGGTAGAAGTAG ACGGAAATAAAATAAAAAACTTCAATTGGTTAGAGGTGCGTGTTTCGGTACTTGGATATGCGCTA ACCCGTTTATCGGAAACACAAAATCAAAATACGATTACGAAAATCCATTACGACAAACGCAAAAC GGATAAAAGTTCATTGAAAAATGCTTGTCAAAAACAAAGGAAATG Found at i:9133143 original size:6 final size:6 Alignment explanation
Indices: 9133130--9133146 Score: 27 Period size: 6 Copynumber: 2.8 Consensus size: 6 9133120 GAAATATTTA * 9133130 TATATT TATGTT TATAT 1 TATATT TATATT TATAT 9133147 GTGGTTTAGA Statistics Matches: 9, Mismatches: 2, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65 Consensus pattern (6 bp): TATATT Left flanking sequence: Indices 9132630 -- 9133129 TGATAAAGATTGTTGAGCTTTCAGTAGGCACGCTCTGTTCGACTTACAGCTACTGTTTGTTCTTA TTGGCAGTAGTAGGGTTGCTTAAGACTAAAAAACTTATAGCTTAGCATATCTAATTGTTTCGGTG TCAGAAATGGGTGCTCTTGTGTCTTCTGTTTTTAAGTCTAAGGCTTTTACATTGTTTTCAGGCCT TTACTTAAGTTGTTTCTTAGCTTTTATTTGCGTTTTAGTTGCTTTTGCCTACCCAAGCAAACGAA ACTGGACTCTCTTGCGACTCGAAACGAACTGAAAGGGAAACGGAAACGGAAATGGGGAACCAGAA ATCATAACTGCTGGGCCTAGCTAACGCTCACTACGTCACTAACTGCTGCTTTACTGATCGGTTAA TCAAACGAATAAAACGTATAAGCAAAATAATATATGAATAGAGAATAAACAACAAATCAACGAGT AGTCACAACAGTGGTTAGTAGTGGACACTTCAAACGAAATATTTA Right flanking sequence: Indices 9133147 -- 9133646 GTGGTTTAGATGGGAGGTTGGTTCGATTGTTTCTGGTTAGTAGCACAAGTTACAGTTAGCACTCG ATAAATAGAGATATAGTTAATTATATATTTATTGGTGAAGGAACGGTAGAAGTAGACGGAAATAA AATAAAAAACTTCAATTGGTTAGAGGTGCGTGTTTCGGTACTTGGATATGCGCTAACCCGTTTAT CGGAAACACAAAATCAAAATACGATTACGAAAATCCATTACGACAAACGCAAAACGGATAAAAGT TCATTGAAAAATGCTTGTCAAAAACAAAGGAAATGGTAATGTGATTATATTCATGTTTTTTTTTT TTTTTTTTTTTTTTGCATATATATACGTTTATATATATACATAGATTTTTACGATTTGGTATGAT TTTTGAATGTATGGGGGTACCTGTGGTTAGGTTTATTTCGGTCGCCCTCTGCCTGTGTCCCAAAA CTCGGAACTGCGGTAGTTCGACCTCACTGCTCATGCCAACACTAC Found at i:9133284 original size:6 final size:5 Alignment explanation
Indices: 9133271--9133283 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 9133261 AAGTAGACGG 9133271 AAATA AAATA AAA 1 AAATA AAATA AAA 9133284 AACTTCAATT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15 Consensus pattern (5 bp): AAATA Left flanking sequence: Indices 9132771 -- 9133270 TGCTCTTGTGTCTTCTGTTTTTAAGTCTAAGGCTTTTACATTGTTTTCAGGCCTTTACTTAAGTT GTTTCTTAGCTTTTATTTGCGTTTTAGTTGCTTTTGCCTACCCAAGCAAACGAAACTGGACTCTC TTGCGACTCGAAACGAACTGAAAGGGAAACGGAAACGGAAATGGGGAACCAGAAATCATAACTGC TGGGCCTAGCTAACGCTCACTACGTCACTAACTGCTGCTTTACTGATCGGTTAATCAAACGAATA AAACGTATAAGCAAAATAATATATGAATAGAGAATAAACAACAAATCAACGAGTAGTCACAACAG TGGTTAGTAGTGGACACTTCAAACGAAATATTTATATATTTATGTTTATATGTGGTTTAGATGGG AGGTTGGTTCGATTGTTTCTGGTTAGTAGCACAAGTTACAGTTAGCACTCGATAAATAGAGATAT AGTTAATTATATATTTATTGGTGAAGGAACGGTAGAAGTAGACGG Right flanking sequence: Indices 9133284 -- 9133783 AACTTCAATTGGTTAGAGGTGCGTGTTTCGGTACTTGGATATGCGCTAACCCGTTTATCGGAAAC ACAAAATCAAAATACGATTACGAAAATCCATTACGACAAACGCAAAACGGATAAAAGTTCATTGA AAAATGCTTGTCAAAAACAAAGGAAATGGTAATGTGATTATATTCATGTTTTTTTTTTTTTTTTT TTTTTTTGCATATATATACGTTTATATATATACATAGATTTTTACGATTTGGTATGATTTTTGAA TGTATGGGGGTACCTGTGGTTAGGTTTATTTCGGTCGCCCTCTGCCTGTGTCCCAAAACTCGGAA CTGCGGTAGTTCGACCTCACTGCTCATGCCAACACTACTCAGTCCATCTCTCCAGAAATATCGGA TATCTCGCATCGTGTAACCGACTGCATGTTGTTGAAGAACATTGTTGTTGGATTGTTGTAGTTGT TGAGTTGTAGTTGTAGTAGTTGTTGTTGTTGCAAAAAGGGGGTTC Found at i:9133468 original size:1 final size:1 Alignment explanation
Indices: 9133462--9133485 Score: 48 Period size: 1 Copynumber: 24.0 Consensus size: 1 9133452 TATATTCATG 9133462 TTTTTTTTTTTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTTTTTTTTT 9133486 GCATATATAT Statistics Matches: 23, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 23 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 9132962 -- 9133461 CTGCTGGGCCTAGCTAACGCTCACTACGTCACTAACTGCTGCTTTACTGATCGGTTAATCAAACG AATAAAACGTATAAGCAAAATAATATATGAATAGAGAATAAACAACAAATCAACGAGTAGTCACA ACAGTGGTTAGTAGTGGACACTTCAAACGAAATATTTATATATTTATGTTTATATGTGGTTTAGA TGGGAGGTTGGTTCGATTGTTTCTGGTTAGTAGCACAAGTTACAGTTAGCACTCGATAAATAGAG ATATAGTTAATTATATATTTATTGGTGAAGGAACGGTAGAAGTAGACGGAAATAAAATAAAAAAC TTCAATTGGTTAGAGGTGCGTGTTTCGGTACTTGGATATGCGCTAACCCGTTTATCGGAAACACA AAATCAAAATACGATTACGAAAATCCATTACGACAAACGCAAAACGGATAAAAGTTCATTGAAAA ATGCTTGTCAAAAACAAAGGAAATGGTAATGTGATTATATTCATG Right flanking sequence: Indices 9133486 -- 9133985 GCATATATATACGTTTATATATATACATAGATTTTTACGATTTGGTATGATTTTTGAATGTATGG GGGTACCTGTGGTTAGGTTTATTTCGGTCGCCCTCTGCCTGTGTCCCAAAACTCGGAACTGCGGT AGTTCGACCTCACTGCTCATGCCAACACTACTCAGTCCATCTCTCCAGAAATATCGGATATCTCG CATCGTGTAACCGACTGCATGTTGTTGAAGAACATTGTTGTTGGATTGTTGTAGTTGTTGAGTTG TAGTTGTAGTAGTTGTTGTTGTTGCAAAAAGGGGGTTCAGTTGTTAATTAATTGATGTTATTGTT TGTTTGTTCTGTTTTGGTTTTTGGTGTTGGATGGTTTCTGGGACTTATACACAGAATACTTAACT CACACACTCGATTTTGATTCGGAATAAAGAGAGTCTTATAAATAGGATGAGTGTGGGTGTGGCAT AACTCGAAACCGATTTCTGTGGCGAGTTTTGACAAAGAAATTCAT Found at i:9133813 original size:4 final size:4 Alignment explanation
Indices: 9133806--9133824 Score: 29 Period size: 4 Copynumber: 4.5 Consensus size: 4 9133796 ATTGATGTTA 9133806 TTGT TTGT TTGT TCTGT TT 1 TTGT TTGT TTGT T-TGT TT 9133825 TGGTTTTTGG Statistics Matches: 14, Mismatches: 0, Indels: 2 0.88 0.00 0.12 Matches are distributed among these distances: 4 10 0.71 5 4 0.29 ACGTcount: A:0.00, C:0.05, G:0.21, T:0.74 Consensus pattern (4 bp): TTGT Left flanking sequence: Indices 9133306 -- 9133805 GTGTTTCGGTACTTGGATATGCGCTAACCCGTTTATCGGAAACACAAAATCAAAATACGATTACG AAAATCCATTACGACAAACGCAAAACGGATAAAAGTTCATTGAAAAATGCTTGTCAAAAACAAAG GAAATGGTAATGTGATTATATTCATGTTTTTTTTTTTTTTTTTTTTTTTTGCATATATATACGTT TATATATATACATAGATTTTTACGATTTGGTATGATTTTTGAATGTATGGGGGTACCTGTGGTTA GGTTTATTTCGGTCGCCCTCTGCCTGTGTCCCAAAACTCGGAACTGCGGTAGTTCGACCTCACTG CTCATGCCAACACTACTCAGTCCATCTCTCCAGAAATATCGGATATCTCGCATCGTGTAACCGAC TGCATGTTGTTGAAGAACATTGTTGTTGGATTGTTGTAGTTGTTGAGTTGTAGTTGTAGTAGTTG TTGTTGTTGCAAAAAGGGGGTTCAGTTGTTAATTAATTGATGTTA Right flanking sequence: Indices 9133825 -- 9134324 TGGTTTTTGGTGTTGGATGGTTTCTGGGACTTATACACAGAATACTTAACTCACACACTCGATTT TGATTCGGAATAAAGAGAGTCTTATAAATAGGATGAGTGTGGGTGTGGCATAACTCGAAACCGAT TTCTGTGGCGAGTTTTGACAAAGAAATTCATATCGAACGTATATACAATAGTTAGATCTTAAGCA AAAGCGTGCTGTGTATGGGTTTTTGACTTACAGTACATGTAGTATAATAAACTTAGGATTACAGG GGCGCTTAAAGGGCATAATTCGAGTTAAAGACAGAGGCAAAAAAGATGTTCTCGTTTTCGGTTTC ACAAAGAATCATCGGATATTATTCATGGGCTGGAACCTTCTGCGGTTGCTGAAATTGAGAAGGCG ACCGAAAACCAACCAATCTTCTGCATGATTTTAGCGCCATGATATTGTGAACTGTGGATAGTGAT ATTTAATAGTTACTGTTTTGCTGGTTGATAGCTGTTGGGTAGAAC Found at i:9134777 original size:6 final size:6 Alignment explanation
Indices: 9134759--9134778 Score: 26 Period size: 6 Copynumber: 3.5 Consensus size: 6 9134749 CGTGTAATTG * 9134759 TGTATG TGT-TC TGTATC TGT 1 TGTATC TGTATC TGTATC TGT 9134779 GGCACTTAAA Statistics Matches: 12, Mismatches: 1, Indels: 2 0.80 0.07 0.13 Matches are distributed among these distances: 5 4 0.33 6 8 0.67 ACGTcount: A:0.10, C:0.10, G:0.25, T:0.55 Consensus pattern (6 bp): TGTATC Left flanking sequence: Indices 9134259 -- 9134758 TTGTGAACTGTGGATAGTGATATTTAATAGTTACTGTTTTGCTGGTTGATAGCTGTTGGGTAGAA CATTCGGGTAGATGCAGATAATAATGCACATGAACTGGGTTTGCATGTGACACTTGAACTTTTAT TCTTCGGTGGTTTCAAAAAACAAACATAAATGACCAAAAAGTATCTGAGGTGGGGTGGGGCAAGA ACTATTTGAGTAATTGCATGAGTTGGTTCGTTGGTGGGGCGTCGGGGACAATTTTGTTTGAACAA AATATGCACAATGAACTGAAAATAGATATTCGAACGTAAAATCAAATCTATTGAGAGCTAGGATT TAAATGAAACTCCTTGGCGCCTAATCTCTGTCTAAAGACAATTAAATTGACGTAAATTCAAATCG ATTTCCTGCTATTTGTGGCAACATAATTGCTCTGTTCACAATTGTTCGTATCAAAAGGCGACTTA ATTGCTTTTTCCTTCTCAATCGAATTTGTTTCGGTCGTGTAATTG Right flanking sequence: Indices 9134779 -- 9135278 GGCACTTAAAATTTACTTGCTTGCATTTCAATTGTTTCGGTTTGGTTTCTTTCACATAAGCTTGT TTTCGATTTTCTGCCCACACCGAACAAACAGCGCACGGCCTTTGCTTGAGAGTTGAGCTCGGCAT TTTTGGAGTGGCCAAAACTGAGTGCAGATGGTGGCTAAAAGGTGCAGGCTACTGGCTAAAATAAC AGGTAATTGCAAAGCTCTCGACAACACTGAACAATTGCGCAATTTTCTGGGCCAAAAATCACTTC ATTTTGGCCACTCCCCTGCCGACATTCTGAATGAGTTAGTTTCTTGTTCACATTTTGATTATTTC TGTTTCATATGGTTCATTGACAATTTTCACAGTTTAATCATCATCATTTCTTGTCGTTTATTACA TGGCTTAAAAAATTCATCAGTAATTCAGATCAATGTACTTACAGCTTTCGATTTCAATGTGGCAC AGCTGGCGATCCATGGGGAAATATTGTAGATTCATCGGACACGAT Found at i:9135319 original size:1 final size:1 Alignment explanation
Indices: 9135313--9135326 Score: 28 Period size: 1 Copynumber: 14.0 Consensus size: 1 9135303 TTATTTGACA 9135313 TTTTTTTTTTTTTT 1 TTTTTTTTTTTTTT 9135327 GTTGGATGGG Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 13 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 9134813 -- 9135312 TTTCGGTTTGGTTTCTTTCACATAAGCTTGTTTTCGATTTTCTGCCCACACCGAACAAACAGCGC ACGGCCTTTGCTTGAGAGTTGAGCTCGGCATTTTTGGAGTGGCCAAAACTGAGTGCAGATGGTGG CTAAAAGGTGCAGGCTACTGGCTAAAATAACAGGTAATTGCAAAGCTCTCGACAACACTGAACAA TTGCGCAATTTTCTGGGCCAAAAATCACTTCATTTTGGCCACTCCCCTGCCGACATTCTGAATGA GTTAGTTTCTTGTTCACATTTTGATTATTTCTGTTTCATATGGTTCATTGACAATTTTCACAGTT TAATCATCATCATTTCTTGTCGTTTATTACATGGCTTAAAAAATTCATCAGTAATTCAGATCAAT GTACTTACAGCTTTCGATTTCAATGTGGCACAGCTGGCGATCCATGGGGAAATATTGTAGATTCA TCGGACACGATGCGGTTATAGTCAATCTAAGTGGATTATTTGACA Right flanking sequence: Indices 9135327 -- 9135826 GTTGGATGGGTTTTGGGGGAAAGAGAGATTATACGATTAGTAGCGAATTCATGGGTAACCAGGTG TACATCAACAAACAAACGAGCAGAGGGTTTCAAAAAAATTACATACTATTTTATATACACACAAC ATTTACGAGGTTCTGGGGACTGAGGGTATTCAAGTCATTACATACAGAGCGAGTTCAATTGGATA TGAGCTATTTGTTATATATATTTTTGCTGCTGTTTTTTTTTTATTTTGGTAAGTGAGAGATACTT TGAGTGGCAGTTTAGTTATAGATAGTGAGGCGATTGGCTCTTACGCAGGGTTTAACATTAATTGG CTTACTTAGTTGTCGTTGGTTTAGTTGCTTAGAGTTGCTTAGAGCTACGAAAACTAAACGCTACT CATACTTATTTTGTGGCTTGTTGCTTGGTCTTTTTTTTTTTTTTTTTTTTGGATGGCTTCTGGGG TTTTGTGGCGATTTTGGACAGATTCTTGTTTAAAGGTAGTAGAAA Found at i:9135753 original size:1 final size:1 Alignment explanation
Indices: 9135747--9135766 Score: 40 Period size: 1 Copynumber: 20.0 Consensus size: 1 9135737 TTGCTTGGTC 9135747 TTTTTTTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTTTTT 9135767 GGATGGCTTC Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 19 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 9135247 -- 9135746 TGGGGAAATATTGTAGATTCATCGGACACGATGCGGTTATAGTCAATCTAAGTGGATTATTTGAC ATTTTTTTTTTTTTTGTTGGATGGGTTTTGGGGGAAAGAGAGATTATACGATTAGTAGCGAATTC ATGGGTAACCAGGTGTACATCAACAAACAAACGAGCAGAGGGTTTCAAAAAAATTACATACTATT TTATATACACACAACATTTACGAGGTTCTGGGGACTGAGGGTATTCAAGTCATTACATACAGAGC GAGTTCAATTGGATATGAGCTATTTGTTATATATATTTTTGCTGCTGTTTTTTTTTTATTTTGGT AAGTGAGAGATACTTTGAGTGGCAGTTTAGTTATAGATAGTGAGGCGATTGGCTCTTACGCAGGG TTTAACATTAATTGGCTTACTTAGTTGTCGTTGGTTTAGTTGCTTAGAGTTGCTTAGAGCTACGA AAACTAAACGCTACTCATACTTATTTTGTGGCTTGTTGCTTGGTC Right flanking sequence: Indices 9135767 -- 9136266 GGATGGCTTCTGGGGTTTTGTGGCGATTTTGGACAGATTCTTGTTTAAAGGTAGTAGAAAAATGA GAGCCCAGTAGCCGAGCTACTGCGGCCAGTCAAACCTTTTTGCGGTGTCAAAAACACGTGAGACA AAAGAAGGTACCGTCGATAGTCATGCAATCCCTGGATTTCGATGGTTGTCGTCTAACGATTCTCG ATCTTGATTCTTGTGATTGTTATGGGGGAAATGCGTTTGTATCTTTCATGAGCCACACAATTGGG GATGTCGAAGTGATGGATAGTATAGTTCCATTCTATCGATGTTATGAAATGATTTATGTTTTCAT CAGCCAATTGAGTACAATTATGGCCAGATGCATTTTTGGAACCATCACATAAATTAAAACTTAAA ATAGAATTTCAAAACGATTTCCAGATAAAAATCGATCAAATCGATAGTATCGAGAGTACAATCGC ACAGTTTGCACCTCTAACCGATGACTTTCATGAAATGTACAAATC Found at i:9136313 original size:6 final size:6 Alignment explanation
Indices: 9136302--9136316 Score: 30 Period size: 6 Copynumber: 2.5 Consensus size: 6 9136292 TGCCAACTTT 9136302 CTTTCA CTTTCA CTT 1 CTTTCA CTTTCA CTT 9136317 GCCAATTGAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.13, C:0.33, G:0.00, T:0.53 Consensus pattern (6 bp): CTTTCA Left flanking sequence: Indices 9135802 -- 9136301 GATTCTTGTTTAAAGGTAGTAGAAAAATGAGAGCCCAGTAGCCGAGCTACTGCGGCCAGTCAAAC CTTTTTGCGGTGTCAAAAACACGTGAGACAAAAGAAGGTACCGTCGATAGTCATGCAATCCCTGG ATTTCGATGGTTGTCGTCTAACGATTCTCGATCTTGATTCTTGTGATTGTTATGGGGGAAATGCG TTTGTATCTTTCATGAGCCACACAATTGGGGATGTCGAAGTGATGGATAGTATAGTTCCATTCTA TCGATGTTATGAAATGATTTATGTTTTCATCAGCCAATTGAGTACAATTATGGCCAGATGCATTT TTGGAACCATCACATAAATTAAAACTTAAAATAGAATTTCAAAACGATTTCCAGATAAAAATCGA TCAAATCGATAGTATCGAGAGTACAATCGCACAGTTTGCACCTCTAACCGATGACTTTCATGAAA TGTACAAATCATTAAGAGCTGCTTCGCTCGAAATGTGCCAACTTT Right flanking sequence: Indices 9136317 -- 9136816 GCCAATTGAACTCACTTGATTAGTCTTAATCGCTTGGAAGAAAACTGTTTTTCGTTCTGTAGAAA TTTTCCATTTTCAATTCGATTTAGTAAATTACAACATCGATTTATACACACACAGAAAAAAAGAG TTAGTTGCAAAAAGGGCCAAAAACGATAATTTTAACGATAGATTAGAATGTTTGAAGTATTTTTT TTTTTTTGTTTGTTTGGGGTTAGTTTTTCGGTTTTGTTTTGTTTTGGTTTTTTTTGTTTGGATGT AGGGTTAGTTGTAAAATAATTAAATACACATACACATATACAGACAATTAAAAATGTTAATGTTC GCTTTCATTGAGAAAGTAGAGTTTGAAGTTGCAGTAGTTGAGGTGGTTTTTACCTAATACTTCTT GTTATCGATCCAGAATGATGCACACGTATGAATTCATTACTGGTTGTTGCAATGTGAAAATATGA TTGTTTTTCATTTACAAAAAAGGTGTCAGGTACCCAAATATTCTT Found at i:9136512 original size:1 final size:1 Alignment explanation
Indices: 9136506--9136526 Score: 28 Period size: 1 Copynumber: 21.0 Consensus size: 1 9136496 GTTTGAAGTA * * 9136506 TTTTTTTTTTTTTGTTTGTTT 1 TTTTTTTTTTTTTTTTTTTTT 9136527 GGGGTTAGTT Statistics Matches: 16, Mismatches: 4, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 1 16 1.00 ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90 Consensus pattern (1 bp): T Left flanking sequence: Indices 9136006 -- 9136505 TTCATGAGCCACACAATTGGGGATGTCGAAGTGATGGATAGTATAGTTCCATTCTATCGATGTTA TGAAATGATTTATGTTTTCATCAGCCAATTGAGTACAATTATGGCCAGATGCATTTTTGGAACCA TCACATAAATTAAAACTTAAAATAGAATTTCAAAACGATTTCCAGATAAAAATCGATCAAATCGA TAGTATCGAGAGTACAATCGCACAGTTTGCACCTCTAACCGATGACTTTCATGAAATGTACAAAT CATTAAGAGCTGCTTCGCTCGAAATGTGCCAACTTTCTTTCACTTTCACTTGCCAATTGAACTCA CTTGATTAGTCTTAATCGCTTGGAAGAAAACTGTTTTTCGTTCTGTAGAAATTTTCCATTTTCAA TTCGATTTAGTAAATTACAACATCGATTTATACACACACAGAAAAAAAGAGTTAGTTGCAAAAAG GGCCAAAAACGATAATTTTAACGATAGATTAGAATGTTTGAAGTA Right flanking sequence: Indices 9136527 -- 9137026 GGGGTTAGTTTTTCGGTTTTGTTTTGTTTTGGTTTTTTTTGTTTGGATGTAGGGTTAGTTGTAAA ATAATTAAATACACATACACATATACAGACAATTAAAAATGTTAATGTTCGCTTTCATTGAGAAA GTAGAGTTTGAAGTTGCAGTAGTTGAGGTGGTTTTTACCTAATACTTCTTGTTATCGATCCAGAA TGATGCACACGTATGAATTCATTACTGGTTGTTGCAATGTGAAAATATGATTGTTTTTCATTTAC AAAAAAGGTGTCAGGTACCCAAATATTCTTAATGAACTCTGATCCAACCGATAGTGTTTCTACAC CAGGTCGTTTTCTATACGCTAAACGAGGATCGGTCCAAAATTGACGAAAGTAAAAATCCAATGTG AAGTCCTATTCAATTCACAATTTGATTCAATTCGATTCGATTCGACACGATACGATACGGTTTTC GTTAATTGGGGGAAAAGGTAGCAAAAAGAGATTGAGAGGTAATTC Found at i:9136552 original size:5 final size:5 Alignment explanation
Indices: 9136542--9136570 Score: 44 Period size: 5 Copynumber: 5.8 Consensus size: 5 9136532 TAGTTTTTCG * * 9136542 GTTTT GTTTT GTTTT GGTTT TTTTT GTTT 1 GTTTT GTTTT GTTTT GTTTT GTTTT GTTT 9136571 GGATGTAGGG Statistics Matches: 20, Mismatches: 4, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 5 20 1.00 ACGTcount: A:0.00, C:0.00, G:0.21, T:0.79 Consensus pattern (5 bp): GTTTT Left flanking sequence: Indices 9136042 -- 9136541 GATAGTATAGTTCCATTCTATCGATGTTATGAAATGATTTATGTTTTCATCAGCCAATTGAGTAC AATTATGGCCAGATGCATTTTTGGAACCATCACATAAATTAAAACTTAAAATAGAATTTCAAAAC GATTTCCAGATAAAAATCGATCAAATCGATAGTATCGAGAGTACAATCGCACAGTTTGCACCTCT AACCGATGACTTTCATGAAATGTACAAATCATTAAGAGCTGCTTCGCTCGAAATGTGCCAACTTT CTTTCACTTTCACTTGCCAATTGAACTCACTTGATTAGTCTTAATCGCTTGGAAGAAAACTGTTT TTCGTTCTGTAGAAATTTTCCATTTTCAATTCGATTTAGTAAATTACAACATCGATTTATACACA CACAGAAAAAAAGAGTTAGTTGCAAAAAGGGCCAAAAACGATAATTTTAACGATAGATTAGAATG TTTGAAGTATTTTTTTTTTTTTGTTTGTTTGGGGTTAGTTTTTCG Right flanking sequence: Indices 9136571 -- 9137070 GGATGTAGGGTTAGTTGTAAAATAATTAAATACACATACACATATACAGACAATTAAAAATGTTA ATGTTCGCTTTCATTGAGAAAGTAGAGTTTGAAGTTGCAGTAGTTGAGGTGGTTTTTACCTAATA CTTCTTGTTATCGATCCAGAATGATGCACACGTATGAATTCATTACTGGTTGTTGCAATGTGAAA ATATGATTGTTTTTCATTTACAAAAAAGGTGTCAGGTACCCAAATATTCTTAATGAACTCTGATC CAACCGATAGTGTTTCTACACCAGGTCGTTTTCTATACGCTAAACGAGGATCGGTCCAAAATTGA CGAAAGTAAAAATCCAATGTGAAGTCCTATTCAATTCACAATTTGATTCAATTCGATTCGATTCG ACACGATACGATACGGTTTTCGTTAATTGGGGGAAAAGGTAGCAAAAAGAGATTGAGAGGTAATT CATATTAGTAAACATTGGCAGTGAGAACTTACGTAACTAGTTAAC Found at i:9136611 original size:6 final size:6 Alignment explanation
Indices: 9136600--9136622 Score: 32 Period size: 6 Copynumber: 3.8 Consensus size: 6 9136590 AAATAATTAA * * 9136600 ATACAC ATACAC ATATAC AGACA 1 ATACAC ATACAC ATACAC ATACA 9136623 ATTAAAAATG Statistics Matches: 14, Mismatches: 3, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 6 14 1.00 ACGTcount: A:0.52, C:0.26, G:0.04, T:0.17 Consensus pattern (6 bp): ATACAC Left flanking sequence: Indices 9136100 -- 9136599 TGAGTACAATTATGGCCAGATGCATTTTTGGAACCATCACATAAATTAAAACTTAAAATAGAATT TCAAAACGATTTCCAGATAAAAATCGATCAAATCGATAGTATCGAGAGTACAATCGCACAGTTTG CACCTCTAACCGATGACTTTCATGAAATGTACAAATCATTAAGAGCTGCTTCGCTCGAAATGTGC CAACTTTCTTTCACTTTCACTTGCCAATTGAACTCACTTGATTAGTCTTAATCGCTTGGAAGAAA ACTGTTTTTCGTTCTGTAGAAATTTTCCATTTTCAATTCGATTTAGTAAATTACAACATCGATTT ATACACACACAGAAAAAAAGAGTTAGTTGCAAAAAGGGCCAAAAACGATAATTTTAACGATAGAT TAGAATGTTTGAAGTATTTTTTTTTTTTTGTTTGTTTGGGGTTAGTTTTTCGGTTTTGTTTTGTT TTGGTTTTTTTTGTTTGGATGTAGGGTTAGTTGTAAAATAATTAA Right flanking sequence: Indices 9136623 -- 9137122 ATTAAAAATGTTAATGTTCGCTTTCATTGAGAAAGTAGAGTTTGAAGTTGCAGTAGTTGAGGTGG TTTTTACCTAATACTTCTTGTTATCGATCCAGAATGATGCACACGTATGAATTCATTACTGGTTG TTGCAATGTGAAAATATGATTGTTTTTCATTTACAAAAAAGGTGTCAGGTACCCAAATATTCTTA ATGAACTCTGATCCAACCGATAGTGTTTCTACACCAGGTCGTTTTCTATACGCTAAACGAGGATC GGTCCAAAATTGACGAAAGTAAAAATCCAATGTGAAGTCCTATTCAATTCACAATTTGATTCAAT TCGATTCGATTCGACACGATACGATACGGTTTTCGTTAATTGGGGGAAAAGGTAGCAAAAAGAGA TTGAGAGGTAATTCATATTAGTAAACATTGGCAGTGAGAACTTACGTAACTAGTTAACTAATAGA CTACTAACTAAACGTCTTGTGTGTTCAAAAATATATATTCCAATC Found at i:9136960 original size:5 final size:5 Alignment explanation
Indices: 9136936--9136972 Score: 39 Period size: 5 Copynumber: 7.4 Consensus size: 5 9136926 TCAATTCACA * * ** * 9136936 ATTTG ATTCA ATTCG ATTCG ATTCG ACACG ATACG AT 1 ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG ATTCG AT 9136973 ACGGTTTTCG Statistics Matches: 26, Mismatches: 6, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 5 26 1.00 ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35 Consensus pattern (5 bp): ATTCG Left flanking sequence: Indices 9136436 -- 9136935 GAAAAAAAGAGTTAGTTGCAAAAAGGGCCAAAAACGATAATTTTAACGATAGATTAGAATGTTTG AAGTATTTTTTTTTTTTTGTTTGTTTGGGGTTAGTTTTTCGGTTTTGTTTTGTTTTGGTTTTTTT TGTTTGGATGTAGGGTTAGTTGTAAAATAATTAAATACACATACACATATACAGACAATTAAAAA TGTTAATGTTCGCTTTCATTGAGAAAGTAGAGTTTGAAGTTGCAGTAGTTGAGGTGGTTTTTACC TAATACTTCTTGTTATCGATCCAGAATGATGCACACGTATGAATTCATTACTGGTTGTTGCAATG TGAAAATATGATTGTTTTTCATTTACAAAAAAGGTGTCAGGTACCCAAATATTCTTAATGAACTC TGATCCAACCGATAGTGTTTCTACACCAGGTCGTTTTCTATACGCTAAACGAGGATCGGTCCAAA ATTGACGAAAGTAAAAATCCAATGTGAAGTCCTATTCAATTCACA Right flanking sequence: Indices 9136973 -- 9137472 ACGGTTTTCGTTAATTGGGGGAAAAGGTAGCAAAAAGAGATTGAGAGGTAATTCATATTAGTAAA CATTGGCAGTGAGAACTTACGTAACTAGTTAACTAATAGACTACTAACTAAACGTCTTGTGTGTT CAAAAATATATATTCCAATCAACTAAAATAAATTCATAGAGAAATCGATAGAGAGAATTTGTGAA AACTAGGCAGAAAGTTATATTCATTTTGGGCACAACAGATACACTTAACAAACACGCGAGGATAG AACTTGCGTCAAATGGAAAACAAGAAGAATTCATAACGTGCAACAATTTTCAGTTATCAATTTAT GCAGGAAGATGGGACATAGGGTCGCGGGACTTCAGACAACATGCAATAACATCGAATTGAATCTT TATACAGCGTTTCGTTTTTTTTTTTCGATAGATCAGCATTGAGATCTTTAATAAAACTAAAAAAC AAACAGAATTAAATGAAATTACTAAGCGTATTTACATTAGAAATA Found at i:9136973 original size:5 final size:5 Alignment explanation
Indices: 9136949--9136975 Score: 33 Period size: 5 Copynumber: 5.4 Consensus size: 5 9136939 TGATTCAATT * * * 9136949 CGATT CGATT CGACA CGATA CGATA CG 1 CGATA CGATA CGATA CGATA CGATA CG 9136976 GTTTTCGTTA Statistics Matches: 19, Mismatches: 3, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 5 19 1.00 ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22 Consensus pattern (5 bp): CGATA Left flanking sequence: Indices 9136449 -- 9136948 AGTTGCAAAAAGGGCCAAAAACGATAATTTTAACGATAGATTAGAATGTTTGAAGTATTTTTTTT TTTTTGTTTGTTTGGGGTTAGTTTTTCGGTTTTGTTTTGTTTTGGTTTTTTTTGTTTGGATGTAG GGTTAGTTGTAAAATAATTAAATACACATACACATATACAGACAATTAAAAATGTTAATGTTCGC TTTCATTGAGAAAGTAGAGTTTGAAGTTGCAGTAGTTGAGGTGGTTTTTACCTAATACTTCTTGT TATCGATCCAGAATGATGCACACGTATGAATTCATTACTGGTTGTTGCAATGTGAAAATATGATT GTTTTTCATTTACAAAAAAGGTGTCAGGTACCCAAATATTCTTAATGAACTCTGATCCAACCGAT AGTGTTTCTACACCAGGTCGTTTTCTATACGCTAAACGAGGATCGGTCCAAAATTGACGAAAGTA AAAATCCAATGTGAAGTCCTATTCAATTCACAATTTGATTCAATT Right flanking sequence: Indices 9136976 -- 9137475 GTTTTCGTTAATTGGGGGAAAAGGTAGCAAAAAGAGATTGAGAGGTAATTCATATTAGTAAACAT TGGCAGTGAGAACTTACGTAACTAGTTAACTAATAGACTACTAACTAAACGTCTTGTGTGTTCAA AAATATATATTCCAATCAACTAAAATAAATTCATAGAGAAATCGATAGAGAGAATTTGTGAAAAC TAGGCAGAAAGTTATATTCATTTTGGGCACAACAGATACACTTAACAAACACGCGAGGATAGAAC TTGCGTCAAATGGAAAACAAGAAGAATTCATAACGTGCAACAATTTTCAGTTATCAATTTATGCA GGAAGATGGGACATAGGGTCGCGGGACTTCAGACAACATGCAATAACATCGAATTGAATCTTTAT ACAGCGTTTCGTTTTTTTTTTTCGATAGATCAGCATTGAGATCTTTAATAAAACTAAAAAACAAA CAGAATTAAATGAAATTACTAAGCGTATTTACATTAGAAATAGAA Found at i:9137894 original size:2 final size:2 Alignment explanation
Indices: 9137887--9137900 Score: 28 Period size: 2 Copynumber: 7.0 Consensus size: 2 9137877 GGTGGGCGGC 9137887 TG TG TG TG TG TG TG 1 TG TG TG TG TG TG TG 9137901 GGTATGGATA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 12 1.00 ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50 Consensus pattern (2 bp): TG Left flanking sequence: Indices 9137387 -- 9137886 TCGATAGATCAGCATTGAGATCTTTAATAAAACTAAAAAACAAACAGAATTAAATGAAATTACTA AGCGTATTTACATTAGAAATAGAAAGGGTTCTTGGGATCGGGTAAAGCATTTAAGTAGTACAGAA ACCTCTCACAAATATTCGTATGGATTCGTTGCTGTGATTGTGAAGTAGCTTGGCATTTTTCTGGC TACTAAACTGGGATGGTTGGGTTATTATTACTAGACTACTACGGCATCTATGGCAACAGGCTGGC AGATTGTTATTTGTACGCTTTATACACAGTATACACATTTGTATATCGTTGGCTTTTTTGGCTTG GCTCTTTTGTTTCAGCTTTTGCTTTTGTGCCTCAAAGCTAAGCGTTTTTGGCTACGATTGGATTG TTTAGAATCGGAGTCGATAGGGGGACTGGTTTGGATTGTAAAACGACAAACAATTTGGCTGTGTT TGCTCTGTTTGTATCTGTGTGCTTTTGTATCTGTGGGTGGGCGGC Right flanking sequence: Indices 9137901 -- 9138400 GGTATGGATAGTGTTTTTTTTTTGGGGGGCTTGGGGCGGATAAGGACCACTACTCGAGTTGTTTC TCTCAGTCTTGCATATCATTATCTTCAAGCGCGTCACGTGGCCGACATGGAACCAAAAATTAAAC AGGAAATCATGTAAATGTAAATGTTAAAGGTAAATGCAAATGCAAATGTAATAACAATAGTTGTT GTAGTAGTAGTAGTAGCAGGTAATAACATTTGTAAGTAGTTATAAATATTTATAGGGCGCGCACA CTGCTTGCTTTTTGGGTACTTTGCCAGTACTTTAACGCACGCTAAGTGGTGCTAGCTGATACGAG TCTACATGGCGTATACGTATTTTCTAAAAGGCTATGTGTGTTTTATTTATGCTGTGAAAATTGCA CACGGTTCTCGTGGGTTGCCTGCAATCTTCTCCCGGCTTTATTCTAGCAGATTTGGTTTCCACTC GGCTTCTGGCGCGCCCAGAACAAAAACTCAAACACAATTTGAACT Found at i:9138050 original size:6 final size:6 Alignment explanation
Indices: 9138039--9138081 Score: 56 Period size: 6 Copynumber: 7.0 Consensus size: 6 9138029 ACAGGAAATC * * * 9138039 ATGTAA ATGTAA ATGTTAA AGGTAA ATGCAA ATGCAA ATGTAA 1 ATGTAA ATGTAA ATG-TAA ATGTAA ATGTAA ATGTAA ATGTAA 9138082 TAACAATAGT Statistics Matches: 32, Mismatches: 4, Indels: 2 0.84 0.11 0.05 Matches are distributed among these distances: 6 27 0.84 7 5 0.16 ACGTcount: A:0.49, C:0.05, G:0.19, T:0.28 Consensus pattern (6 bp): ATGTAA Left flanking sequence: Indices 9137539 -- 9138038 GATTCGTTGCTGTGATTGTGAAGTAGCTTGGCATTTTTCTGGCTACTAAACTGGGATGGTTGGGT TATTATTACTAGACTACTACGGCATCTATGGCAACAGGCTGGCAGATTGTTATTTGTACGCTTTA TACACAGTATACACATTTGTATATCGTTGGCTTTTTTGGCTTGGCTCTTTTGTTTCAGCTTTTGC TTTTGTGCCTCAAAGCTAAGCGTTTTTGGCTACGATTGGATTGTTTAGAATCGGAGTCGATAGGG GGACTGGTTTGGATTGTAAAACGACAAACAATTTGGCTGTGTTTGCTCTGTTTGTATCTGTGTGC TTTTGTATCTGTGGGTGGGCGGCTGTGTGTGTGTGTGGGTATGGATAGTGTTTTTTTTTTGGGGG GCTTGGGGCGGATAAGGACCACTACTCGAGTTGTTTCTCTCAGTCTTGCATATCATTATCTTCAA GCGCGTCACGTGGCCGACATGGAACCAAAAATTAAACAGGAAATC Right flanking sequence: Indices 9138082 -- 9138581 TAACAATAGTTGTTGTAGTAGTAGTAGTAGCAGGTAATAACATTTGTAAGTAGTTATAAATATTT ATAGGGCGCGCACACTGCTTGCTTTTTGGGTACTTTGCCAGTACTTTAACGCACGCTAAGTGGTG CTAGCTGATACGAGTCTACATGGCGTATACGTATTTTCTAAAAGGCTATGTGTGTTTTATTTATG CTGTGAAAATTGCACACGGTTCTCGTGGGTTGCCTGCAATCTTCTCCCGGCTTTATTCTAGCAGA TTTGGTTTCCACTCGGCTTCTGGCGCGCCCAGAACAAAAACTCAAACACAATTTGAACTTAAAAA CGAATCAAAAACTCAAGCGTAATCGAAAAGGAAAATAAAATTTCGTGTGGATTATGCAATTTCCA TAACTCTGTTTTTGTGTTGGTGGGGATTTTGGCATTGCAAAAAAGGGTTCTAAAAGGGTCAACCT GGATTTTCGTACTTGTATATTCTTGGCACACACACAAACTCAACT Found at i:9138102 original size:3 final size:3 Alignment explanation
Indices: 9138088--9138111 Score: 34 Period size: 3 Copynumber: 8.0 Consensus size: 3 9138078 GTAATAACAA * * 9138088 TAG TTG TTG TAG TAG TAG TAG TAG 1 TAG TAG TAG TAG TAG TAG TAG TAG 9138112 CAGGTAATAA Statistics Matches: 19, Mismatches: 2, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 3 19 1.00 ACGTcount: A:0.25, C:0.00, G:0.33, T:0.42 Consensus pattern (3 bp): TAG Left flanking sequence: Indices 9137588 -- 9138087 ACTGGGATGGTTGGGTTATTATTACTAGACTACTACGGCATCTATGGCAACAGGCTGGCAGATTG TTATTTGTACGCTTTATACACAGTATACACATTTGTATATCGTTGGCTTTTTTGGCTTGGCTCTT TTGTTTCAGCTTTTGCTTTTGTGCCTCAAAGCTAAGCGTTTTTGGCTACGATTGGATTGTTTAGA ATCGGAGTCGATAGGGGGACTGGTTTGGATTGTAAAACGACAAACAATTTGGCTGTGTTTGCTCT GTTTGTATCTGTGTGCTTTTGTATCTGTGGGTGGGCGGCTGTGTGTGTGTGTGGGTATGGATAGT GTTTTTTTTTTGGGGGGCTTGGGGCGGATAAGGACCACTACTCGAGTTGTTTCTCTCAGTCTTGC ATATCATTATCTTCAAGCGCGTCACGTGGCCGACATGGAACCAAAAATTAAACAGGAAATCATGT AAATGTAAATGTTAAAGGTAAATGCAAATGCAAATGTAATAACAA Right flanking sequence: Indices 9138112 -- 9138611 CAGGTAATAACATTTGTAAGTAGTTATAAATATTTATAGGGCGCGCACACTGCTTGCTTTTTGGG TACTTTGCCAGTACTTTAACGCACGCTAAGTGGTGCTAGCTGATACGAGTCTACATGGCGTATAC GTATTTTCTAAAAGGCTATGTGTGTTTTATTTATGCTGTGAAAATTGCACACGGTTCTCGTGGGT TGCCTGCAATCTTCTCCCGGCTTTATTCTAGCAGATTTGGTTTCCACTCGGCTTCTGGCGCGCCC AGAACAAAAACTCAAACACAATTTGAACTTAAAAACGAATCAAAAACTCAAGCGTAATCGAAAAG GAAAATAAAATTTCGTGTGGATTATGCAATTTCCATAACTCTGTTTTTGTGTTGGTGGGGATTTT GGCATTGCAAAAAAGGGTTCTAAAAGGGTCAACCTGGATTTTCGTACTTGTATATTCTTGGCACA CACACAAACTCAACTCTAAATACGAATACTTATGTGCATGGCGGT Found at i:9140185 original size:1 final size:1 Alignment explanation
Indices: 9140181--9140197 Score: 34 Period size: 1 Copynumber: 17.0 Consensus size: 1 9140171 TTTTTCACTG 9140181 TTTTTTTTTTTTTTTTT 1 TTTTTTTTTTTTTTTTT 9140198 GGTTGTAACC Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 16 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 9139681 -- 9140180 AACAAATGCCGTCTTTAATTGCAATTACTTTATGTGTTTGAAATGGGAGGCACCCATTGAGTCCA TCAAAGAGCAAAGACATGAGCACAAAAATTTTCTTGGGTATTCCCTTTTACCCTTCATTTCTTAT ACCCGTCACGCTTCCACCCATACAAATTTTAGGCGTACAAAAAATGACCAGAGAACTGCAGCCCG CATACAAAAAATGACCTGCGGCCGATCGTTGACTGTGCGTCCACTCACCCATACGGCTCTTGCGC AGCAGGCCTCGGGTGGTTTTTTTACTCGTAACAAAAACACAACGTCGGTAAAACACTCGAGTATT TTGTGTTGCCGCAAGTAGGGTGTCAAAAAAAACGGGGTGCCTAGAGTACCGAGTGTTTATCGGGT GGACGTAGAGTGCGAGTGGCGGGCTGCAGTTCTCTGGTATACCATTTACAATTTACATATGTATA GACATGTGTATGTTGTGCTGTATGTATATTTCCGTTTTTTCACTG Right flanking sequence: Indices 9140198 -- 9140697 GGTTGTAACCTCATGTCATGTTGATTTTAACTGGCTCGCTGCTCGCCTGAGTTTGAATTGGATTG GACGCGTACTCTTATGTAAATTTGTCCCAGTTTTTACAGATGAAAAATTTTACAAGTTACAATAT ATTTTACTAGTATTATATTGAACTGATTTGTTTCACAAGTGATTTAAGAATAATTAAACCGGATT ACAAATACTTAACATTTTTCAATCGAAATTTTTCGTCTGGCTTTAAGGATATTCTCAGTGTATTT GCATGGGAATCTGTTACTGTGGCTATGTGTGTGTACGCGTGTTGTTGTTCTTGTTTCGGTTTGGC ATTGGCTCAGTTTATTTTTGAATTATTTTCATTAGCAGCGTAGCGATTCTGTTTTGTTACCGGCT CGCAAAATGTGGAAATGAAAAATTGTCATGTAAGAAATGATCGGGCTGGAAATGAACATGTTGTT GTTGTTGTTGTTGTTGCATTCTTGTTGTTACTGCTATCCTTGTTA Found at i:9140505 original size:3 final size:3 Alignment explanation
Indices: 9140497--9140512 Score: 25 Period size: 3 Copynumber: 5.3 Consensus size: 3 9140487 TGTGTACGCG * 9140497 TGT TGT TGT TCT TGT T 1 TGT TGT TGT TGT TGT T 9140513 TCGGTTTGGC Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 3 11 1.00 ACGTcount: A:0.00, C:0.06, G:0.25, T:0.69 Consensus pattern (3 bp): TGT Left flanking sequence: Indices 9139997 -- 9140496 TCGAGTATTTTGTGTTGCCGCAAGTAGGGTGTCAAAAAAAACGGGGTGCCTAGAGTACCGAGTGT TTATCGGGTGGACGTAGAGTGCGAGTGGCGGGCTGCAGTTCTCTGGTATACCATTTACAATTTAC ATATGTATAGACATGTGTATGTTGTGCTGTATGTATATTTCCGTTTTTTCACTGTTTTTTTTTTT TTTTTTGGTTGTAACCTCATGTCATGTTGATTTTAACTGGCTCGCTGCTCGCCTGAGTTTGAATT GGATTGGACGCGTACTCTTATGTAAATTTGTCCCAGTTTTTACAGATGAAAAATTTTACAAGTTA CAATATATTTTACTAGTATTATATTGAACTGATTTGTTTCACAAGTGATTTAAGAATAATTAAAC CGGATTACAAATACTTAACATTTTTCAATCGAAATTTTTCGTCTGGCTTTAAGGATATTCTCAGT GTATTTGCATGGGAATCTGTTACTGTGGCTATGTGTGTGTACGCG Right flanking sequence: Indices 9140513 -- 9141012 TCGGTTTGGCATTGGCTCAGTTTATTTTTGAATTATTTTCATTAGCAGCGTAGCGATTCTGTTTT GTTACCGGCTCGCAAAATGTGGAAATGAAAAATTGTCATGTAAGAAATGATCGGGCTGGAAATGA ACATGTTGTTGTTGTTGTTGTTGTTGCATTCTTGTTGTTACTGCTATCCTTGTTAACGTGTTTTC TGTGCTAGATTATTTTTCGGCAGTATGTTCGTGTTTATGTTCCTGGTGGGCATGTTATTTTCGCA TAAATTGATTGCCAAAGCCAAACTGTGCGATTATCTTGGTTGTATTGTGTCATACGAACATTTCC TTAAGGCAAAACAGTGAGAGTGTATTTTATTAATACGTGTATGCAGCAAAAGTGCAGCAAAAAGT TTGTGTTCGTGTGAGTAATTTCCTATTAAGTGCAGTTGTTGCACCCTGTTTTTTGTATCTTTTTC CAACGAAAGTATTTGAGTATCTGCGAATTCTCTTGTGCGCCAATT Found at i:9140654 original size:3 final size:3 Alignment explanation
Indices: 9140646--9140681 Score: 47 Period size: 3 Copynumber: 11.3 Consensus size: 3 9140636 GAAATGAACA * 9140646 TGT TGT TGT TGT TGT TGT TGT TGCAT TCT TGT TGT T 1 TGT TGT TGT TGT TGT TGT TGT TG--T TGT TGT TGT T 9140682 ACTGCTATCC Statistics Matches: 29, Mismatches: 2, Indels: 4 0.83 0.06 0.11 Matches are distributed among these distances: 3 27 0.93 5 2 0.07 ACGTcount: A:0.03, C:0.06, G:0.28, T:0.64 Consensus pattern (3 bp): TGT Left flanking sequence: Indices 9140146 -- 9140645 TGTTGTGCTGTATGTATATTTCCGTTTTTTCACTGTTTTTTTTTTTTTTTTTGGTTGTAACCTCA TGTCATGTTGATTTTAACTGGCTCGCTGCTCGCCTGAGTTTGAATTGGATTGGACGCGTACTCTT ATGTAAATTTGTCCCAGTTTTTACAGATGAAAAATTTTACAAGTTACAATATATTTTACTAGTAT TATATTGAACTGATTTGTTTCACAAGTGATTTAAGAATAATTAAACCGGATTACAAATACTTAAC ATTTTTCAATCGAAATTTTTCGTCTGGCTTTAAGGATATTCTCAGTGTATTTGCATGGGAATCTG TTACTGTGGCTATGTGTGTGTACGCGTGTTGTTGTTCTTGTTTCGGTTTGGCATTGGCTCAGTTT ATTTTTGAATTATTTTCATTAGCAGCGTAGCGATTCTGTTTTGTTACCGGCTCGCAAAATGTGGA AATGAAAAATTGTCATGTAAGAAATGATCGGGCTGGAAATGAACA Right flanking sequence: Indices 9140682 -- 9141181 ACTGCTATCCTTGTTAACGTGTTTTCTGTGCTAGATTATTTTTCGGCAGTATGTTCGTGTTTATG TTCCTGGTGGGCATGTTATTTTCGCATAAATTGATTGCCAAAGCCAAACTGTGCGATTATCTTGG TTGTATTGTGTCATACGAACATTTCCTTAAGGCAAAACAGTGAGAGTGTATTTTATTAATACGTG TATGCAGCAAAAGTGCAGCAAAAAGTTTGTGTTCGTGTGAGTAATTTCCTATTAAGTGCAGTTGT TGCACCCTGTTTTTTGTATCTTTTTCCAACGAAAGTATTTGAGTATCTGCGAATTCTCTTGTGCG CCAATTGATGTGATTATTTTTCATCTGTTAGATGCTCTCTATTTGTCACACTAAATGATATAAAT GTATTAAGATAAAAAAAAATAAATACGATACTAGAAATGATGACAAGGATTAAATTAAGCAAATG AGTCTCCTGAGATCTAAGATTTGGTAATTTATGTGAATCTATCCT Found at i:9141911 original size:4 final size:4 Alignment explanation
Indices: 9141902--9141918 Score: 25 Period size: 4 Copynumber: 4.0 Consensus size: 4 9141892 AATTCCGAAG 9141902 TGGA TGGA TGCGA TGGA 1 TGGA TGGA TG-GA TGGA 9141919 GACAAAGAAA Statistics Matches: 12, Mismatches: 0, Indels: 2 0.86 0.00 0.14 Matches are distributed among these distances: 4 8 0.67 5 4 0.33 ACGTcount: A:0.24, C:0.06, G:0.47, T:0.24 Consensus pattern (4 bp): TGGA Left flanking sequence: Indices 9141402 -- 9141901 AAGGAAAACGAAAACACAGAAACAGGCATAAATAATTAGTCCCTTGTACGAGATGGCTAAGTCCA TATATCGTTTGACGAACACATCGACACCGAGCTTGAGTATATGCTATGGATTATATGCTTTGTGG ATTATGATATTCATTCATATTCATTTTGTTAACAAATACGCATGCGCGCAGCCTTTGTCAATGCG GCCGCTGAGATTAATGTTATTTAATTAATTTTGATATTTTGCATTTGACCAGATCACAACAAACA TAATGAGGGCTATATGCGAGTATAGGTATGATGGATATATGTATGTATGAATATGTCATAAATAT CTCTCGTTTCTCTGGGGTGGAGGGAACCCATCATAGTGTCACTGTGTATGTGGGTTGGGGAAATG GATGAACTTTGGCCGTAATGTACTCGATGGGGCGATAAATAAAGATTTATACAGCAATTAGATTG ATTGACTTTATCGCAGTTATCCATGTTATCTATAAAATTCCGAAG Right flanking sequence: Indices 9141919 -- 9142418 GACAAAGAAACGCAAAAGGCAACAAACTCAGGATGAACAAATGTTGAAATGGCATTTCAAAGCGT CAAACTCGTAGTTGAATAATAGATAGAGATAGAGCGCGAGTGTGGGTGAAAGAGAGAGCAGCACT TGGTCTGGGCTCAAAAATTAGCTCAAAATGTGTATAATTTGGGGTAATTTCAATGTAAGTATATC ATTGTATATATTTCGGTTTTGCATTGTTCTGGCCGAGAGAAGCTTTTGAAACGGAACAACAAACA ATTTGCGAACATCATGGCCTTATTGGCTAACATTGAAACAATAAACACAAAACGAATATGCAACA TTGGAATTTCATAGTTGGCAATTGCATTGCAATAACGATTCGTTTTACACAACATTTAATTGGCA GAACTTTGTATATATAGGATATTGGTATATGTATATAGATATTGGTTTGCAGTTGGCTTTGAATG GTCGAAAACAAACACAATCTTAAGTGAATCAAAGTAATTGTAATA Found at