TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_X assembled 2004-3-18 md5checksum:d304f6c7f10939bacf40e33958147342 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 22224390 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Warning! 8514 characters in sequence are not A, C, G, or T Found at i: i:15262559 original size:10 final size:10 Alignment explanation
Indices: 15262540--15262559 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 15262530 TAAAATTATT * 15262540 AAGCCACACA 1 AAGACACACA 15262550 AAGACACACA 1 AAGACACACA 15262560 CACATACGCA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.55, C:0.35, G:0.10, T:0.00 Consensus pattern (10 bp): AAGACACACA Left flanking sequence: Indices 15262040 -- 15262539 CGGCAGCGTAATAAATTCGCTGGTAGATGTGGCACCTCTTAAACCGATTTATTTATCGCCCGGCC AGAAAACCTAAAAAACCAAAAACCCTTGCCATTCAGCCAGACAGACACACGCACACACTCGCAAT AATAAAGGTCATATATCAGGCGGAGTCGGCAAAGGACTTCATGTCTTCCTGTTTGTCTTGAATTC GAATCGGGGATTGCCTGCTGGTGATTTATATCACCCAACCAGCCAACCCACCAACCAACCAACCC ACCAACCAACCAAGCAACCAACCAAGGCGATATAAAGGAAACCCTTTGGAGACTATATATGCAAA TAAGCCGGATGAGAGGAAGCGAGAGAAGCTGCGTGAAATTCAATTAAAAGAAAACTGTTTTCTGT TTTCCCTGTGAAAGGAATAACGCAATTACGACAGAGGTAGACGACAAGCTCATCCTTTTTTGCCT TCAAGCCGGGCATATAAACCCATAACCAAAAGCAATAAAATTATT Right flanking sequence: Indices 15262560 -- 15263059 CACATACGCACACACAAATATACTCAGGGTGAAAAGCAAGAGACCGAGTGAATAAAGTGAACTCT GGGGAAATGAGGGCACACATCACGGATCCGGGATCCTCCTGCATGAAACATGATGCAATGAACGC AATCACCAGGCATTATCATCTCCACCATCGTCTCCCCCAAGGCAAAGTGAAAAATCATTCGCCGA GACGTTGAATTTTTAATGCACTTTGGCTCTCGATTTTTGCGGCTTGCGACTCCTGCTGGCTCCTG GCTCCTGAATCCGGTGTCCTGTCTCCTGAATTCTGGCTCCTCGGATGCGGATGCGGATGTCTAGA TGCGATGGCACTTTTAGTGCTCGACTCTGGCTTACGTAATCATCGACTCCACGAAGTTTGCTTTA TTCTGGGCCACCTGCTTGTATGAATGCGAATGCTGAGCTAGTTAGCATTCGAATTGCTTCACCCG GCGTATACGTAATGCGGCGCTTTCTTCTACGAAATTACTATGCGA Found at i:15263811 original size:7 final size:7 Alignment explanation
Indices: 15263797--15263818 Score: 37 Period size: 7 Copynumber: 3.1 Consensus size: 7 15263787 TGTCGACTGG 15263797 CAAGGAC 1 CAAGGAC * 15263804 CGAGGAC 1 CAAGGAC 15263811 CAAGGAC 1 CAAGGAC 15263818 C 1 C 15263819 TGCTGCCTGC Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 7 13 1.00 ACGTcount: A:0.36, C:0.32, G:0.32, T:0.00 Consensus pattern (7 bp): CAAGGAC Left flanking sequence: Indices 15263297 -- 15263796 CAAAAAGGTGTTTCATCTTTACAGAGTTGGTTCCTAATAGGGTTATACAATTTTCCCAGGAAGCT AGACAGAAATACATTTCTGCCGAACTGAAAGGCACATGTAATGTAGCAAATGTACAGAAATCATT CATTTTCATTCCAAGTAAATTTCACATTTTTGATTTAGTATATTCTTGTGCTTGCATATTATGTA TGTAAGGAAAGATCTATCAAATTGAATGAGGCATCTCTTAAGACTCTAAGTTTCTGCCCAAGTGC AAGTGATTAATTAGTTCAATCAGCAATCCTGAGCGGCTAAATCCATTGTCCAGAGATTCGCTAGC GACTGTGGAATGGATGGGATCGATTTAACGCCGTTTGCAGCTGAAATCGTTCGATAGGCGATAGT GGCAATCGCTGCAATTACCTATCGGCGTCGTCGTCGGCGAGTGGGTGGTGCTGATTTAAGGACCC GCGCCCACAGGCCTTGCTCCAAATGTGCGCTGGCTTGTCGACTGG Right flanking sequence: Indices 15263819 -- 15264318 TGCTGCCTGCCTGGCTCAACAATTTTTCAATGTCGGAACTTTTCTGTCGCTCCTGCTACTTTTTC TGTTGCTTGAGCGGCCACCTTTTCAGCCGCGAGTTTGAAAAATTGAAAAACGTTTTAATGGCAGC GGCAATGGAAATTAATGGCCATGCTGTTGGTGGCTGCCAGTTGGCGGGCATTTAATTTTGCTCAA TCGCATCGTAGTGCCGTATTACGCATACGCCGCGTGTTCGCAGCCGAGTTAATGCAATTTGGTGG CGAATGCCGGCGAAAATAGGGCGGAGAGAGGGGCGTGGATTAGCCTGAATTGGCTTAACAATGCA CAGGCCGGGATAATAAAGAATCCCACAGGACACTTCGCTACGATAACGATAAATTACAAAGGGGA ATTGCAGTCGGCTTCATTTAAGTTCAAAGCTTGGCTAAAATAATATTACTTGGCAAAGGAAATTT GCAGGAATAGCAATAATATTTATAGAATGTAAATGATATATCATT Found at i:15263931 original size:8 final size:8 Alignment explanation
Indices: 15263918--15263933 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 15263908 AGCCGCGAGT 15263918 TTGAAAAA 1 TTGAAAAA 15263926 TTGAAAAA 1 TTGAAAAA 15263934 CGTTTTAATG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.00, G:0.12, T:0.25 Consensus pattern (8 bp): TTGAAAAA Left flanking sequence: Indices 15263418 -- 15263917 GAAATCATTCATTTTCATTCCAAGTAAATTTCACATTTTTGATTTAGTATATTCTTGTGCTTGCA TATTATGTATGTAAGGAAAGATCTATCAAATTGAATGAGGCATCTCTTAAGACTCTAAGTTTCTG CCCAAGTGCAAGTGATTAATTAGTTCAATCAGCAATCCTGAGCGGCTAAATCCATTGTCCAGAGA TTCGCTAGCGACTGTGGAATGGATGGGATCGATTTAACGCCGTTTGCAGCTGAAATCGTTCGATA GGCGATAGTGGCAATCGCTGCAATTACCTATCGGCGTCGTCGTCGGCGAGTGGGTGGTGCTGATT TAAGGACCCGCGCCCACAGGCCTTGCTCCAAATGTGCGCTGGCTTGTCGACTGGCAAGGACCGAG GACCAAGGACCTGCTGCCTGCCTGGCTCAACAATTTTTCAATGTCGGAACTTTTCTGTCGCTCCT GCTACTTTTTCTGTTGCTTGAGCGGCCACCTTTTCAGCCGCGAGT Right flanking sequence: Indices 15263934 -- 15264433 CGTTTTAATGGCAGCGGCAATGGAAATTAATGGCCATGCTGTTGGTGGCTGCCAGTTGGCGGGCA TTTAATTTTGCTCAATCGCATCGTAGTGCCGTATTACGCATACGCCGCGTGTTCGCAGCCGAGTT AATGCAATTTGGTGGCGAATGCCGGCGAAAATAGGGCGGAGAGAGGGGCGTGGATTAGCCTGAAT TGGCTTAACAATGCACAGGCCGGGATAATAAAGAATCCCACAGGACACTTCGCTACGATAACGAT AAATTACAAAGGGGAATTGCAGTCGGCTTCATTTAAGTTCAAAGCTTGGCTAAAATAATATTACT TGGCAAAGGAAATTTGCAGGAATAGCAATAATATTTATAGAATGTAAATGATATATCATTATTAT GAAACAAATGTTATTCAATCATGTTGCGTGCATTTAAAATTCCCAGCAATTACTTTCAACTGCAG CTATTTTTACTTAAAACTCTACTTTATAGTTGGAAAGTCATAACA Found at i:15265013 original size:8 final size:8 Alignment explanation
Indices: 15264992--15265020 Score: 37 Period size: 8 Copynumber: 3.6 Consensus size: 8 15264982 AACTAATTTG * 15264992 CACACACA 1 CACACTCA 15265000 CACACTCA 1 CACACTCA * 15265008 CTCACTCA 1 CACACTCA * 15265016 AACAC 1 CACAC 15265021 GCGTTAACCC Statistics Matches: 17, Mismatches: 4, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 8 17 1.00 ACGTcount: A:0.41, C:0.48, G:0.00, T:0.10 Consensus pattern (8 bp): CACACTCA Left flanking sequence: Indices 15264492 -- 15264991 GCTTTTAGTCAATCGTTTAGTGTGCGCATCTGAATCTGATTGTGTTAATCAAAATGAAAGTGTGC TATCAACACATAAAATACAATTAAAATCCTTTGAATTTAATAAAAGCGACTGCCAAAAGCCCATA AAAACGGATTTCATTTATTTAGCAGCTATATTAAATATTTCAGAGCCATGTGCAAAATGCCAAAA AGAATGAAAACGTAACGAATTGTGGCGAAAAATGCAAAAACCAAGGACGTTTACAAAAAAATAGA AAAAGTAGCCCATAAAATATGCATGCCAGAAATGGCTCGTCTATCTTTAGCCCAAAAAGCAAAAT GTATGTATTTTAAAGCCAATTGATTTTTCGCCGATATTTTGGGCTAACAAAACAATCGCATAAAT AAGTTATTGACAGCTACAGATTCGTTTGCCGTCTTTTCATTGAGAATTTGATAATCCAATTCAAC GCACAATGGCAGCCCAACATCCGCCCGTCACTTTCAACTAATTTG Right flanking sequence: Indices 15265021 -- 15265520 GCGTTAACCCATTTCCTGGCCGCCATATTCGTTTTCATTCTCAGTTCATTTTGAGTTCATTTTAA GTTTCACTTTCATTCACCCCGACATACACCTCAAATTGGATTGGCCCCGTCCTAATGCCTTTGCA CTTCATTGCAGCGCTAAGTCACAAAAAAAAAAAGGAAGGAAGGAAGGAAGGAGGGGAAAAAGGTG CCGAAAGCATAAGCAGCATAATTATTTAACGCCTTGCATCAATCAACTTTTATCTGGCCGTGAAG TGTTAGCTAATGAGCTTAAATATTTAATTAAGGCAAATAAAATCCGGCTTCGCGACGAAGGGAGG TGAGGATGCGTATGTGTGTGTGTGTTCGTAAGAAGCATATTTTCGCACCCACAGAGAGCGGCACG CACACACATAATTGGCATCAACTCGTTCGCAGGACCAATTTTTGTCCTTCTCATCCTACGCCTGT CAATCCCAATTCATATGATGAACGGCTGGAAGGGGGGGAGGGGGG Found at i:15265827 original size:8 final size:8 Alignment explanation
Indices: 15265810--15265831 Score: 37 Period size: 8 Copynumber: 2.8 Consensus size: 8 15265800 TATGCATTAA * 15265810 TACTAAAC 1 TACAAAAC 15265818 TACAAAAC 1 TACAAAAC 15265826 TACAAA 1 TACAAA 15265832 GTTACTCGAG Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 8 13 1.00 ACGTcount: A:0.59, C:0.23, G:0.00, T:0.18 Consensus pattern (8 bp): TACAAAAC Left flanking sequence: Indices 15265310 -- 15265809 AAGGCAAATAAAATCCGGCTTCGCGACGAAGGGAGGTGAGGATGCGTATGTGTGTGTGTGTTCGT AAGAAGCATATTTTCGCACCCACAGAGAGCGGCACGCACACACATAATTGGCATCAACTCGTTCG CAGGACCAATTTTTGTCCTTCTCATCCTACGCCTGTCAATCCCAATTCATATGATGAACGGCTGG AAGGGGGGGAGGGGGGTTGGGTTGCGAGAAGGGTAGGATGAACGGTGGGCGGGGCCAGGTCACAG TTAGTCAGTCAGTCAGTCAGGACCCCCGCATGTGCGTCAAATTACTTCCGCTGGATTTGAATTTG TTGTTAAGGCTGGCGACACAACACTTGAAGAAATAAGAAGTTCCGCTCCTTCGCATCAGCTATAC ATTTTGTAATGCATAAACATAGCTGACTAAATGTTTCAATGTAAAAGTTAAGGGGCGCCAATATG TTAAACATAGGTTTCGTAGTTTGGCTGCACTTTTGTATGCATTAA Right flanking sequence: Indices 15265832 -- 15266331 GTTACTCGAGTTACTTAAACTCGATTAACGATATTGTCTGACTTCAATTGAAGTATTTCACTAGC TTTTAAATGTGGGGTTAGTTACTGCAATTAGTATGATAAGTGTTTAGATGAAAAACACTCAAGTG TCATAATAAAATGTTCATTTTTCCTGGTGCAGTGAGAGGAGACTAACAGTAAGCAGCTCAAAAAA GAAAAAAGAAGGACTCAGCTGGCTGAGCTTGTTTCCATCAAATGGCGCACGCACACCCACACGCA ATCACACTCACACAATTACGCGAATGACAGGAAAAGTGAGCACAATGCGCATGAAAGCGTAAAAA GCAACAGAGATGGCAAAGTGCCGCAGCAGGAAGCTGAAATGTGTATGCAATGAGCGAGGAGAGAA ATGGAAAAATTATAAAATACTCGCACACACACACACACAGTGAGCAGAACCACCCAGCCACACAC ACACACACACATAAAGCATAGCCCAGCGAAAGGCAAATGAATGCC Found at i:15266033 original size:7 final size:7 Alignment explanation
Indices: 15266021--15266036 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 15266011 TAAGCAGCTC 15266021 AAAAAAG 1 AAAAAAG 15266028 AAAAAAG 1 AAAAAAG 15266035 AA 1 AA 15266037 GGACTCAGCT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00 Consensus pattern (7 bp): AAAAAAG Left flanking sequence: Indices 15265521 -- 15266020 TTGGGTTGCGAGAAGGGTAGGATGAACGGTGGGCGGGGCCAGGTCACAGTTAGTCAGTCAGTCAG TCAGGACCCCCGCATGTGCGTCAAATTACTTCCGCTGGATTTGAATTTGTTGTTAAGGCTGGCGA CACAACACTTGAAGAAATAAGAAGTTCCGCTCCTTCGCATCAGCTATACATTTTGTAATGCATAA ACATAGCTGACTAAATGTTTCAATGTAAAAGTTAAGGGGCGCCAATATGTTAAACATAGGTTTCG TAGTTTGGCTGCACTTTTGTATGCATTAATACTAAACTACAAAACTACAAAGTTACTCGAGTTAC TTAAACTCGATTAACGATATTGTCTGACTTCAATTGAAGTATTTCACTAGCTTTTAAATGTGGGG TTAGTTACTGCAATTAGTATGATAAGTGTTTAGATGAAAAACACTCAAGTGTCATAATAAAATGT TCATTTTTCCTGGTGCAGTGAGAGGAGACTAACAGTAAGCAGCTC Right flanking sequence: Indices 15266037 -- 15266536 GGACTCAGCTGGCTGAGCTTGTTTCCATCAAATGGCGCACGCACACCCACACGCAATCACACTCA CACAATTACGCGAATGACAGGAAAAGTGAGCACAATGCGCATGAAAGCGTAAAAAGCAACAGAGA TGGCAAAGTGCCGCAGCAGGAAGCTGAAATGTGTATGCAATGAGCGAGGAGAGAAATGGAAAAAT TATAAAATACTCGCACACACACACACACAGTGAGCAGAACCACCCAGCCACACACACACACACAC ATAAAGCATAGCCCAGCGAAAGGCAAATGAATGCCAATTAAGCCTACACTTGAACCCCAGCATCG TCGAAGGACGAAGGACGAAATGCGTTGAATGAAAGGCGAATTGCCGCGCACCGTCCTCGCTGGCA ATCAACAAAAGACGCTCGTCGAAATAATAAATGCGTTAAAAAAGGCTAAACACACTGACACGCCA ACACATACACGTGCAGTACGCACACGCATGCATACACTCGTACAA Found at i:15266375 original size:7 final size:7 Alignment explanation
Indices: 15266363--15266380 Score: 36 Period size: 7 Copynumber: 2.6 Consensus size: 7 15266353 CCAGCATCGT 15266363 CGAAGGA 1 CGAAGGA 15266370 CGAAGGA 1 CGAAGGA 15266377 CGAA 1 CGAA 15266381 ATGCGTTGAA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.44, C:0.17, G:0.39, T:0.00 Consensus pattern (7 bp): CGAAGGA Left flanking sequence: Indices 15265863 -- 15266362 TATTGTCTGACTTCAATTGAAGTATTTCACTAGCTTTTAAATGTGGGGTTAGTTACTGCAATTAG TATGATAAGTGTTTAGATGAAAAACACTCAAGTGTCATAATAAAATGTTCATTTTTCCTGGTGCA GTGAGAGGAGACTAACAGTAAGCAGCTCAAAAAAGAAAAAAGAAGGACTCAGCTGGCTGAGCTTG TTTCCATCAAATGGCGCACGCACACCCACACGCAATCACACTCACACAATTACGCGAATGACAGG AAAAGTGAGCACAATGCGCATGAAAGCGTAAAAAGCAACAGAGATGGCAAAGTGCCGCAGCAGGA AGCTGAAATGTGTATGCAATGAGCGAGGAGAGAAATGGAAAAATTATAAAATACTCGCACACACA CACACACAGTGAGCAGAACCACCCAGCCACACACACACACACACATAAAGCATAGCCCAGCGAAA GGCAAATGAATGCCAATTAAGCCTACACTTGAACCCCAGCATCGT Right flanking sequence: Indices 15266381 -- 15266880 ATGCGTTGAATGAAAGGCGAATTGCCGCGCACCGTCCTCGCTGGCAATCAACAAAAGACGCTCGT CGAAATAATAAATGCGTTAAAAAAGGCTAAACACACTGACACGCCAACACATACACGTGCAGTAC GCACACGCATGCATACACTCGTACAATTGTGCACTGGGAGAAACTGGAACTGAAAAAGCTAGAGT CTTACAGATCAGACATTTACTGCTTCCTGTATGGTAAAAACAACTATATGTTTTTACTTAACTTA GCAGAACCTCAGTGTGTTTATCTGCAGATAAATGTATATATTATTAATGAATTTATTATGAAATT GTTTCTTATACGTTGACCTAGTTCTCTATGTTTCTCTACCAGCTCGACAGGAGTTCCAGCCCAAG ATTAAGTAGCTTGTTCGAGCCCATCGATCATTATTTTGGTCGGTGTACAAGCATCCTACAGACAA GCTTACATGTTTCTCGTATTGCTCTTTCTCAGTTTTGTTTTGCCC Found at i:15267146 original size:8 final size:8 Alignment explanation
Indices: 15267133--15267148 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 15267123 ATCCTTCCCC 15267133 GCCCACAA 1 GCCCACAA 15267141 GCCCACAA 1 GCCCACAA 15267149 AAAAAGAGAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.50, G:0.12, T:0.00 Consensus pattern (8 bp): GCCCACAA Left flanking sequence: Indices 15266633 -- 15267132 TTAACTTAGCAGAACCTCAGTGTGTTTATCTGCAGATAAATGTATATATTATTAATGAATTTATT ATGAAATTGTTTCTTATACGTTGACCTAGTTCTCTATGTTTCTCTACCAGCTCGACAGGAGTTCC AGCCCAAGATTAAGTAGCTTGTTCGAGCCCATCGATCATTATTTTGGTCGGTGTACAAGCATCCT ACAGACAAGCTTACATGTTTCTCGTATTGCTCTTTCTCAGTTTTGTTTTGCCCTTTTTTTTTATT TTGAATTTTTTGTAAAATAAAAGAACACAGTGCAGGGGCGTGACGAAGTGCGTCCAAAGGTGCCC GGGCAAACTGGAGGAGCATTGTGGGGGATTTCGCAGAGAACAAGCCATCTCAAGTCAAGTCGAGG CGCAAACACAAAAGGGGAAATTGTAATAAAAATAATTGACAACTATTTGACATGCCTCATGTCCG CACACACGCAAAGGCCATCCAAACACACAGTCCACATCCTTCCCC Right flanking sequence: Indices 15267149 -- 15267648 AAAAAGAGAAGAGAGAATGCTATAGTCGAGTTCCCCGACTATCAGATACCCGTTACTCACTGACT TACTTACGAATTGGTAAAAAGTTTTTTTTTCAAATCGATTGAAATTTACAAGACTAATCAAAATG TGAAAAATATCAATCATCAATATCCATATGAAAAATATATCAATATCAAAAGTGTGGGCGTGGCA GTTTTGTGTGGATTGTGGGCGTTCGAGTGGGCTTGCCAACATAGGTCAACAAACTTGTCTCTAGA ATCTGTCTGCTGAATCTCAACCTTCTACCCATGATAGTTTCTGAGATCTCGACTTGGCTATTGAT CAAGAATATATATACTCTATATAGTCGGAAACGCTTCCTTCTGCCTATTACATACTTTTGAACGA ATCTAATATACCCTTTTACTCTAAGAATAGCGGGTATAATAAGAAAAACACAGTGGGTTTCGATG GGTGGTGTTCGCATGTGTGCCTCCTCCATGGACGCCCCCAAAAAA Found at i:15268612 original size:8 final size:8 Alignment explanation
Indices: 15268594--15268633 Score: 52 Period size: 8 Copynumber: 5.1 Consensus size: 8 15268584 GGACAGCTCA 15268594 CGGAA-TG 1 CGGAAGTG 15268601 CGGAAGTG 1 CGGAAGTG 15268609 CGGAAGTG 1 CGGAAGTG * * 15268617 AGGAAGTT 1 CGGAAGTG * 15268625 CGGAAATG 1 CGGAAGTG 15268633 C 1 C 15268634 TGGCCAGAAG Statistics Matches: 27, Mismatches: 5, Indels: 1 0.82 0.15 0.03 Matches are distributed among these distances: 7 5 0.19 8 22 0.81 ACGTcount: A:0.30, C:0.12, G:0.42, T:0.15 Consensus pattern (8 bp): CGGAAGTG Left flanking sequence: Indices 15268094 -- 15268593 GGGAAACTCTGGGTGAAGGGAATGGGTGATCTTATTATAGCCCTCGACCCGAGACGGAAATGTTT TTTGACCGGGATCCGTAACCCTTTTAAGACGAATCCCGTGATTGATTGCAGCTCGGCCAACTGAG GCATACAATCAATTTCTCGGCGGCAGCATAATTAAATAAAAAGTATGCAGAGAAAAATGAAAATG AAGAAACCATCAGGATTCAGTTTTGCATAGCGAAGTAAATTATGTTTGATTGATGATTCGCCGTC CGAGATGAAACAAAAAGATATCAAAAAGAAGTGAGATACAAAGGGACGAGTGGATGAGTATGTGT GGCGAACCCAATCAAAATGGAAATTAATGGTAAGGAGTGTCTGTTACACGGCAAAGCCGCCTTGC GAATGGAACACGTTCCGGCTAATAGGCACGTACCACGCGCAGTTGCCAAGATGCGGCGATAAAGC CGGCTGGCAAATGAGTTAGTTGCCGCTTTTTCTGAGGACAGCTCA Right flanking sequence: Indices 15268634 -- 15269133 TGGCCAGAAGTCAGTCCACCCCACTTGGCCAGACAACCAGTCAACCAGCCAAGCAGTCACCCAAT CACCAAGTCACCCCAGCCAGCCAAAAGGATCCAAAGGACGAAAGGACTAAGAGCAGGACCAAATG AAGACGCCTGCCCTGCTGCTTAACGAAGGTAACAACGATTTTTATGGTTCTCGGTATTTGGCTTC ACGGGTAATCGAAAGTTAAGGTAAACAGACCCCCAAGCCAGCAAAAAAAAAAAAAAATAAAAAAA TAACCAAAATGAAATGGGGAAGGTAAAATTCAAGTAAATGGGTAAAAGAAGTGGAGCCACAGCTA AAGTAGCTGATTTTGGGGGATGGAAAGTGCTTGTTAAAGATTTTGATATGTAGCAGATAATCGAG AAATTCAACAATTTTTTTTATATTTGGTTATCATACTTGAAATATCTGGAAGAGTAATCAAACGG GAAGATTCAATGGAAGACAAAAGCAAAATGAAACATCATATGCTT Found at i:15268744 original size:8 final size:8 Alignment explanation
Indices: 15268722--15268745 Score: 32 Period size: 8 Copynumber: 2.9 Consensus size: 8 15268712 CAGCCAGCCA 15268722 AAAGGATCC 1 AAAGGA-CC * 15268731 AAAGGACG 1 AAAGGACC 15268739 AAAGGAC 1 AAAGGAC 15268746 TAAGAGCAGG Statistics Matches: 14, Mismatches: 1, Indels: 1 0.88 0.06 0.06 Matches are distributed among these distances: 8 8 0.57 9 6 0.43 ACGTcount: A:0.50, C:0.17, G:0.29, T:0.04 Consensus pattern (8 bp): AAAGGACC Left flanking sequence: Indices 15268222 -- 15268721 AGGCATACAATCAATTTCTCGGCGGCAGCATAATTAAATAAAAAGTATGCAGAGAAAAATGAAAA TGAAGAAACCATCAGGATTCAGTTTTGCATAGCGAAGTAAATTATGTTTGATTGATGATTCGCCG TCCGAGATGAAACAAAAAGATATCAAAAAGAAGTGAGATACAAAGGGACGAGTGGATGAGTATGT GTGGCGAACCCAATCAAAATGGAAATTAATGGTAAGGAGTGTCTGTTACACGGCAAAGCCGCCTT GCGAATGGAACACGTTCCGGCTAATAGGCACGTACCACGCGCAGTTGCCAAGATGCGGCGATAAA GCCGGCTGGCAAATGAGTTAGTTGCCGCTTTTTCTGAGGACAGCTCACGGAATGCGGAAGTGCGG AAGTGAGGAAGTTCGGAAATGCTGGCCAGAAGTCAGTCCACCCCACTTGGCCAGACAACCAGTCA ACCAGCCAAGCAGTCACCCAATCACCAAGTCACCCCAGCCAGCCA Right flanking sequence: Indices 15268746 -- 15269245 TAAGAGCAGGACCAAATGAAGACGCCTGCCCTGCTGCTTAACGAAGGTAACAACGATTTTTATGG TTCTCGGTATTTGGCTTCACGGGTAATCGAAAGTTAAGGTAAACAGACCCCCAAGCCAGCAAAAA AAAAAAAAAATAAAAAAATAACCAAAATGAAATGGGGAAGGTAAAATTCAAGTAAATGGGTAAAA GAAGTGGAGCCACAGCTAAAGTAGCTGATTTTGGGGGATGGAAAGTGCTTGTTAAAGATTTTGAT ATGTAGCAGATAATCGAGAAATTCAACAATTTTTTTTATATTTGGTTATCATACTTGAAATATCT GGAAGAGTAATCAAACGGGAAGATTCAATGGAAGACAAAAGCAAAATGAAACATCATATGCTTTT TCTGCACTTGCACAATTTGTTTACACGGAATTAATTTAAGCGCATTTATCTGTCTTAGTGATTAC TACATCTTCTATTTGCTTGCTTTTGCCATCCATCAACTTGGCCAT Found at i:15268894 original size:8 final size:8 Alignment explanation
Indices: 15268871--15268896 Score: 45 Period size: 8 Copynumber: 3.2 Consensus size: 8 15268861 CCAAGCCAGC * 15268871 AAAAAAAA 1 AAAAAAAT 15268879 AAAAAAAT 1 AAAAAAAT 15268887 AAAAAAAT 1 AAAAAAAT 15268895 AA 1 AA 15268897 CCAAAATGAA Statistics Matches: 17, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 8 17 1.00 ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08 Consensus pattern (8 bp): AAAAAAAT Left flanking sequence: Indices 15268371 -- 15268870 ATATCAAAAAGAAGTGAGATACAAAGGGACGAGTGGATGAGTATGTGTGGCGAACCCAATCAAAA TGGAAATTAATGGTAAGGAGTGTCTGTTACACGGCAAAGCCGCCTTGCGAATGGAACACGTTCCG GCTAATAGGCACGTACCACGCGCAGTTGCCAAGATGCGGCGATAAAGCCGGCTGGCAAATGAGTT AGTTGCCGCTTTTTCTGAGGACAGCTCACGGAATGCGGAAGTGCGGAAGTGAGGAAGTTCGGAAA TGCTGGCCAGAAGTCAGTCCACCCCACTTGGCCAGACAACCAGTCAACCAGCCAAGCAGTCACCC AATCACCAAGTCACCCCAGCCAGCCAAAAGGATCCAAAGGACGAAAGGACTAAGAGCAGGACCAA ATGAAGACGCCTGCCCTGCTGCTTAACGAAGGTAACAACGATTTTTATGGTTCTCGGTATTTGGC TTCACGGGTAATCGAAAGTTAAGGTAAACAGACCCCCAAGCCAGC Right flanking sequence: Indices 15268897 -- 15269396 CCAAAATGAAATGGGGAAGGTAAAATTCAAGTAAATGGGTAAAAGAAGTGGAGCCACAGCTAAAG TAGCTGATTTTGGGGGATGGAAAGTGCTTGTTAAAGATTTTGATATGTAGCAGATAATCGAGAAA TTCAACAATTTTTTTTATATTTGGTTATCATACTTGAAATATCTGGAAGAGTAATCAAACGGGAA GATTCAATGGAAGACAAAAGCAAAATGAAACATCATATGCTTTTTCTGCACTTGCACAATTTGTT TACACGGAATTAATTTAAGCGCATTTATCTGTCTTAGTGATTACTACATCTTCTATTTGCTTGCT TTTGCCATCCATCAACTTGGCCATTATTCGCACAAAAGCGCATTGTAAAAACATGCAATGCTAAA CTCTTTTCGAGAACGATCAAATCTCGTCGCTTTTTCACACATCCCCGGCGGGCTGCTTTACATTC TCGGCAGCGTAATAACATTTATAAATAATCTCTATAAAACCTTTT Found at i:15269646 original size:8 final size:8 Alignment explanation
Indices: 15269633--15269648 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 15269623 GACAGGGTTA 15269633 CAATGCAG 1 CAATGCAG 15269641 CAATGCAG 1 CAATGCAG 15269649 TATATATATA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.25, G:0.25, T:0.12 Consensus pattern (8 bp): CAATGCAG Left flanking sequence: Indices 15269133 -- 15269632 TTTTCTGCACTTGCACAATTTGTTTACACGGAATTAATTTAAGCGCATTTATCTGTCTTAGTGAT TACTACATCTTCTATTTGCTTGCTTTTGCCATCCATCAACTTGGCCATTATTCGCACAAAAGCGC ATTGTAAAAACATGCAATGCTAAACTCTTTTCGAGAACGATCAAATCTCGTCGCTTTTTCACACA TCCCCGGCGGGCTGCTTTACATTCTCGGCAGCGTAATAACATTTATAAATAATCTCTATAAAACC TTTTTCAACTTGGCATCCATTACGGACACATTTGTCCGAAGCTCCGGACCCTGGAGTCCGCACAC CCGACTCGTTCGCACGAGGACACAGATCCTGGCAGACCATAAAATCAAATCAACTGAAAAGTAAC AAAAAACTTGGCCAACTAAATGCAATTTATGAAAAAGCACACACTATCGGTGTCGGTGAGTTCTT AGTGTGCATGCCTGCGTGCGTGTGTGTGTGTGAGTGACAGGGTTA Right flanking sequence: Indices 15269649 -- 15270148 TATATATATACATATAGTAACATAATATGCTTCTCATATTACGTTTACATACTTACACTAATTGT ACATACAATCTTGCACATGCATAAACACATGAAACCAGTTTACATTTTTACTTACACTTAAGCGC ATAATTTGTTGTGCATCCATACCGTTATTTTTCCGTTCTTTTTTGTACACATATACTGATTAGAC ATTCCCGTTTCTCGCGACTCACTTCGAGCCGATCAAAAACTCTGTACAGTCAGTCTTAAGCCGAC AACGAAGAAATAAAGATCTAAACTAAAAAATACCTCGTGTTGATTCTTTCAAATCCGAAACTTCT TTAAAGGCGTTGATCTTAGTCAAACGACGGATCATTTGTTCGACTCGAAAAGTAAAATACGTAAG TATATATATGTACATAAATGTAAGCGTGTATTGGTGTGCCCTGAGTGCATTCTCTGCGTTGGCAG CTCATCGTTGGACTCTGTAATTTCATTAGGGCAGTAGGGCAAACA Found at i:15271891 original size:8 final size:8 Alignment explanation
Indices: 15271874--15271918 Score: 62 Period size: 8 Copynumber: 5.6 Consensus size: 8 15271864 AACCCTCTGC 15271874 CCATCCAG 1 CCATCCAG * 15271882 CCAGCCAG 1 CCATCCAG 15271890 CCATCCAG 1 CCATCCAG * 15271898 CTATCCAG 1 CCATCCAG * * 15271906 CTATCCGG 1 CCATCCAG 15271914 CCATC 1 CCATC 15271919 AAAGTCACAA Statistics Matches: 32, Mismatches: 5, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 8 32 1.00 ACGTcount: A:0.22, C:0.47, G:0.16, T:0.16 Consensus pattern (8 bp): CCATCCAG Left flanking sequence: Indices 15271374 -- 15271873 CTTACTTTTGCCGCTTCTGCTTCAGTGTTTATTTTGTGAACACATTTCGAATGTGACTGGCCGAG TGTCATTTTATTCTCTCGTTCTCTATCCCCTCCCGCCTCTCCTTCTTATCCAGTCACTCTTTTCT TCCTCTCTTTCTTATCCTTAATCTGCCAGGATTATGTGTGAGAGTGTGTGTGTTTGAGTGTGTGT GAGTGTGCAAGTGCTTGTGTCATTGCCATTAATTAAACACGTTTATGGCTCGGCCAGTCGAAAGA GAAAAGCAAAGTGGCGAAAAAAAATAAAAATAAAGTTGGCTAGGGAAACAGAAATAAAAAGAAAA GTATAAGCACACACAGGACCAAAAATAAAAGCAGCCACTTTGCACATTAAATTATCGATTATGAC ATTCATTCACAGCTCCGAGCAAAAATAGCATCAACAGCAAAATCAGCTGCCAATCTGGGCAAAAA AACAAAAAAAAAAACCCAGATCCTCGAAAAAGCCAAACCCTCTGC Right flanking sequence: Indices 15271919 -- 15272418 AAAGTCACAAAACGACCAGCGGCGAGCAAACAAACAAACAAACAAGCAAGCAGGCAAGCCAACAT TTTCAGGCGGGCATACACGGCGTATGGGTAACGTCAGTGAGACAGTGCCGTCAATGGGGATTCCC CACGTCCATCGAATGCGTAAAGCACTGGTCAATGCGATAGTGACCACTAGAGAAGTGAACTGTGA AGTCTGCAATGCTGTTAACTTTAACTTTAACTTGTTTAGTTTACTTCTCAGAAGTGTTAGGCTTA TGCGTGAAATACATTTTGTAGTGAAAAGTCATAATTTGTTCGTTTCACGCTGATTTATTTGATTT GGTATCAAGTAAATTCCTTCTGCTAAGAAAGTACATTTTCCTTTATAAAAGTGATTTATCAGTTT GAAAGTACATTACATTTGCATGATTTATGACTTTGGGTACTTCTCAAACTTACTTAACTTTAGTT AAATAAAAAGTTGTTCAAACACATTTAGTTCTGTCGTTAGTAAGC Found at i:15273446 original size:8 final size:8 Alignment explanation
Indices: 15273433--15273448 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 15273423 TTAATCCCAC 15273433 ATCCAGAA 1 ATCCAGAA 15273441 ATCCAGAA 1 ATCCAGAA 15273449 GGGGAAAGCT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.25, G:0.12, T:0.12 Consensus pattern (8 bp): ATCCAGAA Left flanking sequence: Indices 15272933 -- 15273432 TGCAAACAAATAAATCCACAGAATTTCAATTTAAAACCATAATTAGTCAATGCCGTTGACTAATT AATTAGGAAAAAGTGGCAATTGCCAAACAAGTATTTATTTTAATTTAATAATTCAATTAATACTA TAATTAATTATTTCGTTTTTTCAATTTCAATTGAAATTAAGAAGCTACTTAGTAACTGATAAATT CAATTAAATGGTGGTTAACAAGAATAGCTTTAAATATATTTAAAGAAGATATGAAAACATGGACA ATTTAATAAAATATATAGTTTAAAATGAATAATTTAGGAATGTAAAAATACTAGGGCATTTAGTT TTTACAGTAAAATCTCTAAAAACAATACATTTATAACCTTTAAAAGCGATCAACTGCAACTTTCC ATGGCTTTTTTTCTACTTCCAAATCCGAACTTTACAAAATCGAATAAATATGAACTAAAAATCAT CATCGCTTTTCGAGTATATACATATTTTTCAACCTTTAATCCCAC Right flanking sequence: Indices 15273449 -- 15273948 GGGGAAAGCTGTTTCGCCAAAAAAAAAACTGATGATTTTCCAAACACAACAAAGGCACACACATG AGGGCCAGAGAAATACGCAAAATTATTGCCCGCATTCCGACACAACACCCATAATCACTCAATTT TCAAGCCAACCCCTCATCAAAATTCCCAGACCCCTTTCCTCGCCAGCAAATTCTCGACTTTGAGA ATGCCCATACAAGAAAATATCATTAGGAGCCCGAACTGAAAAGGGAAAACTTTATTAATAATGGA GCTAATAGAGTTTTGAGGACCAGGCCAGCCCAGTCCACACCCCCCCAAAATTGCACCCCCACCAC CCCAAAAAAAAAAAAAAAAAAAAAATTACAGCCAAAGAAAAAAAATGAGGAAAGCAAAAGGAAAA TTTGGTCAGTGGCTCAAGGAGCTGTAAAAATAACAAGGCGCAGACAAGAGGCGGCAGTGCCAAAA AGGCCTAAATCGAGGGTGGCACAAGGACTACAAGGACTACTGTCA Found at i:15273938 original size:9 final size:9 Alignment explanation
Indices: 15273924--15273943 Score: 40 Period size: 9 Copynumber: 2.2 Consensus size: 9 15273914 CGAGGGTGGC 15273924 ACAAGGACT 1 ACAAGGACT 15273933 ACAAGGACT 1 ACAAGGACT 15273942 AC 1 AC 15273944 TGTCACACAG Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.45, C:0.25, G:0.20, T:0.10 Consensus pattern (9 bp): ACAAGGACT Left flanking sequence: Indices 15273424 -- 15273923 TAATCCCACATCCAGAAATCCAGAAGGGGAAAGCTGTTTCGCCAAAAAAAAAACTGATGATTTTC CAAACACAACAAAGGCACACACATGAGGGCCAGAGAAATACGCAAAATTATTGCCCGCATTCCGA CACAACACCCATAATCACTCAATTTTCAAGCCAACCCCTCATCAAAATTCCCAGACCCCTTTCCT CGCCAGCAAATTCTCGACTTTGAGAATGCCCATACAAGAAAATATCATTAGGAGCCCGAACTGAA AAGGGAAAACTTTATTAATAATGGAGCTAATAGAGTTTTGAGGACCAGGCCAGCCCAGTCCACAC CCCCCCAAAATTGCACCCCCACCACCCCAAAAAAAAAAAAAAAAAAAAAATTACAGCCAAAGAAA AAAAATGAGGAAAGCAAAAGGAAAATTTGGTCAGTGGCTCAAGGAGCTGTAAAAATAACAAGGCG CAGACAAGAGGCGGCAGTGCCAAAAAGGCCTAAATCGAGGGTGGC Right flanking sequence: Indices 15273944 -- 15274443 TGTCACACAGACAGGGACACTAGCACACACACACTAGCACACCATCGGCGCACACACACCAAAGG CGATTGAGTAATTTTTTTTTTTTTTTTTTTGGAACCCCACCGCCCCCCAACCACCACACAACTTC ATTAGATGAATTGGGATGTTGGGCTGTTCTTCGGGCGTTTCTGGCGGAGATTGGGACGTGGAATA TCGGTGTTATATAAATTATATGAATAAAAATGCTTAAATGCGGCCAAAAATTAAATGTTGGCATT AGTTTTGCGTAATCTGTCAACTAATTGGCACAGAAAAACACACTGGCACACATGGAAAAGTTGAC TCGACTCGAGTTGGGTCACAAATTGGATTAGGACCAAGGACTGAATGGTTTCACACTTGGCAAAT GGGATAAACATGAGAAACAGACTGGAAAATACCCTGGAAACATATTCGAAAGCAATGCAAACATA TACAAAATGTTGATTTAGTTACATATCCTGCTGTTTTTGGTCACA i:15273984 original size:8 final size:8 Alignment explanation
Indices: 15273960--15273985 Score: 38 Period size: 8 Copynumber: 3.5 Consensus size: 8 15273950 ACAGACAGGG 15273960 ACACTAGC 1 ACACTAGC 15273968 ACAC-A-C 1 ACACTAGC 15273974 ACACTAGC 1 ACACTAGC 15273982 ACAC 1 ACAC 15273986 CATCGGCGCA Statistics Matches: 16, Mismatches: 0, Indels: 4 0.80 0.00 0.20 Matches are distributed among these distances: 6 5 0.31 7 2 0.12 8 9 0.56 ACGTcount: A:0.42, C:0.42, G:0.08, T:0.08 Consensus pattern (8 bp): ACACTAGC Left flanking sequence: Indices 15273460 -- 15273959 TTTCGCCAAAAAAAAAACTGATGATTTTCCAAACACAACAAAGGCACACACATGAGGGCCAGAGA AATACGCAAAATTATTGCCCGCATTCCGACACAACACCCATAATCACTCAATTTTCAAGCCAACC CCTCATCAAAATTCCCAGACCCCTTTCCTCGCCAGCAAATTCTCGACTTTGAGAATGCCCATACA AGAAAATATCATTAGGAGCCCGAACTGAAAAGGGAAAACTTTATTAATAATGGAGCTAATAGAGT TTTGAGGACCAGGCCAGCCCAGTCCACACCCCCCCAAAATTGCACCCCCACCACCCCAAAAAAAA AAAAAAAAAAAAAATTACAGCCAAAGAAAAAAAATGAGGAAAGCAAAAGGAAAATTTGGTCAGTG GCTCAAGGAGCTGTAAAAATAACAAGGCGCAGACAAGAGGCGGCAGTGCCAAAAAGGCCTAAATC GAGGGTGGCACAAGGACTACAAGGACTACTGTCACACAGACAGGG Right flanking sequence: Indices 15273986 -- 15274485 CATCGGCGCACACACACCAAAGGCGATTGAGTAATTTTTTTTTTTTTTTTTTTGGAACCCCACCG CCCCCCAACCACCACACAACTTCATTAGATGAATTGGGATGTTGGGCTGTTCTTCGGGCGTTTCT GGCGGAGATTGGGACGTGGAATATCGGTGTTATATAAATTATATGAATAAAAATGCTTAAATGCG GCCAAAAATTAAATGTTGGCATTAGTTTTGCGTAATCTGTCAACTAATTGGCACAGAAAAACACA CTGGCACACATGGAAAAGTTGACTCGACTCGAGTTGGGTCACAAATTGGATTAGGACCAAGGACT GAATGGTTTCACACTTGGCAAATGGGATAAACATGAGAAACAGACTGGAAAATACCCTGGAAACA TATTCGAAAGCAATGCAAACATATACAAAATGTTGATTTAGTTACATATCCTGCTGTTTTTGGTC ACATTTCACGCACATTTGCAGCAGTCCTTCATCCTTTTGTTGTGG Found at i:15274101 original size:8 final size:8 Alignment explanation
Indices: 15274084--15274101 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 15274074 ATTAGATGAA 15274084 TTGGGATG 1 TTGGGATG * 15274092 TTGGGCTG 1 TTGGGATG 15274100 TT 1 TT 15274102 CTTCGGGCGT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.06, C:0.06, G:0.44, T:0.44 Consensus pattern (8 bp): TTGGGATG Left flanking sequence: Indices 15273584 -- 15274083 CCAACCCCTCATCAAAATTCCCAGACCCCTTTCCTCGCCAGCAAATTCTCGACTTTGAGAATGCC CATACAAGAAAATATCATTAGGAGCCCGAACTGAAAAGGGAAAACTTTATTAATAATGGAGCTAA TAGAGTTTTGAGGACCAGGCCAGCCCAGTCCACACCCCCCCAAAATTGCACCCCCACCACCCCAA AAAAAAAAAAAAAAAAAAAATTACAGCCAAAGAAAAAAAATGAGGAAAGCAAAAGGAAAATTTGG TCAGTGGCTCAAGGAGCTGTAAAAATAACAAGGCGCAGACAAGAGGCGGCAGTGCCAAAAAGGCC TAAATCGAGGGTGGCACAAGGACTACAAGGACTACTGTCACACAGACAGGGACACTAGCACACAC ACACTAGCACACCATCGGCGCACACACACCAAAGGCGATTGAGTAATTTTTTTTTTTTTTTTTTT GGAACCCCACCGCCCCCCAACCACCACACAACTTCATTAGATGAA Right flanking sequence: Indices 15274102 -- 15274601 CTTCGGGCGTTTCTGGCGGAGATTGGGACGTGGAATATCGGTGTTATATAAATTATATGAATAAA AATGCTTAAATGCGGCCAAAAATTAAATGTTGGCATTAGTTTTGCGTAATCTGTCAACTAATTGG CACAGAAAAACACACTGGCACACATGGAAAAGTTGACTCGACTCGAGTTGGGTCACAAATTGGAT TAGGACCAAGGACTGAATGGTTTCACACTTGGCAAATGGGATAAACATGAGAAACAGACTGGAAA ATACCCTGGAAACATATTCGAAAGCAATGCAAACATATACAAAATGTTGATTTAGTTACATATCC TGCTGTTTTTGGTCACATTTCACGCACATTTGCAGCAGTCCTTCATCCTTTTGTTGTGGTTGTTG TCGATGCTGTTGTTGTTGTTGTTATTGTTGGCTATTAAATATATATATTTCTATATATATATATA TATTTGTATATGTTGTTGTGGTTGTTCTGTTCGCACTCCTGTTCA Found at i:15274159 original size:9 final size:9 Alignment explanation
Indices: 15274145--15274163 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 15274135 AATATCGGTG 15274145 TTATATAAA 1 TTATATAAA * 15274154 TTATATGAA 1 TTATATAAA 15274163 T 1 T 15274164 AAAAATGCTT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47 Consensus pattern (9 bp): TTATATAAA Left flanking sequence: Indices 15273645 -- 15274144 TGCCCATACAAGAAAATATCATTAGGAGCCCGAACTGAAAAGGGAAAACTTTATTAATAATGGAG CTAATAGAGTTTTGAGGACCAGGCCAGCCCAGTCCACACCCCCCCAAAATTGCACCCCCACCACC CCAAAAAAAAAAAAAAAAAAAAAATTACAGCCAAAGAAAAAAAATGAGGAAAGCAAAAGGAAAAT TTGGTCAGTGGCTCAAGGAGCTGTAAAAATAACAAGGCGCAGACAAGAGGCGGCAGTGCCAAAAA GGCCTAAATCGAGGGTGGCACAAGGACTACAAGGACTACTGTCACACAGACAGGGACACTAGCAC ACACACACTAGCACACCATCGGCGCACACACACCAAAGGCGATTGAGTAATTTTTTTTTTTTTTT TTTTGGAACCCCACCGCCCCCCAACCACCACACAACTTCATTAGATGAATTGGGATGTTGGGCTG TTCTTCGGGCGTTTCTGGCGGAGATTGGGACGTGGAATATCGGTG Right flanking sequence: Indices 15274164 -- 15274663 AAAAATGCTTAAATGCGGCCAAAAATTAAATGTTGGCATTAGTTTTGCGTAATCTGTCAACTAAT TGGCACAGAAAAACACACTGGCACACATGGAAAAGTTGACTCGACTCGAGTTGGGTCACAAATTG GATTAGGACCAAGGACTGAATGGTTTCACACTTGGCAAATGGGATAAACATGAGAAACAGACTGG AAAATACCCTGGAAACATATTCGAAAGCAATGCAAACATATACAAAATGTTGATTTAGTTACATA TCCTGCTGTTTTTGGTCACATTTCACGCACATTTGCAGCAGTCCTTCATCCTTTTGTTGTGGTTG TTGTCGATGCTGTTGTTGTTGTTGTTATTGTTGGCTATTAAATATATATATTTCTATATATATAT ATATATTTGTATATGTTGTTGTGGTTGTTCTGTTCGCACTCCTGTTCAAACCGCACAAGAACAAA AAATCTCAAAAAAATTAACAATTGCACGTAGCGTATTTATCCCTC Found at i:15274546 original size:10 final size:10 Alignment explanation
Indices: 15274531--15274567 Score: 53 Period size: 10 Copynumber: 3.7 Consensus size: 10 15274521 GGCTATTAAA 15274531 TATATATATT 1 TATATATATT * * 15274541 TCTATATATA 1 TATATATATT 15274551 TATATATATT 1 TATATATATT * 15274561 TGTATAT 1 TATATAT 15274568 GTTGTTGTGG Statistics Matches: 22, Mismatches: 5, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 10 22 1.00 ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57 Consensus pattern (10 bp): TATATATATT Left flanking sequence: Indices 15274031 -- 15274530 TTTTTTTTGGAACCCCACCGCCCCCCAACCACCACACAACTTCATTAGATGAATTGGGATGTTGG GCTGTTCTTCGGGCGTTTCTGGCGGAGATTGGGACGTGGAATATCGGTGTTATATAAATTATATG AATAAAAATGCTTAAATGCGGCCAAAAATTAAATGTTGGCATTAGTTTTGCGTAATCTGTCAACT AATTGGCACAGAAAAACACACTGGCACACATGGAAAAGTTGACTCGACTCGAGTTGGGTCACAAA TTGGATTAGGACCAAGGACTGAATGGTTTCACACTTGGCAAATGGGATAAACATGAGAAACAGAC TGGAAAATACCCTGGAAACATATTCGAAAGCAATGCAAACATATACAAAATGTTGATTTAGTTAC ATATCCTGCTGTTTTTGGTCACATTTCACGCACATTTGCAGCAGTCCTTCATCCTTTTGTTGTGG TTGTTGTCGATGCTGTTGTTGTTGTTGTTATTGTTGGCTATTAAA Right flanking sequence: Indices 15274568 -- 15275067 GTTGTTGTGGTTGTTCTGTTCGCACTCCTGTTCAAACCGCACAAGAACAAAAAATCTCAAAAAAA TTAACAATTGCACGTAGCGTATTTATCCCTCTTTGCATTTTTCCTTCTTTTTTTGTCGCAGGCAC ATTTATATTAATATATATTTTCTTCAGCTTAGCTGGAAGGGTTCCGGTTTATTCTTTTGAATTTT CCTTAATTTTCTTCTTTCAATTTTTATTTTAAATTTTAAATTTTTTTTTTTTGGCACTTGAGCAC TTTGCTTATTATATTTTTCTTGCGCTTATTTACTTTGTTTTAGCTGCTGGCTAAATGTTGCAATG GAATTCGGGGAACAAGAACAAAAAAATATTTGTCGAGGGCGGTCCTGGCGCTGGAATCCTTCGAT TCCGCTTGCCAGAGTGTTCGTTGCGGACTCAGATTCTAATTCAGAATCAAATGCAGATTCAGTTT CGGATTTGGATTCGGTTTCGAGTTGGTTTTGGTTGTGGACTTTTG Found at i:15274798 original size:7 final size:7 Alignment explanation
Indices: 15274777--15274806 Score: 39 Period size: 7 Copynumber: 4.4 Consensus size: 7 15274767 AATTTTCTTC * 15274777 TTTCAAT 1 TTTAAAT * 15274784 TTT-TAT 1 TTTAAAT 15274790 TTTAAAT 1 TTTAAAT 15274797 TTTAAAT 1 TTTAAAT 15274804 TTT 1 TTT 15274807 TTTTTTTTGG Statistics Matches: 20, Mismatches: 2, Indels: 2 0.83 0.08 0.08 Matches are distributed among these distances: 6 5 0.25 7 15 0.75 ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67 Consensus pattern (7 bp): TTTAAAT Left flanking sequence: Indices 15274277 -- 15274776 AGTTGGGTCACAAATTGGATTAGGACCAAGGACTGAATGGTTTCACACTTGGCAAATGGGATAAA CATGAGAAACAGACTGGAAAATACCCTGGAAACATATTCGAAAGCAATGCAAACATATACAAAAT GTTGATTTAGTTACATATCCTGCTGTTTTTGGTCACATTTCACGCACATTTGCAGCAGTCCTTCA TCCTTTTGTTGTGGTTGTTGTCGATGCTGTTGTTGTTGTTGTTATTGTTGGCTATTAAATATATA TATTTCTATATATATATATATATTTGTATATGTTGTTGTGGTTGTTCTGTTCGCACTCCTGTTCA AACCGCACAAGAACAAAAAATCTCAAAAAAATTAACAATTGCACGTAGCGTATTTATCCCTCTTT GCATTTTTCCTTCTTTTTTTGTCGCAGGCACATTTATATTAATATATATTTTCTTCAGCTTAGCT GGAAGGGTTCCGGTTTATTCTTTTGAATTTTCCTTAATTTTCTTC Right flanking sequence: Indices 15274807 -- 15275306 TTTTTTTTGGCACTTGAGCACTTTGCTTATTATATTTTTCTTGCGCTTATTTACTTTGTTTTAGC TGCTGGCTAAATGTTGCAATGGAATTCGGGGAACAAGAACAAAAAAATATTTGTCGAGGGCGGTC CTGGCGCTGGAATCCTTCGATTCCGCTTGCCAGAGTGTTCGTTGCGGACTCAGATTCTAATTCAG AATCAAATGCAGATTCAGTTTCGGATTTGGATTCGGTTTCGAGTTGGTTTTGGTTGTGGACTTTT GGCTGTGGCTGTGGCACGACTGAAGAGGACTGAAAGACCACTCAGAGGGCGATGATGATGGGAGG CGAGCGCACGCTGGCTCCGCACCACATGACCGCACTACACGATTGACAGTTTGGCACTGAGCAGG AGCAGGACCACGGCCAGGACGACTGGGCCAGGACCACAGCTTATCAGAGCCGAGCGGAAACGAGC CGACACGAAGCACCGAAGGCCCGAAGGCCTGACGCCCGTCCTCCC Found at i:15275269 original size:10 final size:10 Alignment explanation
Indices: 15275247--15275269 Score: 32 Period size: 10 Copynumber: 2.3 Consensus size: 10 15275237 TTATCAGAGC * 15275247 CGAGCGGAAA 1 CGAGCCGAAA * 15275257 CGAGCCGACA 1 CGAGCCGAAA 15275267 CGA 1 CGA 15275270 AGCACCGAAG Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.35, C:0.30, G:0.35, T:0.00 Consensus pattern (10 bp): CGAGCCGAAA Left flanking sequence: Indices 15274747 -- 15275246 TATTCTTTTGAATTTTCCTTAATTTTCTTCTTTCAATTTTTATTTTAAATTTTAAATTTTTTTTT TTTGGCACTTGAGCACTTTGCTTATTATATTTTTCTTGCGCTTATTTACTTTGTTTTAGCTGCTG GCTAAATGTTGCAATGGAATTCGGGGAACAAGAACAAAAAAATATTTGTCGAGGGCGGTCCTGGC GCTGGAATCCTTCGATTCCGCTTGCCAGAGTGTTCGTTGCGGACTCAGATTCTAATTCAGAATCA AATGCAGATTCAGTTTCGGATTTGGATTCGGTTTCGAGTTGGTTTTGGTTGTGGACTTTTGGCTG TGGCTGTGGCACGACTGAAGAGGACTGAAAGACCACTCAGAGGGCGATGATGATGGGAGGCGAGC GCACGCTGGCTCCGCACCACATGACCGCACTACACGATTGACAGTTTGGCACTGAGCAGGAGCAG GACCACGGCCAGGACGACTGGGCCAGGACCACAGCTTATCAGAGC Right flanking sequence: Indices 15275270 -- 15275769 AGCACCGAAGGCCCGAAGGCCTGACGCCCGTCCTCCCCCAATGCCCCGCCGAATGCCCCCGAACA ACCGAGAGTCCTTTCCTGAACGACTGGCGATGGATGAGCGGGGGGATGATCGGCATCCTGGCGGT TGGGCTGCAAAGGAAGGAGGGTGGGGGGAAGTGGGGTCTCTCGCTTAAGGATATGCGCGACTGTT ACAAAAAAATGTTTGTAGCCAGGCCCAAAGCTCGGCCCTGTCGCCTCCGCATCGCCGCCTGCCGC ACATCCTTGCCCTCCGCGCACTCACATGTTCATTGAGGAAAGCCCAGCATCAGCAGGAGCCGAAG GAGGAGCAAATGGAGGAGCAAGGGCAGGCGGTGGAGCAGCACCATCAGCATGGGCACAGGACTCC AGGCGAAGCGAAAACCAACGAAGTGAACCGAACCAAGCCAAGCCAAGCCAAGCCAAGCCGAAACC GAGGCGGTCCAAAAACGAGTGCCGAGCCCAATTGCGAGCCGAAAG Found at i:15275285 original size:8 final size:8 Alignment explanation
Indices: 15275274--15275290 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 15275264 ACACGAAGCA 15275274 CCGAAGGC 1 CCGAAGGC 15275282 CCGAAGGC 1 CCGAAGGC 15275290 C 1 C 15275291 TGACGCCCGT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.24, C:0.41, G:0.35, T:0.00 Consensus pattern (8 bp): CCGAAGGC Left flanking sequence: Indices 15274774 -- 15275273 TTCTTTCAATTTTTATTTTAAATTTTAAATTTTTTTTTTTTGGCACTTGAGCACTTTGCTTATTA TATTTTTCTTGCGCTTATTTACTTTGTTTTAGCTGCTGGCTAAATGTTGCAATGGAATTCGGGGA ACAAGAACAAAAAAATATTTGTCGAGGGCGGTCCTGGCGCTGGAATCCTTCGATTCCGCTTGCCA GAGTGTTCGTTGCGGACTCAGATTCTAATTCAGAATCAAATGCAGATTCAGTTTCGGATTTGGAT TCGGTTTCGAGTTGGTTTTGGTTGTGGACTTTTGGCTGTGGCTGTGGCACGACTGAAGAGGACTG AAAGACCACTCAGAGGGCGATGATGATGGGAGGCGAGCGCACGCTGGCTCCGCACCACATGACCG CACTACACGATTGACAGTTTGGCACTGAGCAGGAGCAGGACCACGGCCAGGACGACTGGGCCAGG ACCACAGCTTATCAGAGCCGAGCGGAAACGAGCCGACACGAAGCA Right flanking sequence: Indices 15275291 -- 15275790 TGACGCCCGTCCTCCCCCAATGCCCCGCCGAATGCCCCCGAACAACCGAGAGTCCTTTCCTGAAC GACTGGCGATGGATGAGCGGGGGGATGATCGGCATCCTGGCGGTTGGGCTGCAAAGGAAGGAGGG TGGGGGGAAGTGGGGTCTCTCGCTTAAGGATATGCGCGACTGTTACAAAAAAATGTTTGTAGCCA GGCCCAAAGCTCGGCCCTGTCGCCTCCGCATCGCCGCCTGCCGCACATCCTTGCCCTCCGCGCAC TCACATGTTCATTGAGGAAAGCCCAGCATCAGCAGGAGCCGAAGGAGGAGCAAATGGAGGAGCAA GGGCAGGCGGTGGAGCAGCACCATCAGCATGGGCACAGGACTCCAGGCGAAGCGAAAACCAACGA AGTGAACCGAACCAAGCCAAGCCAAGCCAAGCCAAGCCGAAACCGAGGCGGTCCAAAAACGAGTG CCGAGCCCAATTGCGAGCCGAAAGGACACTACTACTGCTCCTCAG Found at i:15276754 original size:9 final size:9 Alignment explanation
Indices: 15276740--15276760 Score: 42 Period size: 9 Copynumber: 2.3 Consensus size: 9 15276730 CCACAGCTCC 15276740 ACAGCAAGA 1 ACAGCAAGA 15276749 ACAGCAAGA 1 ACAGCAAGA 15276758 ACA 1 ACA 15276761 ACAGGAGCAA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.57, C:0.24, G:0.19, T:0.00 Consensus pattern (9 bp): ACAGCAAGA Left flanking sequence: Indices 15276240 -- 15276739 GTATGCAATGCTCAAAAATCATAAATTTATGATTTAAGAAATGTTTTGTTTTAAACAAGTCAAAG TTAATTTGAAAACTACTAAGTCTGTTATTCTGTCTGTTCTAAATGATTTGAACAACGTTTTATAA ATGAAATCATGTGCCAGCTAGTATATCTAAACTAATGTGTATTTAAAGTCCCACTCAGATTTCCT CAAGTCAAAATAGTTTTATGAAAATGGTCAGTGAAATGTCAACTCCGCGGGGACATGAAAGTTTC CATCCCGACCACCTGCATAGCACATTAAAGTTGCAGGCATCCCAGCTCCATTTGGCAGATGAAAC TGGTCGGGATTTCCAATTAAGACAATAAGAGAATCATACCCGAGGACGGGCCAAAGAATAACCGA AGTGCTCGCTGGTGGAATTGAATTGAATAAAGATAAAAAAAATATTTGTCTGCCGCGGGCGATGC GCATTTCCCAGCGGGGACAAAGCCAACAGAAGACCCCACAGCTCC Right flanking sequence: Indices 15276761 -- 15277260 ACAGGAGCAAGGAGAACAGCACCAGACCAGCCAGCACCACAGATAGAAACAGAAATGGTGCACTG AGAACAAATTGGACACCTTTAGCTAGCAACATTTCGCAATAACAATGGAACTGATATTGTGGTAT GTGATCGCTGATCATATATAACTTTAAAATTAATTTTTTTATTTTTTAAATATTATTCTAAATAT TTGAATAGAAAAAAAATCTACAATTAAGGTACTTTAAAAGAAATGGCATATGAGATATGCTGTTA GCATTAATTTACTCTGTATCATTGAACAATTTAATTAAAAACAAAATGTATTTTAAATTTGCCAA CAATAATTACATTGCATTAATGCTGTTTTGGAATAATGACTTCTCTGGCCTTTGAATTTTACATA AATGCTTGGACTTTTAAATTTGTTCTAGAATATATTATAAATTGATGTATTTATATTTAGCTTTT TCAAATACACCTATTAACATTTGTAATTAATTTCTTACTTATCTT Found at i:15276937 original size:7 final size:7 Alignment explanation
Indices: 15276925--15276938 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 15276915 TAAAATTAAT 15276925 TTTTTTA 1 TTTTTTA 15276932 TTTTTTA 1 TTTTTTA 15276939 AATATTATTC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86 Consensus pattern (7 bp): TTTTTTA Left flanking sequence: Indices 15276425 -- 15276924 CAGATTTCCTCAAGTCAAAATAGTTTTATGAAAATGGTCAGTGAAATGTCAACTCCGCGGGGACA TGAAAGTTTCCATCCCGACCACCTGCATAGCACATTAAAGTTGCAGGCATCCCAGCTCCATTTGG CAGATGAAACTGGTCGGGATTTCCAATTAAGACAATAAGAGAATCATACCCGAGGACGGGCCAAA GAATAACCGAAGTGCTCGCTGGTGGAATTGAATTGAATAAAGATAAAAAAAATATTTGTCTGCCG CGGGCGATGCGCATTTCCCAGCGGGGACAAAGCCAACAGAAGACCCCACAGCTCCACAGCAAGAA CAGCAAGAACAACAGGAGCAAGGAGAACAGCACCAGACCAGCCAGCACCACAGATAGAAACAGAA ATGGTGCACTGAGAACAAATTGGACACCTTTAGCTAGCAACATTTCGCAATAACAATGGAACTGA TATTGTGGTATGTGATCGCTGATCATATATAACTTTAAAATTAAT Right flanking sequence: Indices 15276939 -- 15277438 AATATTATTCTAAATATTTGAATAGAAAAAAAATCTACAATTAAGGTACTTTAAAAGAAATGGCA TATGAGATATGCTGTTAGCATTAATTTACTCTGTATCATTGAACAATTTAATTAAAAACAAAATG TATTTTAAATTTGCCAACAATAATTACATTGCATTAATGCTGTTTTGGAATAATGACTTCTCTGG CCTTTGAATTTTACATAAATGCTTGGACTTTTAAATTTGTTCTAGAATATATTATAAATTGATGT ATTTATATTTAGCTTTTTCAAATACACCTATTAACATTTGTAATTAATTTCTTACTTATCTTTGT GTTGTACCCTATTTATTTTTCTCAGTGCTGGGACGAAGGAAGCGCCAAGTGCCATGTGCGGCGCT TTGTGTCGACGTCTGTGTGAGTGCGGCCTTGCGGTGTCCCTGTGTGTGAGCAAGTATGTGTGTAT GAGTGTGTGTCTGTGAGCGGTGGTCCTGTGAGAGGAATGGTGCGG Found at i:15277322 original size:7 final size:7 Alignment explanation
Indices: 15277303--15277322 Score: 26 Period size: 7 Copynumber: 2.9 Consensus size: 7 15277293 GGGACGAAGG * 15277303 AAGCGCC 1 AAGTGCC 15277310 AAGTGCC 1 AAGTGCC * 15277317 ATGTGC 1 AAGTGC 15277323 GGCGCTTTGT Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.25, C:0.30, G:0.30, T:0.15 Consensus pattern (7 bp): AAGTGCC Left flanking sequence: Indices 15276803 -- 15277302 ATAGAAACAGAAATGGTGCACTGAGAACAAATTGGACACCTTTAGCTAGCAACATTTCGCAATAA CAATGGAACTGATATTGTGGTATGTGATCGCTGATCATATATAACTTTAAAATTAATTTTTTTAT TTTTTAAATATTATTCTAAATATTTGAATAGAAAAAAAATCTACAATTAAGGTACTTTAAAAGAA ATGGCATATGAGATATGCTGTTAGCATTAATTTACTCTGTATCATTGAACAATTTAATTAAAAAC AAAATGTATTTTAAATTTGCCAACAATAATTACATTGCATTAATGCTGTTTTGGAATAATGACTT CTCTGGCCTTTGAATTTTACATAAATGCTTGGACTTTTAAATTTGTTCTAGAATATATTATAAAT TGATGTATTTATATTTAGCTTTTTCAAATACACCTATTAACATTTGTAATTAATTTCTTACTTAT CTTTGTGTTGTACCCTATTTATTTTTCTCAGTGCTGGGACGAAGG Right flanking sequence: Indices 15277323 -- 15277822 GGCGCTTTGTGTCGACGTCTGTGTGAGTGCGGCCTTGCGGTGTCCCTGTGTGTGAGCAAGTATGT GTGTATGAGTGTGTGTCTGTGAGCGGTGGTCCTGTGAGAGGAATGGTGCGGGGTGGAGGGGCTAA GGACGAGAGGCAGCATCAGCAGCAGTAGAACCACGACGAGAGCACAAACAGAAACGGCACAAACA GCAAACGTGATGAGCGCATGTGTTTTATCTTCAATCTCAGCTGAAATCATCTGCACCACCACCAC CACCGCCCCCTACCAACACCCCACCACCCCTTGCCCACGTCAAGTAGTAAAGGGAAAGCCCCTCC CTCCGTTCGGCCCACACCCCTGTCGCATTATGAAGGGCAATAGGTTGTGGGCGACTCCCGTGGAC TCGGGTCCACCATCGGTGTCGGGATAAAGTTCGGGTTGCCGGGTCGACAAACGCCTTCGGCTGCG ACTTAGCTCTGACCAAGTCACTAAGCCAGTCAACCCCGCTATCTG Found at