TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_2L assembled 2004-4-6 md5checksum:29037f68a520aa000acffb8837e59820 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 22407834 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Warning! 100 characters in sequence are not A, C, G, or T Found at i: i:17601416 original size:9 final size:9 Alignment explanation
Indices: 17601402--17601423 Score: 37 Period size: 9 Copynumber: 2.4 Consensus size: 9 17601392 GCCAAGGTTG 17601402 TTGGTTAAA 1 TTGGTTAAA 17601411 TTGGTTAAA 1 TTGGTTAAA * 17601420 ATGG 1 TTGG 17601424 AAACTAATCG Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.32, C:0.00, G:0.27, T:0.41 Consensus pattern (9 bp): TTGGTTAAA Left flanking sequence: Indices 17600902 -- 17601401 AAATTGGTGGCGTTGGAAGGGAATCGAGATGGTTTGGTGCATATAAAGAAAAATTGGAGGATTTG TAAAATAATATTAATATTTTATTAGAGCCTTACGCACCTAGATATATAAATCCAAATTAAATATT TGAAATATTAATTTTTGAAAGTGACCAGCTTAATAACTTTTTTTAGCAATGATATGGCAATTTTT TAAAAATGTTCGCAATATTTTTGACAGTGATAATCTAAGTTCTGCTAAACGACACCGTGCATATT CGTCTTGGTTTCTAAAAAAGTCCACAACTACATAACGAAGGAAACCCGAAAGCGATTCAAACCCA AACTGACCGATAGTCGATTCAAAATGGACTCAAAGATAAAAGCGGTAAACAGGGCAAGGATAGAT AAATTATTTGCTTGCCATTTCCCTATGTGTTCAAACTTTTCCCACTTCCCAGTTTTCCTTAAAGT TTCTTCAATCGGTTACAATGCTCTTTTAAGTTGTGGCCAAGGTTG Right flanking sequence: Indices 17601424 -- 17601923 AAACTAATCGAAAAGAATTTGAAAATATTTAATTGAAATGGAGCTACTAAGATCTATTGGTAAAT AGGCCCAATATGATACCTTTTCATATAAAATATCAAAAGGTATAAAGGAATTAAAAATATTTTCC TGCATTACTTTCAATTAGATTGCAGTTTTGAAATATTTTAACAGTATGCGCTGTAATCTCTGTCG AACTTTTTGCATGTGCAACGTTTGTTTTTGTTTTATATGTGAATCAATGTCGGAGGATCGAATTC TGTTCTCATAACGCATTCGCTTTACAATGCATATCAGATTATGTACATATCTGATTTATTGATGG ACTCTGTCTGCCAATTGTCGCTACTTGTGAAATTTTTCACTCTATTCGCTTGCAATCGCAATCGG ATTCCTTTCGAGCAGCAGCTATCAATTTTTCACCGATAATGCTTCGCATCAAAGTCAGTTGGCAA TAAACTGGAAATGCGACTAACGAGTAAATTTAATTTTTAATTTCG Found at i:17601919 original size:7 final size:7 Alignment explanation
Indices: 17601907--17601921 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 17601897 AACGAGTAAA 17601907 TTTAATT 1 TTTAATT 17601914 TTTAATT 1 TTTAATT 17601921 T 1 T 17601922 CGTCGCACTC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73 Consensus pattern (7 bp): TTTAATT Left flanking sequence: Indices 17601407 -- 17601906 TAAATTGGTTAAAATGGAAACTAATCGAAAAGAATTTGAAAATATTTAATTGAAATGGAGCTACT AAGATCTATTGGTAAATAGGCCCAATATGATACCTTTTCATATAAAATATCAAAAGGTATAAAGG AATTAAAAATATTTTCCTGCATTACTTTCAATTAGATTGCAGTTTTGAAATATTTTAACAGTATG CGCTGTAATCTCTGTCGAACTTTTTGCATGTGCAACGTTTGTTTTTGTTTTATATGTGAATCAAT GTCGGAGGATCGAATTCTGTTCTCATAACGCATTCGCTTTACAATGCATATCAGATTATGTACAT ATCTGATTTATTGATGGACTCTGTCTGCCAATTGTCGCTACTTGTGAAATTTTTCACTCTATTCG CTTGCAATCGCAATCGGATTCCTTTCGAGCAGCAGCTATCAATTTTTCACCGATAATGCTTCGCA TCAAAGTCAGTTGGCAATAAACTGGAAATGCGACTAACGAGTAAA Right flanking sequence: Indices 17601922 -- 17602421 CGTCGCACTCTTTGTCTATCTCAATGCCATTTGGTCTCTGCATCATTTCGCTTTTATTTGCTACT GCATTCCCAGTCGCCTTTTCCCCCTCCACAGTCATGAGTCCTCGGTTCTGGCCAGTTTCAAAAGC TTGTCAGCGGAAAACGTAAACTAACGACAATTTCGTTTTCTTATTTACACAATCAATTTCGTGCT TTTGTGATCCACGGGCGAGGGCAGGCCGGAGTGAAGAAGAAGAACCACAGCGAGTCCTTCTGCAA GATCTCCTTGCACATCCTTCTTGCCGAGCGACATTGCGTGTGAATGTGAATACACATCCGCCATA TCTCTGGACTTTCCTCTGCAATACTCTTACAAATGGGGTGTACTGACTACTGCATAGATAATAAT TCTGCATTTCGAAAACTTATATCTACTATAAATACATCTAATGCTAGTACTACATGCTAATATAA ATATAAATGCGTTTTTTCTTAGTTGAAAAATGTTATTTTCGGTTT Found at i:17602787 original size:9 final size:9 Alignment explanation
Indices: 17602758--17602788 Score: 48 Period size: 9 Copynumber: 3.4 Consensus size: 9 17602748 AGGGTGGGCA * 17602758 TTGGGTGGC 1 TTGGGTGGT 17602767 TTGGGTGGT 1 TTGGGTGGT * 17602776 TTGGGTGTT 1 TTGGGTGGT 17602785 TTGG 1 TTGG 17602789 AGCCAGTCCC Statistics Matches: 20, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 9 20 1.00 ACGTcount: A:0.00, C:0.03, G:0.52, T:0.45 Consensus pattern (9 bp): TTGGGTGGT Left flanking sequence: Indices 17602258 -- 17602757 TCCTCTGCAATACTCTTACAAATGGGGTGTACTGACTACTGCATAGATAATAATTCTGCATTTCG AAAACTTATATCTACTATAAATACATCTAATGCTAGTACTACATGCTAATATAAATATAAATGCG TTTTTTCTTAGTTGAAAAATGTTATTTTCGGTTTCATTTGTCCTATAAATCAAATTAAATCCTTT TTTTATCAGTTCTGATCTTTGGAGGGTATCTCATCCTCAACGCCTAAAGGGCATCCAAAACTGCG ACCCATCGATCAGGAATTCTCTTTTTGTTTTCTGGACTCGGCACTCCCGTTGTATCCTTAAGTTT CATTGCCGTCTAGCTTTAGATTCGGCAGTGGCTATGGCAATGGCGTGGCACTACCTACAACTAGC TACTGTTGCTTTGCTCTTGCTGCTGCCGTTAGTGCCGCGAGGGAAATTGTCGTCAAAGTGGAAAA AATGTCACATTGTTGTTCTAGCCGTCATGGAGATGAGGGTGGGCA Right flanking sequence: Indices 17602789 -- 17603288 AGCCAGTCCCAGACTTGCCACACGTTGCATGTGTGTTGCAGTGGCAGTAATAGTTCTAGTTTCGT TTTGCTTTCCTTTCGATGGTCCCTTCTTCCGCTTATCCACCTCTTTCTTTTCCTCTCCTCTCCTT TATTTTCATTTTTTTTATCCTCCTTTTGATGTTGACCGCATTCGTTGGATCGTTTCGCTGGCTGA GTTCGCTTTTTGGGGGTCTGCCTTTATTGTTTATGCAACTGTCAGCAGTTTTCGCTTCTCGTTCG ACCCAAGTTTTTCCAATCTCCTACTCAGCCCCGCCCCCTGGCAGATTTCCCTGGCTATAAACGAG TGTGTGTTGGTTGGTGTATGTAGGTGTTTGCTTTGTATCTCTGTGCGACTTCCATATTTGTTGTC ATTTCGAATTGTTTCAATGACTTTTGACAGCGAGCAGATTAGCTCGGCGACGCCTTCGCCGAATT TTCCACCAATAGCCAACCCGTTTTTCAATAGTCGGGGGAAATCAG Found at i:17606068 original size:7 final size:7 Alignment explanation
Indices: 17606052--17606068 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 17606042 GATTAAACTA * 17606052 TATTTTT 1 TATTTAT 17606059 TATTTAT 1 TATTTAT 17606066 TAT 1 TAT 17606069 CACTACCTCT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76 Consensus pattern (7 bp): TATTTAT Left flanking sequence: Indices 17605552 -- 17606051 CCTGACGACACGCCCCTCAAAAGTGAAGTGGGCGGTGGGTGTTTGGGCGTAGGACATCCAGAGAA CATTTGTAGTTTGCATTTTGCAGATGTGATGTGGATGGCCAGGCAGAAGCAAACATGCCAAGTCG CAGCGCTGGAAATCTTAACGTGATTTAAGCCACGAAACGGGTGAAAGGAATGAAATGAGGAGGAT TGCGGCGGGGCTAAAAGGAGGTGCTGCGGCTGACAGAGAACGATGGAGGAGCAAGCGAAGTAAGG AGCACGAAGGAATGGCATTTGGTGGCCACTCAATTGGCACGTCATGGGGCCAAAAGAGGAGGGAA AGTGACAGGATCGCTTGCCTACCAATACACTACAAATGTGGCTGACACAGCTTGTTCCGTTGAGA TATACTTTGTATCTTTTAATAAGGATATAAAAAAAAATTAACTAAACTTATATTCCTTATGAGTG TCATTTTAATTTTGTTAGAATATATGAAGAGAATCGATTAAACTA Right flanking sequence: Indices 17606069 -- 17606568 CACTACCTCTTATCTTTTGATTTTTTGGGGACTGCTTCTTTTTATCGGTGTACTTGCTTGACTTC ATTCTGATGTTTTGACAATGGCTCTGCTGCTGATGTGGGGTGTTGCCGTTGCAGTTGCTGCTGCT GCTGCTGCTGCAGTTGCAATTGCTGTTGCCGTGGTAGCTGCCGTCTCGAATCGCAGCCAAACGGA CTCAGTACCCTAATCAGCAGCAGCCATGCAATACCGCTCTGACTTTGATGCACTCACTATTTATG TGCATACCCATGAAGGGGGCGAATTGCCACGCCCCCCCAGGCAACAACCGTCCTGCCTTTAGATC GGCACTCCTTGGAAATTGCACGTGACACAAATAGGTAATTGCACTTTGGGCAAAAGTGTGACACG CAGACATCATTCAATGGAGATCAAGGAGCGGTGCGGATAATGTGGACAGCGGTGCTCCGGTTGCG GCTCCTGCTCCTGACACTCCGGCAGGCAATATGTTTTCTTTAGCG Found at i:17607104 original size:9 final size:9 Alignment explanation
Indices: 17607090--17607108 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 17607080 GTAATTTAGC 17607090 CACCTGCCG 1 CACCTGCCG * 17607099 CACCTGTCG 1 CACCTGCCG 17607108 C 1 C 17607109 CACGCATTTT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.11, C:0.53, G:0.21, T:0.16 Consensus pattern (9 bp): CACCTGCCG Left flanking sequence: Indices 17606590 -- 17607089 GATGGATTTCCCATTTTCCGAGCCAAGCACTCCAGTCCCGAGCTGAAGAAGATTAGGCCTTGGCT GTGTAATCAAGTATAAATGCATGTCTATGTTAAGTTGCTCTTAAAGTTTGTCAAGCGCTTCACGA ACGTAAATAGTTTTGGCACAGGGAATTGGAATTTAATCAAGTCATTTATTAAATTTTAATATAAT ATTTCCCGACAAATATTTCTTTCATTAAACTTGCTAAGTAGGTCAGGTCAGGTGTAGTTTAATTC CACTGGAATTTGGGATGCACAAAGTTTAAAGTTGTTCGACAACTGTGGTCAAGTTATGAAACATT CACTCAATAATTCACTGAAACACAAGCCAATTGCATTAAATCCGCTATTAGCTGTTGCACACAAA CAATACACCTCGGTGCACGTTCAATGTCAAAGTTATGCAATCCTCCGCAAATCCTTCCACCCATC TGCACATAGCCCCACCAGAGTGTTCCTTCCTTATCGTAATTTAGC Right flanking sequence: Indices 17607109 -- 17607608 CACGCATTTTCCCTCGGCCTTGTCACCGAATTGTTCCAGTTTGTTATCAGGCCGACTCTTGCACA TTTGGGCGGGCCAACACCTAATACAACCCAAAATGGCCAAAACAGGCGCCTACACAATGGCACAA TGGCACTGCGATTTGTGTTTAACAATTTGTAGTTCGTGTTTTGCTTGTCGCCGCAAGCGTTGCTG ATTTCACTTATCGCGCCTCGCCCACGCGGAAATTCCCGTGAAAACAAGCAAATACATTGGCCAAA CACTTGCAAAATTATTTTCACAATTTTGGTACTGTTTCTATAACTGTCCAGTACCTAAATACGAA CGAAGATGCTTCGAATTTTCACCTTAAAAATATTAAGAAAGTAATTGTTACAAAATTACAAAGAA ATATGACTTTTTAGAAATACTTATAGAAATTATAACTGAATTTTTGCTTACTGTTTCTTATACAC TCTTAGTTTTACCTGTAATTATTTTTTTTTATTAATTTATTTATA Found at i:17607239 original size:8 final size:8 Alignment explanation
Indices: 17607226--17607244 Score: 38 Period size: 8 Copynumber: 2.4 Consensus size: 8 17607216 CAGGCGCCTA 17607226 CACAATGG 1 CACAATGG 17607234 CACAATGG 1 CACAATGG 17607242 CAC 1 CAC 17607245 TGCGATTTGT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.37, C:0.32, G:0.21, T:0.11 Consensus pattern (8 bp): CACAATGG Left flanking sequence: Indices 17606726 -- 17607225 ATAGTTTTGGCACAGGGAATTGGAATTTAATCAAGTCATTTATTAAATTTTAATATAATATTTCC CGACAAATATTTCTTTCATTAAACTTGCTAAGTAGGTCAGGTCAGGTGTAGTTTAATTCCACTGG AATTTGGGATGCACAAAGTTTAAAGTTGTTCGACAACTGTGGTCAAGTTATGAAACATTCACTCA ATAATTCACTGAAACACAAGCCAATTGCATTAAATCCGCTATTAGCTGTTGCACACAAACAATAC ACCTCGGTGCACGTTCAATGTCAAAGTTATGCAATCCTCCGCAAATCCTTCCACCCATCTGCACA TAGCCCCACCAGAGTGTTCCTTCCTTATCGTAATTTAGCCACCTGCCGCACCTGTCGCCACGCAT TTTCCCTCGGCCTTGTCACCGAATTGTTCCAGTTTGTTATCAGGCCGACTCTTGCACATTTGGGC GGGCCAACACCTAATACAACCCAAAATGGCCAAAACAGGCGCCTA Right flanking sequence: Indices 17607245 -- 17607744 TGCGATTTGTGTTTAACAATTTGTAGTTCGTGTTTTGCTTGTCGCCGCAAGCGTTGCTGATTTCA CTTATCGCGCCTCGCCCACGCGGAAATTCCCGTGAAAACAAGCAAATACATTGGCCAAACACTTG CAAAATTATTTTCACAATTTTGGTACTGTTTCTATAACTGTCCAGTACCTAAATACGAACGAAGA TGCTTCGAATTTTCACCTTAAAAATATTAAGAAAGTAATTGTTACAAAATTACAAAGAAATATGA CTTTTTAGAAATACTTATAGAAATTATAACTGAATTTTTGCTTACTGTTTCTTATACACTCTTAG TTTTACCTGTAATTATTTTTTTTTATTAATTTATTTATAATTAATTTTATATTTTTTCGACTGCA GAGAACAATAACAGAAAGGACGGTTGACATGGCTACTGTAGTCACAGTTCAAAATGCGTTCAAAA CGTCAATGTTGCTGTTGCATTTACTGGGCGCACTTTTTGGGTGTG Found at i:17609775 original size:9 final size:9 Alignment explanation
Indices: 17609761--17609784 Score: 34 Period size: 9 Copynumber: 2.7 Consensus size: 9 17609751 CACGCTTGTC * 17609761 TGCGGCTTT 1 TGCGGCTGT 17609770 TGCGGCTGT 1 TGCGGCTGT * 17609779 TGTGGC 1 TGCGGC 17609785 GACGTCCTAG Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 9 13 1.00 ACGTcount: A:0.00, C:0.21, G:0.42, T:0.38 Consensus pattern (9 bp): TGCGGCTGT Left flanking sequence: Indices 17609261 -- 17609760 GGCGTTTAGCCAATTTGAAATCAAAGCAGTTGAAGCCCCGACTAATTAACTGAAATTCACAAAGT AAAGACCATGGCAAATATAAGCAAACCACTTGTTTGACTTTTGCAAATTAATTATTTAATTTAAA GTAAACATTTTGAAAGTACACAACTGAGTAGACAAGGCCAATTAAAATTGGCCGGAAAGTGACTG GCAGACGGTGTGCGATGGAAACAGCAAAAAAAAAAAAAAAAAAAAAACAGTCAAAAACAAAATGT TTGCGCAAACGAATTGTAAAACAGAATATGAGCAAATTTGCCATCAGCAACTTAAGACAGAATTT TTATGCGAGAAATGAGCGCAAACAATGTGCGTTGTCCATTTCCTCTGGTCTGGTCTGGTCTGGTT GGCCGGAATTCTCGCATTTTCCGGCTGAACGCTTGCAGACCAAAACTGAATTTATAAACCAAAAA TGCATGATAGCCGAAGCCCCCCGTTTCCCCTCTCCCACGCTTGTC Right flanking sequence: Indices 17609785 -- 17610284 GACGTCCTAGCCACAGCAACAACAAAACGGCAAAAAACGAGATAGAGCAACTAAAGCCACCAGAA TTATCATTACGGCGGCAAAAATCTCTTGGCAGTTTTCCGGACTTTCACGCTGCCATCCGTTTTAT TTCACATTTGCCGTTTTGCGGGAGCTCAATTTTTTCAATTTTTAGTTTATTCCGAGGCGAACGAT AAAATTGGGTGGGCGTGGCCTCTGGCCAGTAAAAAAACAAAAAAAAAAAAAAAAAGACTGAAATA CGCCCAAAATTATTAGTCGAGCTCTCATCTTTTTCGCGTCTTCTCCACCGGCTTGTGTTTTATGG CCCACTCGCCAAGAGCCAACTGAATGCGGGTAACTGAACTTGCAGCTGGCCGAGGATGGGAAATT CATTTAGCGAATTAAATCGATGGGAAAATACGCTATTCCAAAGTTTTTGCGTTGCCAACGAAATA CTTTCGTCTTTTTTTTTTTTGAAAAAGTCATTCACTTGTATGTAT Found at i:17609954 original size:9 final size:9 Alignment explanation
Indices: 17609940--17609957 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 17609930 TTGCGGGAGC 17609940 TCAATTTTT 1 TCAATTTTT 17609949 TCAATTTTT 1 TCAATTTTT 17609958 AGTTTATTCC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.22, C:0.11, G:0.00, T:0.67 Consensus pattern (9 bp): TCAATTTTT Left flanking sequence: Indices 17609440 -- 17609939 GGCCGGAAAGTGACTGGCAGACGGTGTGCGATGGAAACAGCAAAAAAAAAAAAAAAAAAAAAACA GTCAAAAACAAAATGTTTGCGCAAACGAATTGTAAAACAGAATATGAGCAAATTTGCCATCAGCA ACTTAAGACAGAATTTTTATGCGAGAAATGAGCGCAAACAATGTGCGTTGTCCATTTCCTCTGGT CTGGTCTGGTCTGGTTGGCCGGAATTCTCGCATTTTCCGGCTGAACGCTTGCAGACCAAAACTGA ATTTATAAACCAAAAATGCATGATAGCCGAAGCCCCCCGTTTCCCCTCTCCCACGCTTGTCTGCG GCTTTTGCGGCTGTTGTGGCGACGTCCTAGCCACAGCAACAACAAAACGGCAAAAAACGAGATAG AGCAACTAAAGCCACCAGAATTATCATTACGGCGGCAAAAATCTCTTGGCAGTTTTCCGGACTTT CACGCTGCCATCCGTTTTATTTCACATTTGCCGTTTTGCGGGAGC Right flanking sequence: Indices 17609958 -- 17610457 AGTTTATTCCGAGGCGAACGATAAAATTGGGTGGGCGTGGCCTCTGGCCAGTAAAAAAACAAAAA AAAAAAAAAAAAGACTGAAATACGCCCAAAATTATTAGTCGAGCTCTCATCTTTTTCGCGTCTTC TCCACCGGCTTGTGTTTTATGGCCCACTCGCCAAGAGCCAACTGAATGCGGGTAACTGAACTTGC AGCTGGCCGAGGATGGGAAATTCATTTAGCGAATTAAATCGATGGGAAAATACGCTATTCCAAAG TTTTTGCGTTGCCAACGAAATACTTTCGTCTTTTTTTTTTTTGAAAAAGTCATTCACTTGTATGT ATGGAAGTTTTTGATTTAGTTAAAGTAGAAATGTTTGGCTAATTATAATCGTCATCTTAAGCTGT TGCTGCGACGTAAATGCATCGAAAAATACTCTTTCCATTCGTGGATACAACAATTTCTCATTGCA CTGGAATTTATGGCTATCGGCCGCCGAGGCTAGCAAACATTGAAC Found at i:17611387 original size:8 final size:8 Alignment explanation
Indices: 17611371--17611394 Score: 34 Period size: 8 Copynumber: 3.1 Consensus size: 8 17611361 GTGGCTAAGT * 17611371 AGCCTCCC 1 AGCCACCC 17611379 AGCCACCC 1 AGCCACCC 17611387 A-CCACCC 1 AGCCACCC 17611394 A 1 A 17611395 CAGCCCATCG Statistics Matches: 15, Mismatches: 1, Indels: 1 0.88 0.06 0.06 Matches are distributed among these distances: 7 7 0.47 8 8 0.53 ACGTcount: A:0.25, C:0.62, G:0.08, T:0.04 Consensus pattern (8 bp): AGCCACCC Left flanking sequence: Indices 17610871 -- 17611370 GAAATGTACACGAATTTTTTTCTAATCTCAGTCGTGTATATTATTAGACATACCTTTCGTGTCAA CCAAAATTTTGATTGGATGATGAAATACACAAAATTTGTGTTCTTTATCTCTTGGAATTGCAATA ACCGCTTACAGTTGTAAGCGAATTAAGCCTTAATCATCTTATTGGTTTCAAAATAAACACTCTCT ACCTTTCATTTCCAGAGCCTTTTCCCTTTCAAAATCACCTTACCACTTTGACTTTGAGTGTGATT TTGCTTGGCGTTTTCGTGTGCTCCCCCTTTCGGAAATGCTACTGCCATTCCATTTAAATACGCAT ATCATTTGTACTGCCATAAGAGGAATGTTCCTTCTCATTCTCAGTGAACGAGCCCCACATTCACG TTCCCGTTCCCCAGTTACCAAATGAGCTTAAGCTAACAGGGTTTTGTGGATTTTCCAGCATTACG GCCTGGCATGTAATCGTATAGCAGGCGAAGGGTGCGTGGCTAAGT Right flanking sequence: Indices 17611395 -- 17611894 CAGCCCATCGCCCATCGCCCACATGTGTTGTGACTGTCTCGTCTGCTTTTGAGAGCCTGTGAAAA TTGCTAAAGTATTGCTAAACTCATTTCCTAATGTCAATGGGAGGCGAAGAGATTGAGTGGGTAAT AAAGAGTGAAAGCGAATTTGAAATGCTCTTTAACGAAGTGTTGCGTTTTGAACTAAGCAACTTTT ATTTGTCTATAATTTAGTTACAATATTGCTATACATTTACAAATAATAATCCTAGTTCAATAATT ATATTCAGTAATAAGTATTAATAAAGTTAGAGTGTTTAAGTTTGTGGCACAGTAATAAGAGATGG AGTTTCGAGTAAGGACACCCTTTGCATATCCCTGATTTATATGCGGATCTCGCCGGGAGCGCCTT GCATCTGCATGTTTTCGATTATTTGTTTGCCTCAAATGTGTTTATTGGTCTCGGCACATAATAAA ATTATTTATTGCAGTATAAAAAGTATAAAATGAGAGGAAAATACA Found at i:17611393 original size:7 final size:7 Alignment explanation
Indices: 17611376--17611395 Score: 31 Period size: 7 Copynumber: 2.7 Consensus size: 7 17611366 TAAGTAGCCT 17611376 CCCAGCCA 1 CCCA-CCA 17611384 CCCACCA 1 CCCACCA 17611391 CCCAC 1 CCCAC 17611396 AGCCCATCGC Statistics Matches: 12, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 7 8 0.67 8 4 0.33 ACGTcount: A:0.25, C:0.70, G:0.05, T:0.00 Consensus pattern (7 bp): CCCACCA Left flanking sequence: Indices 17610876 -- 17611375 GTACACGAATTTTTTTCTAATCTCAGTCGTGTATATTATTAGACATACCTTTCGTGTCAACCAAA ATTTTGATTGGATGATGAAATACACAAAATTTGTGTTCTTTATCTCTTGGAATTGCAATAACCGC TTACAGTTGTAAGCGAATTAAGCCTTAATCATCTTATTGGTTTCAAAATAAACACTCTCTACCTT TCATTTCCAGAGCCTTTTCCCTTTCAAAATCACCTTACCACTTTGACTTTGAGTGTGATTTTGCT TGGCGTTTTCGTGTGCTCCCCCTTTCGGAAATGCTACTGCCATTCCATTTAAATACGCATATCAT TTGTACTGCCATAAGAGGAATGTTCCTTCTCATTCTCAGTGAACGAGCCCCACATTCACGTTCCC GTTCCCCAGTTACCAAATGAGCTTAAGCTAACAGGGTTTTGTGGATTTTCCAGCATTACGGCCTG GCATGTAATCGTATAGCAGGCGAAGGGTGCGTGGCTAAGTAGCCT Right flanking sequence: Indices 17611396 -- 17611895 AGCCCATCGCCCATCGCCCACATGTGTTGTGACTGTCTCGTCTGCTTTTGAGAGCCTGTGAAAAT TGCTAAAGTATTGCTAAACTCATTTCCTAATGTCAATGGGAGGCGAAGAGATTGAGTGGGTAATA AAGAGTGAAAGCGAATTTGAAATGCTCTTTAACGAAGTGTTGCGTTTTGAACTAAGCAACTTTTA TTTGTCTATAATTTAGTTACAATATTGCTATACATTTACAAATAATAATCCTAGTTCAATAATTA TATTCAGTAATAAGTATTAATAAAGTTAGAGTGTTTAAGTTTGTGGCACAGTAATAAGAGATGGA GTTTCGAGTAAGGACACCCTTTGCATATCCCTGATTTATATGCGGATCTCGCCGGGAGCGCCTTG CATCTGCATGTTTTCGATTATTTGTTTGCCTCAAATGTGTTTATTGGTCTCGGCACATAATAAAA TTATTTATTGCAGTATAAAAAGTATAAAATGAGAGGAAAATACAA Found at i:17611401 original size:7 final size:7 Alignment explanation
Indices: 17611391--17611417 Score: 26 Period size: 7 Copynumber: 3.9 Consensus size: 7 17611381 CCACCCACCA 17611391 CCCACAG 1 CCCACAG ** 17611398 CCCATCG 1 CCCACAG ** 17611405 CCCATCG 1 CCCACAG 17611412 CCCACA 1 CCCACA 17611418 TGTGTTGTGA Statistics Matches: 16, Mismatches: 4, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 7 16 1.00 ACGTcount: A:0.22, C:0.59, G:0.11, T:0.07 Consensus pattern (7 bp): CCCACAG Left flanking sequence: Indices 17610891 -- 17611390 TCTAATCTCAGTCGTGTATATTATTAGACATACCTTTCGTGTCAACCAAAATTTTGATTGGATGA TGAAATACACAAAATTTGTGTTCTTTATCTCTTGGAATTGCAATAACCGCTTACAGTTGTAAGCG AATTAAGCCTTAATCATCTTATTGGTTTCAAAATAAACACTCTCTACCTTTCATTTCCAGAGCCT TTTCCCTTTCAAAATCACCTTACCACTTTGACTTTGAGTGTGATTTTGCTTGGCGTTTTCGTGTG CTCCCCCTTTCGGAAATGCTACTGCCATTCCATTTAAATACGCATATCATTTGTACTGCCATAAG AGGAATGTTCCTTCTCATTCTCAGTGAACGAGCCCCACATTCACGTTCCCGTTCCCCAGTTACCA AATGAGCTTAAGCTAACAGGGTTTTGTGGATTTTCCAGCATTACGGCCTGGCATGTAATCGTATA GCAGGCGAAGGGTGCGTGGCTAAGTAGCCTCCCAGCCACCCACCA Right flanking sequence: Indices 17611418 -- 17611917 TGTGTTGTGACTGTCTCGTCTGCTTTTGAGAGCCTGTGAAAATTGCTAAAGTATTGCTAAACTCA TTTCCTAATGTCAATGGGAGGCGAAGAGATTGAGTGGGTAATAAAGAGTGAAAGCGAATTTGAAA TGCTCTTTAACGAAGTGTTGCGTTTTGAACTAAGCAACTTTTATTTGTCTATAATTTAGTTACAA TATTGCTATACATTTACAAATAATAATCCTAGTTCAATAATTATATTCAGTAATAAGTATTAATA AAGTTAGAGTGTTTAAGTTTGTGGCACAGTAATAAGAGATGGAGTTTCGAGTAAGGACACCCTTT GCATATCCCTGATTTATATGCGGATCTCGCCGGGAGCGCCTTGCATCTGCATGTTTTCGATTATT TGTTTGCCTCAAATGTGTTTATTGGTCTCGGCACATAATAAAATTATTTATTGCAGTATAAAAAG TATAAAATGAGAGGAAAATACAAATGCCCGTAATCATTTTTCGCT Found at i:17611876 original size:9 final size:9 Alignment explanation
Indices: 17611862--17611879 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 17611852 TATTTATTGC 17611862 AGTATAAAA 1 AGTATAAAA 17611871 AGTATAAAA 1 AGTATAAAA 17611880 TGAGAGGAAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.67, C:0.00, G:0.11, T:0.22 Consensus pattern (9 bp): AGTATAAAA Left flanking sequence: Indices 17611362 -- 17611861 TGGCTAAGTAGCCTCCCAGCCACCCACCACCCACAGCCCATCGCCCATCGCCCACATGTGTTGTG ACTGTCTCGTCTGCTTTTGAGAGCCTGTGAAAATTGCTAAAGTATTGCTAAACTCATTTCCTAAT GTCAATGGGAGGCGAAGAGATTGAGTGGGTAATAAAGAGTGAAAGCGAATTTGAAATGCTCTTTA ACGAAGTGTTGCGTTTTGAACTAAGCAACTTTTATTTGTCTATAATTTAGTTACAATATTGCTAT ACATTTACAAATAATAATCCTAGTTCAATAATTATATTCAGTAATAAGTATTAATAAAGTTAGAG TGTTTAAGTTTGTGGCACAGTAATAAGAGATGGAGTTTCGAGTAAGGACACCCTTTGCATATCCC TGATTTATATGCGGATCTCGCCGGGAGCGCCTTGCATCTGCATGTTTTCGATTATTTGTTTGCCT CAAATGTGTTTATTGGTCTCGGCACATAATAAAATTATTTATTGC Right flanking sequence: Indices 17611880 -- 17612379 TGAGAGGAAAATACAAATGCCCGTAATCATTTTTCGCTGAGGCATCTACGTGTCGCTGCTCATGT TCCTTTTCAATTTGCATTCGCATGTTGCCCCATAAATACATAAAAGCCATGCCAAACAAAATAAA TAAAATTAAAATAAAAATTTATAAAAGCAAGTGTGCCGGGGCGTGGCAAAGGGGAAGTTCAGGAT TTACTTTACACATGTGTGTGTGTGTGTGTGTGTGTGTGAATTGCGATGGGTGGTTTTATTGTTTA TCAATATAAAGCTCGTAAAATACCTGAACGGAGCAGCAAACCTGGCTGAATGTGCCTGTGTGTTT GTTAGAGATGAGCGATTTATGTGGCAAAGGTTATTCCGGAGGAGCAAAAATGGGGAGACATGTTA TAAAGTGAGATCACTAGGAGATTATCTGATTATGCGAGTAAGATTGCTTACGGATTTGCTGCTTA TTGAACTCATAAAGTGTGATATTGTTAAATATATACTCTTGTTAT Found at i:17612758 original size:9 final size:9 Alignment explanation
Indices: 17612741--17612758 Score: 29 Period size: 9 Copynumber: 2.0 Consensus size: 9 17612731 GAATATACCC * 17612741 CTTTGGGTT 1 CTTTCGGTT 17612750 CTTTCGGTT 1 CTTTCGGTT 17612759 GGCTTTGGGC Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 8 1.00 ACGTcount: A:0.00, C:0.17, G:0.28, T:0.56 Consensus pattern (9 bp): CTTTCGGTT Left flanking sequence: Indices 17612241 -- 17612740 CGGAGGAGCAAAAATGGGGAGACATGTTATAAAGTGAGATCACTAGGAGATTATCTGATTATGCG AGTAAGATTGCTTACGGATTTGCTGCTTATTGAACTCATAAAGTGTGATATTGTTAAATATATAC TCTTGTTATCCAATTTTATTATTACTTGAGTATGTTTTGGTTTAAGGCACAGTTAAAAGTATGGC CTGTATATTTATACGGATTATGTTCTAAAACAACATTCTTTTGCTTAAGAGACTTTTTAGGAAAT CCCAACAACTTTCTTAATTTAGTTAGGCTTGCATTATGTATTACTATCAAATTTTTCCCAAGTGT GACTTTCATGAAATGTATTAATCCTTGTTCGTCCCCTTTACATAATTGAAAAATTTCTAATGGCC TTTTCAGGTTTATTGGGCACATACGTCGTTGAATATGTAAAAGCCAGCTCAAAAAGTCGGCCTAA AGAGAATAAGACGCTTTTATACACTTGCAATCCATGAATATACCC Right flanking sequence: Indices 17612759 -- 17613258 GGCTTTGGGCCATGCGTTATGCTCATTTGACGCTGCCAGCGACTGTTGCTGTTTTGTTTGGCCTG CCTCTGAAATATAGTTACACAAAATGTTGTTGCATACTTTTGCGGCAAGGAGTCGGGAAAGTCCT TTGTTTCCCGGCTCGCTCCGTCACATTTCGCCGAGTGTGTGTGCGTTATAATTCTAGTTTATGCC TGGGGGCGTCATTCACATAAAGTGCTTATGCGTCTATGTCGCTTTGTCATTTGCCTCCCACTCGG TCTACTTTGGTGTAAATAATATTAGCACTAAACAGACGACAACAGTGGAGAGCCGGGGGATACCA GCTCACTGGTATGCATATGCAGGAGCACCCGGATCCATTCCATTGCCATGAGAGACCCCGTCGGA AGATGACGGGCCATGACGGACCATGGCTGGGGATCTAAGTACATATAGCCCCGGAGCAATAAACT TTTCATTAGCAAGTCAGTTTGTTGTTTGCTGTGACAAAAGGCTTT Found at i:17613166 original size:10 final size:10 Alignment explanation
Indices: 17613151--17613173 Score: 39 Period size: 10 Copynumber: 2.3 Consensus size: 10 17613141 CCGTCGGAAG * 17613151 ATGACGGGCC 1 ATGACGGACC 17613161 ATGACGGACC 1 ATGACGGACC 17613171 ATG 1 ATG 17613174 GCTGGGGATC Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 10 12 1.00 ACGTcount: A:0.26, C:0.26, G:0.35, T:0.13 Consensus pattern (10 bp): ATGACGGACC Left flanking sequence: Indices 17612651 -- 17613150 ATACGTCGTTGAATATGTAAAAGCCAGCTCAAAAAGTCGGCCTAAAGAGAATAAGACGCTTTTAT ACACTTGCAATCCATGAATATACCCCTTTGGGTTCTTTCGGTTGGCTTTGGGCCATGCGTTATGC TCATTTGACGCTGCCAGCGACTGTTGCTGTTTTGTTTGGCCTGCCTCTGAAATATAGTTACACAA AATGTTGTTGCATACTTTTGCGGCAAGGAGTCGGGAAAGTCCTTTGTTTCCCGGCTCGCTCCGTC ACATTTCGCCGAGTGTGTGTGCGTTATAATTCTAGTTTATGCCTGGGGGCGTCATTCACATAAAG TGCTTATGCGTCTATGTCGCTTTGTCATTTGCCTCCCACTCGGTCTACTTTGGTGTAAATAATAT TAGCACTAAACAGACGACAACAGTGGAGAGCCGGGGGATACCAGCTCACTGGTATGCATATGCAG GAGCACCCGGATCCATTCCATTGCCATGAGAGACCCCGTCGGAAG Right flanking sequence: Indices 17613174 -- 17613673 GCTGGGGATCTAAGTACATATAGCCCCGGAGCAATAAACTTTTCATTAGCAAGTCAGTTTGTTGT TTGCTGTGACAAAAGGCTTTAAATGGTACAGTAGCGACTCGATATAGTTATCGGGGATTTTGCTT TATAGTGCCATATAGTTTAAAAATATATTGCTGCATATGTTTAGACATCTTATATCTAAATAATA AAGAAGATAAATATTGGCAAATTTATTCGACAAAAAATTAAAAATATTTATTAATTATTTAGATT ATGAATCGTTGAATGGCTGGTACTTTAAAATGTTTTTGGATACATGAAAATTATAATTGGCTAAC TTCTACTGTGCTTAAGTGCGAAACTCTTGCCACGCAGCAGCGACATAAATTTGTCAAAGGTTTTT GCCCTGCTCCTTTTTATGCGATGCAGCGCAGGGACTATAATTGTTTTATGTTCTTTTCGTTTTTA CTGTCCGCAAATAACTATTACCGCGCAAATGGAGTGTGCCTAGGC Found at i:17613806 original size:10 final size:9 Alignment explanation
Indices: 17613787--17613806 Score: 31 Period size: 10 Copynumber: 2.1 Consensus size: 9 17613777 ACTTTGCCGG 17613787 AATTGTTGA 1 AATTGTTGA 17613796 AATTAGTTGA 1 AATT-GTTGA 17613806 A 1 A 17613807 GGACTAAGCT Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 9 4 0.40 10 6 0.60 ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40 Consensus pattern (9 bp): AATTGTTGA Left flanking sequence: Indices 17613287 -- 17613786 TATCGGGGATTTTGCTTTATAGTGCCATATAGTTTAAAAATATATTGCTGCATATGTTTAGACAT CTTATATCTAAATAATAAAGAAGATAAATATTGGCAAATTTATTCGACAAAAAATTAAAAATATT TATTAATTATTTAGATTATGAATCGTTGAATGGCTGGTACTTTAAAATGTTTTTGGATACATGAA AATTATAATTGGCTAACTTCTACTGTGCTTAAGTGCGAAACTCTTGCCACGCAGCAGCGACATAA ATTTGTCAAAGGTTTTTGCCCTGCTCCTTTTTATGCGATGCAGCGCAGGGACTATAATTGTTTTA TGTTCTTTTCGTTTTTACTGTCCGCAAATAACTATTACCGCGCAAATGGAGTGTGCCTAGGCAGA AAGTAGGCGTGGCATCGTGATATGTTTACTGAAATTTTAGGCTCTACAGTAAAGGAGAAACTTGG CTTTAAATGTTATGGAAAACCACAATAAAACAGAGACTTTGCCGG Right flanking sequence: Indices 17613807 -- 17614306 GGACTAAGCTAATTACCAACTGCCTTTTCGTGTTGAAAACAGTTTTCCTCCAGTTTCCCCTCCGA TTTCCGTTTCCTCGATTTCCTCTGCTATCTGGGCAAAGCACTCTTCAGATCATTTGAATAAGCTC TAGTCAAGTCGCGAAAATTTGCAATGCTAACCCATGTAGGTTTGCCAACCCAAACAAGAATGTAT TCCACAGTGGGGTGATAATTGGTTTTTGGAAAAACGTGAGTTTACAGAAAATATAGTAAACAAGT TTTTTTTAGATACCAAGAATATTTTTATATGACCTCGTACTTTTTTAACCTATTCGATTGCCACT TTGTTAATATGTTCATACTATAAATGGATCATTATTAACTGTAATCCTTTTTATTTAAAATTATA AAGCTTTATGCCAATAAATAGACTTAAAGTCAATTTTTCCAAAGAATAAATTTAAACAATCCAGA GAAAAAAAAAACAAATCAAATTGCATAATCCGAACCACTGTTCAC Found at i:17615880 original size:7 final size:7 Alignment explanation
Indices: 17615860--17615881 Score: 30 Period size: 7 Copynumber: 3.1 Consensus size: 7 17615850 TATATTGTTA * 17615860 ATTAATT 1 ATTTATT 17615867 ATTTATT 1 ATTTATT * 17615874 CTTTATT 1 ATTTATT 17615881 A 1 A 17615882 AGTTAAAATA Statistics Matches: 12, Mismatches: 3, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64 Consensus pattern (7 bp): ATTTATT Left flanking sequence: Indices 17615360 -- 17615859 GGTATTTTTCCGTTTTTTTTGGTTACCACAAACATTCCAAAGGCATCGTCACGACTTGCTCTTGT TCTTGTCGCTGCTCAGAGTGCCATTGCCATTTTATGAATAATTCATATCCACACATAGAACCACC AGTAAGGTGGTGTGGCAGTCAAAAAAAAAGGAGAGGCAACCACACGCATTCATTTTCATATTGAC ACTCGTAGCGGCAGGCATTGAGTCCTCCAAATCCAGGCGCGGCACCCTCGGTGGCAGATCCTCGT CAACGATTTTGGCGACATCATTGTCTCCTGGTTGTGTGTCCTTTGTCTACGCCCAGCCTACACCC CGGCCCTTGTTTAGGTTGTCATTCTTAAAGCCTGGCCAGAAAAAATGCCAATGGAAGTCAAGAAA AAGGGACAAAACCACTGAAAACAAACTTTCAATCTAGAAAAGGCGTCTACAGAAAAAAAAAGGAA AATGGGACAAAGGCTCTAATCCAACTTGCAATATTTATATTGTTA Right flanking sequence: Indices 17615882 -- 17616381 AGTTAAAATAACCAAATAATAACCTGTATTTTTAAGTTACCCAGGAAAGGCTTTATTTATGCCAG CCGTGTGGTATCCTATTTTTTCGCCAGTGTTTTGGTCCTTCATCTTGTTTGGTCATCAGCGATGG CTTCATTAGACACTCTCACTCACTTACAATCACTTACAGTCATGCCACGTCCTCCACTTCGCCCA TATTGAAGTTGTTTCTTTTGTTTTGCACTTGCATATCCGTCCGGCATGGGCATCCTTTTTATCCT GCTTCTGCTCCTGCTCGCACCCCTGCTGTTTGCTTACTGCTTTTCCTCACTGCTTCGCCTTGGGC AAAAGTGATGCTAATCGGCAATTGGCCGCGGCGTCGTTATGTGGCTGCCGGTAACTGTTTTTGTT GCCACTATCGCTGGCCGTATCTTGCTGCCAAATTCGCTGATTCACGTAATTTGCCGCGACTGCAG CAGCGACAACGGCCAAAAGCCACGGCCAACAACCAAAGCCAAAGC Found at i:17616044 original size:10 final size:10 Alignment explanation
Indices: 17616031--17616053 Score: 39 Period size: 10 Copynumber: 2.3 Consensus size: 10 17616021 ACACTCTCAC 17616031 TCACTTACAA 1 TCACTTACAA * 17616041 TCACTTACAG 1 TCACTTACAA 17616051 TCA 1 TCA 17616054 TGCCACGTCC Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 10 12 1.00 ACGTcount: A:0.35, C:0.30, G:0.04, T:0.30 Consensus pattern (10 bp): TCACTTACAA Left flanking sequence: Indices 17615531 -- 17616030 ACACGCATTCATTTTCATATTGACACTCGTAGCGGCAGGCATTGAGTCCTCCAAATCCAGGCGCG GCACCCTCGGTGGCAGATCCTCGTCAACGATTTTGGCGACATCATTGTCTCCTGGTTGTGTGTCC TTTGTCTACGCCCAGCCTACACCCCGGCCCTTGTTTAGGTTGTCATTCTTAAAGCCTGGCCAGAA AAAATGCCAATGGAAGTCAAGAAAAAGGGACAAAACCACTGAAAACAAACTTTCAATCTAGAAAA GGCGTCTACAGAAAAAAAAAGGAAAATGGGACAAAGGCTCTAATCCAACTTGCAATATTTATATT GTTAATTAATTATTTATTCTTTATTAAGTTAAAATAACCAAATAATAACCTGTATTTTTAAGTTA CCCAGGAAAGGCTTTATTTATGCCAGCCGTGTGGTATCCTATTTTTTCGCCAGTGTTTTGGTCCT TCATCTTGTTTGGTCATCAGCGATGGCTTCATTAGACACTCTCAC Right flanking sequence: Indices 17616054 -- 17616553 TGCCACGTCCTCCACTTCGCCCATATTGAAGTTGTTTCTTTTGTTTTGCACTTGCATATCCGTCC GGCATGGGCATCCTTTTTATCCTGCTTCTGCTCCTGCTCGCACCCCTGCTGTTTGCTTACTGCTT TTCCTCACTGCTTCGCCTTGGGCAAAAGTGATGCTAATCGGCAATTGGCCGCGGCGTCGTTATGT GGCTGCCGGTAACTGTTTTTGTTGCCACTATCGCTGGCCGTATCTTGCTGCCAAATTCGCTGATT CACGTAATTTGCCGCGACTGCAGCAGCGACAACGGCCAAAAGCCACGGCCAACAACCAAAGCCAA AGCCGTAGCCAATGTGTTGTCTCTCCCGCCACTATACACTACAAAACCTAGCCGGAAAAGTGCAG GAAAAGTGGATTAGGCTTGTGCACGAAAGTTGTTTTTCCGCAGGTTTCTCCCATTAAGAGTATCA TACATTCGTTGCTATTTTCCAGCCATTTGCTGCCATTGTTTTGCA Found at i:17617590 original size:7 final size:7 Alignment explanation
Indices: 17617575--17617595 Score: 28 Period size: 7 Copynumber: 3.1 Consensus size: 7 17617565 GCAAGGGAGC * 17617575 CACCCCA 1 CACCACA 17617582 CACCACA 1 CACCACA 17617589 CA-CACA 1 CACCACA 17617595 C 1 C 17617596 TTTGTTCGCA Statistics Matches: 13, Mismatches: 1, Indels: 1 0.87 0.07 0.07 Matches are distributed among these distances: 6 5 0.38 7 8 0.62 ACGTcount: A:0.38, C:0.62, G:0.00, T:0.00 Consensus pattern (7 bp): CACCACA Left flanking sequence: Indices 17617075 -- 17617574 TTCAATGCAAATGTGTGTTGCAAACCGGAAAAACTCCGGGCGAAAACAAATGATTTATGGCATCA CGTGCTTTGGTCTTGTATTTGTTTTCAACAAAAATTACTGACCTATGGCCAAGTAATGGAAAAAC GAACCTTATGTTGTGATGTTAAGAAGTTGAAGCTGCCGAGATATGTTAAAACTAACAGTGAAAGA GCTGGGAGAACTCTTAAAATTACTAACAGCTAACTAACAGTTAAAAGAAAGAGAATCGTGGCTAA CAGAGCATGCTCTTTGGGAATTTTACTCTTTGGAAACAATGTTATCCCTCTTCATTTTTAAGGCT GTTAAGTCTGCACTGTTGGCGGTACAAGAGTGTTAGGCTAATGGCCAAAATGCAGCATAAATCAC AGAAGTCGAGGATGTCGACAGCAATGCGGTTGCATTGCGATGCCACCGCCTCCCACAAGCCACCA CCCACTGAAACTGCCCCAAATGTGCATTTAAACTAGCAAGGGAGC Right flanking sequence: Indices 17617596 -- 17618095 TTTGTTCGCACAACTGCAATGTCATTTCTATGCACAATGAATGCATAAATCATTAACAAGCGCTC TTCGCTCGCCGCAAAATAATAACAATAATGCTAAAAACTGCAACGAAACCGCTGCAGCCACAATG CCCATGTGGAGGCAACCCAATCAGCACTAAGCCACTTCCCCTTCCACTTCCACATCCGCATCATC GCCAAAAACAAAAAACACCGCCCCTTTGGAGGTTGCATGTGCAACCAATTACAGTCGTTTCCGGC AATCAGTTTTTAGCGCCTGAAATTTCGCATCCACGCGGGTCCTGCAAGCCGAGTATAGTTGTAAT CACTTTTGAAATTTCAAATTTCAATTCGATTCTCGCCGCAGCATCGATGCCGTCACGCCCCCGAG TTGAGCACTTAAAATTTATGTTGCCATCCATAGATCATGACGGAATGACACTTGGACAGGACCAG TTGTAGTTGTTGTCGTTGTCATATTTGTGCGTGTGTTTGTGGCGA Found at i:17617806 original size:7 final size:7 Alignment explanation
Indices: 17617794--17617807 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 17617784 CATCATCGCC 17617794 AAAAACA 1 AAAAACA 17617801 AAAAACA 1 AAAAACA 17617808 CCGCCCCTTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00 Consensus pattern (7 bp): AAAAACA Left flanking sequence: Indices 17617294 -- 17617793 AACAGCTAACTAACAGTTAAAAGAAAGAGAATCGTGGCTAACAGAGCATGCTCTTTGGGAATTTT ACTCTTTGGAAACAATGTTATCCCTCTTCATTTTTAAGGCTGTTAAGTCTGCACTGTTGGCGGTA CAAGAGTGTTAGGCTAATGGCCAAAATGCAGCATAAATCACAGAAGTCGAGGATGTCGACAGCAA TGCGGTTGCATTGCGATGCCACCGCCTCCCACAAGCCACCACCCACTGAAACTGCCCCAAATGTG CATTTAAACTAGCAAGGGAGCCACCCCACACCACACACACACTTTGTTCGCACAACTGCAATGTC ATTTCTATGCACAATGAATGCATAAATCATTAACAAGCGCTCTTCGCTCGCCGCAAAATAATAAC AATAATGCTAAAAACTGCAACGAAACCGCTGCAGCCACAATGCCCATGTGGAGGCAACCCAATCA GCACTAAGCCACTTCCCCTTCCACTTCCACATCCGCATCATCGCC Right flanking sequence: Indices 17617808 -- 17618307 CCGCCCCTTTGGAGGTTGCATGTGCAACCAATTACAGTCGTTTCCGGCAATCAGTTTTTAGCGCC TGAAATTTCGCATCCACGCGGGTCCTGCAAGCCGAGTATAGTTGTAATCACTTTTGAAATTTCAA ATTTCAATTCGATTCTCGCCGCAGCATCGATGCCGTCACGCCCCCGAGTTGAGCACTTAAAATTT ATGTTGCCATCCATAGATCATGACGGAATGACACTTGGACAGGACCAGTTGTAGTTGTTGTCGTT GTCATATTTGTGCGTGTGTTTGTGGCGAATCCTTTGGGGAATCGGATAGCCCGACATTTGGAACA GCGATAAAGGATTGACATTGGGATTGCTCGAAATATATGGCTCTGCTTTTTAAAACAACCATTTG GCTGCTCACGAAGTGGCTCAATAGCAGATATCAATTTACATTATGGCTCATATTACACAAAGGCT AAATTAGTAAACACAATTTAAAATTGTATTTATTGCTATATTGGC Found at i:17617941 original size:7 final size:7 Alignment explanation
Indices: 17617925--17617944 Score: 33 Period size: 7 Copynumber: 2.9 Consensus size: 7 17617915 TGTAATCACT * 17617925 TTTGAAA 1 TTTCAAA 17617932 TTTCAAA 1 TTTCAAA 17617939 TTTCAA 1 TTTCAA 17617945 TTCGATTCTC Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.40, C:0.10, G:0.05, T:0.45 Consensus pattern (7 bp): TTTCAAA Left flanking sequence: Indices 17617425 -- 17617924 AAGAGTGTTAGGCTAATGGCCAAAATGCAGCATAAATCACAGAAGTCGAGGATGTCGACAGCAAT GCGGTTGCATTGCGATGCCACCGCCTCCCACAAGCCACCACCCACTGAAACTGCCCCAAATGTGC ATTTAAACTAGCAAGGGAGCCACCCCACACCACACACACACTTTGTTCGCACAACTGCAATGTCA TTTCTATGCACAATGAATGCATAAATCATTAACAAGCGCTCTTCGCTCGCCGCAAAATAATAACA ATAATGCTAAAAACTGCAACGAAACCGCTGCAGCCACAATGCCCATGTGGAGGCAACCCAATCAG CACTAAGCCACTTCCCCTTCCACTTCCACATCCGCATCATCGCCAAAAACAAAAAACACCGCCCC TTTGGAGGTTGCATGTGCAACCAATTACAGTCGTTTCCGGCAATCAGTTTTTAGCGCCTGAAATT TCGCATCCACGCGGGTCCTGCAAGCCGAGTATAGTTGTAATCACT Right flanking sequence: Indices 17617945 -- 17618444 TTCGATTCTCGCCGCAGCATCGATGCCGTCACGCCCCCGAGTTGAGCACTTAAAATTTATGTTGC CATCCATAGATCATGACGGAATGACACTTGGACAGGACCAGTTGTAGTTGTTGTCGTTGTCATAT TTGTGCGTGTGTTTGTGGCGAATCCTTTGGGGAATCGGATAGCCCGACATTTGGAACAGCGATAA AGGATTGACATTGGGATTGCTCGAAATATATGGCTCTGCTTTTTAAAACAACCATTTGGCTGCTC ACGAAGTGGCTCAATAGCAGATATCAATTTACATTATGGCTCATATTACACAAAGGCTAAATTAG TAAACACAATTTAAAATTGTATTTATTGCTATATTGGCTAACCCGTTTTGCATTTATACGATTTT CATCTAATTAGGTTGATAGCCAAAAACTATGATAGTTACAATACAGTTCAATGAACTTTGTCGTA AATAAATATTTTCATATTCAAATAATTCAATTTACAGAATTTACA Found at i:17618068 original size:9 final size:9 Alignment explanation
Indices: 17618050--17618069 Score: 33 Period size: 9 Copynumber: 2.2 Consensus size: 9 17618040 GACAGGACCA 17618050 GTTGTAGTT 1 GTTGTAGTT * 17618059 GTTGTCGTT 1 GTTGTAGTT 17618068 GT 1 GT 17618070 CATATTTGTG Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.05, C:0.05, G:0.35, T:0.55 Consensus pattern (9 bp): GTTGTAGTT Left flanking sequence: Indices 17617550 -- 17618049 TGTGCATTTAAACTAGCAAGGGAGCCACCCCACACCACACACACACTTTGTTCGCACAACTGCAA TGTCATTTCTATGCACAATGAATGCATAAATCATTAACAAGCGCTCTTCGCTCGCCGCAAAATAA TAACAATAATGCTAAAAACTGCAACGAAACCGCTGCAGCCACAATGCCCATGTGGAGGCAACCCA ATCAGCACTAAGCCACTTCCCCTTCCACTTCCACATCCGCATCATCGCCAAAAACAAAAAACACC GCCCCTTTGGAGGTTGCATGTGCAACCAATTACAGTCGTTTCCGGCAATCAGTTTTTAGCGCCTG AAATTTCGCATCCACGCGGGTCCTGCAAGCCGAGTATAGTTGTAATCACTTTTGAAATTTCAAAT TTCAATTCGATTCTCGCCGCAGCATCGATGCCGTCACGCCCCCGAGTTGAGCACTTAAAATTTAT GTTGCCATCCATAGATCATGACGGAATGACACTTGGACAGGACCA Right flanking sequence: Indices 17618070 -- 17618569 CATATTTGTGCGTGTGTTTGTGGCGAATCCTTTGGGGAATCGGATAGCCCGACATTTGGAACAGC GATAAAGGATTGACATTGGGATTGCTCGAAATATATGGCTCTGCTTTTTAAAACAACCATTTGGC TGCTCACGAAGTGGCTCAATAGCAGATATCAATTTACATTATGGCTCATATTACACAAAGGCTAA ATTAGTAAACACAATTTAAAATTGTATTTATTGCTATATTGGCTAACCCGTTTTGCATTTATACG ATTTTCATCTAATTAGGTTGATAGCCAAAAACTATGATAGTTACAATACAGTTCAATGAACTTTG TCGTAAATAAATATTTTCATATTCAAATAATTCAATTTACAGAATTTACATTTTAATATTAAATT TATAAAAGTTGATCAAATTCGGATTGCATTTTTTCCGCATCAATATAAGTAAATATTTATATTGC GCTGCTGGCACAACCTCCACTTTAAGCTGAGCGATTCCAATTTAA Found at i:17619666 original size:7 final size:7 Alignment explanation
Indices: 17619654--17619668 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 17619644 TCATTTTACA 17619654 TGCACTT 1 TGCACTT 17619661 TGCACTT 1 TGCACTT 17619668 T 1 T 17619669 TTCCATGCAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.13, C:0.27, G:0.13, T:0.47 Consensus pattern (7 bp): TGCACTT Left flanking sequence: Indices 17619154 -- 17619653 TAAAAATATTTGGCATCTATAAATTGTATTCTATTGCTGAAAACCGTTTCCGTTGTTCAAAATGC GATCAATTTGTATTGTGCTATTTTCCGTCATACATTAATGAATATGAAAGAAAAATAAATTAACT TTTTAAAACGGATTGAGTGATTGACCTGAATTTGAAAATATAAGTACTTATTTAATTAAGTGAGT GTTTTGGGGCTTGAACGTTCTCTAGCTTAATTAAATGCCTGGAATGGTATGCTGTGTAAATTCTT GCAAGGATTGATCTGTATGACGTCAAAGAAAAATGATAACCAACAAGGGTTTTCCAAATTGATTA ATGGGGTCAGTTGAAAATTGCGCATGCAGTGCAACAAAATTGAAAAGGAGAAACGTCTAAGCCAG AAACCAATCACTTATCATTTGTTGCAGCTGCAAAAAGTGTTGAGCACTAATTGAATGTCATCAGG ACCATCGACAATGTCAATTTGAAATATTATTAAAATCATTTTACA Right flanking sequence: Indices 17619669 -- 17620168 TTCCATGCAAAATCTAGGGAGCTGCTGTCCAAGAAGCGTAGCAAAGGCTCTTAGCTGACTGGCAA AATGTGCGTAAACAGCATAAAGCTCGCCTTCCTCTCATTCTTTCTATTAAATTTCGTTTTTTTAT TCATTTTTTACACTTCTATTTCAAATATTTGCAGTAGAAGCAAAAATGTAAATGACACCAAGTAT ATTAAAACAGCGAAAAAGGAGTGTCAATAAAAAAAAAGACAGTTGCGATAAATGAAATCCGATTT ACTGACATTGAATTATCTCTCTTGAATTTATCTCATAAGTATGGCATCATCATAAGTTAAAGCTC AAACTTTAAGGAGAACGTGATTCTCTGGCTCTCAAAAATCCTGCAGACTCCTACAAAGTCAGCAT CATTTTTTTTTTTTTTTTGGCAGCAGCTTTGGCAGCCAGACACCAACAAAATGCGCCATTTGTGT TAACTATACTGACACTGAAACCGAAAGCCAAAAATGCTAAAACAA Found at i:17620267 original size:7 final size:7 Alignment explanation
Indices: 17620255--17620268 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 17620245 TTACTTTGGA 17620255 GGAAAAT 1 GGAAAAT 17620262 GGAAAAT 1 GGAAAAT 17620269 AAAAAGGGCA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.00, G:0.29, T:0.14 Consensus pattern (7 bp): GGAAAAT Left flanking sequence: Indices 17619755 -- 17620254 GCTCGCCTTCCTCTCATTCTTTCTATTAAATTTCGTTTTTTTATTCATTTTTTACACTTCTATTT CAAATATTTGCAGTAGAAGCAAAAATGTAAATGACACCAAGTATATTAAAACAGCGAAAAAGGAG TGTCAATAAAAAAAAAGACAGTTGCGATAAATGAAATCCGATTTACTGACATTGAATTATCTCTC TTGAATTTATCTCATAAGTATGGCATCATCATAAGTTAAAGCTCAAACTTTAAGGAGAACGTGAT TCTCTGGCTCTCAAAAATCCTGCAGACTCCTACAAAGTCAGCATCATTTTTTTTTTTTTTTTGGC AGCAGCTTTGGCAGCCAGACACCAACAAAATGCGCCATTTGTGTTAACTATACTGACACTGAAAC CGAAAGCCAAAAATGCTAAAACAAAAGAATGTAAGAGAGAAAGTCAACCGCCAACAAAGAAAAGC AACTCCAGAGACGCTTTACTTATAATGAAGTTCATTTACTTTGGA Right flanking sequence: Indices 17620269 -- 17620768 AAAAAGGGCACACACAAACGATTTAGTTTCATGTTCCGTTGGCTGGCGGAAGGAAAAGCTGCGAG CACCATATACTACTACTGGTGCAATGCCTTCGCGGCCTTTGCTGTTTGCTATTGTTTTAGCTGTT GTTGGTTGCAAGATTAATATGCTGCCGTTTTCCACTACTTATGCTGCCTTTCAGGACCAGGCCGG CACGTCCTGTCAGGACTCACACACGAAGTGGCGAACAGTGAAGGTTGGCGTTGTTCGGATCGACG ATACTTACAGAAATTGATATTCAATTTTCTGAAATGTTCAATAGCATATTTTTAACCAAAGTTAA TAGCTAATAGCTAATTGCATCGATTCGATTACAACCTTGTTTCGTAGAAAGTTTGCTTAACTTTA TCGCATCGTGCGTGCATCTATTTAGGATGAAGGTCACTATGCTGACCTCCGAAAATGCTGAACTT TTCGAGAACATTATAATTTTTGTTTAAAAATAAATTTGTTTTTTT Found at i:17620603 original size:7 final size:7 Alignment explanation
Indices: 17620591--17620608 Score: 36 Period size: 7 Copynumber: 2.6 Consensus size: 7 17620581 TAACCAAAGT 17620591 TAATAGC 1 TAATAGC 17620598 TAATAGC 1 TAATAGC 17620605 TAAT 1 TAAT 17620609 TGCATCGATT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.44, C:0.11, G:0.11, T:0.33 Consensus pattern (7 bp): TAATAGC Left flanking sequence: Indices 17620091 -- 17620590 CAGCCAGACACCAACAAAATGCGCCATTTGTGTTAACTATACTGACACTGAAACCGAAAGCCAAA AATGCTAAAACAAAAGAATGTAAGAGAGAAAGTCAACCGCCAACAAAGAAAAGCAACTCCAGAGA CGCTTTACTTATAATGAAGTTCATTTACTTTGGAGGAAAATGGAAAATAAAAAGGGCACACACAA ACGATTTAGTTTCATGTTCCGTTGGCTGGCGGAAGGAAAAGCTGCGAGCACCATATACTACTACT GGTGCAATGCCTTCGCGGCCTTTGCTGTTTGCTATTGTTTTAGCTGTTGTTGGTTGCAAGATTAA TATGCTGCCGTTTTCCACTACTTATGCTGCCTTTCAGGACCAGGCCGGCACGTCCTGTCAGGACT CACACACGAAGTGGCGAACAGTGAAGGTTGGCGTTGTTCGGATCGACGATACTTACAGAAATTGA TATTCAATTTTCTGAAATGTTCAATAGCATATTTTTAACCAAAGT Right flanking sequence: Indices 17620609 -- 17621108 TGCATCGATTCGATTACAACCTTGTTTCGTAGAAAGTTTGCTTAACTTTATCGCATCGTGCGTGC ATCTATTTAGGATGAAGGTCACTATGCTGACCTCCGAAAATGCTGAACTTTTCGAGAACATTATA ATTTTTGTTTAAAAATAAATTTGTTTTTTTTAAGAGTTTTTTAAATATATAAGTAATGTACGCTT AGTACATTTCTATGGACACACATATTTTTGATGCCACTGTAGCTGCGTATCCTTCGGCGACTGTG TGTGCTTCCTAGTTAAATGAGTATGCGTGTGCTGCTAGTGTGTATGTGTATGTGTGTGTGAGTGC ATACAATGCGTATGCTGAAAACTTAAGTCACGAAAGCAGACGCTCTGGCAAAGGCGATCCGTCAG GCTGCGAAATACTTTGGCAACGAAAATATTATACAACTACTACAAGGGTAGGGATTTATTGTGCT TTTTTCCCTTGAAATGCACCGCCCCTGCTACCTTTTAATGTCCTT Found at i:17621303 original size:6 final size:7 Alignment explanation
Indices: 17621287--17621303 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 17621277 AATGTGCAAA 17621287 GGGGGTG 1 GGGGGTG 17621294 GGGGGTG 1 GGGGGTG 17621301 GGG 1 GGG 17621304 TTCGAAGGTC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.00, C:0.00, G:0.88, T:0.12 Consensus pattern (7 bp): GGGGGTG Left flanking sequence: Indices 17620787 -- 17621286 ATAAGTAATGTACGCTTAGTACATTTCTATGGACACACATATTTTTGATGCCACTGTAGCTGCGT ATCCTTCGGCGACTGTGTGTGCTTCCTAGTTAAATGAGTATGCGTGTGCTGCTAGTGTGTATGTG TATGTGTGTGTGAGTGCATACAATGCGTATGCTGAAAACTTAAGTCACGAAAGCAGACGCTCTGG CAAAGGCGATCCGTCAGGCTGCGAAATACTTTGGCAACGAAAATATTATACAACTACTACAAGGG TAGGGATTTATTGTGCTTTTTTCCCTTGAAATGCACCGCCCCTGCTACCTTTTAATGTCCTTTCC CCTTGCCATCCGTTCACAGCAGACCTCTATCGCCCACTGTGTGCTCACCGAGATGCAATGAAGCC GAAATGCAGCACTCAACTTGAGCTCCTGTCGCTCCTTCAAAGATCCCTGCAACGAGGCGAAAATC TTAACTGGCAACTCCCCCGGCGAAAATGAGCAGGAAATGTGCAAA Right flanking sequence: Indices 17621304 -- 17621803 TTCGAAGGTCCTTCGGTGCCTCCTGCAATTTTCATTTGCATCTTCTGGCGCTGCCATAACTGCCG CCTGTACGCAGTTACACATCACACTTTAGTTCCGCCAAGTGGATTTTCCTCCGGCGCAGAGTTTG TCTTTTCATTAGTTTCGGGGTTTATTGTTATCTTTGGTGCCTGCCTAGAAACGAAATTCACTTGG CTGCAGATTTTGCAGATTAACCAAAAAATGAGCGGGATAATGAAGCCTGACCTTTCGGTGGTCTT TTGTCTTTTACATTAACTTTAATTTTACTTTAGATTTGGGCTTAAAGGGCTATTTTAAGCTATGA CTGCTTTGTTTGCTGAATTAAAATGAATAATACAATTCAAGATCTTGCAAGTGTGTTGGTTTATT ATTGTAATATTTACTAGGTATTATTTAACACATTTTTTATAGTCCTCGTCCTTGGTCGACTGCCT TCGTTGTGCCGCAAATTGGTTAGCATCCGCCGATGTGATTCCTTG Found at