TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_2L assembled 2004-4-6 md5checksum:29037f68a520aa000acffb8837e59820 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 22407834 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Warning! 100 characters in sequence are not A, C, G, or T Found at i: i:18334513 original size:9 final size:9 Alignment explanation
Indices: 18334499--18334516 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 18334489 CGATAAAAGA 18334499 AAACTACAG 1 AAACTACAG 18334508 AAACTACAG 1 AAACTACAG 18334517 GAGTGCTCTC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.56, C:0.22, G:0.11, T:0.11 Consensus pattern (9 bp): AAACTACAG Left flanking sequence: Indices 18333999 -- 18334498 GTGGAACCAAAATGCTTAGATAGTCACTTGACAATTTCCTGCAATTTAGCTGTTTGTTTTTGTAC CTCTTTTTTTTTAATTTTTCGTTTTCGTGTTTAGGTATCTCTTGCCTGAATGAAGTTTTGTGCAA AGCAACAGACACAAAAAAAAACGGAAAAAATAAAAACAATTAGGTTGTTGCGAAAACAGAAAGAG AACTCTGTTTTAGAGGGCAAGACCGGGGGTTTCGGGGATCCTCTACATGTGCTGTTGTTAAACTT TTTCTCAGTTTACTCGTTGTTCATGTTGTTTTCGCTTTGCTGTTGTAATTGCAACATAATTTGCT ATTACATGCTACTTTTTGTTGCTGCCTCAGTTTTGTGGGTCTCTGGGTCTCGCAGCTGTTGCGAA TTGCTCATAGAGAAAGAGAAAACCCGGCAAACGGGTAAGAAAAGACAATTACCAGCAATTAGAAA CGAATTGCTTAAGGAAAAATAAGAATAACTGCAAACGATAAAAGA Right flanking sequence: Indices 18334517 -- 18335016 GAGTGCTCTCTAAAGTTATTTTTGGAATTGCCGAAATAAAAAATGCAGCTAAACAACGTTTTAAA ATCAATCAATTTTTGAATATATAAGATTTCTTCTTTTTATATATACCAAAACAATTTATTTGAAA TTGAGAACAAATCTTTATATAAATACCAGCAGATAAAACACATACAAAAAATGGTATGATTTCAG GTCGAAAGATAAATCTACTGCTTAAAGCCCACAAAAAACGGAAGTTAAGTAGATTTAAAATTGAA AATATTGCGATTTCCGGCCAGAACCATTTGCACATCTGCCACCTCGCCATCCGGCAGATAATCCG TAATTAGTTGCATATTTAGTGGGCCACATATGCTGAACTTACATGGCCAGAAAAACCAGCCTCTG CATTTGTATCTTTTAGTCTCCAGAGGACCGCAGGCATGGATACGCTAACTATATATAGATAGTTG CTCGCTGTCGTAAATAAAAAATACCAGTTAAATGGCAATTCGTGT Found at i:18336468 original size:8 final size:8 Alignment explanation
Indices: 18336455--18336476 Score: 44 Period size: 8 Copynumber: 2.8 Consensus size: 8 18336445 GCACACGTAG 18336455 AGGGCTGC 1 AGGGCTGC 18336463 AGGGCTGC 1 AGGGCTGC 18336471 AGGGCT 1 AGGGCT 18336477 CCAACCCCCT Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 14 1.00 ACGTcount: A:0.14, C:0.23, G:0.50, T:0.14 Consensus pattern (8 bp): AGGGCTGC Left flanking sequence: Indices 18335955 -- 18336454 ATCAGTCACGACATAATCTGAAGTAAATTGTACAAAGGAATAATCAATGCAGGCGCAAAAATTGT CATATATATTGGCTTATTTAAGTTGATATTTATTTTGAAATTCGCAAATATTTACAGGTATTGGC TTGTTTATAGTTTGTTATAAAATATGCTTAAAAGACAGAACTGTTAAACTTTATTTGCGTTGAAG TGCTTAGCTCTGTTTTCCCTTTTTAAATACGCGGCACAACCGTATTATTAGGGTTAATTTGTGGG TTCTTTGGCCGACTTCACTGCGGCAGTTTTCCGCATACATATACCCGGTTGCCACGCGTCTTGCA TAACATATTATGGCTGCCTTGCCTGCGTGGATATAATTATGCCTATTTCCTATGTGCGCCACATT TCCATGAGAGCTGCACTGGTATATACATATGTATATGTTGATGCGTATATATTTTTTAATGCCAC TTAAAATACAAATTGCCTGGATCTCTGTCTGAATGGCACACGTAG Right flanking sequence: Indices 18336477 -- 18336976 CCAACCCCCTTGACCCTCATCCGCCAGATACTATACGCTATATGCGTAATTGTCTCAATTATTCA CCAAAATGAGCCGCCATGCAGCTGCATTTGTGTGTTTGCAACTGATTTCATATGCGCCTTGTCTG CAGAACTTGCTTGCCACCAAAACCACCCACCGCCGCCCAGCACCGCCGGCCCCTTAACCCTCGAC TGCCAACCCCCTTAACCCGTCTTATCCGAGCTGTTTGCATTTGGGGCAAGAGCGCGCGCGTTGCA AATTACATTTGTATGCGTTTTGTGCACGCATTGCAATCGCTTGCATATAAATTGCGCCGCAAATG CAAAGCCACAACAATTGTTGCCTCCGTACGTTGCAGCACCGCCGCCTCCCCACACCTCTCGATCC ACTAACCCATCATGAGACCCCCCCCAAGAGCCCCTGGATCACCCCTTTAGGCAGTCATTAATGCG CCCGCCATGATGATGACTATCTTATGCTTATGCATGTTGACTTCG Found at i:18337224 original size:7 final size:7 Alignment explanation
Indices: 18337212--18337230 Score: 31 Period size: 7 Copynumber: 2.7 Consensus size: 7 18337202 CGACTTGGAA 18337212 TGCTGTT 1 TGCTGTT 18337219 TGCTGTT 1 TGCTGTT * 18337226 GGCTG 1 TGCTG 18337231 AACGCTGATG Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.00, C:0.16, G:0.37, T:0.47 Consensus pattern (7 bp): TGCTGTT Left flanking sequence: Indices 18336712 -- 18337211 TTGGGGCAAGAGCGCGCGCGTTGCAAATTACATTTGTATGCGTTTTGTGCACGCATTGCAATCGC TTGCATATAAATTGCGCCGCAAATGCAAAGCCACAACAATTGTTGCCTCCGTACGTTGCAGCACC GCCGCCTCCCCACACCTCTCGATCCACTAACCCATCATGAGACCCCCCCCAAGAGCCCCTGGATC ACCCCTTTAGGCAGTCATTAATGCGCCCGCCATGATGATGACTATCTTATGCTTATGCATGTTGA CTTCGACTTCGGCACACTGAGCGAAATAAGTTTCATATATGAGACTTAAATCATTAGTACTAGCC GCAAAATTCACTATCGTCCCAACCGTATTCCCTCTTAATTAAAAACATTTAAAGCTGATTTTTTT AAGCCTCACTTGATACTATGCAAATACATTTCTCAGTGAGAAAGGAGCATGAGGCAGTTGCAATT CAGACGGCGCCTGCTCCACATTTGGCAGTTAAAACCGACTTGGAA Right flanking sequence: Indices 18337231 -- 18337730 AACGCTGATGACTTGATGTTGACTTCGGTCGATTTATTTGCTGAGCTGCGATTTACATGAAAATT TACCACACAAATTTAACCAACTCTGATCCACGCCCCCTTTGCCCCATTTGTGCGACCAACCCACT TGGCACTGCAATTAAATGTTTTTTCGTTGGTGGCCATATCGGCTAGCTAACTGGAAACTGGCCAA GAATGATTTCGACGTTGGCTAGCTTGAAATCTGTGTAATTAGTGCCTGCGCTTCATTTGATGTGG CTAACCCCCAAACTACTCGACCAGATCTGCGGTTTATTGCTGGTCTCAAGCTGATTTATTCGGAA GTTAGTGACTTTGGGTCGAATTTAAATAATATTAGCCAATATCCGGTCGTGAAATTGGAATGCCA ATTGTAAATGGGTAGTTGGTAAAGTGATGGGGTTAAGAGAAAATATGTACATTGTTGACTGATAG AAATAAAGTATTTTGTATGATATGGCACAATGCTAGGTAGTCAAG Found at i:18337345 original size:9 final size:9 Alignment explanation
Indices: 18337327--18337345 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 18337317 TCTGATCCAC * 18337327 GCCCCCTTT 1 GCCCCATTT 18337336 GCCCCATTT 1 GCCCCATTT 18337345 G 1 G 18337346 TGCGACCAAC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.05, C:0.47, G:0.16, T:0.32 Consensus pattern (9 bp): GCCCCATTT Left flanking sequence: Indices 18336827 -- 18337326 GTACGTTGCAGCACCGCCGCCTCCCCACACCTCTCGATCCACTAACCCATCATGAGACCCCCCCC AAGAGCCCCTGGATCACCCCTTTAGGCAGTCATTAATGCGCCCGCCATGATGATGACTATCTTAT GCTTATGCATGTTGACTTCGACTTCGGCACACTGAGCGAAATAAGTTTCATATATGAGACTTAAA TCATTAGTACTAGCCGCAAAATTCACTATCGTCCCAACCGTATTCCCTCTTAATTAAAAACATTT AAAGCTGATTTTTTTAAGCCTCACTTGATACTATGCAAATACATTTCTCAGTGAGAAAGGAGCAT GAGGCAGTTGCAATTCAGACGGCGCCTGCTCCACATTTGGCAGTTAAAACCGACTTGGAATGCTG TTTGCTGTTGGCTGAACGCTGATGACTTGATGTTGACTTCGGTCGATTTATTTGCTGAGCTGCGA TTTACATGAAAATTTACCACACAAATTTAACCAACTCTGATCCAC Right flanking sequence: Indices 18337346 -- 18337845 TGCGACCAACCCACTTGGCACTGCAATTAAATGTTTTTTCGTTGGTGGCCATATCGGCTAGCTAA CTGGAAACTGGCCAAGAATGATTTCGACGTTGGCTAGCTTGAAATCTGTGTAATTAGTGCCTGCG CTTCATTTGATGTGGCTAACCCCCAAACTACTCGACCAGATCTGCGGTTTATTGCTGGTCTCAAG CTGATTTATTCGGAAGTTAGTGACTTTGGGTCGAATTTAAATAATATTAGCCAATATCCGGTCGT GAAATTGGAATGCCAATTGTAAATGGGTAGTTGGTAAAGTGATGGGGTTAAGAGAAAATATGTAC ATTGTTGACTGATAGAAATAAAGTATTTTGTATGATATGGCACAATGCTAGGTAGTCAAGAACAT ATGTACCATTAAATTGGAATTGCCATTAAAATTCTGCAACTTTTTTTCCGTGAAATATTTCACAT ATGCTTTGAGCAGAAAATAGTTCAAGTCCATCAACGTGTCTTTCT Found at i:18338685 original size:7 final size:7 Alignment explanation
Indices: 18338673--18338686 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 18338663 CGAACCGCAG 18338673 TTGGCCA 1 TTGGCCA 18338680 TTGGCCA 1 TTGGCCA 18338687 CAAAGGCAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.29, G:0.29, T:0.29 Consensus pattern (7 bp): TTGGCCA Left flanking sequence: Indices 18338173 -- 18338672 TTCTAGCGTCTCACTGCGAGAAAAGCAACGACACTTGCACTTCACTTAGCCGCACTTCGGTCTCA CCATTTTTGCCACACTCAAAGTGCAACGCACCGAATTTAACTGGAAAATGCTGTCAACTGAAAAT GGAAAGCTAACATCTATTATGCAGGCGACTGCGACTCTGGTCTGTCCAGTTTTCCACTCTTGGAC TCTCGAACCGAGGCAATTAATTTACGAGCTCAGTGAACATGGGCTTAGCTTTCACATCACTCGGG GCAAATAGATAAGAGCCTGGCCAAAAAGTCGGTCTAATCCATGGCCTGGCCTACACTTGGATCTC GCGTCAGCTTTATGGCATTTAGCTGTTGCTTTTTATGATATTGCCACTGCTGGATATTTGCTGGC AACTCGGCCACTCCGGCTGTAAGTGGCTCTAATCCTGTCCAGCAGTTTGGCAGCAGTGACCCCGG CAGAGCTGCCGTTTCAAAGTGAAAGGGTTTTGGCCCGAACCGCAG Right flanking sequence: Indices 18338687 -- 18339186 CAAAGGCAAACAAAACATTCGAAACGAAACAAAACGCCTGGATGTGTTGCCATTTTCGGGGTCAC TTTGCAATCGTTTGTTTGTTTTCCCCCTAACACTGCAGTGCTCCCCCCTCCGACCAACATCCATA GCATTTTCCGTGGCCTAGTGTTTAGCTCAATGCTCGGCTCAAAGCTAACTAATCTTCTGACATTT TTGGGACAGCATGCACAATACGAGTATCAAATGCATACACAATTATTTGGGACCACAGGAATGAC ACGTTCCCATTGGCTGTTACTCTGAATATAAATAGTATTATAAATATTTTCTAAATTTATATTTT ACTTCGTTTTTATATTAAACGTCTAATCCTATCTTACCAATTACCTTTTTCCACTTAAAGGGAAT TTACATTGCATGCCACCCCTGAAACGAACCTCTGATTCAAGCCCCTCCGACTGACGTTTGCCATT CACTCAACTCTACCATGCTGTGATCATGATGACAAAAACTCTTTT i:18339444 original size:7 final size:7 Alignment explanation
Indices: 18339432--18339449 Score: 36 Period size: 7 Copynumber: 2.6 Consensus size: 7 18339422 ATTATTCTTT 18339432 TTTTGTG 1 TTTTGTG 18339439 TTTTGTG 1 TTTTGTG 18339446 TTTT 1 TTTT 18339450 TGGCCTCTGC Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.00, C:0.00, G:0.22, T:0.78 Consensus pattern (7 bp): TTTTGTG Left flanking sequence: Indices 18338932 -- 18339431 GACCACAGGAATGACACGTTCCCATTGGCTGTTACTCTGAATATAAATAGTATTATAAATATTTT CTAAATTTATATTTTACTTCGTTTTTATATTAAACGTCTAATCCTATCTTACCAATTACCTTTTT CCACTTAAAGGGAATTTACATTGCATGCCACCCCTGAAACGAACCTCTGATTCAAGCCCCTCCGA CTGACGTTTGCCATTCACTCAACTCTACCATGCTGTGATCATGATGACAAAAACTCTTTTGATTT CCTACCAACTTTTACAACGGAACTCACTCGTACACCGATTTTACTCAGGTTTTTTCCCGCCCCGC CCCCTTTCCGCCTTAGCAAGTGCTGGGTTTGGGGTGTGGCATCAGGTGGAAATGGCAGCCTTTGT TTTTCCATTTGGACATGCAATGCCGCACTTTTTTGTCTCCTTCACTCTGGCAACACTTTTCGGTG TTGCTTTCAATTCTGTTTGTTTTGTTGTCGTTTTTATTATTCTTT Right flanking sequence: Indices 18339450 -- 18339949 TGGCCTCTGCAGTTTCCTTTTTTGGCATCAGTAGTTGTAGTCGAGTTTGCCATTTCCGTGGCGCT CATGCGTATAATTTTGCTTGAGGCTGTCGCCGAGTACGAAACTATGGGGCCACCACCCCCGAAAA CCCCCACTTTTTACATTACCTCTCCTTACTCCACTGTATCAGTTGGAAAAAGTCGAATGTCTGAA GTGAAGCCAAAAACTGGAGGCCACCGTGACGTATGCGCAATGTGACAAAACAACAGCAACAACCA CCACAACTGAGAAGGAAAATGCCAAAAAATATTGAACCTAAATTGCAAAATGTAAAGCATTCCAG ATGGTGTGGGGCCTTTTACTTTGCTTTTAATTTTCAAGCAAAAATCAAAGTTCGTTTCGGTCTGT TTTTTCTGCTTACATTTTGCAGAGGAATATCAGGAATTTCTTCACCGATTTAAACCTTAAATTGT GGTCTTACATTGACAATTGTCACATGGCTGGGCACAGCATCGAAA Found at i:18339450 original size:8 final size:8 Alignment explanation
Indices: 18339431--18339451 Score: 35 Period size: 7 Copynumber: 2.8 Consensus size: 8 18339421 TATTATTCTT 18339431 TTTTTGTG 1 TTTTTGTG 18339439 -TTTTGTG 1 TTTTTGTG 18339446 TTTTTG 1 TTTTTG 18339452 GCCTCTGCAG Statistics Matches: 12, Mismatches: 0, Indels: 2 0.86 0.00 0.14 Matches are distributed among these distances: 7 7 0.58 8 5 0.42 ACGTcount: A:0.00, C:0.00, G:0.24, T:0.76 Consensus pattern (8 bp): TTTTTGTG Left flanking sequence: Indices 18338931 -- 18339430 GGACCACAGGAATGACACGTTCCCATTGGCTGTTACTCTGAATATAAATAGTATTATAAATATTT TCTAAATTTATATTTTACTTCGTTTTTATATTAAACGTCTAATCCTATCTTACCAATTACCTTTT TCCACTTAAAGGGAATTTACATTGCATGCCACCCCTGAAACGAACCTCTGATTCAAGCCCCTCCG ACTGACGTTTGCCATTCACTCAACTCTACCATGCTGTGATCATGATGACAAAAACTCTTTTGATT TCCTACCAACTTTTACAACGGAACTCACTCGTACACCGATTTTACTCAGGTTTTTTCCCGCCCCG CCCCCTTTCCGCCTTAGCAAGTGCTGGGTTTGGGGTGTGGCATCAGGTGGAAATGGCAGCCTTTG TTTTTCCATTTGGACATGCAATGCCGCACTTTTTTGTCTCCTTCACTCTGGCAACACTTTTCGGT GTTGCTTTCAATTCTGTTTGTTTTGTTGTCGTTTTTATTATTCTT Right flanking sequence: Indices 18339452 -- 18339951 GCCTCTGCAGTTTCCTTTTTTGGCATCAGTAGTTGTAGTCGAGTTTGCCATTTCCGTGGCGCTCA TGCGTATAATTTTGCTTGAGGCTGTCGCCGAGTACGAAACTATGGGGCCACCACCCCCGAAAACC CCCACTTTTTACATTACCTCTCCTTACTCCACTGTATCAGTTGGAAAAAGTCGAATGTCTGAAGT GAAGCCAAAAACTGGAGGCCACCGTGACGTATGCGCAATGTGACAAAACAACAGCAACAACCACC ACAACTGAGAAGGAAAATGCCAAAAAATATTGAACCTAAATTGCAAAATGTAAAGCATTCCAGAT GGTGTGGGGCCTTTTACTTTGCTTTTAATTTTCAAGCAAAAATCAAAGTTCGTTTCGGTCTGTTT TTTCTGCTTACATTTTGCAGAGGAATATCAGGAATTTCTTCACCGATTTAAACCTTAAATTGTGG TCTTACATTGACAATTGTCACATGGCTGGGCACAGCATCGAAACT Found at i:18340322 original size:8 final size:7 Alignment explanation
Indices: 18340304--18340322 Score: 29 Period size: 8 Copynumber: 2.6 Consensus size: 7 18340294 CTTCCCCTTT 18340304 TGCAACA 1 TGCAACA 18340311 TGCAATCA 1 TGCAA-CA 18340319 TGCA 1 TGCA 18340323 CCACCTGCTG Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 7 5 0.45 8 6 0.55 ACGTcount: A:0.37, C:0.26, G:0.16, T:0.21 Consensus pattern (7 bp): TGCAACA Left flanking sequence: Indices 18339804 -- 18340303 ATTTTCAAGCAAAAATCAAAGTTCGTTTCGGTCTGTTTTTTCTGCTTACATTTTGCAGAGGAATA TCAGGAATTTCTTCACCGATTTAAACCTTAAATTGTGGTCTTACATTGACAATTGTCACATGGCT GGGCACAGCATCGAAACTGGTAAGAGTGTGGGAGTTTTCCAGAAAAGCCGGGCGGCTTTCCACGC TTCAATGCCCCCATTTCACAGGCTCCATTCTCGTTCGTGAGTGGACAATGGCTGTGTTAAAGAAT CCGTTTTCCACTTTTTTCTGGACTTTTTCGCCGGTCTTTTGTTAGGGCAACAACGTGTTAATGCT GCTGCACAAAAATGTGCATTGGAAAACCTTTAAATATTTTTCCCTTGCATTTTAAACTTGTTTCT TTTTTTGTTTGTATTTGCTTTGCGTTGATGTTGAAGTTTATTTATCTAAGTTTAAGATCAACACG AAGGCAACCCCTTGAGAAAGTCCAACGCGGGTTTCCTTCCCCTTT Right flanking sequence: Indices 18340323 -- 18340822 CCACCTGCTGCTGCTGCTGCTGAAGTTGCTGGTGCTTGTGTTGGTGTTGCATGCACGACAGCAAT GCCAAAAACACGTAGAAAAAAATTGGGGTCACTTCCCTATAGTGGGATCAATAATGAGATAAATA GTGCTGCAGGATTAAGGATTAGGTCCTATTTTCCAAACTTTAAGAATTAGAACTCTATATATAAC TTATGTTTCGTCACTCGCGGTTATTTTCTGATTACAAATCACAGCATTGTTTGCCGTGCATCTGC AACAACAACATGTGGGAGTCCCTTCAGCGCCATCATCGTCGTCATCATAAATGGCCGGTGCACAA AGCTCACGTTCTCCTCGTTACGCGGGTCTGCTTTTGCCTTCTCAGTTTTCCTTGGTTTTTCTTTC ATTTCGTATTTTTTTTTTTTTGTGGTTTTTCCAAGCTTGGTTTTCCCTTTACTAGTGGTCCCATA TGCCTCAAAGTCGTTGCTTCTGGTTAAAGGTTTTTAGCACGGAGC Found at i:18340472 original size:7 final size:7 Alignment explanation
Indices: 18340460--18340473 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 18340450 ATAGTGCTGC 18340460 AGGATTA 1 AGGATTA 18340467 AGGATTA 1 AGGATTA 18340474 GGTCCTATTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29 Consensus pattern (7 bp): AGGATTA Left flanking sequence: Indices 18339960 -- 18340459 TGTGGGAGTTTTCCAGAAAAGCCGGGCGGCTTTCCACGCTTCAATGCCCCCATTTCACAGGCTCC ATTCTCGTTCGTGAGTGGACAATGGCTGTGTTAAAGAATCCGTTTTCCACTTTTTTCTGGACTTT TTCGCCGGTCTTTTGTTAGGGCAACAACGTGTTAATGCTGCTGCACAAAAATGTGCATTGGAAAA CCTTTAAATATTTTTCCCTTGCATTTTAAACTTGTTTCTTTTTTTGTTTGTATTTGCTTTGCGTT GATGTTGAAGTTTATTTATCTAAGTTTAAGATCAACACGAAGGCAACCCCTTGAGAAAGTCCAAC GCGGGTTTCCTTCCCCTTTTGCAACATGCAATCATGCACCACCTGCTGCTGCTGCTGCTGAAGTT GCTGGTGCTTGTGTTGGTGTTGCATGCACGACAGCAATGCCAAAAACACGTAGAAAAAAATTGGG GTCACTTCCCTATAGTGGGATCAATAATGAGATAAATAGTGCTGC Right flanking sequence: Indices 18340474 -- 18340973 GGTCCTATTTTCCAAACTTTAAGAATTAGAACTCTATATATAACTTATGTTTCGTCACTCGCGGT TATTTTCTGATTACAAATCACAGCATTGTTTGCCGTGCATCTGCAACAACAACATGTGGGAGTCC CTTCAGCGCCATCATCGTCGTCATCATAAATGGCCGGTGCACAAAGCTCACGTTCTCCTCGTTAC GCGGGTCTGCTTTTGCCTTCTCAGTTTTCCTTGGTTTTTCTTTCATTTCGTATTTTTTTTTTTTT GTGGTTTTTCCAAGCTTGGTTTTCCCTTTACTAGTGGTCCCATATGCCTCAAAGTCGTTGCTTCT GGTTAAAGGTTTTTAGCACGGAGCCACTCTCCGCACTTTTGCGGCCTGGAATTGCCTGTCAGGCA GTCAACCGTTCTACCTCTTTCTACCTCAGTCTCTCAAATATTGCCGCCTCTTTCTATGCAATGCC ACCCCTCTCTTTCTACTTCACACTAAGCGTTGGGGCATTAGGCAA Found at i:18342938 original size:7 final size:7 Alignment explanation
Indices: 18342926--18342940 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 18342916 CCCTTTTGTA 18342926 GCTTCTG 1 GCTTCTG 18342933 GCTTCTG 1 GCTTCTG 18342940 G 1 G 18342941 TTTTTCGCCA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.00, C:0.27, G:0.33, T:0.40 Consensus pattern (7 bp): GCTTCTG Left flanking sequence: Indices 18342426 -- 18342925 GTTTGAAGGATAGCCAAAATTAAATATTTAGAATATACCCAGCAAATAAGTTTAACTCTTTTTAT GGAAAACTCTTTACTTTCTTTTATCTGATACTAAGAAGATACATTACAAATGAAAAAGAACAACA AATATATCAAAATTAATTAATATCTGGCATAACAAAATGTACATAAAATGTTTCATTTTTCCTCC CATGAAAATGGAAAACTTTTCGCCTCACAAAATAAAACAACAAGCTTTGGCAACAGTCGAAGCCA AAGTTCAACTGCCAATCTCGAAACCCGCGCACTCAATGCACAAAAAATAGAAAAATAAACCAGAA CAAAAAACGGGGGAGTTTGCTGCAAAAAAATTTGTTTGAATGGGTGGCTAAAATTTGTCATCGCT ACAGGAAGCCGGAAACTAGCAACAGTTGTTGTATCTGCTGCTGCCAAAGAACTTTTGTTTGTTTT TGCAAGTAAACCCCCAGAACCAACACACCACCGGCCCCTTTTGTA Right flanking sequence: Indices 18342941 -- 18343440 TTTTTCGCCATTTTTTATATTTTCCCTGCCTGCAATCATTGCAGGTTCAATGTACCTGAAATACA GATGAGAGCAGCCAGAACATGCATAATGTATGTAAATTATGGCATAACAAACATCAGCGCGAAGC TAAAAACTGTGCGGCGGATTGGGTGGAAAATGCAGGAGAACGCAAAGTGCGAAAGTTACCATATT AACCACCTGTGGCTGCTTTTTCGCCCTTTCTTGGCAAAATGATAGCATAGAAAAAATAAACGGAG GAAAACAATAACAAGCTGCGTTTATTATGTGTCTGCTGTCGCTGTTGTTGCTCTTGTCTCAAGCG AGCTGTCCAATGGGGCGTATGTGTGATGCACACAATATTAAGTAAATAAATGTTCTCGGAGGAGC CTGCGGCGCCTTTGCATAGAAAAATAACTTGCTTTGACATGAGAAGTTTCTTTTGTTTTTGCTCC TAGTCGCGGGGGATAGCTAGCTTCTCCATCTGTATTTCGCTGCGA Found at i:18343614 original size:7 final size:7 Alignment explanation
Indices: 18343602--18343615 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 18343592 TTAATTATAC 18343602 AAAAACA 1 AAAAACA 18343609 AAAAACA 1 AAAAACA 18343616 CCTTGTCACA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00 Consensus pattern (7 bp): AAAAACA Left flanking sequence: Indices 18343102 -- 18343601 GCAGGAGAACGCAAAGTGCGAAAGTTACCATATTAACCACCTGTGGCTGCTTTTTCGCCCTTTCT TGGCAAAATGATAGCATAGAAAAAATAAACGGAGGAAAACAATAACAAGCTGCGTTTATTATGTG TCTGCTGTCGCTGTTGTTGCTCTTGTCTCAAGCGAGCTGTCCAATGGGGCGTATGTGTGATGCAC ACAATATTAAGTAAATAAATGTTCTCGGAGGAGCCTGCGGCGCCTTTGCATAGAAAAATAACTTG CTTTGACATGAGAAGTTTCTTTTGTTTTTGCTCCTAGTCGCGGGGGATAGCTAGCTTCTCCATCT GTATTTCGCTGCGAGGGAATGGGTTTTCGACATAAAATGAATAACACACGAGCTAGGGATATTAC TTTCAGTGTAGTGACAGCGCATGACGGAGCATTATAAGGGAGATTCTACTTAATGATTTAACAAT ACAGCAATATTAGATTGTTTTCTATTTAACACATATTAATTATAC Right flanking sequence: Indices 18343616 -- 18344115 CCTTGTCACAGTATCAAAATTTTTAACTCGAATTTCTTTTCGTTACAGGTATGTATTTCCTCCAT CAGCTTGAGATGAGTGAAAAGCTTCCTTTCAATTAAATTAAAAGTCAGGTAATCTCCACTTATAA CTCAAACAACTTGCTCGACTGCAACTTAAACTCCAACAAAGAGCAGGTGAGACAAAATGGAATGG AAGCGTGAAAGCTGCGGAAGCAGAAATCAAAAATGCAAACGAAGAAAAGTCGCGAAAAAGGCAGA ATCGCAAGTAGTAGCACTTTGCTGGTGGGTAGCGTAAAAGTGAAAAGCGAAAAACAAAGTAAAAT CTTTGCGCCAACAATTAAAGCGGCGAGCAAAGGAAAGGTGCGGGCCAAAGAGGGAAAATTCGAGG GGATTCCCACTCAGCTACAGGCCATTTCTGGACAATTGGGTCAACAGGGGCCATCAGCAGCGCCA CCTAGCGGCGTTAAGCGAATTACAAGCAAAACAAAGAGAAGTGCC Found at i:18343927 original size:7 final size:7 Alignment explanation
Indices: 18343906--18343928 Score: 30 Period size: 7 Copynumber: 3.1 Consensus size: 7 18343896 GCTGGTGGGT 18343906 AGCGTAAA 1 AGCG-AAA * 18343914 AGTGAAA 1 AGCGAAA 18343921 AGCGAAA 1 AGCGAAA 18343928 A 1 A 18343929 ACAAAGTAAA Statistics Matches: 13, Mismatches: 2, Indels: 1 0.81 0.12 0.06 Matches are distributed among these distances: 7 10 0.77 8 3 0.23 ACGTcount: A:0.57, C:0.09, G:0.26, T:0.09 Consensus pattern (7 bp): AGCGAAA Left flanking sequence: Indices 18343406 -- 18343905 GGATAGCTAGCTTCTCCATCTGTATTTCGCTGCGAGGGAATGGGTTTTCGACATAAAATGAATAA CACACGAGCTAGGGATATTACTTTCAGTGTAGTGACAGCGCATGACGGAGCATTATAAGGGAGAT TCTACTTAATGATTTAACAATACAGCAATATTAGATTGTTTTCTATTTAACACATATTAATTATA CAAAAACAAAAAACACCTTGTCACAGTATCAAAATTTTTAACTCGAATTTCTTTTCGTTACAGGT ATGTATTTCCTCCATCAGCTTGAGATGAGTGAAAAGCTTCCTTTCAATTAAATTAAAAGTCAGGT AATCTCCACTTATAACTCAAACAACTTGCTCGACTGCAACTTAAACTCCAACAAAGAGCAGGTGA GACAAAATGGAATGGAAGCGTGAAAGCTGCGGAAGCAGAAATCAAAAATGCAAACGAAGAAAAGT CGCGAAAAAGGCAGAATCGCAAGTAGTAGCACTTTGCTGGTGGGT Right flanking sequence: Indices 18343929 -- 18344428 ACAAAGTAAAATCTTTGCGCCAACAATTAAAGCGGCGAGCAAAGGAAAGGTGCGGGCCAAAGAGG GAAAATTCGAGGGGATTCCCACTCAGCTACAGGCCATTTCTGGACAATTGGGTCAACAGGGGCCA TCAGCAGCGCCACCTAGCGGCGTTAAGCGAATTACAAGCAAAACAAAGAGAAGTGCCAGAGCCAA AGTGGCATAAAAATAAAAAAACCATTCTCAAACGCCGGGGATTGCATACAAAGTGCAGTCTCCGA CTATGGATTGCCCTCACCACCCCTCCTCAACCCATCGACAATTTTCCGTGCTCTTCTTTCCACCT CTGTCTAGTGTTTGCAATTAAAATGAGGCCAAGAATGGGAGCCATAAAAATGGCAACCAGAAAGT AAGTTTTCAGGTCTGCGCGACCAAATGAAATTCAAGAAAAAAGTATCTAGCTATAGCTTTGCCCC TCTCTTTCTTCACATGTGGTTCTGTCTCTTTCTTCGGTCATGCTT Found at i:18344513 original size:7 final size:7 Alignment explanation
Indices: 18344501--18344519 Score: 31 Period size: 7 Copynumber: 2.9 Consensus size: 7 18344491 TCTTCACCAG 18344501 CTCCGAA 1 CTCCGAA 18344508 CTCCGAA 1 CTCCGAA 18344515 -TCCGA 1 CTCCGA 18344520 TTCCTCCAAA Statistics Matches: 12, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 6 5 0.42 7 7 0.58 ACGTcount: A:0.26, C:0.42, G:0.16, T:0.16 Consensus pattern (7 bp): CTCCGAA Left flanking sequence: Indices 18344001 -- 18344500 CGAGGGGATTCCCACTCAGCTACAGGCCATTTCTGGACAATTGGGTCAACAGGGGCCATCAGCAG CGCCACCTAGCGGCGTTAAGCGAATTACAAGCAAAACAAAGAGAAGTGCCAGAGCCAAAGTGGCA TAAAAATAAAAAAACCATTCTCAAACGCCGGGGATTGCATACAAAGTGCAGTCTCCGACTATGGA TTGCCCTCACCACCCCTCCTCAACCCATCGACAATTTTCCGTGCTCTTCTTTCCACCTCTGTCTA GTGTTTGCAATTAAAATGAGGCCAAGAATGGGAGCCATAAAAATGGCAACCAGAAAGTAAGTTTT CAGGTCTGCGCGACCAAATGAAATTCAAGAAAAAAGTATCTAGCTATAGCTTTGCCCCTCTCTTT CTTCACATGTGGTTCTGTCTCTTTCTTCGGTCATGCTTGACCGTAAAAGTAGCGTTCCTGACCCA GAAACGTGCCAACTGGTCCAACACGCATTCTCGGCTCTTCACCAG Right flanking sequence: Indices 18344520 -- 18345019 TTCCTCCAAACTCAAAAGCCAGCGACGCTGACTATGATTGCGGCAATGATGACGGTGATGGCTTT CACATTCCAGCGGCTCCGCTGCTCTTTACTTGACCAAGCTGACTTCCATTCGCTGACAGAATTTA TTCTCGCCTGAGCAAGTTTTCACTAAGAAAAATGGGATAGAATCTGAAAATGATTTCATAATAAC TGAAACATTCCATAAGCATTGAAAAAATGTTAAGTGAGTCCTTTTCAATAGTCTGCATCTTATTG AGCAAGAAAAGAAAAAAATACAGAAATTGAGTCAAAAACCAATTCAGAATATCTAAATTTGTAAA AGTGCATACACTGTTCTAGCCTGTGCCGAGCCTTCATAGGCACTCAGGCCACTTTCCCGACAGCC ATCCACTTGTTTCAGCCAACCTCCAAGCACTCTTGGCCACCAAATACAACCCACACACAATTGCA GTTTATTGGATTCCAGTGCGAGTTATCCGACTGTCGCCTGTCGGC Found at i:18348381 original size:6 final size:7 Alignment explanation
Indices: 18348364--18348381 Score: 29 Period size: 6 Copynumber: 2.7 Consensus size: 7 18348354 CTCTTTTCCA 18348364 TTCATCT 1 TTCATCT 18348371 TTCAT-T 1 TTCATCT 18348377 TTCAT 1 TTCAT 18348382 GCACTTGGCA Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 6 6 0.55 7 5 0.45 ACGTcount: A:0.17, C:0.22, G:0.00, T:0.61 Consensus pattern (7 bp): TTCATCT Left flanking sequence: Indices 18347864 -- 18348363 TTGCCTGCAATCAGCTACTCGAAATCTAGAATCGTTGGTTCTGTTTTCTTGTGTTCAACCGTTTT TTCCCTGATTTTCAAGTGGACAGCTTTGCATAACTGAAGCCGCATAAATTCAAATGAAGTACTCC AGCTGGAGGCACAGCATATGTCGAAAGATTTCTAAGAGATTCCTAACAATAGTTGGCCTATACAA TAGTTTTTTTTTCTTGTGCTGCCTACCTATTGCCTTTGTCATTCAAACATTCCCTCCTTATCCGC TGATCTTTCTATCTGTGGTCTGAGAGACATGAATTTCTTGTTAGACTGCTGCAGGAGTTTTGAAA TTTTTTTTATAATTTTTTTATCGATGCTGGTCGAATTCTACAGCACTTCTGATGGCTAGTGTTGG CCGAGAGTCAATAATTCTTCAAAAGCAATCGTCGCTGCCTTTGGGCACCCACATCCACCAACACG CTCGATTAAAGCTGAAAATATATCTACTGCTCGCCCTCTTTTCCA Right flanking sequence: Indices 18348382 -- 18348881 GCACTTGGCATTTCTGTTTTCCTCCTTCATCGCCCTGCTTTGTTTGCTTCCCATTCCCAATGCTC GCCCCATACCCCTTTTTTTTTGCTACCGACCGCATTCAAATGCTCTTTCAATGCCAAAGCTGCCT CCTTTGCATTCCGGCAACTTTCGAATGCCTGCAGTCAGACTTGTCGGCTTAGGCCGCACTCTTTT AGCCAACTCTCCCTGATTTGCACCCCCTAGCCACGCCCCTAATCCAACAGCCCAGCCCGCAGCCC TCTTCTGCAGCCCTTCTCGATTCGGTTCTGGCCCACTCCAATTCATTCCACTCCATTCCTCACAA TGGCCACATACACGCTCTTCATTTCGAATGCTTTTCCTGGCTTCTTATGTGCACGCCCTTCTTCT TACACTAATAAAAAAGCCATTAAAAAACTTTAACTATCTGGCACGTTACATGTAATAAAATATAA TAACATTAGCATAATACATATGTATATACAGAAAGTTCATGCTAA Found at i:18350563 original size:9 final size:9 Alignment explanation
Indices: 18350546--18350563 Score: 29 Period size: 9 Copynumber: 2.0 Consensus size: 9 18350536 AAATTACAGC 18350546 AAATAAATG 1 AAATAAATG * 18350555 AAATTAATG 1 AAATAAATG 18350564 CGACTTTTAT Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 9 8 1.00 ACGTcount: A:0.61, C:0.00, G:0.11, T:0.28 Consensus pattern (9 bp): AAATAAATG Left flanking sequence: Indices 18350046 -- 18350545 TTTATAAAATACCTATAGATGCATTGTACTCAACTTTCTTTAATGTAACTAGCCACACTAATGAA GTGAAATTATTAGCTTACCAGCACTGTTGAGCATCATTCAATAAAGTTGGATCGATTAAATTCGA GTTTTAATTAAATCCAGCTTCAGCTGCAGGATCCCATAATTAAGAAGTGACTAGTAAAAAAATAC ATAATAAAGAAGTGGAGTACTGGAAATGAAACACTAATCGAGAATGAACTCTGGGCGAGAGAATC GATGGACCAGTCATTCGTTTATTGGTGACTTTTTAGTTACGGAAATTGATTGACATAATAAAATA ATCCTTGAGTGTTAATTGAAATGGACGAGGCGGCAATGTGATAAAGAGGGGCAAAGCGAGCGCTC CATTTGATAGACAGCTGGATCAGGTGAGACAGGTGGGACAGGTGCGCAAAAAGGGCAGCACGAAA GAGAGGGTATAAAAATGGCAAAGGCCATGGGAAAAAAATTACAGC Right flanking sequence: Indices 18350564 -- 18351063 CGACTTTTATTGAAATGAAATTTGCCGTAAAAACGAAGCTAAAAAAGCGAAACAAAAAGGAATTT GTGACAAAACGAAGGAAACGCACAATGGGCTAATTAAAGTACGAGAAGAAGGACGACTCGTAAAT TCGATTAGTCGCCAGTTCGATTCCATTCTACTTAGCAACAATTTAATCTTTAAAGCTGCCCGCCT TCAATTGAATTTCAAAATTATTTTGCCGAAAAGGATTGAGGAGAGCAGACGCCCCCGACTTATTT ACCATCAATCAACGGCGCAAACAAAGCCAATAGCAAGTTCAGGCCCGGGAAAAACTTGGCTATAA TCTGCCCAGGGGCTTACAGTACGAAAATTTTAATTATGCCCGGCTTAATGCTGGAAAAACTTTTG CCACGGTCAGTTTGCCTCGCCCTCTGCCTTTTGCAACTCTCCCTTGACAACACAACTGAAATAGC AAAACTTTCGCAACATTTTATTTATTTGCCAAAAAAAACGAATAA Found at i:18351214 original size:7 final size:7 Alignment explanation
Indices: 18351202--18351220 Score: 38 Period size: 7 Copynumber: 2.7 Consensus size: 7 18351192 TCGCAATCCC 18351202 CAAAATA 1 CAAAATA 18351209 CAAAATA 1 CAAAATA 18351216 CAAAA 1 CAAAA 18351221 CAACTGCTTA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.74, C:0.16, G:0.00, T:0.11 Consensus pattern (7 bp): CAAAATA Left flanking sequence: Indices 18350702 -- 18351201 TCGCCAGTTCGATTCCATTCTACTTAGCAACAATTTAATCTTTAAAGCTGCCCGCCTTCAATTGA ATTTCAAAATTATTTTGCCGAAAAGGATTGAGGAGAGCAGACGCCCCCGACTTATTTACCATCAA TCAACGGCGCAAACAAAGCCAATAGCAAGTTCAGGCCCGGGAAAAACTTGGCTATAATCTGCCCA GGGGCTTACAGTACGAAAATTTTAATTATGCCCGGCTTAATGCTGGAAAAACTTTTGCCACGGTC AGTTTGCCTCGCCCTCTGCCTTTTGCAACTCTCCCTTGACAACACAACTGAAATAGCAAAACTTT CGCAACATTTTATTTATTTGCCAAAAAAAACGAATAACGAAAAGCATCTAAGGAGCAAAAAAAGA GCGAAAGAGAAAAGTTTAATTTAGAAAACCCTTTTTTCACAAAGCTCCAGAGATTTCCCCGCCGG CGACCGGGGAAAACTGTCAACCAATTTTAATTGACTCGCAATCCC Right flanking sequence: Indices 18351221 -- 18351720 CAACTGCTTAAAAGAGACAATATCACAATATCAAATACGCATTACTTTCTGCACCCAATTTTAAT TGGCCCTGGACCCAGAACATTGCGCACTACAAAGTTGGGGTAGGGAAATTTATTTCTGCCCACTC TGGCGTAAAATTAAGGCACAAGCTGTCTTGTGTTTTCCTTTCGTTATTTTTTATTTCCGTCTCAA TTGCTGCACTAAATACTTTGCACAAACATTTCACAAAAGCGAAGCGAAGCGAATGTGGGAACCAG TTTTTGCCGCTCCCCGTCCCGGAATCGCGTGTCCCAGCCCGAGACATATGTTAATTTTTGCCCGC ACTCTCCCGACAGGATGATACTTTATCAGCCCTTTAAGCTGGATATAGCCTTTTTGCCCTTTTTG CCTGTTGTTAAATTAGCTAGATATGCCTATGCCGCCTATTCCCGGCATTTTCAACGCTCGAGTGA GAAAACCGTGGCTAAATCAACATTTGATCGGCGTTTGCGAGTTAA Found at i:18351250 original size:8 final size:8 Alignment explanation
Indices: 18351237--18351257 Score: 35 Period size: 8 Copynumber: 2.8 Consensus size: 8 18351227 CTTAAAAGAG 18351237 ACAATATC 1 ACAATATC 18351245 ACAATATC 1 ACAATATC 18351253 A-AATA 1 ACAATA 18351258 CGCATTACTT Statistics Matches: 13, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 7 4 0.31 8 9 0.69 ACGTcount: A:0.57, C:0.19, G:0.00, T:0.24 Consensus pattern (8 bp): ACAATATC Left flanking sequence: Indices 18350737 -- 18351236 TAATCTTTAAAGCTGCCCGCCTTCAATTGAATTTCAAAATTATTTTGCCGAAAAGGATTGAGGAG AGCAGACGCCCCCGACTTATTTACCATCAATCAACGGCGCAAACAAAGCCAATAGCAAGTTCAGG CCCGGGAAAAACTTGGCTATAATCTGCCCAGGGGCTTACAGTACGAAAATTTTAATTATGCCCGG CTTAATGCTGGAAAAACTTTTGCCACGGTCAGTTTGCCTCGCCCTCTGCCTTTTGCAACTCTCCC TTGACAACACAACTGAAATAGCAAAACTTTCGCAACATTTTATTTATTTGCCAAAAAAAACGAAT AACGAAAAGCATCTAAGGAGCAAAAAAAGAGCGAAAGAGAAAAGTTTAATTTAGAAAACCCTTTT TTCACAAAGCTCCAGAGATTTCCCCGCCGGCGACCGGGGAAAACTGTCAACCAATTTTAATTGAC TCGCAATCCCCAAAATACAAAATACAAAACAACTGCTTAAAAGAG Right flanking sequence: Indices 18351258 -- 18351757 CGCATTACTTTCTGCACCCAATTTTAATTGGCCCTGGACCCAGAACATTGCGCACTACAAAGTTG GGGTAGGGAAATTTATTTCTGCCCACTCTGGCGTAAAATTAAGGCACAAGCTGTCTTGTGTTTTC CTTTCGTTATTTTTTATTTCCGTCTCAATTGCTGCACTAAATACTTTGCACAAACATTTCACAAA AGCGAAGCGAAGCGAATGTGGGAACCAGTTTTTGCCGCTCCCCGTCCCGGAATCGCGTGTCCCAG CCCGAGACATATGTTAATTTTTGCCCGCACTCTCCCGACAGGATGATACTTTATCAGCCCTTTAA GCTGGATATAGCCTTTTTGCCCTTTTTGCCTGTTGTTAAATTAGCTAGATATGCCTATGCCGCCT ATTCCCGGCATTTTCAACGCTCGAGTGAGAAAACCGTGGCTAAATCAACATTTGATCGGCGTTTG CGAGTTAACAAGACTCGACAGCTGCCTTTCGCTAAGGGATGAAAT Found at i:18351608 original size:9 final size:9 Alignment explanation
Indices: 18351594--18351612 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 18351584 CTGGATATAG 18351594 CCTTTTTGC 1 CCTTTTTGC 18351603 CCTTTTTGC 1 CCTTTTTGC 18351612 C 1 C 18351613 TGTTGTTAAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.00, C:0.37, G:0.11, T:0.53 Consensus pattern (9 bp): CCTTTTTGC Left flanking sequence: Indices 18351094 -- 18351593 GAAAGAGAAAAGTTTAATTTAGAAAACCCTTTTTTCACAAAGCTCCAGAGATTTCCCCGCCGGCG ACCGGGGAAAACTGTCAACCAATTTTAATTGACTCGCAATCCCCAAAATACAAAATACAAAACAA CTGCTTAAAAGAGACAATATCACAATATCAAATACGCATTACTTTCTGCACCCAATTTTAATTGG CCCTGGACCCAGAACATTGCGCACTACAAAGTTGGGGTAGGGAAATTTATTTCTGCCCACTCTGG CGTAAAATTAAGGCACAAGCTGTCTTGTGTTTTCCTTTCGTTATTTTTTATTTCCGTCTCAATTG CTGCACTAAATACTTTGCACAAACATTTCACAAAAGCGAAGCGAAGCGAATGTGGGAACCAGTTT TTGCCGCTCCCCGTCCCGGAATCGCGTGTCCCAGCCCGAGACATATGTTAATTTTTGCCCGCACT CTCCCGACAGGATGATACTTTATCAGCCCTTTAAGCTGGATATAG Right flanking sequence: Indices 18351613 -- 18352112 TGTTGTTAAATTAGCTAGATATGCCTATGCCGCCTATTCCCGGCATTTTCAACGCTCGAGTGAGA AAACCGTGGCTAAATCAACATTTGATCGGCGTTTGCGAGTTAACAAGACTCGACAGCTGCCTTTC GCTAAGGGATGAAATTGCAAGTTAATCTGTGAGGGTTGTAAGCCGGTGGAGAGGGCTAGGATTAG GCTACAAGTTAATCAAATTATTGCACAGAAAACCATGTAATTAGGGTTTGTATCCTTGCGATGTT TTTGATTAGGTAACTAATTCCAAGTGTCTATATCTTCTTAACACTTTAAGTTGTCAAAAATTTGC AAAAATATTAAAGAGTAAATTTGTATTTTAAGCTTTTTCATAAATACATATATGAAAAAAAAGTT CCTGCATATATCTATTAAAACAAAAAGCGCATAAAGAAGTTTCGTGTTTTTAAATGAAAGAACAA TTATTTTATTTCCTCTTTTTGATTAACATCTGAATAAGGCTGCTC Found at i:18352386 original size:9 final size:9 Alignment explanation
Indices: 18352359--18352388 Score: 46 Period size: 9 Copynumber: 3.3 Consensus size: 9 18352349 TTGTGCTTCA 18352359 GACTGTGAT 1 GACTGTGAT * * 18352368 GCCTGCGAT 1 GACTGTGAT 18352377 GACTGTGAT 1 GACTGTGAT 18352386 GAC 1 GAC 18352389 GAACTCTGCG Statistics Matches: 17, Mismatches: 4, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 9 17 1.00 ACGTcount: A:0.20, C:0.20, G:0.33, T:0.27 Consensus pattern (9 bp): GACTGTGAT Left flanking sequence: Indices 18351859 -- 18352358 ATCCTTGCGATGTTTTTGATTAGGTAACTAATTCCAAGTGTCTATATCTTCTTAACACTTTAAGT TGTCAAAAATTTGCAAAAATATTAAAGAGTAAATTTGTATTTTAAGCTTTTTCATAAATACATAT ATGAAAAAAAAGTTCCTGCATATATCTATTAAAACAAAAAGCGCATAAAGAAGTTTCGTGTTTTT AAATGAAAGAACAATTATTTTATTTCCTCTTTTTGATTAACATCTGAATAAGGCTGCTCTTCGCC CATGTCAGTACTGTGAGAAGTATAAGGTTAACTACTTAACCTGACAAATTGTTTAGCAGCGCTTG GCTTTCTCCTTGTAGTTTCGATTGAACGTTTGAAGATGAGTTCGACGTTGACTGCGACGATGAAT GTGACGATGATTGAGACGACGACTCGGACTTCGACTCCGACTGAGTCTTGGAGCTCGATTGATCT AGTAGCAAGGTATTTCGATTGCCAGCCTCCTGTCGTTGTGCTTCA Right flanking sequence: Indices 18352389 -- 18352888 GAACTCTGCGAGTTTTGTGAGTTACTGTGCGAGCTTGAAGAAGAGGTTTTCTGATCATTTTCCGT CTGAATTCGCAGTTGTTCCTGCTCCTTCAATCGCTGAAGAGCGGCGCTTTGAGATGCAGAACTTT CTGTGCCTTGTAGGGAACTAGTCTGCAGGCCAGTGGATCCAGCTTGAAGACCCTGCTGTGAGCCT TGAGCTCCAGTACTTTGTATATCTTGCTGTAACTTGGTCTGAGAACTAGAGCCAGCAGATGAGGA CTGTTGTTTATTGATTGATTCCTGAGCTTGTTGTTCCTTCTGTTGTTGTCCTAGCAACAGCTGTG CGTTTTGTTGTTTTTTAATATCATTTTGTCTACGCTGCAAAAGGCTCAATATATTTTGATGCTTT TTTAATTCTTGCTGTAGACGAAACTGATCTCGGTAATCCGACAAATCATTGAAATCCGGCGATAA AATATACAGTCCTGTTGAAGCTGGCTTGCCAATTAGCCCTCCGCC Found at i:18355356 original size:7 final size:7 Alignment explanation
Indices: 18355344--18355357 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 18355334 AGAAAATAAA 18355344 TAAAATG 1 TAAAATG 18355351 TAAAATG 1 TAAAATG 18355358 GGCCACAACT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29 Consensus pattern (7 bp): TAAAATG Left flanking sequence: Indices 18354844 -- 18355343 TTTTTCAAGATTTTTCCTGAAGCAATGCTTGCACAAAAAAGACTCACTGGGCACCAAAGTGCCGA GGAGAATTAGGGCAATAAACTGTTGGCACGTCAAAGTCCACATCTTTGGACCAAGTTCGAGATCA AGTCGAAAATGTGTCTTATATAGGGCATGAGGCCATAACACCGTGAAATAAAATATGCCATGGTT TAAATGGGTTCTCCTACCGAAGATAAGCACATTATTATGCTTTTACATCACAAAAGGTTATAGAT CTAGAAACCTTGGCCATAAAAATGTTCTGAAAAGGAAAAAAAAAAATTATTTGCAGAACATTTTA ATATTTTAAAAATAAATTGCTTGTTGAAGGAACGGTCAAATATGAATTCATTTACATATCAGTTC ATTTTCAACAAAATTGATAAAGTTTCGAGTAACTTAATTCCCATTTACAACACCCCCAAGACCAT TAACCATAACAGCCGTAGTGCACCTTAAAAAAAGTAGAAAATAAA Right flanking sequence: Indices 18355358 -- 18355857 GGCCACAACTTGTTTAAAAAATAAACTTAATTAAATTGAAGGCATTGAACGATGCAACAACTTTA CAACGCTGTGCAACATAAATGGGTAAACTGTATGGAAAAACATATATTGATTAATAAAAGGGATG AACGAAAAAACGTGAAATATACAAGTGCAGGCTGAAACTGAAACGCAGTCTCTTCAAACGGCTGA CTCAATATAAATTTTCCGAAACTGCTTGTGTAATGTGAGAAAAGCAAAGTTTTCAGCCTGATTGT TTTGAGTTTGCCTGCGTGGGGAGGGGAAAAACTATTTGATGATGACAAAAGTCGGTTTTTTTGCC AGACTCCTAAAGAGATTGCCTGCGGGGCGTTCGTCTATTGTGATTATGCGATGGCATTCCCCACT GACAGCGAGCCCAAGGGGCAATCTGCAGCCAAGTCAAGCCGCACGGAAGCAACAAGCAACAACCT CGGCTGCAGTAACGTGCAACAACAGCAGCTGCAACACCAGCGTCA Found at i:18355806 original size:7 final size:7 Alignment explanation
Indices: 18355794--18355809 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 18355784 AGCCGCACGG 18355794 AAGCAAC 1 AAGCAAC 18355801 AAGCAAC 1 AAGCAAC 18355808 AA 1 AA 18355810 CCTCGGCTGC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.62, C:0.25, G:0.12, T:0.00 Consensus pattern (7 bp): AAGCAAC Left flanking sequence: Indices 18355294 -- 18355793 ACCATTAACCATAACAGCCGTAGTGCACCTTAAAAAAAGTAGAAAATAAATAAAATGTAAAATGG GCCACAACTTGTTTAAAAAATAAACTTAATTAAATTGAAGGCATTGAACGATGCAACAACTTTAC AACGCTGTGCAACATAAATGGGTAAACTGTATGGAAAAACATATATTGATTAATAAAAGGGATGA ACGAAAAAACGTGAAATATACAAGTGCAGGCTGAAACTGAAACGCAGTCTCTTCAAACGGCTGAC TCAATATAAATTTTCCGAAACTGCTTGTGTAATGTGAGAAAAGCAAAGTTTTCAGCCTGATTGTT TTGAGTTTGCCTGCGTGGGGAGGGGAAAAACTATTTGATGATGACAAAAGTCGGTTTTTTTGCCA GACTCCTAAAGAGATTGCCTGCGGGGCGTTCGTCTATTGTGATTATGCGATGGCATTCCCCACTG ACAGCGAGCCCAAGGGGCAATCTGCAGCCAAGTCAAGCCGCACGG Right flanking sequence: Indices 18355810 -- 18356309 CCTCGGCTGCAGTAACGTGCAACAACAGCAGCTGCAACACCAGCGTCAACAGCAACTTCAACGCT TCATTACAAAAGTCTGGTCAGGAAGGAGGCGTTTCCCAAAAGAGACCAACGAGAAATGAGAAACC CGATAGTGAGAAAGAAAAAGTGCAAATAGCAGAAGTCTCTGTACTTTTCCTTCATCTTCAACTTA TCTGGCAGATACAATTGCTGAGTTACTCTCTCATGGCAAAAGAAAAGCAAAACATTCGAGGGAAA ACCAGACGACTGCCTTCTGCTTGAAGCTCGGCAGGTGGCAATTGAAATTATGCAACAGTTTTCAG CAAAGTTTATTTAAAGTGGGAAAGCTCTCTGGGCAGCCGCAACATTTTGCAATTCTCACACTTAT TGCGGATTTTGTTTCTTTTACGTCTGCCAACCTTGACATAGTTTTATTTAATTGAGGAAAAGAAC CTATACAATGGAGTTAACTCACAACCAGCTGCTAATCAGCAGCCC Found at i:18357082 original size:7 final size:7 Alignment explanation
Indices: 18357066--18357083 Score: 29 Period size: 7 Copynumber: 2.6 Consensus size: 7 18357056 GCCACCTCAG * 18357066 ATTATAT 1 ATTGTAT 18357073 ATTGTAT 1 ATTGTAT 18357080 ATTG 1 ATTG 18357084 CCATTAGAGC Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56 Consensus pattern (7 bp): ATTGTAT Left flanking sequence: Indices 18356566 -- 18357065 TTGTTATGCGGGCCTTGTGCGTTGCCGATTGTTGTCAGTGCTGCTCGGAAAATGAGTGCAATCTG CGGTTAGTTATCGCCCGGGGGTGTCTCGAATGAATGGTTTGATGCCAAAGTAAAGGGAGTTGGCC TACTGCTGGGCTTCTGCATTGAAATGACCTAATGAAATTACTGACAAGAGACGGTTATCACTAAT TTCCAATTATAATCGCACAGATGAGCATTCAAAGGTTTAATCAATTTGTTTTGCAATTGAGAATC TGATTGATCAAATTAAGCATACTCAAAAAAAACAAGTACCAGTATATAATATTGTCGGGACTTAT GCTGACTGCAAAATAAAATTAGCTCATTTGGTGCTTGTTGTCACAGTCTATTCAAATTCAAATCC ATCTGAATCCATCTAGCAGCTAATTCCGTTTAACAGAATCCGAAAAGGTGCTCAGATTTGAAGTC GCACACAAGCAATTACCTTCTGGCGAACTATCGATGCCACCTCAG Right flanking sequence: Indices 18357084 -- 18357583 CCATTAGAGCGTATATCTCGCTTATAATTCCTATAAATCTGCTCATTCCGAATGTATCTACGTAT ATACACATGAGTTGTCCGTGCTGAACAGTCGTGTTGACAGTGTATGTCCGGGGTCTCCGCCCCTC TCTAATCGCCGGTATCCAGCTGAGCCAGCAGCTGAGTTTTTCCTGACGCTGCTTCCACTTGAATA GCAGGCTGTTAACATGTTGCAGCATTGCACACAGTTACACGCGTCGCCCCTTAGGAGTTTTGCCC CCCACCAATGCAGCCATTTTCCGTCTCAACTGATGTTGCTGCTGCTTTTGCTGTTGCTATTGCTG TTGCCAGTGTCATCTGTCAATATTGATTTAAAATCAATTCATCTCCCGTTGCGCCAATGTCTGAT TTTCGACGGTCCGAGCGCACAGCTTGAGGTTTTCATTAGCCGGGAGAATTTTTCACCAATTTCCC CCTCTAAGCAGACAAATTTGCCGCCATGGCGCTTCAAGCATTTGC Found at i:18357719 original size:10 final size:10 Alignment explanation
Indices: 18357700--18357719 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 18357690 TCTCCGTTCA 18357700 TAACATTCCT 1 TAACATTCCT * 18357710 TAATATTCCT 1 TAACATTCCT 18357720 ATCTTGTTTC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.30, C:0.25, G:0.00, T:0.45 Consensus pattern (10 bp): TAACATTCCT Left flanking sequence: Indices 18357200 -- 18357699 GGTCTCCGCCCCTCTCTAATCGCCGGTATCCAGCTGAGCCAGCAGCTGAGTTTTTCCTGACGCTG CTTCCACTTGAATAGCAGGCTGTTAACATGTTGCAGCATTGCACACAGTTACACGCGTCGCCCCT TAGGAGTTTTGCCCCCCACCAATGCAGCCATTTTCCGTCTCAACTGATGTTGCTGCTGCTTTTGC TGTTGCTATTGCTGTTGCCAGTGTCATCTGTCAATATTGATTTAAAATCAATTCATCTCCCGTTG CGCCAATGTCTGATTTTCGACGGTCCGAGCGCACAGCTTGAGGTTTTCATTAGCCGGGAGAATTT TTCACCAATTTCCCCCTCTAAGCAGACAAATTTGCCGCCATGGCGCTTCAAGCATTTGCAAACTT TTGCATTTCGGAAAACTTCAATCAATTCATTCGGTTTAAAATATCGTTACGCTTTAAACTTTTAT AAAAAGTGAATGGGTTCAAGTTACTTTAAGATTGGTCTCCGTTCA Right flanking sequence: Indices 18357720 -- 18358219 ATCTTGTTTCCGAATTATTTTTGTGGAATTTAACAAAATATGGTAGCGTTAGAATTCAAACCAAT TTCCAAAGTCGCACTTTACTTGTGTAAACGCCCCGGGCGAATGCCTCTTGAATTAATCAAATTTA GAGCCACGACGACGCACCTAAAAAAAAAAAACTGAGGAAATGTAATTCATGTGTAGGACGGTGGC TCGATGACGATGGCCGATCCCTCATTCTCGGTCTTCATGACACTTGTCCATCAGTTGGCCAAACA AAACGGGTGGAGGCGTCATTTGAGACGTGTTCGCTCCACCCAAAACGACAGCGATGACGATTACA TGGCGGGCACAACCGGGAGAAACTACTGGAACTACTGAAAGTACAGAAACTAAAAAAGCAAAAGG CAAAAAGCAAAAACCAACCACCCACCCGATCCAGCGACTCTGACACGAGTTCAATGCTCCTTTGC AAATATGCAAATTCCCGCTCGATGCGATTCAATTTTTTTTTGTAT Found at i:18358079 original size:9 final size:9 Alignment explanation
Indices: 18358063--18358096 Score: 47 Period size: 9 Copynumber: 3.8 Consensus size: 9 18358053 ACAACCGGGA 18358063 GAAACTACT 1 GAAACTACT * 18358072 GGAACTACT 1 GAAACTACT * * 18358081 GAAAGTACA 1 GAAACTACT 18358090 GAAACTA 1 GAAACTA 18358097 AAAAAGCAAA Statistics Matches: 20, Mismatches: 5, Indels: 0 0.80 0.20 0.00 Matches are distributed among these distances: 9 20 1.00 ACGTcount: A:0.47, C:0.18, G:0.18, T:0.18 Consensus pattern (9 bp): GAAACTACT Left flanking sequence: Indices 18357563 -- 18358062 CATGGCGCTTCAAGCATTTGCAAACTTTTGCATTTCGGAAAACTTCAATCAATTCATTCGGTTTA AAATATCGTTACGCTTTAAACTTTTATAAAAAGTGAATGGGTTCAAGTTACTTTAAGATTGGTCT CCGTTCATAACATTCCTTAATATTCCTATCTTGTTTCCGAATTATTTTTGTGGAATTTAACAAAA TATGGTAGCGTTAGAATTCAAACCAATTTCCAAAGTCGCACTTTACTTGTGTAAACGCCCCGGGC GAATGCCTCTTGAATTAATCAAATTTAGAGCCACGACGACGCACCTAAAAAAAAAAAACTGAGGA AATGTAATTCATGTGTAGGACGGTGGCTCGATGACGATGGCCGATCCCTCATTCTCGGTCTTCAT GACACTTGTCCATCAGTTGGCCAAACAAAACGGGTGGAGGCGTCATTTGAGACGTGTTCGCTCCA CCCAAAACGACAGCGATGACGATTACATGGCGGGCACAACCGGGA Right flanking sequence: Indices 18358097 -- 18358596 AAAAAGCAAAAGGCAAAAAGCAAAAACCAACCACCCACCCGATCCAGCGACTCTGACACGAGTTC AATGCTCCTTTGCAAATATGCAAATTCCCGCTCGATGCGATTCAATTTTTTTTTGTATTTTTTTT TTATATTTTGGGTACGCGCGCACGCACAGCCAACTTGAAAAGCGGCTTAAAGTTGTTCCACGGCC TTGTTATTTAAGAATTACTGGGTAAAAATAATGTTAACTTCGCTCTTGGCCATGCAAGGACCCAC TCGCAATGCAAACGAGTAGAAAATGCGCTTTTCATTTGCGATTCTGGACCCTCCGACTCCTCATT TCAATTGCATTCAACGACGCTTAACATTTTCACTACCAAAATGAATTGCACACACAACGCACTCG TATCAATAAATTTTCGCTCAACAAAAGGAGGCGGGAAAAGGGCTTTCCACTACCGGGGGAAAAGC CATGAATGACACGAGGACTACAAGGCCTCGAATAGCGTGGAAAAT Found at i:18358112 original size:7 final size:7 Alignment explanation
Indices: 18358097--18358126 Score: 46 Period size: 7 Copynumber: 4.3 Consensus size: 7 18358087 ACAGAAACTA 18358097 AAAAAGC 1 AAAAAGC * 18358104 AAAAGGC 1 AAAAAGC 18358111 AAAAAGC 1 AAAAAGC * 18358118 AAAAACC 1 AAAAAGC 18358125 AA 1 AA 18358127 CCACCCACCC Statistics Matches: 20, Mismatches: 3, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 7 20 1.00 ACGTcount: A:0.70, C:0.17, G:0.13, T:0.00 Consensus pattern (7 bp): AAAAAGC Left flanking sequence: Indices 18357597 -- 18358096 TCGGAAAACTTCAATCAATTCATTCGGTTTAAAATATCGTTACGCTTTAAACTTTTATAAAAAGT GAATGGGTTCAAGTTACTTTAAGATTGGTCTCCGTTCATAACATTCCTTAATATTCCTATCTTGT TTCCGAATTATTTTTGTGGAATTTAACAAAATATGGTAGCGTTAGAATTCAAACCAATTTCCAAA GTCGCACTTTACTTGTGTAAACGCCCCGGGCGAATGCCTCTTGAATTAATCAAATTTAGAGCCAC GACGACGCACCTAAAAAAAAAAAACTGAGGAAATGTAATTCATGTGTAGGACGGTGGCTCGATGA CGATGGCCGATCCCTCATTCTCGGTCTTCATGACACTTGTCCATCAGTTGGCCAAACAAAACGGG TGGAGGCGTCATTTGAGACGTGTTCGCTCCACCCAAAACGACAGCGATGACGATTACATGGCGGG CACAACCGGGAGAAACTACTGGAACTACTGAAAGTACAGAAACTA Right flanking sequence: Indices 18358127 -- 18358626 CCACCCACCCGATCCAGCGACTCTGACACGAGTTCAATGCTCCTTTGCAAATATGCAAATTCCCG CTCGATGCGATTCAATTTTTTTTTGTATTTTTTTTTTATATTTTGGGTACGCGCGCACGCACAGC CAACTTGAAAAGCGGCTTAAAGTTGTTCCACGGCCTTGTTATTTAAGAATTACTGGGTAAAAATA ATGTTAACTTCGCTCTTGGCCATGCAAGGACCCACTCGCAATGCAAACGAGTAGAAAATGCGCTT TTCATTTGCGATTCTGGACCCTCCGACTCCTCATTTCAATTGCATTCAACGACGCTTAACATTTT CACTACCAAAATGAATTGCACACACAACGCACTCGTATCAATAAATTTTCGCTCAACAAAAGGAG GCGGGAAAAGGGCTTTCCACTACCGGGGGAAAAGCCATGAATGACACGAGGACTACAAGGCCTCG AATAGCGTGGAAAATATTTTATTAAATGCAATCGCCATTGAGTAC Found at