TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_2L assembled 2004-4-6 md5checksum:29037f68a520aa000acffb8837e59820 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 22407834 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Warning! 100 characters in sequence are not A, C, G, or T Found at i: i:18359547 original size:10 final size:10 Alignment explanation
Indices: 18359532--18359551 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 18359522 GGGTCTTTGT 18359532 CGGCAACTAC 1 CGGCAACTAC 18359542 CGGCAACTAC 1 CGGCAACTAC 18359552 TACTAGTAGT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.30, C:0.40, G:0.20, T:0.10 Consensus pattern (10 bp): CGGCAACTAC Left flanking sequence: Indices 18359032 -- 18359531 ATAACAGAAATTGACAATTATAAAGCAAATTGTGGGCAAAAGTAAATGAAATTAGTTTACTGGTT TATAAGCCTAATTCAAATGCAAAATGCTCACACACAAAACTTTCGTCACACATGTTGGCCATAAA ATTTGCATACACACAACTACAAGCCTTTATGACTTATAGAGAGCCCCCAAAAATGTAATCAACAT TCGCCAAATGTACCATGTGAATTTAAATTTGCGATTTAATTAAATCAAAGCATAAATTGTCTGAA CTTTAAATGTGGTTGGGGCACATGATGGCCTCAAGGAAAATGAGTTTGGTCTGGTTTTGTGTTAA GAAAGATATGCACGTGTTGTTCTTACAAATGAGTTTCCATTAAACGTAGACAATTGAAAATTCAA TTTTAATAACTGTTGGTGTGTGTTTGTTGACATTTTGATTATCCATTAGATAACTTAATAAGGAG AGGAGTCATTTCCCTGAATGATTGATAATTACTCAGGGTCTTTGT Right flanking sequence: Indices 18359552 -- 18360051 TACTAGTAGTAAAATGTAGTCGCACAAAACTGTAAACTTATTTTGGGTTATAAAATCATCAGATA GATTATAAGGTAACTAACAAATTTGTTGGCAGTTTCATAATAAATAAATGGGACACATAGATGCG AACATAACTTAGTCGGTGCCGCAAGTTGTTTTGTAAGACAATTTGGCCTACGTTGTTGGCACCTT AATTCACTTAGACGAAGAAACTTGTAAAAATGTATTGCCATGAAAATGCCAAGACAGCAACAACA TGTAAACTAATTTCAGTTGAGTGACATACATTGGAGCAGAGGGAAGGGCGGGATCCCAGGTAAAT GCTGCATGTGCAACATGCACACACACACACGTGCGGCCAATTTTGGGGTGACGGAGAATTTTAAA GTTTTGCGTCTCTAATTAAATTAAGCAAGAGGCCAACTAGAAAAGTTTTCCAACACCTGTGACAG CGCCTTTCGGACCTCCTGTTTCAGTAAAATTCCCACCACTTAAGG Found at i:18360569 original size:9 final size:8 Alignment explanation
Indices: 18360555--18360577 Score: 37 Period size: 8 Copynumber: 2.8 Consensus size: 8 18360545 CTTTTTGCGA 18360555 TGATGATGT 1 TGATGAT-T 18360564 TGATGATT 1 TGATGATT 18360572 TGATGA 1 TGATGA 18360578 GGATATGGCG Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 8 7 0.50 9 7 0.50 ACGTcount: A:0.26, C:0.00, G:0.30, T:0.43 Consensus pattern (8 bp): TGATGATT Left flanking sequence: Indices 18360055 -- 18360554 TTTTCATCACCTGTTTTCGCATAGGGTCTTGGGGAGCAAAATTACTTAAATAATTACTAAAGTTG TCTCAGCCAAAAAATTTTAGATTTATGGGGTGAAGTGCAGGAACTTTTGATGTATTTTCTTAGAT CATTTTTGCATGCTTTTCCTTGTTAATTATTTCTCAGGGTATGCATTTTGTAAAGGTTCATTTTA AAACTGAAGTTTTTTTATTCAAAGTAGCCAAGCCCAATGGAATATTTAACATTGTAAAGAAATCG ATATGTTATTAAAATTATAATGCTTGACCGAAAGCAGTATATTGGTGGATAAATTTTCCTCAGTT GTAACTATTGCACCATTGTTGCGAAACATTGTTGTCGCTGCAACATTTGGCTTAGATACATGTGT AAGGGTGCAAAATCACCCCTTAAAATGTTGGGAAACCTTTTTGTGAATTGCAGCCAATGGAAACT GTAGGTATTGGCATCTCTTGGTATGATGATGTTTGCTTTTTGCGA Right flanking sequence: Indices 18360578 -- 18361077 GGATATGGCGTATATAGCGGCAGATTGCTCACCCCGAAAAGCCGCAGGAAACCCAATGGCCATCA CAGGTTTCTGTGGCCCTCAACGGTAAAAGTAAGCGCAATTTGGTAAGCGAAAATTTCATTAGAGC TAGCGAAATTTAATAAACCCATAGCGACATCGTGCGGATGGCAAAAATGGCAGCACAGTAAACAT CAGCTTGAGGTGAACAGCAACCCCGGGGTTAGAAGCTTGCCATGTCCGCACCTTAACGAAGAAAA AAAGGGAAATGGTGGAAAAACCTCCAACAAAAATTAATTTTTCCAACCAAGGGTTGAGATAGTCG TTCTCAAAAAAGGGGGATCAAATATACATATCTCTAAAATTGTTCACGGTACAGCTTGTTTCGGA TAAATGCTTGGCATATTTTTGCGTTCCATTTGCATTGAGGTCATAGGTCACACATTTCTCTCACA CGGCGGGGCGGCGACCATTTTTGATTTATTCGACGCGCCCCGACA Found at i:18361568 original size:10 final size:10 Alignment explanation
Indices: 18361550--18361577 Score: 49 Period size: 10 Copynumber: 2.8 Consensus size: 10 18361540 TCAGGCTTTA * 18361550 ACCCACTTGC 1 ACCCGCTTGC 18361560 ACCCGCTTGC 1 ACCCGCTTGC 18361570 ACCCGCTT 1 ACCCGCTT 18361578 AACCCCCCGG Statistics Matches: 17, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 10 17 1.00 ACGTcount: A:0.14, C:0.50, G:0.14, T:0.21 Consensus pattern (10 bp): ACCCGCTTGC Left flanking sequence: Indices 18361050 -- 18361549 TTTTTGATTTATTCGACGCGCCCCGACACACAAACACAAAATGGAAATTTATTGGTTGCACCACA CAATTTTCCGCAAAAAGGTGAATCAGAGGCAAAAAAAATCTAGCTTTACTTTGTGGATTTCAAAA ATGGTGGCTTTTATGGGGTGGGTGGCTCAAAATGGCATTGATGTGGGTTAGAATAGCATAAGCCT GTAGTAAGCTTAGGATAACGAATTGCTAATAAATCGATGATAGTCTGGTACAAACGATTTTTGCT CTTAAGTACACAATCATTTTGTGGCAAATATATAGTTATATTGAAGTTTAAAAGATACGACATAC CTTAAGGAATAGCAGATGCACCACCTTTTTAACAGGCAAAGTATGTCACTCAGAGCGTAAAAAAT TGTTGGGCAATCTTTGTGTGGTTAAGAGCCCATTTAAATTTATCAATCAATTGCTCGTGCTGAGC AACTCAATCGAAAACAAATGCCACCCAATGCCACCTCAGGCTTTA Right flanking sequence: Indices 18361578 -- 18362077 AACCCCCCGGTGCACATCCTGTTAACAGCTATCTAAAATTCCATTCGCTTTGGTTGGCAATCAAA CTATCCGAATAGATTTGAATGTTCTGAACGCCACAAATTGAAAGACTCACCTGTGAGCGAGAAAA GTGAGAGAAATTTAGCAAAGGTCGTGAGGACAGGTGAATAATGTTCGCCCAACTGCGACTTCATT AATTTGAATGTGCAAAATAAATACGTGAAAAATGCTCTCATATTTCGGGAACAATTTAGGGGTCT TGGTTTTCGCAGTCGGTGGCCTCTACTGTAAAAAACGTAATTTGTAATGAAAATCAACCCGAAAT ACAGGCAGCAAAAGTTGACTGTGGCGCCCCATTTGGGCCACGGCTTGTGGCATTGTTGGCATTCC CATTTTCCAGCTCCTCCGTTGTTTCAGATACATTTTTGGTTTCTTTTTTTTTAATTTTTTGTGTC TTTTTGCATATGAAATATTTCATGAAGGCACTTTAAAGCTTTGTG Found at i:18362893 original size:8 final size:8 Alignment explanation
Indices: 18362877--18362894 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 18362867 ATCGTGACCT 18362877 CAAACACA 1 CAAACACA * 18362885 CAAATACA 1 CAAACACA 18362893 CA 1 CA 18362895 TCCACAAAGG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.61, C:0.33, G:0.00, T:0.06 Consensus pattern (8 bp): CAAACACA Left flanking sequence: Indices 18362377 -- 18362876 GCAGATATGGTAGCTGTATCTCTATATCTCCCTAAGCCGCAAAAGTTTTCGTCGGCAGGAGGAGG GAGGTGGGTGAAAATATTCTGGCCCCACAGTAATTAGAGTAATAAGCAGAGATGTATGACCCATC GGTGTGTTTTTGTGCACATATGTGGCTACGTGAAGTTTGGAATGTATCTTTCTATCTTATGCCGA AGTCTAGCCTCGTTTTTTGGCTGCTTTTTCCTTTATTCTATATCAGTTTAATATAAATTTTCCTT GGTATGAAGCATAACTAATTTCGTTATTTCTTTTGTTTCTTTACAGGTAATATCATATTTCAATT AAACCTCAAGCCAGATTCTTCAGCACAATAATGCAAATCAAACAATAAAAAAAAAAACCCTTCAA AGGTCCAATCATATATATATATGTCGGAGAGGGGCAACCATAATGTATTTGCTCAATTAATAGGC AATCAGTAAGTGCCCCATCTTAACCCTTTGAAGCCATCGTGACCT Right flanking sequence: Indices 18362895 -- 18363394 TCCACAAAGGCCCTCTTGTGGTCTGTGCTCCTTCAAACAGAAAAGTTAAAATGCAAATACAATTT GCCACTTTAAATCTACATAAATTGAAGTGTGGAAGGGGTAAGAAAAACAGAGGGGAAATCGAGGC ATTGGAGGCCCTCTTGAAACAGTTTACAATAAACCGGAGTAAGCCCCCCGTTTCAAGGGTGTTCC ATGTGGAAAGAAAATCAATGAACAAGATAAACGCTCACTAAAAATGAGTGTGACTAGAACAGAAT AGTAGTGTTAGCTGGCAAAAAAAAATGTGTGACTAAAAGGTAGTTGTGAAGGAAAAAAATGTTGG TTAGAGATGGTTGCCTAACTGGAATTGGTAACTCTATGAAAGCCTATAACGAAAGTTTTTTCAAT AGCAAATGTGATTATAGATAGACTTTGGTCCCTTTGGTGTCCCTGATTCTTACTGATTTTTACTT GAGGGCTGCAAACAAGGTCAATATAAATAGTGGCGAAATTTAAAA Found at i:18363342 original size:10 final size:10 Alignment explanation
Indices: 18363327--18363348 Score: 37 Period size: 10 Copynumber: 2.2 Consensus size: 10 18363317 TTTGGTGTCC 18363327 CTGATTCTTA 1 CTGATTCTTA * 18363337 CTGATTTTTA 1 CTGATTCTTA 18363347 CT 1 CT 18363349 TGAGGGCTGC Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.18, C:0.18, G:0.09, T:0.55 Consensus pattern (10 bp): CTGATTCTTA Left flanking sequence: Indices 18362827 -- 18363326 TAGGCAATCAGTAAGTGCCCCATCTTAACCCTTTGAAGCCATCGTGACCTCAAACACACAAATAC ACATCCACAAAGGCCCTCTTGTGGTCTGTGCTCCTTCAAACAGAAAAGTTAAAATGCAAATACAA TTTGCCACTTTAAATCTACATAAATTGAAGTGTGGAAGGGGTAAGAAAAACAGAGGGGAAATCGA GGCATTGGAGGCCCTCTTGAAACAGTTTACAATAAACCGGAGTAAGCCCCCCGTTTCAAGGGTGT TCCATGTGGAAAGAAAATCAATGAACAAGATAAACGCTCACTAAAAATGAGTGTGACTAGAACAG AATAGTAGTGTTAGCTGGCAAAAAAAAATGTGTGACTAAAAGGTAGTTGTGAAGGAAAAAAATGT TGGTTAGAGATGGTTGCCTAACTGGAATTGGTAACTCTATGAAAGCCTATAACGAAAGTTTTTTC AATAGCAAATGTGATTATAGATAGACTTTGGTCCCTTTGGTGTCC Right flanking sequence: Indices 18363349 -- 18363848 TGAGGGCTGCAAACAAGGTCAATATAAATAGTGGCGAAATTTAAAACATTCTTGGTTATTAAATA AATCTGAACATTTTATATTCCTTGAAATAAGTTCTCTTTACCTGATCTACTACAAATAATCTCAT TTCGGGAACCGTTCAATCATTTATTTTGCCAGCTGTGGGCTGACAGCTGAATTTTGTCAAATGCA AAAGATTGCACTCCTCTTTGTAATTACCTAGAAAACGTAGTCAGAAGCAAACGCATTCCATAATA AATTCATAATTGACAGAGGCCCTTCCCAAGTTACCCCCTTTGTAGACTTTGTTTGACAAATGTCC TGACGCCAGACGAATTTCACGCATAAACAGGCTGTTTCCACTGCCGACTTCCTCATCCTGTTTAG CTACTCCAACTCTACGCCTCTCCAGCGGCACTTCCGGCAAAACCCGGTGAGGGTTATTTTCCGGA ACCCTTTTGGGTAATTGCAAAAACTATTAAGCCAAATTATGGGTT Found at i:18364854 original size:8 final size:8 Alignment explanation
Indices: 18364841--18364856 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 18364831 TATTGCAAAT 18364841 CTCACATC 1 CTCACATC 18364849 CTCACATC 1 CTCACATC 18364857 AGCGCCTCTA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.25, C:0.50, G:0.00, T:0.25 Consensus pattern (8 bp): CTCACATC Left flanking sequence: Indices 18364341 -- 18364840 TTCGGTTTGGTTTTTGTGCACCATGGGTATACTTTTTCCCCGTAGAGCTCATCAGTTGATAAATA ATTTAAGCTACCGTATTTAAGAGGAATTATTGGCTGCAAAATACTCAATGGGGCAGGAGAGGTAA AAAGACGAATGATTGTTGCGACAATGGGTTGGAAGCCGACCAAATTGCAATTTAAATGCAATTCT TCATAATTTGATTGCAATGAAATTGTACTTATTTCGACACGGAGAACTGTAGTTTGCGGAGATTT TTAAACAGTTTCCAAATTGAATAGTTAATTTGTTCTGCGGCACATTTACAACCAGAGAAATATTA TTTAGCAGACCAAAACGGACATACTACTCGAAAATATGCACGAAAGTATCACAAGCATTCTTATC ATTATTTTTATTAATCTCTCCCCTTCTATGCTTTACTTAACACCGGCGAAAAAAATTAATTACAT TTGATTCGTTTATAAATAAGAAATATAACTTTTGCTATTGCAAAT Right flanking sequence: Indices 18364857 -- 18365356 AGCGCCTCTAAAGTATTTCCAAATTGAAATTCCCTAAATGCGTGTGCGCATATGTATTTTTTTCG AAATACCAGCCAAAAGGGTCCCATAGCCTGTTCACTGAAATTTTAATAACTCAATTACGCACACA TTTGAATTCATTAGCGCAAAACACCCGAAAGGGGGAAAATCAGCAGGAATAGGAAGGATGTTAAG GGTAGCCAGGAGGCAGTAACAAATATATACAATCAAATGTATATAAATCACATTTAGCGCCGAAA TAGCGTTGAGAACCGGGGGTTCCTTTTTATTTCCTATTCTAAAAAGGACCACAGGGGTGCATACA AAAATTCATATAGAGAATTTGGAAAATTATTACCTCTGCCGAAAGGAAAAGAAAAACTAATAACC ATGTACGGATTTAATAATAAATCAAGCACACGAGAGAGAGAGTGAGGACTTTATATGGTTATATG GAACAGGAAGCGGAAGGAGGGACTCATGGCACATTCTAAATCCGC Found at i:18365310 original size:8 final size:8 Alignment explanation
Indices: 18365297--18365312 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 18365287 AGTGAGGACT 18365297 TTATATGG 1 TTATATGG 18365305 TTATATGG 1 TTATATGG 18365313 AACAGGAAGC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50 Consensus pattern (8 bp): TTATATGG Left flanking sequence: Indices 18364797 -- 18365296 TGATTCGTTTATAAATAAGAAATATAACTTTTGCTATTGCAAATCTCACATCCTCACATCAGCGC CTCTAAAGTATTTCCAAATTGAAATTCCCTAAATGCGTGTGCGCATATGTATTTTTTTCGAAATA CCAGCCAAAAGGGTCCCATAGCCTGTTCACTGAAATTTTAATAACTCAATTACGCACACATTTGA ATTCATTAGCGCAAAACACCCGAAAGGGGGAAAATCAGCAGGAATAGGAAGGATGTTAAGGGTAG CCAGGAGGCAGTAACAAATATATACAATCAAATGTATATAAATCACATTTAGCGCCGAAATAGCG TTGAGAACCGGGGGTTCCTTTTTATTTCCTATTCTAAAAAGGACCACAGGGGTGCATACAAAAAT TCATATAGAGAATTTGGAAAATTATTACCTCTGCCGAAAGGAAAAGAAAAACTAATAACCATGTA CGGATTTAATAATAAATCAAGCACACGAGAGAGAGAGTGAGGACT Right flanking sequence: Indices 18365313 -- 18365812 AACAGGAAGCGGAAGGAGGGACTCATGGCACATTCTAAATCCGCATTTCAAAAAAGACAAATACA AGTACGAACAGTAGCTTGCATACAACAATGGCCATTAGCCGGAATTATTCCTCGCACTCCCAAAA TCGGACATTTATCATGCGTATTGCACAATGCTTTCCAAAAATGGCAGTTACATATGTCCCATTGT GGTGCTCTTCGCATTTCATTCATGGGAGCTCCTGATCTACCGAAAAGCCCCAGACAATGATCTCG AATCGGATGCGATGGTTTTTTCGGCCAGTTTTCAGATTCAGGTAGCAGATTCTAGTATAATCCTC ATTTTCGGCTAGTTTCCAAGTGGGATTTTCGACCCTCCGATCCTCTCGTTAGTTGGGATTAGCAA ACTCAGCTTGACTGCTATTATTGTTATTTTTCGTATTCACTATTCAATGAATCGAAATTGGGTTG TTCGAGGCGATAATTGACAGCTCAATTGGCGGGGTGGTTCTGCCT Found at i:18366314 original size:8 final size:8 Alignment explanation
Indices: 18366301--18366321 Score: 42 Period size: 8 Copynumber: 2.6 Consensus size: 8 18366291 AAGCCTTTAA 18366301 TCAAATTT 1 TCAAATTT 18366309 TCAAATTT 1 TCAAATTT 18366317 TCAAA 1 TCAAA 18366322 CAAATGACAA Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 13 1.00 ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43 Consensus pattern (8 bp): TCAAATTT Left flanking sequence: Indices 18365801 -- 18366300 GTGGTTCTGCCTGATGAGGTCACTTAAAGGTCACTCGAGGGCTTATCGCTGCCCATGGAGAGGTA AAAGGTGGAGGAATGGGCCTATATTTCCACAGGCCTAATATAAATATTTGAAATATTTTCAATTT TTTGCAATGTATGGTATTCGCCATAATTTCGTCCAATCGATAGATTTAGTTAGTTGAGTTTAGTT TAGTTAGTTTAGTTTATATGGATCTAAAAATCTCAAACTGAAGTATTTTCCCCTCTTATGTGTCA TAAAACTCCTTGTTACTAATTAATTTTAGTTTCATAATTAATCGCTCAGTCATGCATCATAAGCA TCTTGTACATACTTTGAGCACAATAAACTTTCACACAAATATTCCTAAAATTGAGTAGTAAGCCA AATGCACAATAATACGTATTTATGTAACTAATCTCATTAACACTTGAGTTAATTTTCCATCTATT GTGGGATTATTCTAATGAGGCCTACTGTTCAGCCGAAGCCTTTAA Right flanking sequence: Indices 18366322 -- 18366821 CAAATGACAAAAGAGGACGACGCGCAAATGTTCAAATTTTGTGCTACTTTGTGCTACTGCCATTT AACCATTTAAAGTCATTAACTGTCATTGTGGAAATGTAACTGAAGCTGAAACAGAGCACAATGCT GGCTCTGACAAACATTAGCTAAAATGCAATTTTCACAGCGCAAAGTGGGCAAGAAAGGCAGATTG TTTCAAGTTGGATGCAGACAGCACCTGTTTGCATTTTTCTCTTCGTTTTTTTTTTTTTTTTTTTT TTTTGTGCGCCACAGCAGCTGACACTTTTCCTGCTATTTGGCCCCAGGTAACAGAGAAGAGAAAA ACTTTTTCCCTGCCATTGTTGTGGCTGTTAAATCCAACCCGTAAGTAGCCCAAAAACTTCGATCT AATCCGGGCAAGAAGCCCTGAGGCCCTCTTGACGTCTCAATTTCCAAATGACCAAGCTAATCACA AAAGGCTGAGAGAATGGATTTCCCATCCTTTTTTGTTTTGTTCGT Found at i:18366374 original size:10 final size:10 Alignment explanation
Indices: 18366359--18366379 Score: 42 Period size: 10 Copynumber: 2.1 Consensus size: 10 18366349 ATGTTCAAAT 18366359 TTTGTGCTAC 1 TTTGTGCTAC 18366369 TTTGTGCTAC 1 TTTGTGCTAC 18366379 T 1 T 18366380 GCCATTTAAC Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.10, C:0.19, G:0.19, T:0.52 Consensus pattern (10 bp): TTTGTGCTAC Left flanking sequence: Indices 18365859 -- 18366358 AGAGGTAAAAGGTGGAGGAATGGGCCTATATTTCCACAGGCCTAATATAAATATTTGAAATATTT TCAATTTTTTGCAATGTATGGTATTCGCCATAATTTCGTCCAATCGATAGATTTAGTTAGTTGAG TTTAGTTTAGTTAGTTTAGTTTATATGGATCTAAAAATCTCAAACTGAAGTATTTTCCCCTCTTA TGTGTCATAAAACTCCTTGTTACTAATTAATTTTAGTTTCATAATTAATCGCTCAGTCATGCATC ATAAGCATCTTGTACATACTTTGAGCACAATAAACTTTCACACAAATATTCCTAAAATTGAGTAG TAAGCCAAATGCACAATAATACGTATTTATGTAACTAATCTCATTAACACTTGAGTTAATTTTCC ATCTATTGTGGGATTATTCTAATGAGGCCTACTGTTCAGCCGAAGCCTTTAATCAAATTTTCAAA TTTTCAAACAAATGACAAAAGAGGACGACGCGCAAATGTTCAAAT Right flanking sequence: Indices 18366380 -- 18366879 GCCATTTAACCATTTAAAGTCATTAACTGTCATTGTGGAAATGTAACTGAAGCTGAAACAGAGCA CAATGCTGGCTCTGACAAACATTAGCTAAAATGCAATTTTCACAGCGCAAAGTGGGCAAGAAAGG CAGATTGTTTCAAGTTGGATGCAGACAGCACCTGTTTGCATTTTTCTCTTCGTTTTTTTTTTTTT TTTTTTTTTTTGTGCGCCACAGCAGCTGACACTTTTCCTGCTATTTGGCCCCAGGTAACAGAGAA GAGAAAAACTTTTTCCCTGCCATTGTTGTGGCTGTTAAATCCAACCCGTAAGTAGCCCAAAAACT TCGATCTAATCCGGGCAAGAAGCCCTGAGGCCCTCTTGACGTCTCAATTTCCAAATGACCAAGCT AATCACAAAAGGCTGAGAGAATGGATTTCCCATCCTTTTTTGTTTTGTTCGTTTTCCGCTTTTCC CTGATGACATAATTCGGAGCGCTCGAATTTCTGCCGCCTGACTTT Found at i:18366394 original size:8 final size:8 Alignment explanation
Indices: 18366381--18366396 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 18366371 TGTGCTACTG 18366381 CCATTTAA 1 CCATTTAA 18366389 CCATTTAA 1 CCATTTAA 18366397 AGTCATTAAC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.25, G:0.00, T:0.38 Consensus pattern (8 bp): CCATTTAA Left flanking sequence: Indices 18365881 -- 18366380 GGCCTATATTTCCACAGGCCTAATATAAATATTTGAAATATTTTCAATTTTTTGCAATGTATGGT ATTCGCCATAATTTCGTCCAATCGATAGATTTAGTTAGTTGAGTTTAGTTTAGTTAGTTTAGTTT ATATGGATCTAAAAATCTCAAACTGAAGTATTTTCCCCTCTTATGTGTCATAAAACTCCTTGTTA CTAATTAATTTTAGTTTCATAATTAATCGCTCAGTCATGCATCATAAGCATCTTGTACATACTTT GAGCACAATAAACTTTCACACAAATATTCCTAAAATTGAGTAGTAAGCCAAATGCACAATAATAC GTATTTATGTAACTAATCTCATTAACACTTGAGTTAATTTTCCATCTATTGTGGGATTATTCTAA TGAGGCCTACTGTTCAGCCGAAGCCTTTAATCAAATTTTCAAATTTTCAAACAAATGACAAAAGA GGACGACGCGCAAATGTTCAAATTTTGTGCTACTTTGTGCTACTG Right flanking sequence: Indices 18366397 -- 18366896 AGTCATTAACTGTCATTGTGGAAATGTAACTGAAGCTGAAACAGAGCACAATGCTGGCTCTGACA AACATTAGCTAAAATGCAATTTTCACAGCGCAAAGTGGGCAAGAAAGGCAGATTGTTTCAAGTTG GATGCAGACAGCACCTGTTTGCATTTTTCTCTTCGTTTTTTTTTTTTTTTTTTTTTTTTGTGCGC CACAGCAGCTGACACTTTTCCTGCTATTTGGCCCCAGGTAACAGAGAAGAGAAAAACTTTTTCCC TGCCATTGTTGTGGCTGTTAAATCCAACCCGTAAGTAGCCCAAAAACTTCGATCTAATCCGGGCA AGAAGCCCTGAGGCCCTCTTGACGTCTCAATTTCCAAATGACCAAGCTAATCACAAAAGGCTGAG AGAATGGATTTCCCATCCTTTTTTGTTTTGTTCGTTTTCCGCTTTTCCCTGATGACATAATTCGG AGCGCTCGAATTTCTGCCGCCTGACTTTACACACTCTGACATAAT Found at i:18369064 original size:9 final size:10 Alignment explanation
Indices: 18369045--18369064 Score: 33 Period size: 9 Copynumber: 2.1 Consensus size: 10 18369035 TTAATCCTTA 18369045 AAATATATTC 1 AAATATATTC 18369055 AAAT-TATTC 1 AAATATATTC 18369064 A 1 A 18369065 TTTTCCTCAG Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 9 6 0.60 10 4 0.40 ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40 Consensus pattern (10 bp): AAATATATTC Left flanking sequence: Indices 18368545 -- 18369044 GAAATGAAATTTGGCGACAAACGTTTTCCGCTCGAAATCAACGTAAATGAGCAGGACTATGGAGC ACCTTCGGGTCCGGGAATCTGCGGGTTCTGCCAGGTATGAATTCCCAGCAATCCCCTTGTATTCG GTTGAAATATGTAATTCGGTTTACTTCACAACTGCCAGCAACTTTTCATTTTCCCATTGCAAACG TGTTCGCCGTGCTGGCAATGGAAATCTGCAGTCAGTTCTGGGAATCGGAAACGGAAACGGGCTGG AAGACATGACAACAAGTTTTTGGCAGAGCGAACATCAACAAATGTCCTGCAATTAATTATCTTCT AAATGTCTGCACAGTCGAGATGAATATTAAATGGGAGAATCTGGGGCAAGTTTAGGTAATAGGAA AATTGTAAAACTGCCGGAACCTTAACTTTTTGTCAGATCAAAAATTCAGTATTTTCTGATGCTTC GATTAAAATAGATTTTAACTTACTAAACCGCTGGCTTAATCCTTA Right flanking sequence: Indices 18369065 -- 18369564 TTTTCCTCAGATATTAAAAAAGCGGAATGTATTCAATATTGACAAGTTTTTTTCCCATCTTGTTC GATGCGTTTTAAAGAACTGCATTCAACTGGGCGTCGAATGTGCAGCAATATTTACACATTCAAAG ATAGCATAATAACCGCATGAACAACTCATGCAGCCAATATTAAAATGCATTTTTAATGCACTTTT GCACTTTGTGGTTGCCACTCCCCCAGAAAGCTGCAAGTTGACTTTGCTTTAATTAAAAAAAAAAG TGGTAAACAGAAAAGGAAGCAAGCGAAAGGGTTTTGTAAGTGCAAACAACACGCATACGCACTGT AAGCCGGCTGACGAATTACTCACAGCCATTTATCAGGCTGTTGAATGCCCAATGTTCAATACTCG CCGGTGCTGTCAGCAAAAGCAACAGCATAATTGCAATTTAATGCACTTTTATTGGTATTCAATGG GCTGCGAAAGGGGGAAGCATCAACGTCATTAATTAAAAACACTGC Found at i:18369264 original size:8 final size:8 Alignment explanation
Indices: 18369251--18369266 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 18369241 GCATTTTTAA 18369251 TGCACTTT 1 TGCACTTT 18369259 TGCACTTT 1 TGCACTTT 18369267 GTGGTTGCCA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.12, C:0.25, G:0.12, T:0.50 Consensus pattern (8 bp): TGCACTTT Left flanking sequence: Indices 18368751 -- 18369250 CTGGCAATGGAAATCTGCAGTCAGTTCTGGGAATCGGAAACGGAAACGGGCTGGAAGACATGACA ACAAGTTTTTGGCAGAGCGAACATCAACAAATGTCCTGCAATTAATTATCTTCTAAATGTCTGCA CAGTCGAGATGAATATTAAATGGGAGAATCTGGGGCAAGTTTAGGTAATAGGAAAATTGTAAAAC TGCCGGAACCTTAACTTTTTGTCAGATCAAAAATTCAGTATTTTCTGATGCTTCGATTAAAATAG ATTTTAACTTACTAAACCGCTGGCTTAATCCTTAAAATATATTCAAATTATTCATTTTCCTCAGA TATTAAAAAAGCGGAATGTATTCAATATTGACAAGTTTTTTTCCCATCTTGTTCGATGCGTTTTA AAGAACTGCATTCAACTGGGCGTCGAATGTGCAGCAATATTTACACATTCAAAGATAGCATAATA ACCGCATGAACAACTCATGCAGCCAATATTAAAATGCATTTTTAA Right flanking sequence: Indices 18369267 -- 18369766 GTGGTTGCCACTCCCCCAGAAAGCTGCAAGTTGACTTTGCTTTAATTAAAAAAAAAAGTGGTAAA CAGAAAAGGAAGCAAGCGAAAGGGTTTTGTAAGTGCAAACAACACGCATACGCACTGTAAGCCGG CTGACGAATTACTCACAGCCATTTATCAGGCTGTTGAATGCCCAATGTTCAATACTCGCCGGTGC TGTCAGCAAAAGCAACAGCATAATTGCAATTTAATGCACTTTTATTGGTATTCAATGGGCTGCGA AAGGGGGAAGCATCAACGTCATTAATTAAAAACACTGCCTCGCAGGCGGTGTTAAAAAAATAAAC TTTATTCCCCTGGTAGTTATCACTCGGCCGTTCAACTAAAACAGGAAAGGCATACGTATGCAGTT GGTAAATGGCCTTGAGCCATGTCAAACAAAATCATACAATTTATTAAAACGGCAAAGCTTTTAAT TAGAGAGCTACCTGGTACATCCTGTGTGCCCATCCATCCCCCCAC Found at i:18370003 original size:9 final size:9 Alignment explanation
Indices: 18369981--18370005 Score: 36 Period size: 9 Copynumber: 2.8 Consensus size: 9 18369971 TTCTGCTCCG * 18369981 GCTTTTGCT 1 GCTGTTGCT * 18369990 GCTGTTGTT 1 GCTGTTGCT 18369999 GCTGTTG 1 GCTGTTG 18370006 ATATCCCCGG Statistics Matches: 14, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 9 14 1.00 ACGTcount: A:0.00, C:0.16, G:0.32, T:0.52 Consensus pattern (9 bp): GCTGTTGCT Left flanking sequence: Indices 18369481 -- 18369980 ATAATTGCAATTTAATGCACTTTTATTGGTATTCAATGGGCTGCGAAAGGGGGAAGCATCAACGT CATTAATTAAAAACACTGCCTCGCAGGCGGTGTTAAAAAAATAAACTTTATTCCCCTGGTAGTTA TCACTCGGCCGTTCAACTAAAACAGGAAAGGCATACGTATGCAGTTGGTAAATGGCCTTGAGCCA TGTCAAACAAAATCATACAATTTATTAAAACGGCAAAGCTTTTAATTAGAGAGCTACCTGGTACA TCCTGTGTGCCCATCCATCCCCCCACCGACCCTCCTGAATTAAAAAGTTATTCCATCATAATAAA TCTTTGGCTTGCGCTGGGTTTGCATAATTAGCCAGCAACTCGGACAACTTAAACTCCCACCTCTG CAGACGTTTCCCGGCCATGTCATAATTATGCAAACAGTGTGAAACTGAAACTGAAGCTGAAGCCC AAGGAGAAAAAGTTAACTAAACAAACCTTGCCTCATTCTGCTCCG Right flanking sequence: Indices 18370006 -- 18370505 ATATCCCCGGCTCAACTTTCACAACATAATTCGTTATTTATGACTTCAATTATGTTTGCCTGTGG CCACACACAAAAAACCCAAAGGTTAAATGGGCGCAGCGAGGCAAAACTTAACCCCGGCTGAAGGC ATCACACTTTAACCCCCGGTTGGCCCCTGGGCATCCTACACATTTGTCGTCACCTCACTTTTCTG GCGAATGAGTGACCCCCCCGGGAGAAAATGCAAACGGCAGGAAGATAACATTTTAATTACCGCTC TAACGAAAGGTTCCACCTCCTTGAATATTCTTGTGATAAATTATCCTAGTAAAATATCCAAGGTG TTTTCCGGGGAGACGTGGGAACTTTGGTAAAGAGGTGTGGCAAAACTTGAATTGGTTGAATAATT GTATAAAATTTAAATACAACGCCCTAATTATTTATATTTTTAAGAAATATGAATACTGAGCGGCA AACAATTTGTTTCATAATTATTATGATAACATTTTTCCTTAATTT Found at i:18370989 original size:7 final size:7 Alignment explanation
Indices: 18370977--18370993 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 18370967 TGGACAACTT 18370977 AGCTCTC 1 AGCTCTC 18370984 AGCTCTC 1 AGCTCTC 18370991 AGC 1 AGC 18370994 CTTGGAGCTC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.18, C:0.41, G:0.18, T:0.24 Consensus pattern (7 bp): AGCTCTC Left flanking sequence: Indices 18370477 -- 18370976 ATTATTATGATAACATTTTTCCTTAATTTTTCGAACGCTGTTGAAGATGTGTGTGGGTGTTTTAT TTGGTTAGATAATGTCAACACAGTTTATGAATTATAAATGCCTGTGGCATATAAATCATACCGCC GGTACAGCCAGTCTGTCAAAGCGCATTAATAACAAATTGGCCCTGCATTAAAAATATATAATATT TTTTTATTACAATATTTTCACAGTTAATATGGAAATATTATTAATAAACTTTAATTACCAAAAGA TGACATTTTCTGCCCGTCTGTCATTTAAAATTTATATGGTCGGCGCAGATAAAAAATGGATTTAA TAAATGATTTCCCGTGTCGAAAATAAAACGATTGTGAAAATTAAAGGCAGGTGCTATATCGACAG TTGATGAAAAAGCATGGGAGCCACAGTGGCTAACCTTGGATGGAGACAACTTAACAAGCCACCTC TTCTAATGCCGACCGACTGCATTGCCACTGCAACTTGGACAACTT Right flanking sequence: Indices 18370994 -- 18371493 CTTGGAGCTCGATTTTGTTGGTCTGGGAAAACATGTTTCCCACTTAGCGCTGGCACATTTGCATG TGAATGAAAAGCGAGTCATGGACGCCGACAAATGTTGCATTCGGCTGGTGTTGTTGATTTTGTAT TTTGTGAAAAGCGCTTAGTTGCCAAACTGTTTTCAAAGTCTCTTCAAGTGGGCAAACACAAATGC ACACAGGGCAATTAAATTAAAGACGAAAGGTAAACAGACGGCAAGGCAAAAAGTTGATCTTGCCA AAGTTCAGACAAAGTTTGTTTTAGCTGGAAACTCAGCACTCAGCTATTGTCAGCATATTATTTTA TGCTTTAATTAGCAGAGCATTTCAAACGTGCCAAAAATTCTATTCCGCCAATTTTGGGTCAGCTG AGAAAGACTGAGTCATACTTTATGGCCATATCCGTTCAGCAGATCAGTGCTAAAAATCAAAAACA GACAACAGAAACACTTTTTTTGTACTTCAACTGTGATAGCTTTAA Found at i:18371127 original size:7 final size:7 Alignment explanation
Indices: 18371115--18371128 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 18371105 GGTGTTGTTG 18371115 ATTTTGT 1 ATTTTGT 18371122 ATTTTGT 1 ATTTTGT 18371129 GAAAAGCGCT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.00, G:0.14, T:0.71 Consensus pattern (7 bp): ATTTTGT Left flanking sequence: Indices 18370615 -- 18371114 CAGTCTGTCAAAGCGCATTAATAACAAATTGGCCCTGCATTAAAAATATATAATATTTTTTTATT ACAATATTTTCACAGTTAATATGGAAATATTATTAATAAACTTTAATTACCAAAAGATGACATTT TCTGCCCGTCTGTCATTTAAAATTTATATGGTCGGCGCAGATAAAAAATGGATTTAATAAATGAT TTCCCGTGTCGAAAATAAAACGATTGTGAAAATTAAAGGCAGGTGCTATATCGACAGTTGATGAA AAAGCATGGGAGCCACAGTGGCTAACCTTGGATGGAGACAACTTAACAAGCCACCTCTTCTAATG CCGACCGACTGCATTGCCACTGCAACTTGGACAACTTAGCTCTCAGCTCTCAGCCTTGGAGCTCG ATTTTGTTGGTCTGGGAAAACATGTTTCCCACTTAGCGCTGGCACATTTGCATGTGAATGAAAAG CGAGTCATGGACGCCGACAAATGTTGCATTCGGCTGGTGTTGTTG Right flanking sequence: Indices 18371129 -- 18371628 GAAAAGCGCTTAGTTGCCAAACTGTTTTCAAAGTCTCTTCAAGTGGGCAAACACAAATGCACACA GGGCAATTAAATTAAAGACGAAAGGTAAACAGACGGCAAGGCAAAAAGTTGATCTTGCCAAAGTT CAGACAAAGTTTGTTTTAGCTGGAAACTCAGCACTCAGCTATTGTCAGCATATTATTTTATGCTT TAATTAGCAGAGCATTTCAAACGTGCCAAAAATTCTATTCCGCCAATTTTGGGTCAGCTGAGAAA GACTGAGTCATACTTTATGGCCATATCCGTTCAGCAGATCAGTGCTAAAAATCAAAAACAGACAA CAGAAACACTTTTTTTGTACTTCAACTGTGATAGCTTTAAGCTGAAAGCGGGTTCAAAGACACAC ATGGCCCAGTCAACCGTTAAAACATAACTGTTAAGTTGTTACTCATGACCAAGCAATTTCTTTTA TGTGCTCTTGCGCAAATTAATGAAAAGAAATTGCGAATATAAATA Found at i:18371296 original size:7 final size:7 Alignment explanation
Indices: 18371284--18371297 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 18371274 TTAGCTGGAA 18371284 ACTCAGC 1 ACTCAGC 18371291 ACTCAGC 1 ACTCAGC 18371298 TATTGTCAGC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.43, G:0.14, T:0.14 Consensus pattern (7 bp): ACTCAGC Left flanking sequence: Indices 18370784 -- 18371283 GATAAAAAATGGATTTAATAAATGATTTCCCGTGTCGAAAATAAAACGATTGTGAAAATTAAAGG CAGGTGCTATATCGACAGTTGATGAAAAAGCATGGGAGCCACAGTGGCTAACCTTGGATGGAGAC AACTTAACAAGCCACCTCTTCTAATGCCGACCGACTGCATTGCCACTGCAACTTGGACAACTTAG CTCTCAGCTCTCAGCCTTGGAGCTCGATTTTGTTGGTCTGGGAAAACATGTTTCCCACTTAGCGC TGGCACATTTGCATGTGAATGAAAAGCGAGTCATGGACGCCGACAAATGTTGCATTCGGCTGGTG TTGTTGATTTTGTATTTTGTGAAAAGCGCTTAGTTGCCAAACTGTTTTCAAAGTCTCTTCAAGTG GGCAAACACAAATGCACACAGGGCAATTAAATTAAAGACGAAAGGTAAACAGACGGCAAGGCAAA AAGTTGATCTTGCCAAAGTTCAGACAAAGTTTGTTTTAGCTGGAA Right flanking sequence: Indices 18371298 -- 18371797 TATTGTCAGCATATTATTTTATGCTTTAATTAGCAGAGCATTTCAAACGTGCCAAAAATTCTATT CCGCCAATTTTGGGTCAGCTGAGAAAGACTGAGTCATACTTTATGGCCATATCCGTTCAGCAGAT CAGTGCTAAAAATCAAAAACAGACAACAGAAACACTTTTTTTGTACTTCAACTGTGATAGCTTTA AGCTGAAAGCGGGTTCAAAGACACACATGGCCCAGTCAACCGTTAAAACATAACTGTTAAGTTGT TACTCATGACCAAGCAATTTCTTTTATGTGCTCTTGCGCAAATTAATGAAAAGAAATTGCGAATA TAAATAATAACATATTTAGCATATAAATTAGTTTTGCATATTAATTATGCAATTTAACTGGGACG CGCATATGGAATTCCGTGGCGCGAAGAAAAGGTCGAACATAAAACCAAAACTGTCGCATTAAATT TGACCCCGTTAATTGTGCTGGTAATCAGGAGATGGGTGGGGAGGT Found at i:18373284 original size:8 final size:8 Alignment explanation
Indices: 18373271--18373293 Score: 39 Period size: 8 Copynumber: 2.9 Consensus size: 8 18373261 AATGGATCAT * 18373271 TACATTGG 1 TACATTAG 18373279 TACATTAG 1 TACATTAG 18373287 TACATTA 1 TACATTA 18373294 CATTCAAATG Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 8 14 1.00 ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39 Consensus pattern (8 bp): TACATTAG Left flanking sequence: Indices 18372771 -- 18373270 TGGCGTCCTTCCAGCCTTTATTCATAAAAAAATAGGCAGCAACAATTTCGAGACAGTTTTTTTTT TTGCATATATATTAATAACTGTCATTTGGGTGGGACACTGTCATTTTCTCATCCTCCATACCTCC ACACACACATACAATTTCTTTGATATATTTCCTTAAGTTAAGCAATTCATATGTCTCTTAAGGTT TCCCATCCTTGGTTTTTTCTGTCCCCCCGCCATTTCTTTTTCCTTCGGCTCGGTTTAGGTGTGGT TGCAACTTTTGGCGCGTGTATATGAAAATTATGTTAATTTATACTCCGCTTGGTTGCGGATCCTG CTGTTTCCCTCGTTCTCTGGAAGGTTTGATGGCTGCTTCCCCTTGGGGCATCTGTTTGGGCTAAC ATAATGTACTCCAGGGTGTCTGCAGGGTGTGTCCGACTTCTGGTTAGCTTTGACCAATTTAAATT TAATATTCGATTTGCTTCAGCTTTTAAAGAGAAAAAATGGATCAT Right flanking sequence: Indices 18373294 -- 18373793 CATTCAAATGGACTAATAACTTTCAAATTGTACGCTACTATTTACAGTACTGGGTAGTAAAATGC TCTCAACTCCTGTCACGCTTTTCCAGCCACGTCTGTTGCTTGCGTGTGCGTTTTTCTGAATTAAA TTAGGCAACCTTCGTCTGGTCGGGAATATGTTATTTCAGTCTTCTCCAGTTTGGCAGACGCTGTC ATCGTCACAATTTGTATAAGCTTCTTAAAGGGTTAAGGCCAGAAAGCGAGTTGCACAAGCAGACG GTCGCATATTAATTTGGCCAGTAACATGTTGCGTTGTACGTTAGAGAATTATATAAATTGCTGGC TGCAATTTTGAGACCGTATTGTTGAATTTATGAGAAATATTGACCGCAATATTTATCACATGTCT AGTGCCAAGTCTAACACTCCTCTCTCTTTGTCGGCCTAATCGTACGTGTAGATTATATTGTACAA TCATCCAGACTTAGCATAAATTTCCAGCTAGAGAACTGGGCAAAC Found at i:18375133 original size:8 final size:8 Alignment explanation
Indices: 18375120--18375140 Score: 35 Period size: 8 Copynumber: 2.6 Consensus size: 8 18375110 TAGGTACTAT 18375120 TTAAATAC 1 TTAAATAC * 18375128 TTAAATAT 1 TTAAATAC 18375136 TTAAA 1 TTAAA 18375141 GGTTAATGCC Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 12 1.00 ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43 Consensus pattern (8 bp): TTAAATAC Left flanking sequence: Indices 18374620 -- 18375119 TAAGATCAACCATTATCACGAGCCCACCTATAGCCATTTGAGTTCGTATCTGGTATCCTTGCGGA CACGCAAATATATTCACACTCCTGGAGATAATCACTTCTGCACCGGAGTTATCCTAACCAACCGC CATGTGCTTACTTCAGCACACTGCATTACAGAGTGGGTATATCATATAATTCTAGTTCATTACCT ATTTTCGAATCTATAATTAGTAAAAACGGTGTGATGATGAGCCCTAAACGAATTGTGGTGGCACT TTGCGCATCTCTTTTTAAAACCCCAGAGTCAGAGGAATTTGTTGTTGACATTCATAATATGATTA TCCACCCGTACTACCATAGAAACCAACACAATGATATAGCCATTATAAAGCTGAAAAGATATGTG AAGTTGGACGGCCATCATTTGGCTCCAGTTGTTCTTGGCAATTCCTCGCTGGAGGTGGGAAACGA TTGCAAGACCATTGGTGGAATCTTCGGGGTACGAGTAGGTACTAT Right flanking sequence: Indices 18375141 -- 18375640 GGTTAATGCCACAGAAACCCTATCCCTTAGAGGCAAAGATTTGGGTCATTTCATAGCATGTTGCT TGTGAATGTCGAACTGCGGCCATTCGACGAATGTCTGAAGGTGAAGAAGAGTCTAATGGCTGCTA GACCCGAAAACGAGGACCTCATATGTGTAAAGTCCACGGAGAAACAGATGTGTACCACAGATTTC GGTGGTCCACTTTTTTGCGATGGTCAGCTGTATGGAATAGCTCTGGGCTCCATCAATTGCTCCAG TCCAGATCCAGTTTTCTTTAGTGATGTATCGTTCTACAACAGCTGGGTGACCAAAATTATATCGG AGGCAGTGGACCATACCAGACCATTTATCGCAGACAGATTTTCCTTATTTTCCTTCATCATTTTA ATGCTCAGCATTGTCTGAAATTAGGACAACGAATCATAACTCTCTCTTGTGAAAGGAAAAATTGA CCGGCCCCTGCGATCCATGGAAAATTGGGGAAAGCCCTAGAAAAC Found at i:18375517 original size:9 final size:9 Alignment explanation
Indices: 18375503--18375520 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 18375493 TCGCAGACAG 18375503 ATTTTCCTT 1 ATTTTCCTT 18375512 ATTTTCCTT 1 ATTTTCCTT 18375521 CATCATTTTA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.11, C:0.22, G:0.00, T:0.67 Consensus pattern (9 bp): ATTTTCCTT Left flanking sequence: Indices 18375003 -- 18375502 ATATGTGAAGTTGGACGGCCATCATTTGGCTCCAGTTGTTCTTGGCAATTCCTCGCTGGAGGTGG GAAACGATTGCAAGACCATTGGTGGAATCTTCGGGGTACGAGTAGGTACTATTTAAATACTTAAA TATTTAAAGGTTAATGCCACAGAAACCCTATCCCTTAGAGGCAAAGATTTGGGTCATTTCATAGC ATGTTGCTTGTGAATGTCGAACTGCGGCCATTCGACGAATGTCTGAAGGTGAAGAAGAGTCTAAT GGCTGCTAGACCCGAAAACGAGGACCTCATATGTGTAAAGTCCACGGAGAAACAGATGTGTACCA CAGATTTCGGTGGTCCACTTTTTTGCGATGGTCAGCTGTATGGAATAGCTCTGGGCTCCATCAAT TGCTCCAGTCCAGATCCAGTTTTCTTTAGTGATGTATCGTTCTACAACAGCTGGGTGACCAAAAT TATATCGGAGGCAGTGGACCATACCAGACCATTTATCGCAGACAG Right flanking sequence: Indices 18375521 -- 18376020 CATCATTTTAATGCTCAGCATTGTCTGAAATTAGGACAACGAATCATAACTCTCTCTTGTGAAAG GAAAAATTGACCGGCCCCTGCGATCCATGGAAAATTGGGGAAAGCCCTAGAAAACTTTCGCCTGT ACTCGTATTGCACCTGTGTGCCACGTGTGGCACATTCACTTTACCCCCAGAAAAACCGCACTGAC TTTCCTTCTATTGTACACCAACAGCCATATTTTCGATTATTGTTCAACGCTTTTACACTTTTGCA TTAATCAAGAAGAAAAGGAAACTGCCGAAAAACTAAATAAATTTGTACATAAAACATGATTGATA AGGCCATAAATAATCCCAATAATAAATAGAAAATTGGTCAAGAAAAAAGTAAAAGGCCGCGACAC GGCAATTTGATGTAACAACCAATCATTATTAATAGCCACGAAACGCCGGATAAAAACCGAACCGT TAAGGTTACAAGAAATTGCGCACACACGCGATACTATTGGCCAAA Found at i:18377889 original size:9 final size:9 Alignment explanation
Indices: 18377869--18377891 Score: 32 Period size: 9 Copynumber: 2.6 Consensus size: 9 18377859 GGAGTCACAT * * 18377869 AAAAATATC 1 AAAAACAGC 18377878 AAAAACAGC 1 AAAAACAGC 18377887 AAAAA 1 AAAAA 18377892 GGAGCCTGCA Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.74, C:0.13, G:0.04, T:0.09 Consensus pattern (9 bp): AAAAACAGC Left flanking sequence: Indices 18377369 -- 18377868 CATGCATGCAGCTCGTAATGAAATAAAAATCTTGAGAAGAGAATGTTTTGGTGTCGCAAAATAAT AAGAAAAATTCAAAGCAACTCTCATATAGTGTATATAGTTGCCCAATAAAATTCGCAATTTGTAT ACTATTGCTGTGTTATCACGCGCTCATCTCTGTTCAATGCAACGTCTCAAGTTCTGGCGTTTGTT TTCATAGCCGTGAATGTGACATTGTCCAACTTCAACTACCACGTTTCCCCACACTTTTTTTAGTT CGTTTTTTTTTTTTTTTTTTTTTGAAACTCGAGCCACAGTTTGTTGCAATTCCCGTTTTTATTTG TGGGAGAAAGTGTGAAACCGATTTTGCTGACTCCGGACTCTGGAAATTCAAGCTGCAGCAAAACT TCTCGGCGGCAATTCATGCAGCCCTTTTGAGAACCCTAAGTGGTTTTATAGGGTCTACGAATTCC AGTGTGAAAAAAGAAACAGAAACAAAAAGAGCGCGGGAGTCACAT Right flanking sequence: Indices 18377892 -- 18378391 GGAGCCTGCAAGCGAAGCAGACAAAAAATTCCACTCGCAACTCAATTGTCAAAAGTTAAGCGACA TCTCATGGGGCGGTCGAAAAGTTTCGAATTACATGGCCAGCTGGCTGACCCGATTTTTAAAGTCG AATGCAAATGCTGTTGATTTTCCGCACGTTTCCGGCTGACCAAACAAAACTTCACTCACTCAGCC AGCCAGTCAGTCAGTCAATCCGTCATCCAAAAGCCAAAATGGGCAATGCGATGGAGCGGAGAAAT CAATTCATTTTTGGCCAGCTGCAGTATTGAGGTTCCCCTCTTAGCTTCCCCTTTTTTTCACCTCA CGTTCCCATCAGTTTTAAGTTTGCAGCTGTTTTCGATGCCCCACCTCTCATATTTCTGCCACAAT TTGCAATTTTGCGGCTTTCATTTACAGAAATTAGTCGGTGATTTCCGAAATCGCAGCCTGTCGAT ACATACCAAGTTATTCTTAAAATGTTAAGTATTTGGTTAAATTTC Found at i:18381629 original size:7 final size:8 Alignment explanation
Indices: 18381614--18381635 Score: 30 Period size: 7 Copynumber: 3.0 Consensus size: 8 18381604 AATGATTAAA 18381614 TGTGAAAT 1 TGTGAAAT 18381622 TGTG-AAT 1 TGTGAAAT 18381629 TG-GAAAT 1 TGTGAAAT 18381636 ACGTATCCAG Statistics Matches: 13, Mismatches: 0, Indels: 3 0.81 0.00 0.19 Matches are distributed among these distances: 6 1 0.08 7 8 0.62 8 4 0.31 ACGTcount: A:0.36, C:0.00, G:0.27, T:0.36 Consensus pattern (8 bp): TGTGAAAT Left flanking sequence: Indices 18381114 -- 18381613 GTACTCTTTGGGTTTTTGGGTCGGCAATGGGCCTGGCTCTTCTGCCACAAGCCGTTGTTAACTTT CGACACATTGTGCGGCTTTTAAATTTTAATTAGCGTTAACATAGCAGAAGGAGCAGCTGAACGGT CGGAAGAACGCAGCAGCCCTAAAAAATTCATCTAATTAAAAAAATTTCACTTGACTCTTCCGGTG AAGTTTTTGTGGAAATTTTTCTTTGCAAAGAATGGGGCACGGGCCACAAATTCAAATGTGGAACA CATGATTTAGAAAAGCAAAGAATAACTGTGGCTTTTCAAAAAGATACAAAAAGAAATTGGTTTAA TTTGAAAAGGTAGTTGAAAGGTTAGTAAAAGATGACATTAGTTAGGAGACAAGGTTAGAATGAAA ATAAAAAAAATTTATGAATTTTATTTGAAGTGGTCAATAATCTTGTACTTAAGTATGGTCCACTT AATTTTAATAAATATTTTGTCGCCTCTTAACATGTAATGATTAAA Right flanking sequence: Indices 18381636 -- 18382135 ACGTATCCAGCTGAAACGAAATAATGTACTGAACTCAACAAAAATAAATTACTTAATCGTATACC TAAGTTTAACAAAACAATTGTACAACTCTCTGAGAAAAAGTGTCTACAAATGACAACAACAAGAA GAGCTAACATTGAAAACAAAAATTGGTCACTAAAACATGCCAAGAAAAATTCCAAATTATGTGTA ATAACGTGTTTTTGGCTTCCTATGTAAAGACATATATAAAGATAAAGTGTATTTCTCTGTTTCTT AATGCTTTCCGTACTTCTTGCCTGATAAGCTTTTTGGTAAATGGACTAACCTGGACTTTAATATG GAATTTTGGTATCTTCGAGATCGAAATCTTATCGCTCTGTCTCTACTTCCTCTGCCTTCCCTTTC TCTCTCTCTCTCTCTGCACACAAAGCTAAATGTTAGTTCTTGTTGTTGTCGTTTTTACAGGCGCC ACTCTAAACACGGACATCGGTCCCGATTCCGAGGCCCAAATCCAC Found at i:18382382 original size:9 final size:9 Alignment explanation
Indices: 18382368--18382397 Score: 46 Period size: 9 Copynumber: 3.3 Consensus size: 9 18382358 CCAAATACTT * 18382368 CCGTTTAAG 1 CCGTTTAGG 18382377 CCGTTTAGG 1 CCGTTTAGG * 18382386 CCATTTAGG 1 CCGTTTAGG 18382395 CCG 1 CCG 18382398 CCTTCGCCAC Statistics Matches: 18, Mismatches: 3, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 9 18 1.00 ACGTcount: A:0.17, C:0.27, G:0.27, T:0.30 Consensus pattern (9 bp): CCGTTTAGG Left flanking sequence: Indices 18381868 -- 18382367 AAAGATAAAGTGTATTTCTCTGTTTCTTAATGCTTTCCGTACTTCTTGCCTGATAAGCTTTTTGG TAAATGGACTAACCTGGACTTTAATATGGAATTTTGGTATCTTCGAGATCGAAATCTTATCGCTC TGTCTCTACTTCCTCTGCCTTCCCTTTCTCTCTCTCTCTCTCTGCACACAAAGCTAAATGTTAGT TCTTGTTGTTGTCGTTTTTACAGGCGCCACTCTAAACACGGACATCGGTCCCGATTCCGAGGCCC AAATCCACCCGGAATTCAATGACGACGAGGAGCTGGATGGTCGCGATAATGGCGATGAGCATATC GATACCACCCAGCAGTCGGAGGAGGCCACGCCCCCCGTAACCGATAAATTGGAGGCGCAAAAGAA GGCGGATCTGAAGAAGAGTGCGGCAGCCACAGCGGCAGCGGTTATTGCCGCTGGAAATGGCAGCC AGCACAATTTAAATGGCATCGAGGCTCCCAAGCCGCCAAATACTT Right flanking sequence: Indices 18382398 -- 18382897 CCTTCGCCACTCCCAATAAAGGGGCGTGGCTCTTGGCCAGTTAGCTGTGTGCCCCATTTGCTGAA AGCAGAAGGGATAAGAAACAAAATCGAATAATATATATCCTTACCACACTTTGCTCTCAAATAGT TGCTCTCTCAAAAAAGTTACACAAATCTCAAAAGGCGCACAACAAAAAGTTATCTATAATTTTAT TATAAACGAAACAAATGCAACAATTTACCTTAGGCCAAGTAATTTTAAGTGACCAATTTTCGCGA AATCGCGATTCTCTCAAACCCTTGAATTTCCCTTTGTCCACTCGAAAATAACTAAAACAAAACTC TAATAATATACAAATTACGAATAATAAAACAACAATGTCCCATTTATTGTAATATATTTTGTCCA GCAATATTGATGTTCATCCATGTATTTATTTAAGCTATAAGAGCTGCCAGCATTTTGCATTTTGC GTTTTCTAATTTTTATTTTTTGTCGATTGGCAATTTCAATCAATT Found at i:18382847 original size:7 final size:7 Alignment explanation
Indices: 18382837--18382857 Score: 35 Period size: 7 Copynumber: 3.0 Consensus size: 7 18382827 AGAGCTGCCA 18382837 GCATTTT 1 GCATTTT 18382844 GCATTTT 1 GCATTTT * 18382851 GCGTTTT 1 GCATTTT 18382858 CTAATTTTTA Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 7 13 1.00 ACGTcount: A:0.10, C:0.14, G:0.19, T:0.57 Consensus pattern (7 bp): GCATTTT Left flanking sequence: Indices 18382337 -- 18382836 GGCATCGAGGCTCCCAAGCCGCCAAATACTTCCGTTTAAGCCGTTTAGGCCATTTAGGCCGCCTT CGCCACTCCCAATAAAGGGGCGTGGCTCTTGGCCAGTTAGCTGTGTGCCCCATTTGCTGAAAGCA GAAGGGATAAGAAACAAAATCGAATAATATATATCCTTACCACACTTTGCTCTCAAATAGTTGCT CTCTCAAAAAAGTTACACAAATCTCAAAAGGCGCACAACAAAAAGTTATCTATAATTTTATTATA AACGAAACAAATGCAACAATTTACCTTAGGCCAAGTAATTTTAAGTGACCAATTTTCGCGAAATC GCGATTCTCTCAAACCCTTGAATTTCCCTTTGTCCACTCGAAAATAACTAAAACAAAACTCTAAT AATATACAAATTACGAATAATAAAACAACAATGTCCCATTTATTGTAATATATTTTGTCCAGCAA TATTGATGTTCATCCATGTATTTATTTAAGCTATAAGAGCTGCCA Right flanking sequence: Indices 18382858 -- 18383357 CTAATTTTTATTTTTTGTCGATTGGCAATTTCAATCAATTCGAACGCGGCGAACAACGCAAATTA GAAAATTAAACATGCCTATGATTTATTTTAATTAGTTATCCGCTTCACACTTGTGTTTTTTTATG TTCTTTGGTAATTTTAGCAAGACGAAACAAATAAACGAAAACATGAAAAATACAAATTTGGTTTA TGATAAAGTTTGATGTGGCAGACAGTAAGCTGATGATGGTGTTGTCAGGTGGGATACCTTTTCCC GGATCATTAATCATGAAAACCATTATTATCACGCATGCATGTGACTCTGCAAGTATTGCAAATAT ACTTAAACGAATTTCTTAAATTTCTTCTCACAGGCAAATCAATCAAGACGCCCACAAACGAAACG TAAGTACAGTGAACTCTCTCATCAGTCTAACAAATGTCAAAATAAGTTCAGAAAAGTGCGATAAA ACAGACGGGGCCAGGCCATGCAATCATAAATTATTTCCACGGATC Found at i:18383400 original size:10 final size:9 Alignment explanation
Indices: 18383385--18383406 Score: 35 Period size: 10 Copynumber: 2.3 Consensus size: 9 18383375 CGGTATCTGG 18383385 TTTGCTTGAA 1 TTTGCTT-AA 18383395 TTTGCTTAA 1 TTTGCTTAA 18383404 TTT 1 TTT 18383407 TCAAAGCCAT Statistics Matches: 12, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 9 5 0.42 10 7 0.58 ACGTcount: A:0.18, C:0.09, G:0.14, T:0.59 Consensus pattern (9 bp): TTTGCTTAA Left flanking sequence: Indices 18382885 -- 18383384 ATTTCAATCAATTCGAACGCGGCGAACAACGCAAATTAGAAAATTAAACATGCCTATGATTTATT TTAATTAGTTATCCGCTTCACACTTGTGTTTTTTTATGTTCTTTGGTAATTTTAGCAAGACGAAA CAAATAAACGAAAACATGAAAAATACAAATTTGGTTTATGATAAAGTTTGATGTGGCAGACAGTA AGCTGATGATGGTGTTGTCAGGTGGGATACCTTTTCCCGGATCATTAATCATGAAAACCATTATT ATCACGCATGCATGTGACTCTGCAAGTATTGCAAATATACTTAAACGAATTTCTTAAATTTCTTC TCACAGGCAAATCAATCAAGACGCCCACAAACGAAACGTAAGTACAGTGAACTCTCTCATCAGTC TAACAAATGTCAAAATAAGTTCAGAAAAGTGCGATAAAACAGACGGGGCCAGGCCATGCAATCAT AAATTATTTCCACGGATCCACAACTAACCCGTCGACGGTATCTGG Right flanking sequence: Indices 18383407 -- 18383906 TCAAAGCCATTAATCTGTATCCATTAGTTTAATGTTGCGTAGCTCGGATGTGTGTTTGTTTGTCT ACTTGCATGTGTCTCTTGAGTGGCTTTAATTTTCGATCTTACATTAACCGTATGCCGCATAAGCA ATCATCTATATACTACAATATATACGTAGCGCAGCTCATTACCATTCTAGGTTAGTTCATAGTTC ATTTATAGTCTAAATTCAACTTAAAGTTAAGCACACGCATACACATAAGCACACTACTACACACC ACATTTGAAAAGTCCTACAAAATGAAATTCCAAATTCTAATTTCATAAAAGCAAAATCGGTTTAA AATGTCTCACGCTGTCACACACACACACACCATACACACATACATGTGATACACTTCTGAACTTT CACTATAAAACCCTCGCTAGTCGCTAGTCTGCCACGCCCACTGTGCTCGCCCGCCCACCAGAAAA AATAAACAAGAAGTGTCTGTCTCGCTCTGTCTCTCTCTTACCCTC Found at i:18383601 original size:7 final size:7 Alignment explanation
Indices: 18383589--18383603 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 18383579 CATTCTAGGT 18383589 TAGTTCA 1 TAGTTCA 18383596 TAGTTCA 1 TAGTTCA 18383603 T 1 T 18383604 TTATAGTCTA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.27, C:0.13, G:0.13, T:0.47 Consensus pattern (7 bp): TAGTTCA Left flanking sequence: Indices 18383089 -- 18383588 TGGTGTTGTCAGGTGGGATACCTTTTCCCGGATCATTAATCATGAAAACCATTATTATCACGCAT GCATGTGACTCTGCAAGTATTGCAAATATACTTAAACGAATTTCTTAAATTTCTTCTCACAGGCA AATCAATCAAGACGCCCACAAACGAAACGTAAGTACAGTGAACTCTCTCATCAGTCTAACAAATG TCAAAATAAGTTCAGAAAAGTGCGATAAAACAGACGGGGCCAGGCCATGCAATCATAAATTATTT CCACGGATCCACAACTAACCCGTCGACGGTATCTGGTTTGCTTGAATTTGCTTAATTTTCAAAGC CATTAATCTGTATCCATTAGTTTAATGTTGCGTAGCTCGGATGTGTGTTTGTTTGTCTACTTGCA TGTGTCTCTTGAGTGGCTTTAATTTTCGATCTTACATTAACCGTATGCCGCATAAGCAATCATCT ATATACTACAATATATACGTAGCGCAGCTCATTACCATTCTAGGT Right flanking sequence: Indices 18383604 -- 18384103 TTATAGTCTAAATTCAACTTAAAGTTAAGCACACGCATACACATAAGCACACTACTACACACCAC ATTTGAAAAGTCCTACAAAATGAAATTCCAAATTCTAATTTCATAAAAGCAAAATCGGTTTAAAA TGTCTCACGCTGTCACACACACACACACCATACACACATACATGTGATACACTTCTGAACTTTCA CTATAAAACCCTCGCTAGTCGCTAGTCTGCCACGCCCACTGTGCTCGCCCGCCCACCAGAAAAAA TAAACAAGAAGTGTCTGTCTCGCTCTGTCTCTCTCTTACCCTCTGAACATCATGAAGCTCTCTTG CTCTGTCTCACGCATTTACTAAAATGTCAAAAATGTCGCTGTCCCAGTCATTCAACCAAACAAAT GACAAAGAAAAAAGAAGCAAACAAATGCATTGAAAAAAAAAAAACAACTCTATAGTGTTAGAGCC ACTTTGCTAATGCATCACAAAAATAATAAATAACAAAAACAAAAA Found at