TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_2L assembled 2004-4-6 md5checksum:29037f68a520aa000acffb8837e59820 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 22407834 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Warning! 100 characters in sequence are not A, C, G, or T Found at i: i:5441052 original size:10 final size:10 Alignment explanation
Indices: 5441034--5441054 Score: 35 Period size: 10 Copynumber: 2.1 Consensus size: 10 5441024 TCACTTTGCC 5441034 TACACATATA 1 TACACATATA * 5441044 TACATATATA 1 TACACATATA 5441054 T 1 T 5441055 TTATATGGCC Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38 Consensus pattern (10 bp): TACACATATA Left flanking sequence: Indices 5440534 -- 5441033 TATCACAAAAATGCGCTTAATTTCGCTTATCGGCTTGAGAGGGAAATATAGGAAATGGTGGAAAA ACAGATGACTAAAAGCATTTGGCCTCCGTAATGATGATGATTATTGGTTGATGACCAAAGAGCCT GAGTGGGCGGATGGCAAGGTGGTCGAGGGAGTGAAGTAATGGCCATATGCTGTAGGCCAGAAAAT TAAATGGCAATAGAGATAAAATGGTGGAGTGGATAAGGCAATAAGTTTAGCTATATTTCCGATTA GAAGTTAGTCATATGAATGTTGAAATATATCTTAACCGCCTTACTTAATTCATTAAATTGGTGAT CGTACAATTTCTATTCACTCGAGTCATAGATCAATCGCTCAACCAGCCGTATTCATTCGCGTTTT AGCATATAATTTCCACATTTACTTAATTACACACATCTGGCAGTATGCCATTTTCATTTCAATTT CCAGCCGAGTTCATTGTCTCCTCGAAGAGCTACTCTCACTTTGCC Right flanking sequence: Indices 5441055 -- 5441554 TTATATGGCCAAGTCTGAGTCGAACGAACAGCTTTCGCCATTGAATTGAATGGATCCAAAGTAGT TGGCAAATTAGCAACAGCTACAATCACAATCAGCAGAGAGTTTTATTTGTAAGCTCAATCATATG ATCGTGTGAAATGATTTCGATCATTGGCCATCTATCAATGTTTCGCTGTATCCATTCGATTCGAT TCGATTCGTTTCGTTTGGCTTATAATGAAACCCAACGGCTGCCAACGTTTAATTAACTTGATAAA TCGTTTGTAAATTTCTTAATTATTACGTAGCCGTCGTGTGGTCAGCCAGCCCCTAAGTACGGCAA TAATTTAAACAGCTTTACCTTGCCATTCACCTTAGCAGCTCATGTGTGCTTATTCACATTTATTT ATTAATTTTTGTGATTAATTTAATGCGCGACGACAAACGAAATCGTTGAGTGTCGCTAATTGTTT ATGAGGTGCACAACAACGAAGGCAATTATATGCAAACACACACGT Found at i:5441060 original size:8 final size:8 Alignment explanation
Indices: 5441037--5441053 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 5441027 CTTTGCCTAC 5441037 ACATATAT 1 ACATATAT 5441045 ACATATAT 1 ACATATAT 5441053 A 1 A 5441054 TTTATATGGC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35 Consensus pattern (8 bp): ACATATAT Left flanking sequence: Indices 5440537 -- 5441036 CACAAAAATGCGCTTAATTTCGCTTATCGGCTTGAGAGGGAAATATAGGAAATGGTGGAAAAACA GATGACTAAAAGCATTTGGCCTCCGTAATGATGATGATTATTGGTTGATGACCAAAGAGCCTGAG TGGGCGGATGGCAAGGTGGTCGAGGGAGTGAAGTAATGGCCATATGCTGTAGGCCAGAAAATTAA ATGGCAATAGAGATAAAATGGTGGAGTGGATAAGGCAATAAGTTTAGCTATATTTCCGATTAGAA GTTAGTCATATGAATGTTGAAATATATCTTAACCGCCTTACTTAATTCATTAAATTGGTGATCGT ACAATTTCTATTCACTCGAGTCATAGATCAATCGCTCAACCAGCCGTATTCATTCGCGTTTTAGC ATATAATTTCCACATTTACTTAATTACACACATCTGGCAGTATGCCATTTTCATTTCAATTTCCA GCCGAGTTCATTGTCTCCTCGAAGAGCTACTCTCACTTTGCCTAC Right flanking sequence: Indices 5441054 -- 5441553 TTTATATGGCCAAGTCTGAGTCGAACGAACAGCTTTCGCCATTGAATTGAATGGATCCAAAGTAG TTGGCAAATTAGCAACAGCTACAATCACAATCAGCAGAGAGTTTTATTTGTAAGCTCAATCATAT GATCGTGTGAAATGATTTCGATCATTGGCCATCTATCAATGTTTCGCTGTATCCATTCGATTCGA TTCGATTCGTTTCGTTTGGCTTATAATGAAACCCAACGGCTGCCAACGTTTAATTAACTTGATAA ATCGTTTGTAAATTTCTTAATTATTACGTAGCCGTCGTGTGGTCAGCCAGCCCCTAAGTACGGCA ATAATTTAAACAGCTTTACCTTGCCATTCACCTTAGCAGCTCATGTGTGCTTATTCACATTTATT TATTAATTTTTGTGATTAATTTAATGCGCGACGACAAACGAAATCGTTGAGTGTCGCTAATTGTT TATGAGGTGCACAACAACGAAGGCAATTATATGCAAACACACACG Found at i:5444480 original size:7 final size:7 Alignment explanation
Indices: 5444468--5444494 Score: 40 Period size: 7 Copynumber: 3.9 Consensus size: 7 5444458 GTGGGGACAC 5444468 TTCTGAT 1 TTCTGAT 5444475 TTCTGAT 1 TTCTGAT * * 5444482 CTCTGAG 1 TTCTGAT 5444489 TTCTGA 1 TTCTGA 5444495 GACTCGGATG Statistics Matches: 17, Mismatches: 3, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 7 17 1.00 ACGTcount: A:0.15, C:0.19, G:0.19, T:0.48 Consensus pattern (7 bp): TTCTGAT Left flanking sequence: Indices 5443968 -- 5444467 CTTCTCTAACCTTGTGCCACTGCAATTCTAACCCCTCTGTAAACGATCCCATAAAACGCAATGAT AAACAAGGCAACCCAACGAGCTTGTCACGCATTTCAAATGCATTTGCCACCAGCGAAGAATAACC GACAGGCGGGAAATGCAGCCAATGCACTGAAGGCAGCGTTTTCATGCAAATGGAGGCGACCTCGG GCTAGAAGAGCAGCTAATCCCATCCAGAGTCGGAAACCACAAGGTGGAAACGAACAGAAAACCAA ACCCACAAAGAGACCAAGCCAAGCCTCGTAAATTTGCAGCTTATTGGCAATAACTGCAAGTGGCT TGTTAACAATTTAACACGTCTTAATCGTTAAATTTGTGGATGCGCAAAAAAAAAAGGAAAAGAAA AACCCTATACAACTGCAAAGGCTGAGAGGTGAGCATTTCGTATTTCCAAGTTAAATGCCAAACGC ATGACACTTTTGTAGGTGTGAATGCCAAACGGGCTGTGGGGACAC Right flanking sequence: Indices 5444495 -- 5444994 GACTCGGATGCTGATTTTAATGGCAAACCGGTTGGGTGCCAGTTCGATCTGTTTAATAATGATAT TTTCTGGCCCAGGCCCAGGCTCAGACGCGAACGCGAACGCAGACTCCAACTCAGGTTCCGTCCCA GTCAGAGCCAAACAAAAGACTTAAGTCATAAACTTTATGACATTTTGCAAAAATCTCGCCAAGAA TGTCATCAATGAAACAAATCGATTTGTTTACATGCCAACGTCGACGGCGTAGCTCTTACACTGAA TGAAAAGGTTTTGAGTAAATTTATAAACAAAAAATTATATTATAATTTAGATTTAATTGAATTAA TTGAATTGAATTTTTAAGTCTTTAGATTTATTCGTGACAAAATAAGGTACGAAATAAATTGAAAA TTCACCTTTTTATATATGTTTTTTTTTTCAGTGCCATGTTTCAGCTGGTGTCGTTGGCAGTCTGG CCTCCGTCTCTCATTGCCAATATCGATTTGACTCCTTTGGCTTGG Found at i:5444821 original size:9 final size:9 Alignment explanation
Indices: 5444807--5444831 Score: 41 Period size: 9 Copynumber: 2.7 Consensus size: 9 5444797 TAATTTAGAT 5444807 TTAATTGAA 1 TTAATTGAA 5444816 TTAATTGAA 1 TTAATTGAA 5444825 TTGAATT 1 TT-AATT 5444832 TTTAAGTCTT Statistics Matches: 15, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 9 11 0.73 10 4 0.27 ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48 Consensus pattern (9 bp): TTAATTGAA Left flanking sequence: Indices 5444307 -- 5444806 CACGTCTTAATCGTTAAATTTGTGGATGCGCAAAAAAAAAAGGAAAAGAAAAACCCTATACAACT GCAAAGGCTGAGAGGTGAGCATTTCGTATTTCCAAGTTAAATGCCAAACGCATGACACTTTTGTA GGTGTGAATGCCAAACGGGCTGTGGGGACACTTCTGATTTCTGATCTCTGAGTTCTGAGACTCGG ATGCTGATTTTAATGGCAAACCGGTTGGGTGCCAGTTCGATCTGTTTAATAATGATATTTTCTGG CCCAGGCCCAGGCTCAGACGCGAACGCGAACGCAGACTCCAACTCAGGTTCCGTCCCAGTCAGAG CCAAACAAAAGACTTAAGTCATAAACTTTATGACATTTTGCAAAAATCTCGCCAAGAATGTCATC AATGAAACAAATCGATTTGTTTACATGCCAACGTCGACGGCGTAGCTCTTACACTGAATGAAAAG GTTTTGAGTAAATTTATAAACAAAAAATTATATTATAATTTAGAT Right flanking sequence: Indices 5444832 -- 5445331 TTTAAGTCTTTAGATTTATTCGTGACAAAATAAGGTACGAAATAAATTGAAAATTCACCTTTTTA TATATGTTTTTTTTTTCAGTGCCATGTTTCAGCTGGTGTCGTTGGCAGTCTGGCCTCCGTCTCTC ATTGCCAATATCGATTTGACTCCTTTGGCTTGGCCCTGTCTGCCACCAGGTTGCAGTAGACCCTC CCCCTCTCTCATTTATGTGGCTTTGCCTCTTGGCTTTGTCCACACAATTCTGGGAAGATTTTAAT CTTACTCACTGTAGTCTCCTTCAGCTTGTTTCCTTCTCTTTTGTTGCTGTGGAAGGGGGCATTCG GTGTGCGGTTTATGGCTTTTCGTGTCTGATAATTTTCTGATTTTAATGTGCGAAATTAAACATCA CATTTTTCAACACGAACGTTTTGGTTGTGTATTGGTGTAACTCAAAAGAAAACAGGTCTAAAGTT AAAATACTATACACATATATGCAATTTGAAAGCAGAAATGCTATG Found at i:5446045 original size:7 final size:7 Alignment explanation
Indices: 5446035--5446048 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 5446025 AATATAAAAT 5446035 ATTTAAA 1 ATTTAAA 5446042 ATTTAAA 1 ATTTAAA 5446049 TGTATTTGTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43 Consensus pattern (7 bp): ATTTAAA Left flanking sequence: Indices 5445535 -- 5446034 AAGCAAACCAACCACTCGCAGGGTGGTGCATTTATAGATACCACCCCCTGGGTGGTGTATCACAT CAATCAGATACACGTTACATGTGTAGCATAATGCCTGCACAAACACAGCCACAATTTCCCGAGTA CAAGTGGCGGCAAAGCGGGCCATAAATACTAACCGCATAAAGCGGTGGCCTAATCCTCTAAGTGG GGGTTGGGTGCTCTGTGTGGGAGGGGGGTATCTGCAAAGTCACCCCCTGGGTTATTTATACACCC CTGAAAATTCAGCAACAGCAGCAGGACCAATTACTCAACATGATTTCATTGAAATTACCGCACAC AAAACAAAGCCAAGCTGGTTTTGAAGGAAGCTAACTCTCAGGCTTGTCGAGATGGAATACACTGA AAAAAATATAAAGAAAAAATACTTACACAATTTTATTTTCTTATTCTTTAGCAAAACAATAATAA AATATTCATATTATAAAAATGAAAAAATTAAGGATAATATAAAAT Right flanking sequence: Indices 5446049 -- 5446548 TGTATTTGTTGCAAAGAGTATATATATCTTAAGAGTATTTTCTTACAGAGAACCATTTTTATTCA AAAGTACATACATTTATTTTTAGTGCATCAGCAGCAACAACAACATCAATCTCAATAACAATTCA TAATTCATGTTTAACATGCGCCCCCGTTATTGAGCAATTTAGCAGGGTACCATCCTGCCACCCCC ACCACCAATTCACCCCGCACCATCCGCTCCTGCACCGCCACCCCGCGCCACCCTCTCAAGTGGGC CACTCATCCACTCGCAAGTCGCATAAATTGTTGATTGTTTGTCTATGCTGTGGGATGTATTTATG GCACCCGGGGAGTGAAGTCAACTTTTTTCTGGCTCAATAACAAATGACACCCCAATTGGGGTGGA CCGACGACAACTTCGTCAGCTATCCACCTGCCACCCTCCGCTTATGCCGCCCGTTTTCCTCCGCT TTTCCGATGATCATCCCTAATTGGTGTTGAATGGAGTTTGCCTTG Found at i:5446185 original size:7 final size:7 Alignment explanation
Indices: 5446173--5446186 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 5446163 TCTCAATAAC 5446173 AATTCAT 1 AATTCAT 5446180 AATTCAT 1 AATTCAT 5446187 GTTTAACATG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43 Consensus pattern (7 bp): AATTCAT Left flanking sequence: Indices 5445673 -- 5446172 GGCAAAGCGGGCCATAAATACTAACCGCATAAAGCGGTGGCCTAATCCTCTAAGTGGGGGTTGGG TGCTCTGTGTGGGAGGGGGGTATCTGCAAAGTCACCCCCTGGGTTATTTATACACCCCTGAAAAT TCAGCAACAGCAGCAGGACCAATTACTCAACATGATTTCATTGAAATTACCGCACACAAAACAAA GCCAAGCTGGTTTTGAAGGAAGCTAACTCTCAGGCTTGTCGAGATGGAATACACTGAAAAAAATA TAAAGAAAAAATACTTACACAATTTTATTTTCTTATTCTTTAGCAAAACAATAATAAAATATTCA TATTATAAAAATGAAAAAATTAAGGATAATATAAAATATTTAAAATTTAAATGTATTTGTTGCAA AGAGTATATATATCTTAAGAGTATTTTCTTACAGAGAACCATTTTTATTCAAAAGTACATACATT TATTTTTAGTGCATCAGCAGCAACAACAACATCAATCTCAATAAC Right flanking sequence: Indices 5446187 -- 5446686 GTTTAACATGCGCCCCCGTTATTGAGCAATTTAGCAGGGTACCATCCTGCCACCCCCACCACCAA TTCACCCCGCACCATCCGCTCCTGCACCGCCACCCCGCGCCACCCTCTCAAGTGGGCCACTCATC CACTCGCAAGTCGCATAAATTGTTGATTGTTTGTCTATGCTGTGGGATGTATTTATGGCACCCGG GGAGTGAAGTCAACTTTTTTCTGGCTCAATAACAAATGACACCCCAATTGGGGTGGACCGACGAC AACTTCGTCAGCTATCCACCTGCCACCCTCCGCTTATGCCGCCCGTTTTCCTCCGCTTTTCCGAT GATCATCCCTAATTGGTGTTGAATGGAGTTTGCCTTGTGGCTGGTGAAATTTTCCGCTCTTGGGG TGAAAGGTGGTAACCCTGAAAGGATGCTGACTGTTTGTCTGCGTCTGCATTTTTTATGGGAGTTA CGGATGAAATTTAAGGGTTGTACGGGGGCTTGCCAAATCTCGTGG Found at i:5448682 original size:8 final size:8 Alignment explanation
Indices: 5448669--5448684 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 5448659 GATGGGAAAT 5448669 AAAAGGGG 1 AAAAGGGG 5448677 AAAAGGGG 1 AAAAGGGG 5448685 GAGTAACAGA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00 Consensus pattern (8 bp): AAAAGGGG Left flanking sequence: Indices 5448169 -- 5448668 TTTTTGTGTTCGCTTTCGCTTATCTTTAACTGCCATCAACAAGATGGCAACTTCCGTTCGCGCGC CATAATGTTTTCCCTACACAGCAAGGATCCTTGGCACACACACACACACACACAAACACACTCAC ACACAAGTCACGCACACTGCGAGAATTTGGGGGTAGGGGTTGGGGAAATGGTCACCAGGGCGTGT AATTGAGTGCTACAGGACCCTTTTAACATTTTTATTTGCACATTAGCGAGGGTGGAAATGGCGAA ATTTGCGCCCAAAGTGACAGAGCGTTGAGTGTGGGCGGCAAGGATATCGATGGACGGGGGAGTGG CAGGATGTTCGCTTGGCATTTCGCTAACCATTTCCGTATTGAGTTCCCGTTAGGACTGTCAATAT GCCTTTGCACTGCGACCGTTGGTGCGTTCATCTCGAAAGTCGTAGACAAATTTGTTTGTGGTTCC AAATGCGACAGTTGCGAAAAATTGACAAGGGCATCGATGGGAAAT Right flanking sequence: Indices 5448685 -- 5449184 GAGTAACAGATTCTCCAAACATATGCCAAGATGTCACTGGAACAGACAACGATCGATTGTTATGG GCAAGGACATAAAATCTGAGGGGTTGATTGTCCGAAAAGTTTATTTAAGGTTTAATGTGCATTTT ACAATGCAGGGGTGTAATTAGATGAGGTATCGATAGCTAATCAGGATGGTAATGTACTAAAATAT TATTGGCCAATGTCGCAAAATACTTATATACGAAATAATTAAAATGAACCTATTTGAAGTAGAAG CAGTAGATTACTTTACTCTTTAATGGGGCATGCAACTAAATCTATAAATTTTCATACATTTTCCA TAACCCACTGGTTAATTCGAAAGAGCTTTCCATTTCGCACCACATTTCGAACTACATTCAAGCCT CCATTCTCGCCAAAAAGCAAGGCCAACATTTTCCAGATAAAAGCCGCAGTACACAAAAACGAAGT TGGTCCGACAGAACGCACCCTTTTGTCCCATAATTCAAACGCAAT Found at i:5449007 original size:10 final size:10 Alignment explanation
Indices: 5448988--5449012 Score: 34 Period size: 10 Copynumber: 2.4 Consensus size: 10 5448978 AACTAAATCT 5448988 ATAAATTTTC 1 ATAAATTTTC * 5448998 ATACATTTTCC 1 ATAAATTTT-C 5449009 ATAA 1 ATAA 5449013 CCCACTGGTT Statistics Matches: 12, Mismatches: 2, Indels: 1 0.80 0.13 0.07 Matches are distributed among these distances: 10 8 0.67 11 4 0.33 ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44 Consensus pattern (10 bp): ATAAATTTTC Left flanking sequence: Indices 5448488 -- 5448987 GAGTGGCAGGATGTTCGCTTGGCATTTCGCTAACCATTTCCGTATTGAGTTCCCGTTAGGACTGT CAATATGCCTTTGCACTGCGACCGTTGGTGCGTTCATCTCGAAAGTCGTAGACAAATTTGTTTGT GGTTCCAAATGCGACAGTTGCGAAAAATTGACAAGGGCATCGATGGGAAATAAAAGGGGAAAAGG GGGAGTAACAGATTCTCCAAACATATGCCAAGATGTCACTGGAACAGACAACGATCGATTGTTAT GGGCAAGGACATAAAATCTGAGGGGTTGATTGTCCGAAAAGTTTATTTAAGGTTTAATGTGCATT TTACAATGCAGGGGTGTAATTAGATGAGGTATCGATAGCTAATCAGGATGGTAATGTACTAAAAT ATTATTGGCCAATGTCGCAAAATACTTATATACGAAATAATTAAAATGAACCTATTTGAAGTAGA AGCAGTAGATTACTTTACTCTTTAATGGGGCATGCAACTAAATCT Right flanking sequence: Indices 5449013 -- 5449512 CCCACTGGTTAATTCGAAAGAGCTTTCCATTTCGCACCACATTTCGAACTACATTCAAGCCTCCA TTCTCGCCAAAAAGCAAGGCCAACATTTTCCAGATAAAAGCCGCAGTACACAAAAACGAAGTTGG TCCGACAGAACGCACCCTTTTGTCCCATAATTCAAACGCAATAGGCCAAATGGCAGCCATTTTGA AACCCTTTTCATACGCGGCGTATGAGTAACATGGCAAATGGCATGAATAATTCCACTACCGCCGT CGCAGTCGCAGTAGCAGCTGATGATAAAACATGAAAATGGGCAAACATAAATCTAGCACACACGC ACACACAAGATACGCCGTAAACAGTCGGACCTCCTCGGCTCTTAAATATTCGGCTCTTTATTAAA GTGCCACTGCTCTTCCTCTTTTCCGACTACCACTCTCCTGATTTTCTCCCATACCCCGAACACTT TCACTACCATTTCGGCCAGGAGACAACATTTACATCAACATCACC Found at i:5449341 original size:8 final size:8 Alignment explanation
Indices: 5449328--5449343 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 5449318 CATAAATCTA 5449328 GCACACAC 1 GCACACAC 5449336 GCACACAC 1 GCACACAC 5449344 AAGATACGCC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.50, G:0.12, T:0.00 Consensus pattern (8 bp): GCACACAC Left flanking sequence: Indices 5448828 -- 5449327 GTAATTAGATGAGGTATCGATAGCTAATCAGGATGGTAATGTACTAAAATATTATTGGCCAATGT CGCAAAATACTTATATACGAAATAATTAAAATGAACCTATTTGAAGTAGAAGCAGTAGATTACTT TACTCTTTAATGGGGCATGCAACTAAATCTATAAATTTTCATACATTTTCCATAACCCACTGGTT AATTCGAAAGAGCTTTCCATTTCGCACCACATTTCGAACTACATTCAAGCCTCCATTCTCGCCAA AAAGCAAGGCCAACATTTTCCAGATAAAAGCCGCAGTACACAAAAACGAAGTTGGTCCGACAGAA CGCACCCTTTTGTCCCATAATTCAAACGCAATAGGCCAAATGGCAGCCATTTTGAAACCCTTTTC ATACGCGGCGTATGAGTAACATGGCAAATGGCATGAATAATTCCACTACCGCCGTCGCAGTCGCA GTAGCAGCTGATGATAAAACATGAAAATGGGCAAACATAAATCTA Right flanking sequence: Indices 5449344 -- 5449843 AAGATACGCCGTAAACAGTCGGACCTCCTCGGCTCTTAAATATTCGGCTCTTTATTAAAGTGCCA CTGCTCTTCCTCTTTTCCGACTACCACTCTCCTGATTTTCTCCCATACCCCGAACACTTTCACTA CCATTTCGGCCAGGAGACAACATTTACATCAACATCACCATCACCATCAGCATCAGCTTCCACTC AGCTCGTTTCGCTTCTCGTGGTCGTTTGGGCAAAGTCAACTTTCGTTTAGCTTGTAAATAGCTCG TTTTCGCAGACTTCGTAACTCGACGCCATGTTAATATATAACAATTAATCTTAACTAAAAGTATC AGACGCCCACCAGCGTTCCTTGGAGCCTCGGCGTTTATGCGGCAGCAAACAGGATGAAAATTAAT CTTGAACTACTACAAATGTGTCTAGTATCCATATACGTATCCATAGAAAGCAATTATAAAACATA GAGATACAACTTTTTATACTAAAAGCTGTCCATTTAGTAAATGCC Found at i:5451876 original size:8 final size:8 Alignment explanation
Indices: 5451858--5451881 Score: 32 Period size: 8 Copynumber: 2.9 Consensus size: 8 5451848 GTGAGCATCG 5451858 TTTCACAAC 1 TTTC-CAAC 5451867 TTTCCAAC 1 TTTCCAAC * 5451875 TTGCCAA 1 TTTCCAA 5451882 AAAATCGAAG Statistics Matches: 14, Mismatches: 1, Indels: 1 0.88 0.06 0.06 Matches are distributed among these distances: 8 10 0.71 9 4 0.29 ACGTcount: A:0.29, C:0.33, G:0.04, T:0.33 Consensus pattern (8 bp): TTTCCAAC Left flanking sequence: Indices 5451358 -- 5451857 TTTGGCTTGGGAAATACCAGGTAATTGTTATGTCTCTTGCTGCAAGGTAAGGTTTTAATTTGGGA TATGAGGCAAGCTACGGGTTAATTACAGTATTAAAAGGTCATTTGTCTAAGTAATATTTCTCTTA AATGTTTTTTATGGTTCGAATGGTTCGTAAATATTAAATGTAAAATGCACTTACAATTTCCAGTT CCTTGGCATAACTCAAACATTTTTAGTGCCGCTTAAAAATCCATTGTTTGCACACAGACATTTCG GTGTGGATTTCGCAGTTAGATAAAACATAAGAATCTCCAGGAGCAGACAAAACTTCTCGCTGATT ATGTAAGCAACTCAGCGCGGCCAAGGAAAACCAATTTAAAATTCACAGCACATTTTCCGCTGCTC GGTAACAATATTGACAAAAAAGGCAGGAGAGAAAACCCCGCACTGCAGCGAAGAAATGAGAGCAG AAGGAAAAGCTGGGAAAGCGGCTGCTTAAAATTCCGTGAGCATCG Right flanking sequence: Indices 5451882 -- 5452381 AAAATCGAAGCGGAAAAGTGGAGAGGCAGAGATAGAGGAAGGGAAAAATGCAGAAGCATAAATTC TCCGGGGGGGCGGCAGAAAGTCCAGGAGAGACACAGACACTGAACGAGAGAGTGAGAAAAAGTCG GGAAAATGTGAGGAAAATAAATGAAAATGCTCCAGAGCTCGTTCACAAGAGTGCTTACGGCATCC GCAAGGAGCTGTTGAAGTGGCAAATTTGCGCAGAGCGACGCAGGACAACCGCCCACAGGCCCCAT TTTTGCCCACCGCCTTTCCGCCACCCACCAGCCCCTTGGATTTTCCCCTGATTTTCCTCGTTACT TACAACAACTACATGCCAGTGTCAACACATACTTGGCCATTCAAGTGGGCAACCCCAAGGAAGCT GGCGACGCCATGTTGGTTTTCTTCTCTGTCTCTCTCTCTCTCTCTTTCTCTCTTGGCCAAAAACA TTTTTATGGCTGCGACACATAAAAGCCAAAAAGTACCGAATGTCA Found at i:5455416 original size:9 final size:10 Alignment explanation
Indices: 5455402--5455422 Score: 35 Period size: 9 Copynumber: 2.2 Consensus size: 10 5455392 CTAAAACAAA 5455402 AGCAAG-TCC 1 AGCAAGTTCC 5455411 AGCAAGTTCC 1 AGCAAGTTCC 5455421 AG 1 AG 5455423 TTCTCTTAGC Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 9 6 0.55 10 5 0.45 ACGTcount: A:0.33, C:0.29, G:0.24, T:0.14 Consensus pattern (10 bp): AGCAAGTTCC Left flanking sequence: Indices 5454902 -- 5455401 GGTCCCCGGGGGAAAACAGGACAGGCCAATTATGTTGATGGTAAACAAATTGCGCACGTACCATG GCATCAAAATTAGTGGCACAAGAGCAGGAGACACACACAAAAATAAAATTAAAAAGAAAGTAAGG AGCTGGCATTGCAGAAGGACACGCCAGGCATGATACTGTAACTGAGCTGAGCTGAGCTGAGCTGT GCTGAACTGAAAGATCTAATTACGCTAATGACGAGTCCTGCTTGATGCAATTAAACGCTTCAATC GAGCTGCGTGCAATGACGACATAAGGTCAAAGTCGTCCTTTTAAGCCGGGAGTCAGCTGGCAAAG GAATCGAACGCAATATGAATTCATTACAATTCGATAACGAAGCTAAATGCAACGAAGCCATTTAA ACTCTGGCTTCTGGCGGCAGTTAAATGCACGCACGTCCAAAAAAATACCAAGCACTGAAAGAAAA TGGGGGTACAAAAATTGAAGAATTCACAAGTCTACCTAAAACAAA Right flanking sequence: Indices 5455423 -- 5455922 TTCTCTTAGCTTATGTGGCATGGGGAGAAACAGTATTCAATTTGTTAGCATATGTTTTATATGAA GCCTACTATATGTATATATCCTTTCTTGAAACAGATGCAATCATATTTCAGTGTCAGAAGAGGAC AGAGAAAAGAGCCTGCTTCCGTCACAATTTAAGCGGATTTAGCGCCTGTTGACGCCTCTCAAATT TCCAGAGACCGCACACAGCGCTTCATTAGCAACACCTACCGAAAAGTGGAAAGGAGGGCGATGTA TGTATACTTTTGGCCATTGCCTCATCAAAGGGTGTTGCAGCAGCAAGGAGCAGACGAAGCCGAAA CCCTAGACGTGCACCAAAAAACCAACATTTCGGGGCGTTGCAAAAGACCTCACATGAGGCAAGCA GATTAAGGCATTGACTCATTTGAATGGAAGTGAACGTGCGAGTGTGGAGTGTGAATAATGAGTGT TCAAACTCTACATGTAGCAAATGTTTTGGCAGAATGTTTATTATA Found at i:5455864 original size:7 final size:7 Alignment explanation
Indices: 5455852--5455865 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 5455842 GTGAACGTGC 5455852 GAGTGTG 1 GAGTGTG 5455859 GAGTGTG 1 GAGTGTG 5455866 AATAATGAGT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.00, G:0.57, T:0.29 Consensus pattern (7 bp): GAGTGTG Left flanking sequence: Indices 5455352 -- 5455851 GAAAATGGGGGTACAAAAATTGAAGAATTCACAAGTCTACCTAAAACAAAAGCAAGTCCAGCAAG TTCCAGTTCTCTTAGCTTATGTGGCATGGGGAGAAACAGTATTCAATTTGTTAGCATATGTTTTA TATGAAGCCTACTATATGTATATATCCTTTCTTGAAACAGATGCAATCATATTTCAGTGTCAGAA GAGGACAGAGAAAAGAGCCTGCTTCCGTCACAATTTAAGCGGATTTAGCGCCTGTTGACGCCTCT CAAATTTCCAGAGACCGCACACAGCGCTTCATTAGCAACACCTACCGAAAAGTGGAAAGGAGGGC GATGTATGTATACTTTTGGCCATTGCCTCATCAAAGGGTGTTGCAGCAGCAAGGAGCAGACGAAG CCGAAACCCTAGACGTGCACCAAAAAACCAACATTTCGGGGCGTTGCAAAAGACCTCACATGAGG CAAGCAGATTAAGGCATTGACTCATTTGAATGGAAGTGAACGTGC Right flanking sequence: Indices 5455866 -- 5456365 AATAATGAGTGTTCAAACTCTACATGTAGCAAATGTTTTGGCAGAATGTTTATTATAATACAAAA AAAATATTTTTAAAATATTTATATTTACTTGTTAAGTATTCAAGAATAACATTAATGTAATTAAA CAAATCCATAATTTTAAGCGTTTATCAAACAATTTACCCTGTCTTTCTGCCACTTATTGCCAACC CTTTATAAACAGATATATATCTCATAAAAATGCCATCATATCCCAAGTATAACCCTCCAAATCAA TCCCATATCTGTCACAATTGTATGAATGCAAACCGCCTTGGGCACAACCCAAAAAATCCAGCATC CTGAAAACCACACACAAGCAACCTAATTATGATTGATGTGACCGAGCATGGTCCAACCGAAAAAG CGATTCCACAACTATGGAGTGCTCATTAAAACCGCATCAAAAGTCGAACAATGTAGGGATATTTC AAAAGGACGCTGTCTCGAATGCAAATCAAATATGAAATTTTTTAA Found at i:5456690 original size:9 final size:9 Alignment explanation
Indices: 5456673--5456690 Score: 29 Period size: 9 Copynumber: 2.0 Consensus size: 9 5456663 TGACAAAAGG 5456673 ACATGTGCA 1 ACATGTGCA * 5456682 ACATTTGCA 1 ACATGTGCA 5456691 GGCTGCCCCG Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 8 1.00 ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28 Consensus pattern (9 bp): ACATGTGCA Left flanking sequence: Indices 5456173 -- 5456672 CCCAAAAAATCCAGCATCCTGAAAACCACACACAAGCAACCTAATTATGATTGATGTGACCGAGC ATGGTCCAACCGAAAAAGCGATTCCACAACTATGGAGTGCTCATTAAAACCGCATCAAAAGTCGA ACAATGTAGGGATATTTCAAAAGGACGCTGTCTCGAATGCAAATCAAATATGAAATTTTTTAATA TTTTGTTGGCACAACACAACAAATTTCAATATAATGCCAGGGAACGAACGCGCCGAGCGTGAAAA ATGATCTATTGCCGAGAAAAAGGACGAAGGGCCGAGCCTGATCTTTTTCTGGGCAGATGCAGCAG CATCTTCGAGGAGTCTTCCCCTTTTCGTATTCGTCTACTATTTGAATTCAATTTAGAGCAAACGG TTCAGCTTGACTTGACTTGTGCCTTGTGGCAGCAGTGAAAAAAAAATAGTATAAAGGACATTTGG TTTGTTTGTTTTCAGCCTTCCCTCCGTTAAATTTATGACAAAAGG Right flanking sequence: Indices 5456691 -- 5457190 GGCTGCCCCGTTTCGTGTTTTTTTTTTTTTTGTTTTTGGGAACCACCATTTTGAGGCTTTGAAAT AGAACCTCCCCAACCTTGGGCCACCATTAATCAACTGCTGCACGTGTTCCAGGCGCTAAGAAGTC AATCTATATAAATGCCAGGATACCCGCCCATTATTCGGGTATATTTTCTTTCGCTCACCTGCAAT TAGACGCCCTCAATTATGTTGTGCAATGAATGAAAGTGAGATTGCGGCAAGTGCAAAGGGCTCGG TGGACTTCCTACTTTCGCACTTTTTCCTTTAGCCTTAAGCTGGGTATTTGTTTTTTCGAACACCC AGTGCCCGAGCACCTGGGACGCAGTTGGTGGGCGCTGGCCAAAAAGGATAATTGCAGAAGTGGGT GTTGCGCCTTTAGCGGCTTAGGACTCCTTCGGCAAACAACGAAAAACGCTCCTCCCGGCGGCGGT CAGGTTCAAATGGCAAAGGCTGCTCCCGGGACCTGTTGTAATTGA Found at i:5457450 original size:8 final size:9 Alignment explanation
Indices: 5457435--5457456 Score: 30 Period size: 8 Copynumber: 2.6 Consensus size: 9 5457425 GAGTAAATTT * 5457435 ATAAATAA- 1 ATATATAAG 5457443 ATATATAAG 1 ATATATAAG 5457452 ATATA 1 ATATA 5457457 ACACTTTTAA Statistics Matches: 12, Mismatches: 1, Indels: 1 0.86 0.07 0.07 Matches are distributed among these distances: 8 7 0.58 9 5 0.42 ACGTcount: A:0.64, C:0.00, G:0.05, T:0.32 Consensus pattern (9 bp): ATATATAAG Left flanking sequence: Indices 5456935 -- 5457434 AGTGCAAAGGGCTCGGTGGACTTCCTACTTTCGCACTTTTTCCTTTAGCCTTAAGCTGGGTATTT GTTTTTTCGAACACCCAGTGCCCGAGCACCTGGGACGCAGTTGGTGGGCGCTGGCCAAAAAGGAT AATTGCAGAAGTGGGTGTTGCGCCTTTAGCGGCTTAGGACTCCTTCGGCAAACAACGAAAAACGC TCCTCCCGGCGGCGGTCAGGTTCAAATGGCAAAGGCTGCTCCCGGGACCTGTTGTAATTGACACC TTAAAACTGAGTCCTTCGATCAACCGCACTGGCGGAGATCTGTCAAAGGAAGTGGCAGAAATTCG CAGAAATTGCCACTACAAATGTGCCGCCCGAGGGAAAATCTTTTGGGGATTAGCATACGCCAATT ATGGATAAGTAAAATATATGCTAAAGCTAAACAAACATATAACAATTAAGGTAAGCCACTAAAGT GCAGACTTATATTATATAAATGATGAGTAAAATATGAGTAAATTT Right flanking sequence: Indices 5457457 -- 5457956 ACACTTTTAATAAATAGAAATTTATAAGTTTAAGTTACATCTCTACATTGCATTTCACATTTCAC CGCCTTGTAATATTCTCGCCAATTTATGAATTTTCATTATTGTTTTGCAGCCTGCTCTCGCCAAC GGATTGGGTAATAATTACCGGCAAATTGCCGACTCAAAGTGAACTCATTTCGCCCGTTTGCAATT GTGCCCATATTGCGCAGCATGGTAATCTGCGGCATCTTGAGGATCCAATCCAATCCCCAAGCCGC TGATTTTGCAGCTGCCAGGCAGAGCAAACTCCGGATTTGCAATGTGAAATCGCCGTCTGTAATTG GGCCATAAAAAAAATAAGAAGATCAGGATCCACCAGCTGCCTCGGTGGATATGTAAATTTAGTGT TAAGGTGCACAAAATGGGCGTTTTGGTGAAGATTAAGCAAGCGCAAGCTTGGACTCCAATTGCAG GGGTAAAACCTTTAACAAAAAAAAATGAAGGGAAAACAAGAAAAG Found at i:5457519 original size:7 final size:7 Alignment explanation
Indices: 5457507--5457521 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 5457497 CTCTACATTG 5457507 CATTTCA 1 CATTTCA 5457514 CATTTCA 1 CATTTCA 5457521 C 1 C 5457522 CGCCTTGTAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.27, C:0.33, G:0.00, T:0.40 Consensus pattern (7 bp): CATTTCA Left flanking sequence: Indices 5457007 -- 5457506 CGAACACCCAGTGCCCGAGCACCTGGGACGCAGTTGGTGGGCGCTGGCCAAAAAGGATAATTGCA GAAGTGGGTGTTGCGCCTTTAGCGGCTTAGGACTCCTTCGGCAAACAACGAAAAACGCTCCTCCC GGCGGCGGTCAGGTTCAAATGGCAAAGGCTGCTCCCGGGACCTGTTGTAATTGACACCTTAAAAC TGAGTCCTTCGATCAACCGCACTGGCGGAGATCTGTCAAAGGAAGTGGCAGAAATTCGCAGAAAT TGCCACTACAAATGTGCCGCCCGAGGGAAAATCTTTTGGGGATTAGCATACGCCAATTATGGATA AGTAAAATATATGCTAAAGCTAAACAAACATATAACAATTAAGGTAAGCCACTAAAGTGCAGACT TATATTATATAAATGATGAGTAAAATATGAGTAAATTTATAAATAAATATATAAGATATAACACT TTTAATAAATAGAAATTTATAAGTTTAAGTTACATCTCTACATTG Right flanking sequence: Indices 5457522 -- 5458021 CGCCTTGTAATATTCTCGCCAATTTATGAATTTTCATTATTGTTTTGCAGCCTGCTCTCGCCAAC GGATTGGGTAATAATTACCGGCAAATTGCCGACTCAAAGTGAACTCATTTCGCCCGTTTGCAATT GTGCCCATATTGCGCAGCATGGTAATCTGCGGCATCTTGAGGATCCAATCCAATCCCCAAGCCGC TGATTTTGCAGCTGCCAGGCAGAGCAAACTCCGGATTTGCAATGTGAAATCGCCGTCTGTAATTG GGCCATAAAAAAAATAAGAAGATCAGGATCCACCAGCTGCCTCGGTGGATATGTAAATTTAGTGT TAAGGTGCACAAAATGGGCGTTTTGGTGAAGATTAAGCAAGCGCAAGCTTGGACTCCAATTGCAG GGGTAAAACCTTTAACAAAAAAAAATGAAGGGAAAACAAGAAAAGGCGTTTCCCGACAATGACAT AAATTTTAGAGCAGCAAAAAAAAAAAAACAAATAAATAAAGCCAA Found at i:5458798 original size:7 final size:7 Alignment explanation
Indices: 5458783--5458799 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 5458773 GAAATATGCG * 5458783 TGAAGGA 1 TGAAAGA 5458790 TGAAAGA 1 TGAAAGA 5458797 TGA 1 TGA 5458800 TTTGGCAAAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.47, C:0.00, G:0.35, T:0.18 Consensus pattern (7 bp): TGAAAGA Left flanking sequence: Indices 5458283 -- 5458782 AGATTTATGGTGACTGCTAAAAGGGAATTCCCAGAAAATTTGCTACCTTATTCACTTCTGTGGTT TTTTTGCATAAACAAATAGCTGGGGAATAAAGGCAGTGTCCAACTTTTAGCGGAATTGCTACCGG GCTAAAAAGGAAAAAAGAGTGGAAAACCCGGAGCCGGTAGCCAAGAGTGCCGGGCATTTATCAAA GCGTCGGCTCTGATTTGAAGATGCACCCAAACGGCAAACAAACAAAAAAAAACATATATACAACT GGGTCCCCAGGGCAAAGCCCAAAAAGCAAAACCCAACCCAATGAGTTTCATTAATAAATTCCAGA ACAAAACACCCAGACAAACCGGTTGGCCAGCCATCCTCCTTTTCCCCCCAGAAATATTCATTATT TGTATTTTCATTTTTTTTTTGTGGGCGTTCTCAGTGCAAACAACTGAAAATAATGGAAAATATTT GGTAAATATTTGCGGGCAGGCCACAGGACACGAGGGAAATATGCG Right flanking sequence: Indices 5458800 -- 5459299 TTTGGCAAATATCCTTGCCAGACAATGCGGCACCAGAAACTGGAAATGCCTAATGTGATTTGAGG ATCTTGAGGGATGGCATCAAGATACTGTTATGGATTATGAATTATTAAATTTGTAATTCGACTTA GAATAGGTAGATTAAAAGATTGAACGAATATGTACATATATAAATTAAATTTACAGATACAAAAT GATATCAGGTAACAAACAGACTTTTCTTATCGTTACAAAGAGTGATATCAAATTATATAAAATGT ATTACAAGTAATCATACAATGCAGAGTGCATAATTCCCCATATCATTTTCATTTCCAGCACACAT GTTGCTGCAATTCCGCTTTATAAATAGAAACTCAATAGTGCTTGGGTTGCTTCCGCTTTTAGTGC TTATCGGGCAGATTTTGGAGTCGAGGCAAGTGCCAAGCGGAAATTCTCCGCCGCCTCGTCTTCAG ACCCCCAAAAGAAATGGAAATGGTAATAAAAATAATACGAACACG Found at i:5458908 original size:7 final size:7 Alignment explanation
Indices: 5458892--5458909 Score: 29 Period size: 7 Copynumber: 2.6 Consensus size: 7 5458882 CAAGATACTG * 5458892 TTATGGA 1 TTATGAA 5458899 TTATGAA 1 TTATGAA 5458906 TTAT 1 TTAT 5458910 TAAATTTGTA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50 Consensus pattern (7 bp): TTATGAA Left flanking sequence: Indices 5458392 -- 5458891 TTTTAGCGGAATTGCTACCGGGCTAAAAAGGAAAAAAGAGTGGAAAACCCGGAGCCGGTAGCCAA GAGTGCCGGGCATTTATCAAAGCGTCGGCTCTGATTTGAAGATGCACCCAAACGGCAAACAAACA AAAAAAAACATATATACAACTGGGTCCCCAGGGCAAAGCCCAAAAAGCAAAACCCAACCCAATGA GTTTCATTAATAAATTCCAGAACAAAACACCCAGACAAACCGGTTGGCCAGCCATCCTCCTTTTC CCCCCAGAAATATTCATTATTTGTATTTTCATTTTTTTTTTGTGGGCGTTCTCAGTGCAAACAAC TGAAAATAATGGAAAATATTTGGTAAATATTTGCGGGCAGGCCACAGGACACGAGGGAAATATGC GTGAAGGATGAAAGATGATTTGGCAAATATCCTTGCCAGACAATGCGGCACCAGAAACTGGAAAT GCCTAATGTGATTTGAGGATCTTGAGGGATGGCATCAAGATACTG Right flanking sequence: Indices 5458910 -- 5459409 TAAATTTGTAATTCGACTTAGAATAGGTAGATTAAAAGATTGAACGAATATGTACATATATAAAT TAAATTTACAGATACAAAATGATATCAGGTAACAAACAGACTTTTCTTATCGTTACAAAGAGTGA TATCAAATTATATAAAATGTATTACAAGTAATCATACAATGCAGAGTGCATAATTCCCCATATCA TTTTCATTTCCAGCACACATGTTGCTGCAATTCCGCTTTATAAATAGAAACTCAATAGTGCTTGG GTTGCTTCCGCTTTTAGTGCTTATCGGGCAGATTTTGGAGTCGAGGCAAGTGCCAAGCGGAAATT CTCCGCCGCCTCGTCTTCAGACCCCCAAAAGAAATGGAAATGGTAATAAAAATAATACGAACACG TGCCTCCCACTTCAGGGCGGCTCAAGTGCTCGAAAAACGAACGAATTGAAAACCCCCCTGGATGA AGAAGAACCCTTTTGCAATCGAAGCCCCGGAAAGTGTTATTTGAA Found at i:5460399 original size:7 final size:7 Alignment explanation
Indices: 5460387--5460400 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 5460377 ATTTCCGTCA 5460387 TGGCAAT 1 TGGCAAT 5460394 TGGCAAT 1 TGGCAAT 5460401 CCGAGCAATA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29 Consensus pattern (7 bp): TGGCAAT Left flanking sequence: Indices 5459887 -- 5460386 GGTGACATACGGGACTGCCACCTAAAAAGACACACATGTAGATGCACAGACAAGGCCAACATATT AGGAACATAGGCTCTTTTTATGAAAGGAAGTGTAAACCTTTTTCTAGAATCAAAGTATGCACTCT ACTTTTTAGAACCAGCGTTCTTGTGTCATAAAATTGTATTTAAAGTTATCCCAATCTATAATGCT ATCGTCCGTTTTGCTTTTGAATTTGTTAATGCTGATAAAACATTTTATAGCTATCAACTTAACTG CAATTGTAACCAGAACACACACGACGCATCCCTCCCCGTCCACTTTCACCATTTCTCCCAGGGCG AAAGTGTCAAAGTGACATGCCCACTTTGTCGCTACCCGACTTAAAAAATGTCTCAAATTACAAAA ATCACACAACAAGACGGTTTGTTCCTCGCACAGGATAAGCGGGATTAGTCAGCTTGTTAGTTAGT TTGGATCTCCGCGTTCCGTTTTTCAGGATCGCAGGATTTCCGTCA Right flanking sequence: Indices 5460401 -- 5460900 CCGAGCAATACGTAATGAATGTGACGAACTGTCAGTTGTTTCGAGTTTCCTTGTCGCAGCCGCAT TTTCTTTGCATTTTTTAGCGGGTTAATTGGCACTGACAAAGGTCTTGACTTTTGCCTGGGAAACA TAACAATTTGTTGACATCTGTAAATATTATGGGGGAATTTTCCAGAGGACTAGCTTCTATCATAC AGCGTGTGGAATTGTATATAATTACTAACGGAAAAATATCCCTGTTAACTTTTTGAATCGCCATA ATCTAAATTTCATGATCATATCCTCTTGAATATAAAAAAATATAGCTTTACAAATAAAAATGTCT TGACTAATGCTTATAGATATACTATGTTTTCAAATGGACTTCTATAATATGTACTAAGCGAATTG TTTAAAATATGTTCTTCCCTTTACCGAAATAAATTCAAATTGCATATACATTTTAAATAAACTTG TAGTTATTTTCGCACTCTTTATTCATGTTTTTAGAGCACAGAAAA Found at i:5461106 original size:7 final size:7 Alignment explanation
Indices: 5461090--5461106 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 5461080 GAAATGGAAC 5461090 AGACGGA 1 AGACGGA * 5461097 AGATGGA 1 AGACGGA 5461104 AGA 1 AGA 5461107 AAACGTCAGA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.47, C:0.06, G:0.41, T:0.06 Consensus pattern (7 bp): AGACGGA Left flanking sequence: Indices 5460590 -- 5461089 TCATACAGCGTGTGGAATTGTATATAATTACTAACGGAAAAATATCCCTGTTAACTTTTTGAATC GCCATAATCTAAATTTCATGATCATATCCTCTTGAATATAAAAAAATATAGCTTTACAAATAAAA ATGTCTTGACTAATGCTTATAGATATACTATGTTTTCAAATGGACTTCTATAATATGTACTAAGC GAATTGTTTAAAATATGTTCTTCCCTTTACCGAAATAAATTCAAATTGCATATACATTTTAAATA AACTTGTAGTTATTTTCGCACTCTTTATTCATGTTTTTAGAGCACAGAAAAATTTCTCGAGCTCA AACTAATAAATTCCCAACGTCCCATTGCAATAACCTTGACTCAAGGTCCATGTCCTTGCAGATAA ATAAGAAAGGAAAAACAACGGGATGCAACTGCAGAAAAAAAACAGAGACATAAAACTCACTCAAA ACAGAATTGAGTGAGACACGGAACGTGTTGGAAACGAAATGGAAC Right flanking sequence: Indices 5461107 -- 5461606 AAACGTCAGAAGAGGAGATAACAGGAAATGGAATGCGACGACAACGGCGAAAAGTTGTTTAAAAA AAAAGACCAAGAAAAACCGCAAGCAAAACGTTGGCACTTCATAAATGGGCGAGAAAGAGAGGCAA AAATAAAAAGAAAGAGACCTCGCTATGGAGAAATAGAGAGGTGCGAGGGAGAAGGCCAAAAGCGC CGACATTTTTAATTGTAAATGAGTTATGACGCGTTCGTCAGAGAGAGAGGTGAGGCGAAGAAAAG AGAGGGGCGCAAGTTGCTGACAGCGCCGCCTTTCTCTCTGTCGCACGTTCACTCCCCCGCCGATT TTCCAATTGGAAAACGAGAGAGCGAGTGGCGTTTTCACTCAGAGTGTGCGGCTATAGGGCTATCC CGCTTGCACTCGTACTGGCGCGGCTCGCTGTAGGGTGGTCTCGCTTGCACACATAGGGACCATAA GAGGAATAACTGGTTTCCCGAGTTTTGCGCCTGCCGTCGTTTTTG Found at i:5461752 original size:7 final size:7 Alignment explanation
Indices: 5461740--5461753 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 5461730 GAGAGATATA 5461740 AAGATAC 1 AAGATAC 5461747 AAGATAC 1 AAGATAC 5461754 TTACACCTTG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.14, G:0.14, T:0.14 Consensus pattern (7 bp): AAGATAC Left flanking sequence: Indices 5461240 -- 5461739 TAAAAAGAAAGAGACCTCGCTATGGAGAAATAGAGAGGTGCGAGGGAGAAGGCCAAAAGCGCCGA CATTTTTAATTGTAAATGAGTTATGACGCGTTCGTCAGAGAGAGAGGTGAGGCGAAGAAAAGAGA GGGGCGCAAGTTGCTGACAGCGCCGCCTTTCTCTCTGTCGCACGTTCACTCCCCCGCCGATTTTC CAATTGGAAAACGAGAGAGCGAGTGGCGTTTTCACTCAGAGTGTGCGGCTATAGGGCTATCCCGC TTGCACTCGTACTGGCGCGGCTCGCTGTAGGGTGGTCTCGCTTGCACACATAGGGACCATAAGAG GAATAACTGGTTTCCCGAGTTTTGCGCCTGCCGTCGTTTTTGGCTTCTCAGCGGCAACATTTTCC TGACACAATTCAGTTCGTCGTCGCCTGCCTTCCGTTGCGCACACACTCAGTCCGCGAGATTCTCA GTTCGCGTGCGCCAAAGATAAGCAAAAGAAAGCAAGAGAGATATA Right flanking sequence: Indices 5461754 -- 5462253 TTACACCTTGAAACATACACATACCCCTCGAGTTACCAAAGCTAAAGATGCATCTAGCTTTATAA GTGCCAAGTGTTGAAAAGTGACCAGATACAATACCCCAATACCTTTCCAAGGTATTCCCTAGTTA AAGCCCCATTAAGAACAACATCATACCCTTCAAAATGCTGGTTGGATCTCATCCGTATTTGTGCA ACGGGGTGCCCGCCGCCCCTGCAGCACCAAATGCCAGTGGACAGACAACAACAACGGCTAGCAAA AGTGCCGCCGGCTCAGCGACGGACTTTTCCATCGCCGCCATCATGGCTCGCGAAGATGCCTCCAG TCGGGAGTCCTCCATTCGCAGTGCAAGTAAGTTCAGATACATATTGAAAATATCCTTAATAAGAA AGGAATTCTGTGGGAAGCGGCAGAATCATTAATCGGTTGATAGGAACAATTTGTTCTTAAAAATA TATTTTTATGCATTAGAAATTTAATGCCTTGAATATTAAGCATTT Found at i:5462891 original size:8 final size:8 Alignment explanation
Indices: 5462875--5462891 Score: 27 Period size: 8 Copynumber: 2.1 Consensus size: 8 5462865 TTTTGTGGCC * 5462875 GATATTAT 1 GATAATAT 5462883 GATAATAT 1 GATAATAT 5462891 G 1 G 5462892 CAAATTGTGC Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41 Consensus pattern (8 bp): GATAATAT Left flanking sequence: Indices 5462375 -- 5462874 GGTACTTTTGTTTAGAACTTCATTTGACAAGCTATAAGTTCCCTAATTCAACAATCTTTAATCAT AGTAGGTAGTTGTAACTTTAGATATTCACTTATCTCCTAGCAGTGCTTTCTGTACAAAAACTTAC TTAACATACCAGCACACAATAACTAGAAATTGCTAAAACAAAAATGGAATTTTTATACGATTAAT TCAAATTAAACGTGATTAACAACTCAACGCCCAAGAAGAGAACCGCAAACTTGACCAGCGAATGC AAACATTATTAGCCACAAGACAATCGCTAATTGATTGCACAACAAATCTATTAAATTACTGTTGT CGCTTTGGGTGCGCAGAGTTCCATTTAATTGCTAATGACAATTAGCAGGCGTTCCGGCCACGTTA AAAAAGAAAAAACTAGTTCTCTCTGGCCGACGGCATTCGCAATTAAGTCGAGCCAAAGATCGCGA ATCCAGATATTTGTTAGCAAACACTTGCAGCGCTCTTTTGTGGCC Right flanking sequence: Indices 5462892 -- 5463391 CAAATTGTGCACAGCATCTAATCGCGCGGAATTCATATTTAACAAAGGCTGCTAATTATGTTAAT TAATTTTCAACAATGTGCTTCATTTTATTAATTTTACGAGGCGCAGAAAATTAGCGACGGCCGAA ATCAAAACAAAAACGCTACGAGGTGTTCGTATTTTACGATCTCTTTATCAAATATGCAGCTTTTT TAATTTCATATTTTGTTTTGTTTTTTTTGTTTTCTGTGGTCGCTTTCCGTTTTCCGTTTGCTTAC TTTGCATTTTAACACCTACCGTCTGGGCTCACCTGCAAAAAAACCGGGCTGCTTAGTTCTCCCCA TCATTTTGTTACCATTTTCGGCTTATGGAAAATGGAAAGCGTATGTGAGAGTTCGCCCATGGATA AGCCCAAAAATATTATTCATCAACTTTTGCGCACACACCTTGAACGAAAGCCCTCCGCTTTTGTT TATGCAATGGAAAAGAGCAATCGCAGCTAGAGTTTCGGGCTGTTT Found at i:5463116 original size:9 final size:9 Alignment explanation
Indices: 5463098--5463119 Score: 37 Period size: 9 Copynumber: 2.4 Consensus size: 9 5463088 AATTTCATAT * 5463098 TTTGTTTTG 1 TTTTTTTTG 5463107 TTTTTTTTG 1 TTTTTTTTG 5463116 TTTT 1 TTTT 5463120 CTGTGGTCGC Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86 Consensus pattern (9 bp): TTTTTTTTG Left flanking sequence: Indices 5462598 -- 5463097 GCCCAAGAAGAGAACCGCAAACTTGACCAGCGAATGCAAACATTATTAGCCACAAGACAATCGCT AATTGATTGCACAACAAATCTATTAAATTACTGTTGTCGCTTTGGGTGCGCAGAGTTCCATTTAA TTGCTAATGACAATTAGCAGGCGTTCCGGCCACGTTAAAAAAGAAAAAACTAGTTCTCTCTGGCC GACGGCATTCGCAATTAAGTCGAGCCAAAGATCGCGAATCCAGATATTTGTTAGCAAACACTTGC AGCGCTCTTTTGTGGCCGATATTATGATAATATGCAAATTGTGCACAGCATCTAATCGCGCGGAA TTCATATTTAACAAAGGCTGCTAATTATGTTAATTAATTTTCAACAATGTGCTTCATTTTATTAA TTTTACGAGGCGCAGAAAATTAGCGACGGCCGAAATCAAAACAAAAACGCTACGAGGTGTTCGTA TTTTACGATCTCTTTATCAAATATGCAGCTTTTTTAATTTCATAT Right flanking sequence: Indices 5463120 -- 5463619 CTGTGGTCGCTTTCCGTTTTCCGTTTGCTTACTTTGCATTTTAACACCTACCGTCTGGGCTCACC TGCAAAAAAACCGGGCTGCTTAGTTCTCCCCATCATTTTGTTACCATTTTCGGCTTATGGAAAAT GGAAAGCGTATGTGAGAGTTCGCCCATGGATAAGCCCAAAAATATTATTCATCAACTTTTGCGCA CACACCTTGAACGAAAGCCCTCCGCTTTTGTTTATGCAATGGAAAAGAGCAATCGCAGCTAGAGT TTCGGGCTGTTTAATTGCCGATTTGTGTTCAGTTTGACAATTAAGCCAGCGGTCGTCGTCGCACT GTCTCATTGCAATTGAAACGCGAAGCGAAGCGGAAACTCCAAGAATATGAGACGACTCCACGCTG TCTGCCGCGAAATCAGCTCCACCACTCAATGTTGTCAACGGAAGCACGGCCTCGGTTTTTGGCCA AATGCACAACGGAAAAATCGTTAATAAGACGCACAAGTTATGAAG Found at i:5463142 original size:7 final size:7 Alignment explanation
Indices: 5463130--5463145 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 5463120 CTGTGGTCGC 5463130 TTTCCGT 1 TTTCCGT 5463137 TTTCCGT 1 TTTCCGT 5463144 TT 1 TT 5463146 GCTTACTTTG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.00, C:0.25, G:0.12, T:0.62 Consensus pattern (7 bp): TTTCCGT Left flanking sequence: Indices 5462630 -- 5463129 AATGCAAACATTATTAGCCACAAGACAATCGCTAATTGATTGCACAACAAATCTATTAAATTACT GTTGTCGCTTTGGGTGCGCAGAGTTCCATTTAATTGCTAATGACAATTAGCAGGCGTTCCGGCCA CGTTAAAAAAGAAAAAACTAGTTCTCTCTGGCCGACGGCATTCGCAATTAAGTCGAGCCAAAGAT CGCGAATCCAGATATTTGTTAGCAAACACTTGCAGCGCTCTTTTGTGGCCGATATTATGATAATA TGCAAATTGTGCACAGCATCTAATCGCGCGGAATTCATATTTAACAAAGGCTGCTAATTATGTTA ATTAATTTTCAACAATGTGCTTCATTTTATTAATTTTACGAGGCGCAGAAAATTAGCGACGGCCG AAATCAAAACAAAAACGCTACGAGGTGTTCGTATTTTACGATCTCTTTATCAAATATGCAGCTTT TTTAATTTCATATTTTGTTTTGTTTTTTTTGTTTTCTGTGGTCGC Right flanking sequence: Indices 5463146 -- 5463645 GCTTACTTTGCATTTTAACACCTACCGTCTGGGCTCACCTGCAAAAAAACCGGGCTGCTTAGTTC TCCCCATCATTTTGTTACCATTTTCGGCTTATGGAAAATGGAAAGCGTATGTGAGAGTTCGCCCA TGGATAAGCCCAAAAATATTATTCATCAACTTTTGCGCACACACCTTGAACGAAAGCCCTCCGCT TTTGTTTATGCAATGGAAAAGAGCAATCGCAGCTAGAGTTTCGGGCTGTTTAATTGCCGATTTGT GTTCAGTTTGACAATTAAGCCAGCGGTCGTCGTCGCACTGTCTCATTGCAATTGAAACGCGAAGC GAAGCGGAAACTCCAAGAATATGAGACGACTCCACGCTGTCTGCCGCGAAATCAGCTCCACCACT CAATGTTGTCAACGGAAGCACGGCCTCGGTTTTTGGCCAAATGCACAACGGAAAAATCGTTAATA AGACGCACAAGTTATGAAGGAAAAAGTGATGAAAAATTCAGGAAA Found at i:5463253 original size:7 final size:7 Alignment explanation
Indices: 5463241--5463254 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 5463231 TTTTCGGCTT 5463241 ATGGAAA 1 ATGGAAA 5463248 ATGGAAA 1 ATGGAAA 5463255 GCGTATGTGA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.00, G:0.29, T:0.14 Consensus pattern (7 bp): ATGGAAA Left flanking sequence: Indices 5462741 -- 5463240 TTAGCAGGCGTTCCGGCCACGTTAAAAAAGAAAAAACTAGTTCTCTCTGGCCGACGGCATTCGCA ATTAAGTCGAGCCAAAGATCGCGAATCCAGATATTTGTTAGCAAACACTTGCAGCGCTCTTTTGT GGCCGATATTATGATAATATGCAAATTGTGCACAGCATCTAATCGCGCGGAATTCATATTTAACA AAGGCTGCTAATTATGTTAATTAATTTTCAACAATGTGCTTCATTTTATTAATTTTACGAGGCGC AGAAAATTAGCGACGGCCGAAATCAAAACAAAAACGCTACGAGGTGTTCGTATTTTACGATCTCT TTATCAAATATGCAGCTTTTTTAATTTCATATTTTGTTTTGTTTTTTTTGTTTTCTGTGGTCGCT TTCCGTTTTCCGTTTGCTTACTTTGCATTTTAACACCTACCGTCTGGGCTCACCTGCAAAAAAAC CGGGCTGCTTAGTTCTCCCCATCATTTTGTTACCATTTTCGGCTT Right flanking sequence: Indices 5463255 -- 5463754 GCGTATGTGAGAGTTCGCCCATGGATAAGCCCAAAAATATTATTCATCAACTTTTGCGCACACAC CTTGAACGAAAGCCCTCCGCTTTTGTTTATGCAATGGAAAAGAGCAATCGCAGCTAGAGTTTCGG GCTGTTTAATTGCCGATTTGTGTTCAGTTTGACAATTAAGCCAGCGGTCGTCGTCGCACTGTCTC ATTGCAATTGAAACGCGAAGCGAAGCGGAAACTCCAAGAATATGAGACGACTCCACGCTGTCTGC CGCGAAATCAGCTCCACCACTCAATGTTGTCAACGGAAGCACGGCCTCGGTTTTTGGCCAAATGC ACAACGGAAAAATCGTTAATAAGACGCACAAGTTATGAAGGAAAAAGTGATGAAAAATTCAGGAA ACATTGTGATCTTTAAAGTGTTTAGTGCCAAATATATTGAAGGCTTCAATTTAGAGATTTTACTT AACGCTTTTTCCCATGTGCATTGCATTTTAATTTGCATTACCTCC Found at i:5463792 original size:7 final size:7 Alignment explanation
Indices: 5463780--5463793 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 5463770 ATTCAGATTT 5463780 AATTTTC 1 AATTTTC 5463787 AATTTTC 1 AATTTTC 5463794 GCTTTTTCCT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57 Consensus pattern (7 bp): AATTTTC Left flanking sequence: Indices 5463280 -- 5463779 TAAGCCCAAAAATATTATTCATCAACTTTTGCGCACACACCTTGAACGAAAGCCCTCCGCTTTTG TTTATGCAATGGAAAAGAGCAATCGCAGCTAGAGTTTCGGGCTGTTTAATTGCCGATTTGTGTTC AGTTTGACAATTAAGCCAGCGGTCGTCGTCGCACTGTCTCATTGCAATTGAAACGCGAAGCGAAG CGGAAACTCCAAGAATATGAGACGACTCCACGCTGTCTGCCGCGAAATCAGCTCCACCACTCAAT GTTGTCAACGGAAGCACGGCCTCGGTTTTTGGCCAAATGCACAACGGAAAAATCGTTAATAAGAC GCACAAGTTATGAAGGAAAAAGTGATGAAAAATTCAGGAAACATTGTGATCTTTAAAGTGTTTAG TGCCAAATATATTGAAGGCTTCAATTTAGAGATTTTACTTAACGCTTTTTCCCATGTGCATTGCA TTTTAATTTGCATTACCTCCAAAACGAACGGTGTAATTCAGATTT Right flanking sequence: Indices 5463794 -- 5464293 GCTTTTTCCTCTCGTGTCATTTAAGGTCCCATTTCGGTGGAGGATGAGGTTGACGTTGATGTGGT CGACTGCAGCGATGCCGAGGAGCCACCGACTAAGGCGCGTCGTTTGAACCATCATCAGCACCACC AGCATCACCAGCACCACCACAATAACAACAATAACAACAACAACAACAATGTGGCACACAAGAGT CGCAACAGCGGTGGCGCCGTGGCACAAACAGCTTCCGCCGAATCCCAACTGAACACCAGCTCGAC CAGCAGCCAAGGACGCTGCTCCACACCGCCCCAATCCCCGGGAACGGAGGACAGCGAGGAGCGTT TAACACCGGAACCGGTGCAGAAGGCACCCAAAATTGTCGGCTCCTGCAATTGCGACGATCTGAAG CCGGTGCAGTGCCATCTGGAGACCAAAGAGCTGTGGGATCGCTTTCACGATCTCGGCACCGAGAT GATCATCACCAAAACGGGCAGGTAAGCATCCAAACCAGCAACAAG Found at