TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_2R assembled 2004-3-18 md5checksum:9f4c91a2cad3c68020b05fff1adf27ee Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 20766785 ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28 Warning! 200 characters in sequence are not A, C, G, or T Found at i: i:4332372 original size:7 final size:7 Alignment explanation
Indices: 4332356--4332381 Score: 38 Period size: 7 Copynumber: 3.7 Consensus size: 7 4332346 AGAATCCCAA * 4332356 GTCCTGC 1 GTCCTTC 4332363 GTCCTTC 1 GTCCTTC 4332370 GTCCTTC 1 GTCCTTC * 4332377 ATCCT 1 GTCCT 4332382 GGACCCCGTG Statistics Matches: 17, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 7 17 1.00 ACGTcount: A:0.04, C:0.42, G:0.15, T:0.38 Consensus pattern (7 bp): GTCCTTC Left flanking sequence: Indices 4331856 -- 4332355 GCATACCGCGTGCTAAGACTGTCTCCAGATATCCGAGCTATATTAGACTGACTAAAACAACATGG GTTGCTCGAACATAACAATATACATTTTCTCTTCGAAAGCATTATGCAGAACAAAAAAAGTGTAA ATGGGTTTTGGCCAGGCCCTTTTTAGCCGGGATAAGTGCGGATGCGGATTCGGATGCGGGTGTGG AAGTGGAAGTGGGTGTGGATGAGGATGAGGATAAGCCGGGCCCGTGAAGGTGGCGGTGGTGCAGA TGGAGATGGGCAAAGTGACGCCTGTCAACCGTTTGGCCATCGCACATGTGATATGATGGAGCGGG GATGCGCAGGATGTGGGGAAAAGGAGGGCTGGCACAGGGAAATGGACGTCGACTTTCGGCCTGAT GACGGTGCTTAAATAATAATTTTATACTCCAACAAAGCGCCGACTGTCGATGTTCGGCCCTTATC TGCTCTGCGGTTCGCTATCCTGTCCTGTCCTGTCCAGAATCCCAA Right flanking sequence: Indices 4332382 -- 4332881 GGACCCCGTGTTTGTGCCTTGTCATTCAGCCGCTGCTGGGCAGTCGGCAAATTGGAAAACAGAGC TGCTGGAAAATATGGAAAAATGCAAATGTCAATGGGTAAATGGTAAATGGGCTAGGCGGATGAAG CGGGAGCGGGAGTGGGTGGGTGGTGGCGCTTAGCCGCCTTCACGACTTTTAATTTTCATAATGAT TATGGCCCCTACAACGGTACATGTGGGTGGGGCCAGTTGCCCCTTTTTCCGGGTGGCAGATTTTC CGCTTCTTCCCCGCCATTTGGCCAGTAACGAAATCATTTTAGCACAACTGGCGCGTTAAAAATGC TTAAAATGTGAAACGCACGGCGACGGCGACGATGATGATGGAAATTTTTCGGGTAAACATATAAA AAACAAAGCGGCAAAAAAAAAAAGCATTCAGCCAGCGAAGAGGGTAGAGGGAAGAAAATTCGCAA AACGGCGTTAAAATGTAGGAAAATCCGCAAGGAAATGTGGACAGC Found at i:4332493 original size:7 final size:7 Alignment explanation
Indices: 4332481--4332496 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 4332471 AATGTCAATG 4332481 GGTAAAT 1 GGTAAAT 4332488 GGTAAAT 1 GGTAAAT 4332495 GG 1 GG 4332497 GCTAGGCGGA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.38, C:0.00, G:0.38, T:0.25 Consensus pattern (7 bp): GGTAAAT Left flanking sequence: Indices 4331981 -- 4332480 TGTAAATGGGTTTTGGCCAGGCCCTTTTTAGCCGGGATAAGTGCGGATGCGGATTCGGATGCGGG TGTGGAAGTGGAAGTGGGTGTGGATGAGGATGAGGATAAGCCGGGCCCGTGAAGGTGGCGGTGGT GCAGATGGAGATGGGCAAAGTGACGCCTGTCAACCGTTTGGCCATCGCACATGTGATATGATGGA GCGGGGATGCGCAGGATGTGGGGAAAAGGAGGGCTGGCACAGGGAAATGGACGTCGACTTTCGGC CTGATGACGGTGCTTAAATAATAATTTTATACTCCAACAAAGCGCCGACTGTCGATGTTCGGCCC TTATCTGCTCTGCGGTTCGCTATCCTGTCCTGTCCTGTCCAGAATCCCAAGTCCTGCGTCCTTCG TCCTTCATCCTGGACCCCGTGTTTGTGCCTTGTCATTCAGCCGCTGCTGGGCAGTCGGCAAATTG GAAAACAGAGCTGCTGGAAAATATGGAAAAATGCAAATGTCAATG Right flanking sequence: Indices 4332497 -- 4332996 GCTAGGCGGATGAAGCGGGAGCGGGAGTGGGTGGGTGGTGGCGCTTAGCCGCCTTCACGACTTTT AATTTTCATAATGATTATGGCCCCTACAACGGTACATGTGGGTGGGGCCAGTTGCCCCTTTTTCC GGGTGGCAGATTTTCCGCTTCTTCCCCGCCATTTGGCCAGTAACGAAATCATTTTAGCACAACTG GCGCGTTAAAAATGCTTAAAATGTGAAACGCACGGCGACGGCGACGATGATGATGGAAATTTTTC GGGTAAACATATAAAAAACAAAGCGGCAAAAAAAAAAAGCATTCAGCCAGCGAAGAGGGTAGAGG GAAGAAAATTCGCAAAACGGCGTTAAAATGTAGGAAAATCCGCAAGGAAATGTGGACAGCGGAAG GAAGCTGCATGATGAATTATGTTTATGACGCAATATGTTGCGGCAGGACTCCGGCCGGACCCCAA GCCATACTATTCCATGGCTTTCGGTGTTTCGGGGTTTACGAGAAT Found at i:4332822 original size:7 final size:7 Alignment explanation
Indices: 4332808--4332826 Score: 31 Period size: 7 Copynumber: 2.7 Consensus size: 7 4332798 TTCAGCCAGC 4332808 GAAGAGG 1 GAAGAGG * 4332815 GTAGAGG 1 GAAGAGG 4332822 GAAGA 1 GAAGA 4332827 AAATTCGCAA Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.42, C:0.00, G:0.53, T:0.05 Consensus pattern (7 bp): GAAGAGG Left flanking sequence: Indices 4332308 -- 4332807 ATCTGCTCTGCGGTTCGCTATCCTGTCCTGTCCTGTCCAGAATCCCAAGTCCTGCGTCCTTCGTC CTTCATCCTGGACCCCGTGTTTGTGCCTTGTCATTCAGCCGCTGCTGGGCAGTCGGCAAATTGGA AAACAGAGCTGCTGGAAAATATGGAAAAATGCAAATGTCAATGGGTAAATGGTAAATGGGCTAGG CGGATGAAGCGGGAGCGGGAGTGGGTGGGTGGTGGCGCTTAGCCGCCTTCACGACTTTTAATTTT CATAATGATTATGGCCCCTACAACGGTACATGTGGGTGGGGCCAGTTGCCCCTTTTTCCGGGTGG CAGATTTTCCGCTTCTTCCCCGCCATTTGGCCAGTAACGAAATCATTTTAGCACAACTGGCGCGT TAAAAATGCTTAAAATGTGAAACGCACGGCGACGGCGACGATGATGATGGAAATTTTTCGGGTAA ACATATAAAAAACAAAGCGGCAAAAAAAAAAAGCATTCAGCCAGC Right flanking sequence: Indices 4332827 -- 4333326 AAATTCGCAAAACGGCGTTAAAATGTAGGAAAATCCGCAAGGAAATGTGGACAGCGGAAGGAAGC TGCATGATGAATTATGTTTATGACGCAATATGTTGCGGCAGGACTCCGGCCGGACCCCAAGCCAT ACTATTCCATGGCTTTCGGTGTTTCGGGGTTTACGAGAATGGCCAGTTCCGCCCGGGTCTTGTAT CATTTGCAGGCTGTCAGGGGCGCGAGTGTGTGTGTGTGAGTATCTGTGGTGGGGACGCGTAAATG GCGGTTAATGTGGGCAGACGGCCATCTTGGTGATTACCCCGCAGCGAAATGGTGATGCGGGTGGT GTTGGTGGTGCTGCTGCCCACCACAACGATAGTTGGATGGATGGGTGGGGCAGGGACGCAGGAAC CATTTTTTAGGCCGCACTTTGCGGCGCAGATGAGGCTCGTTCAAAATTTATAACTGAAAATGATG TCACAAAATACTCTGCTGGTGTGGGATTGATGGGAGTTGCGAAAT Found at i:4332983 original size:8 final size:8 Alignment explanation
Indices: 4332970--4332988 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 4332960 ATTCCATGGC * 4332970 TTTCGGTG 1 TTTCGGGG 4332978 TTTCGGGG 1 TTTCGGGG 4332986 TTT 1 TTT 4332989 ACGAGAATGG Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.00, C:0.11, G:0.37, T:0.53 Consensus pattern (8 bp): TTTCGGGG Left flanking sequence: Indices 4332470 -- 4332969 AAATGTCAATGGGTAAATGGTAAATGGGCTAGGCGGATGAAGCGGGAGCGGGAGTGGGTGGGTGG TGGCGCTTAGCCGCCTTCACGACTTTTAATTTTCATAATGATTATGGCCCCTACAACGGTACATG TGGGTGGGGCCAGTTGCCCCTTTTTCCGGGTGGCAGATTTTCCGCTTCTTCCCCGCCATTTGGCC AGTAACGAAATCATTTTAGCACAACTGGCGCGTTAAAAATGCTTAAAATGTGAAACGCACGGCGA CGGCGACGATGATGATGGAAATTTTTCGGGTAAACATATAAAAAACAAAGCGGCAAAAAAAAAAA GCATTCAGCCAGCGAAGAGGGTAGAGGGAAGAAAATTCGCAAAACGGCGTTAAAATGTAGGAAAA TCCGCAAGGAAATGTGGACAGCGGAAGGAAGCTGCATGATGAATTATGTTTATGACGCAATATGT TGCGGCAGGACTCCGGCCGGACCCCAAGCCATACTATTCCATGGC Right flanking sequence: Indices 4332989 -- 4333488 ACGAGAATGGCCAGTTCCGCCCGGGTCTTGTATCATTTGCAGGCTGTCAGGGGCGCGAGTGTGTG TGTGTGAGTATCTGTGGTGGGGACGCGTAAATGGCGGTTAATGTGGGCAGACGGCCATCTTGGTG ATTACCCCGCAGCGAAATGGTGATGCGGGTGGTGTTGGTGGTGCTGCTGCCCACCACAACGATAG TTGGATGGATGGGTGGGGCAGGGACGCAGGAACCATTTTTTAGGCCGCACTTTGCGGCGCAGATG AGGCTCGTTCAAAATTTATAACTGAAAATGATGTCACAAAATACTCTGCTGGTGTGGGATTGATG GGAGTTGCGAAATAGTTATGACTCGAGGCAGTAAACTAAGCACTTTCCAGCAAACTGCAGTAGAT ATCCGTAGATAGTCCTCCGATAGTAAATCCATCAATAAAAAGTTAAACATCTATGGGGTAGCTTA AAATAACTAAAAACATATCCGATGAACATACCACTATTTAAAGTA Found at i:4334362 original size:10 final size:10 Alignment explanation
Indices: 4334347--4334371 Score: 50 Period size: 10 Copynumber: 2.5 Consensus size: 10 4334337 GCCGCGCAGC 4334347 TGCCACTGGA 1 TGCCACTGGA 4334357 TGCCACTGGA 1 TGCCACTGGA 4334367 TGCCA 1 TGCCA 4334372 ATGTGGATGC Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 15 1.00 ACGTcount: A:0.20, C:0.32, G:0.28, T:0.20 Consensus pattern (10 bp): TGCCACTGGA Left flanking sequence: Indices 4333847 -- 4334346 CCAGAGATGCCGGGAATCGGAGGGTTCATGTGGGTGACCTCATTAGCCGGCTCAATTTGCTATAC AATTGAACGTGCGTGAACGTGGTGTGTGAGTGTGTGTGTGTGTGGAGTCTCCAAGGAGGAGCAGC CTGCTTCATTCGATGCACTGGAAAACTCATATCTTATAGCGCCCCATTTTTTAACAAATTTAAGT TGAGCAACATTGAAACATACAATAGTTAAAAGACATAAGTCAGTCAGAATATCTTGTCTAGTTTG CAGTGTACACTTGTGTGCATATGAATTAAATACCATTTAAATCGCCTCCATAAGTCAAACTTTAA TGCGATTTTCCCGCATACTTAAATGCCTATTATTTTCGTCCAGTGCAGGCAATGAATTTTTTGCA CCACCATCCAGCGGCCTCTCCCGATGCGGATGCCATTTGCCATCACGGCCGCTAATTGCGCGATT CGGGCGCGTATTAATTAGTTTTTAAATTCTAATGTGCCGCGCAGC Right flanking sequence: Indices 4334372 -- 4334871 ATGTGGATGCGAATTGCGATGCTGCACGGCAGCGGCGGCCATTACGAATGCCAAAAGTCCTCTTA TTGATTGTTGCCGTTGGCAGTGGTGGCAGTGGTGGCCGTGGTAGCACTGCTGGAACTGGTGGCAC ACTGAGGGTGCCGGTGTTTGGCTCCAGGCACCTGCAATAGCCGGAGGCCGTAGCTATGGATGCCA CGATGACGATGGCTCCACCTGCACACGCACATTCGAATTAATTATGTTTGTTATTTATGCATAGG CAGCTGGCAAATGGCGATCCCAACTGCCGCAGTTCGTTGGCCATTTCCCGAGCTCGTCGCGATGT AATTGGCACAAAAAAGCGAAAAAAAAATTGAAAATGGCGAAAAATTGAGCCGTGCTATCTGCGAA TTCAGGCCGGGAATGAAGGGGGTGCTCGAACGGAATGTATCCCCTTTCATTTCCCTACTGCGGGG TCTTAATTATGGCGCTATTATTGCTTCCCCACAGCCCCATCTCCT Found at i:4335687 original size:8 final size:8 Alignment explanation
Indices: 4335671--4335689 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 4335661 GCAACATAAC 4335671 ATACATAT 1 ATACATAT * 4335679 ATACGTAT 1 ATACATAT 4335687 ATA 1 ATA 4335690 GTACAGGGTA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.47, C:0.11, G:0.05, T:0.37 Consensus pattern (8 bp): ATACATAT Left flanking sequence: Indices 4335171 -- 4335670 CTATTATTAATCGCCCCCAGTGCGACGCCCACAACAAGTGAAATTACCAACGCCCCGAATCGTAG GCCAAAAAAGGCAAAATCGGGAAATAATACATATGACCGCATAAACGATTTGCATGCAAACACTT CAATTAAAAACGCCACGAATTTCACATGTATTTATACACATATGCGCTCGCCGCACTTTACTTTA GTGTAAATTGAATTTATTTGCGGACAGCAGTTGCAATTAAATATGCGAACTGTAAACACAGCAAA CTGCCGGCATTTAGTGTTGTTCTCAAACCGTACTCCCTTCTAATCCCACAGATCCCCCAGGACCG CCCTACATCGAGGGATACTCAGCGGGCGAAACTCTGCGCCGCGGCCAGACGGTGGAGCTCATGTG CCGGAGTCGAGGCGGCAATCCGCCTGCCCAGCTCATCTGGTACAAGAACGGATCCCAGATACGCA TGGCCTATAGGTGAGCTACAAATTATCTAATTATTGCAACATAAC Right flanking sequence: Indices 4335690 -- 4336189 GTACAGGGTACAGGGCGGACCTAGAAATTGATATAATCATATGACACAACTAATCTCTTCCAGAA CCTCTGGCCGATTGTCCGAGAACATCTATACCTTCACCGCTGAGGCGGGCGATAACAAGGCGCGA TTCCGCTGCGAGGCAAGCAATGTGATGTCCCAGAATCCACTCAAGGCGGAGGTGGAGCTATCCGT GCTGTGTAAGTCGAGTTCCAAAGGATCTGCTTCCAATTTGCGCTGCCTAATTGTGCGTTCCTCAT ATTTATATATGCAGCCCGGGCTGAGTAGCGTATCAGATTTAATGGGTGTCTAGATTACAGGCCAG GATGCGGGCTAGGGAATCGGAGGGTGGGAAGCCAGCGATGTGGGGACTGGATTGTGTCAACAGCC TGGCTTGCTAGCGACATCTTCCAAATTCCACAGAGCCAGCAGCCCTACTTGGCAGGCGATTCACT GACAGTGGCTGCTAGATTGGAGCCCGGGGATGGAGTACTGGAAAC Found at i:4335702 original size:7 final size:7 Alignment explanation
Indices: 4335690--4335704 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 4335680 TACGTATATA 4335690 GTACAGG 1 GTACAGG 4335697 GTACAGG 1 GTACAGG 4335704 G 1 G 4335705 CGGACCTAGA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.27, C:0.13, G:0.47, T:0.13 Consensus pattern (7 bp): GTACAGG Left flanking sequence: Indices 4335190 -- 4335689 GTGCGACGCCCACAACAAGTGAAATTACCAACGCCCCGAATCGTAGGCCAAAAAAGGCAAAATCG GGAAATAATACATATGACCGCATAAACGATTTGCATGCAAACACTTCAATTAAAAACGCCACGAA TTTCACATGTATTTATACACATATGCGCTCGCCGCACTTTACTTTAGTGTAAATTGAATTTATTT GCGGACAGCAGTTGCAATTAAATATGCGAACTGTAAACACAGCAAACTGCCGGCATTTAGTGTTG TTCTCAAACCGTACTCCCTTCTAATCCCACAGATCCCCCAGGACCGCCCTACATCGAGGGATACT CAGCGGGCGAAACTCTGCGCCGCGGCCAGACGGTGGAGCTCATGTGCCGGAGTCGAGGCGGCAAT CCGCCTGCCCAGCTCATCTGGTACAAGAACGGATCCCAGATACGCATGGCCTATAGGTGAGCTAC AAATTATCTAATTATTGCAACATAACATACATATATACGTATATA Right flanking sequence: Indices 4335705 -- 4336204 CGGACCTAGAAATTGATATAATCATATGACACAACTAATCTCTTCCAGAACCTCTGGCCGATTGT CCGAGAACATCTATACCTTCACCGCTGAGGCGGGCGATAACAAGGCGCGATTCCGCTGCGAGGCA AGCAATGTGATGTCCCAGAATCCACTCAAGGCGGAGGTGGAGCTATCCGTGCTGTGTAAGTCGAG TTCCAAAGGATCTGCTTCCAATTTGCGCTGCCTAATTGTGCGTTCCTCATATTTATATATGCAGC CCGGGCTGAGTAGCGTATCAGATTTAATGGGTGTCTAGATTACAGGCCAGGATGCGGGCTAGGGA ATCGGAGGGTGGGAAGCCAGCGATGTGGGGACTGGATTGTGTCAACAGCCTGGCTTGCTAGCGAC ATCTTCCAAATTCCACAGAGCCAGCAGCCCTACTTGGCAGGCGATTCACTGACAGTGGCTGCTAG ATTGGAGCCCGGGGATGGAGTACTGGAAACTCGCTCGCTGGCTGT Found at i:4336358 original size:8 final size:8 Alignment explanation
Indices: 4336345--4336383 Score: 71 Period size: 8 Copynumber: 4.9 Consensus size: 8 4336335 AGTCCCTCGA 4336345 CCTCTGAG 1 CCTCTGAG 4336353 CCTCTGAG 1 CCTCTGAG 4336361 CCTCTGAG 1 CCTCTGAG * 4336369 CCTCTGAA 1 CCTCTGAG 4336377 CCTCTGA 1 CCTCTGA 4336384 ATTTCTGAAC Statistics Matches: 30, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 8 30 1.00 ACGTcount: A:0.15, C:0.38, G:0.21, T:0.26 Consensus pattern (8 bp): CCTCTGAG Left flanking sequence: Indices 4335845 -- 4336344 TGTCCCAGAATCCACTCAAGGCGGAGGTGGAGCTATCCGTGCTGTGTAAGTCGAGTTCCAAAGGA TCTGCTTCCAATTTGCGCTGCCTAATTGTGCGTTCCTCATATTTATATATGCAGCCCGGGCTGAG TAGCGTATCAGATTTAATGGGTGTCTAGATTACAGGCCAGGATGCGGGCTAGGGAATCGGAGGGT GGGAAGCCAGCGATGTGGGGACTGGATTGTGTCAACAGCCTGGCTTGCTAGCGACATCTTCCAAA TTCCACAGAGCCAGCAGCCCTACTTGGCAGGCGATTCACTGACAGTGGCTGCTAGATTGGAGCCC GGGGATGGAGTACTGGAAACTCGCTCGCTGGCTGTTGCTTTCTTTTGCAATTAAGCTTAAGTTTG CACTTTGAAAGCCTCTCCAGTCTCCGTCCCACTTGGCTTTGTCAAATCAAGCAATGCAAATTCTT TTCAAGTGCCAAATAGCGCAGAGCCCCTCCTCTTCAGTCCCTCGA Right flanking sequence: Indices 4336384 -- 4336883 ATTTCTGAACCTAGCCGTCGCAGCTTGTTAGACTTACAACAATTGCAATCAGGCGCACAAAGCCG ACGGGAGGAGCAGCGCGGTGCCAAAGTCGTTAGCGCGACACTCGGACGGACGAATGGACGGACGG TCGGTGGAGACCAGCAAACATTTGCATGCCACATGCACATACCAACCCGCCTCTTTGGCTCATGT GTCTTGTCGCACATGCAAATGGATGAGGCGGCCGCTCAACGCGGCGTATGCGCGATATTTAAATT TGAAGTGCTCGGCAGTCCACTGAAATTGGCATCTTTTACCTGAAGTCGGCTTTAAGTGCGTGGAG GGTTACTCCGCCCTCAGTTAGGCAGAAACTCGTTTAGCTGGCAGCTTCCATTTTATGCGCATACC AATCAAAGCGCCATACAGGTCAGGCCTGCCGACTCGGCCCCATCTTGCCCCAATAAGTATGCCAC ATTGAGTGGCCAGCACAAACGAATACACCAGCAGTCGCACACTAA Found at i:4336384 original size:8 final size:8 Alignment explanation
Indices: 4336344--4336395 Score: 69 Period size: 8 Copynumber: 6.5 Consensus size: 8 4336334 CAGTCCCTCG 4336344 ACCTCTGA 1 ACCTCTGA * 4336352 GCCTCTGA 1 ACCTCTGA * 4336360 GCCTCTGA 1 ACCTCTGA * 4336368 GCCTCTGA 1 ACCTCTGA 4336376 ACCTCTGA 1 ACCTCTGA ** 4336384 ATTTCTGA 1 ACCTCTGA 4336392 ACCT 1 ACCT 4336396 AGCCGTCGCA Statistics Matches: 38, Mismatches: 6, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 8 38 1.00 ACGTcount: A:0.19, C:0.35, G:0.17, T:0.29 Consensus pattern (8 bp): ACCTCTGA Left flanking sequence: Indices 4335844 -- 4336343 ATGTCCCAGAATCCACTCAAGGCGGAGGTGGAGCTATCCGTGCTGTGTAAGTCGAGTTCCAAAGG ATCTGCTTCCAATTTGCGCTGCCTAATTGTGCGTTCCTCATATTTATATATGCAGCCCGGGCTGA GTAGCGTATCAGATTTAATGGGTGTCTAGATTACAGGCCAGGATGCGGGCTAGGGAATCGGAGGG TGGGAAGCCAGCGATGTGGGGACTGGATTGTGTCAACAGCCTGGCTTGCTAGCGACATCTTCCAA ATTCCACAGAGCCAGCAGCCCTACTTGGCAGGCGATTCACTGACAGTGGCTGCTAGATTGGAGCC CGGGGATGGAGTACTGGAAACTCGCTCGCTGGCTGTTGCTTTCTTTTGCAATTAAGCTTAAGTTT GCACTTTGAAAGCCTCTCCAGTCTCCGTCCCACTTGGCTTTGTCAAATCAAGCAATGCAAATTCT TTTCAAGTGCCAAATAGCGCAGAGCCCCTCCTCTTCAGTCCCTCG Right flanking sequence: Indices 4336396 -- 4336895 AGCCGTCGCAGCTTGTTAGACTTACAACAATTGCAATCAGGCGCACAAAGCCGACGGGAGGAGCA GCGCGGTGCCAAAGTCGTTAGCGCGACACTCGGACGGACGAATGGACGGACGGTCGGTGGAGACC AGCAAACATTTGCATGCCACATGCACATACCAACCCGCCTCTTTGGCTCATGTGTCTTGTCGCAC ATGCAAATGGATGAGGCGGCCGCTCAACGCGGCGTATGCGCGATATTTAAATTTGAAGTGCTCGG CAGTCCACTGAAATTGGCATCTTTTACCTGAAGTCGGCTTTAAGTGCGTGGAGGGTTACTCCGCC CTCAGTTAGGCAGAAACTCGTTTAGCTGGCAGCTTCCATTTTATGCGCATACCAATCAAAGCGCC ATACAGGTCAGGCCTGCCGACTCGGCCCCATCTTGCCCCAATAAGTATGCCACATTGAGTGGCCA GCACAAACGAATACACCAGCAGTCGCACACTAACACTGCACTGAG Found at i:4337557 original size:7 final size:7 Alignment explanation
Indices: 4337539--4337559 Score: 33 Period size: 7 Copynumber: 2.9 Consensus size: 7 4337529 AAGGCTATTA 4337539 GGAAAGCG 1 GGAAA-CG 4337547 GGAAACG 1 GGAAACG 4337554 GGAAAC 1 GGAAAC 4337560 CAGGGGGTTC Statistics Matches: 13, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 7 8 0.62 8 5 0.38 ACGTcount: A:0.43, C:0.14, G:0.43, T:0.00 Consensus pattern (7 bp): GGAAACG Left flanking sequence: Indices 4337039 -- 4337538 TCAGCTGGCGGCCCGAGCTCTTAGCACACGCATTATTTATGTATAACGAATGTGGAACAACAAAA CTGAAGACGTAGCAGGAATACATTCAGCATCAGCATTCTTTTGCCCCTCACGAGTGTGTGTGCTA GGGTGTGTGCCCGGAATGAAGATGTATGGTTAAGACGGACCGACGAAAGATGCGAGAAGTTAAGA ATTCATAATGTTTATTTATATGCGAAACATATCGAGTCGAAAGTTTCGTATTCCCCGCGCACCAT TCCCATGCCCAAGTCCCGGCCCTATATGAAGCCAAAGACAACGCTGCGTATGCGTAATGTATGCA CTTATCCATCAAGGCAGCGGCAGTGGCAGCTGCAGCTGCTCCAGCTTCTGCTTCTGTTTCTCTCT GCTTCGACGGCATTAGGTAATAGCTCCGCAGCCGGACGGGCTGTCAGTCACTCAGTCATCATTTG CATGGAGGCGGCATCATGAGCCGACATTCCTCCCCAAGGCTATTA Right flanking sequence: Indices 4337560 -- 4338059 CAGGGGGTTCTTTGCTATCTGGAGGACAGGAGATACTCGTGTGTGCCTGCTCCGAGCATGCCGCA AGTGAGCCTCGCCGCAAACCTATTACATATTAATGCCTCCTTCATTATGCTACTCCCGGTAACTG AAATCAACCCGAAACCTTCTGCCTTCCCAGTTGCACCCACCCACGTCACCGTAATGGGACCCACC GAGGCGCGCGTCGGCGATATTGTGCCGCTGACATGCACCACCGCGCCATCGAATCCGCCCGCCGA GATCAAATGGATGGTGGGCGGGCGGCAGGTGCGCAATGCCACCTCAAAGACGATTGTCAGTCCCG AGGGTAAGTGCTGTTGCCGGTATGACATAATCCCCTGCCTAATCCATTTCCATCTCTGCCTGTCA TCGCAGGCGGTTGGACGACCACCTCGAACATCACCGCCGTCGTGGAGCCCAACAAGCGCTCCCTG GTCGTCATCTGTCACGGACTGAACATGCAGCTGACCGAGAACGTC Found at i:4340407 original size:7 final size:7 Alignment explanation
Indices: 4340397--4340411 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 4340387 GCGCCCAATC 4340397 AAGGACG 1 AAGGACG 4340404 AAGGACG 1 AAGGACG 4340411 A 1 A 4340412 TACGATGGTA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.47, C:0.13, G:0.40, T:0.00 Consensus pattern (7 bp): AAGGACG Left flanking sequence: Indices 4339897 -- 4340396 CATTTGACTCAATTATAAGCGAAGGCAGTGACAAAAAACACGCAGGAAAAAATAGATGTCGGCGA AGGAGGACACCGGGATGCTGGGATTGCGGATTTCTGGGGAAGATGAAAGGACTGACAGGCAAAGT CACTCGATAACAGGTTGAATGGCGTTGGTTCGGTTTGGGGCAGTAGTTAAGCCGATGCCGGGGCT TATTAATAATTGCGATTCTAGTTTCGGTTTATCCATCCAGAGACCTCATGGCTCCGCCTTCGCCC CACCGCTTCTCTGACCCTGCGGTGGATGTCCTTTGTAAGCGCTCTCCTGCAGCGCTAATTAATTT TTCTGACCAACATCACAGGGAAAAAGCAGCGGGGGGGGGGGGGGCGGCAAGAGATTTACATTTAT TACCCATACCATGAGCACTGAAAATGACTAACGGACCCCTAAGGTAATGAGCGGTCCTCCTGAGC GTCCACGCCCACGCCCACTCCCAATCCCCCGCCCAGCGCCCAATC Right flanking sequence: Indices 4340412 -- 4340911 TACGATGGTATGTGCATGGTCATGCCTTGAGGATGCGGACGCCCTGCGGATATTTTTACTTTATG CGCGGCAAATTAAATAATTTTAATTTTTATTGTTCGGCCGCTCTTGGCAGCTCTCACGAAGGACA CAGCGGTGGGTCCTAGTCCTGGCGCTGCCCTCGAGTCCTTTGCTGTTATTGTTGTAGGCCATAAT TTGCTGGCTCGTGGCTAAGTTTTTGGGCCCACAATTCGCTGGACCATTTTCCCTGCTTGGCGCTC CTTTGTTTGTCTCTTTTTTTTGGGAACGTTTTTCTTATCCCGCGCCATGTTCTCCAACTGCCTCC ACAGATCCGCCTGCGCCACCATTAATTTCTGGCTATATGGAGGGACAAATTATCCCAGCTGGCTC GGTGCAAAAACTGCTCTGCGTTTCATCAGGCGGCAATCCGCTGGCGACGCTAACATGGTACAAAA ACGACAAAAGGGTGAGTGCACAAATTTCCTTTTTTTCCCGGCCTT Found at i:4341136 original size:9 final size:9 Alignment explanation
Indices: 4341118--4341138 Score: 35 Period size: 9 Copynumber: 2.3 Consensus size: 9 4341108 AGTGCTAATG 4341118 AGCCACTGC 1 AGCCACTGC * 4341127 AGCCATTGC 1 AGCCACTGC 4341136 AGC 1 AGC 4341139 GCTCTTGTTC Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.24, C:0.38, G:0.24, T:0.14 Consensus pattern (9 bp): AGCCACTGC Left flanking sequence: Indices 4340618 -- 4341117 TGGCTAAGTTTTTGGGCCCACAATTCGCTGGACCATTTTCCCTGCTTGGCGCTCCTTTGTTTGTC TCTTTTTTTTGGGAACGTTTTTCTTATCCCGCGCCATGTTCTCCAACTGCCTCCACAGATCCGCC TGCGCCACCATTAATTTCTGGCTATATGGAGGGACAAATTATCCCAGCTGGCTCGGTGCAAAAAC TGCTCTGCGTTTCATCAGGCGGCAATCCGCTGGCGACGCTAACATGGTACAAAAACGACAAAAGG GTGAGTGCACAAATTTCCTTTTTTTCCCGGCCTTTGTTTGCATTTTCCGCAGAAAACTCAAACAC ACACTCGAACACACACACACTTGCATAAACAGTCACACACATACACACACTGAACAAAGAGCGAG CGGCAGGGAGAGAGAGCACTATCAACGGCAGGCAGCAAACATCCGCAAAACAATAATGGCGCTTT TGTTGACCATTTCCGCTTCCGCTTTATGGACTTAAAGTGCTAATG Right flanking sequence: Indices 4341139 -- 4341638 GCTCTTGTTCTATGCGCTCCTGATGCCAGAGCGATTTCGGTTTTCACACCTTCCGCCCACCACCA ATAATCGAGGGAGCACAACTATCGTTAGAACTTTGAACAAAAGGCGGTAAATACGATGGAAAAAT AAAACAAGTCACCCACAACCGCAGCTCATCAGCCCACACACTTAAACGACGGAATGTTGGTTGCT GGGTGGTAGGTGGCAGGTGCACCTGCAGTTTCAGGTGCGGCTTCCTGTTTTAGCGTTTCCCATTT GTTGTGGTGTCATAGTTTTCATCTCTGCCCCTCGGGGGACTCATCTGTGTGCCGTGTTTGCTCTC CAGCTCGCTAGCTCGCCCGCTTGCTCGCCCAGATTAGACGACGTTTTATCAGCGAAATTAAAATG CATCCGCCAGATGCGCTCTGCGGAGATGCTTTCCAGCCAGAAAAAAAATATATAAGTACTCCATT CCTTTGCAGATAAACTCGGTCATACGGGCGGCGGACAAATCGGTG Found at i:4341351 original size:7 final size:7 Alignment explanation
Indices: 4341335--4341352 Score: 29 Period size: 7 Copynumber: 2.6 Consensus size: 7 4341325 TTGGTTGCTG * 4341335 GGTGGTA 1 GGTGGCA 4341342 GGTGGCA 1 GGTGGCA 4341349 GGTG 1 GGTG 4341353 CACCTGCAGT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.11, C:0.06, G:0.61, T:0.22 Consensus pattern (7 bp): GGTGGCA Left flanking sequence: Indices 4340835 -- 4341334 CAATCCGCTGGCGACGCTAACATGGTACAAAAACGACAAAAGGGTGAGTGCACAAATTTCCTTTT TTTCCCGGCCTTTGTTTGCATTTTCCGCAGAAAACTCAAACACACACTCGAACACACACACACTT GCATAAACAGTCACACACATACACACACTGAACAAAGAGCGAGCGGCAGGGAGAGAGAGCACTAT CAACGGCAGGCAGCAAACATCCGCAAAACAATAATGGCGCTTTTGTTGACCATTTCCGCTTCCGC TTTATGGACTTAAAGTGCTAATGAGCCACTGCAGCCATTGCAGCGCTCTTGTTCTATGCGCTCCT GATGCCAGAGCGATTTCGGTTTTCACACCTTCCGCCCACCACCAATAATCGAGGGAGCACAACTA TCGTTAGAACTTTGAACAAAAGGCGGTAAATACGATGGAAAAATAAAACAAGTCACCCACAACCG CAGCTCATCAGCCCACACACTTAAACGACGGAATGTTGGTTGCTG Right flanking sequence: Indices 4341353 -- 4341852 CACCTGCAGTTTCAGGTGCGGCTTCCTGTTTTAGCGTTTCCCATTTGTTGTGGTGTCATAGTTTT CATCTCTGCCCCTCGGGGGACTCATCTGTGTGCCGTGTTTGCTCTCCAGCTCGCTAGCTCGCCCG CTTGCTCGCCCAGATTAGACGACGTTTTATCAGCGAAATTAAAATGCATCCGCCAGATGCGCTCT GCGGAGATGCTTTCCAGCCAGAAAAAAAATATATAAGTACTCCATTCCTTTGCAGATAAACTCGG TCATACGGGCGGCGGACAAATCGGTGTCGGCCGAAATCACCATTCTGGCCAACGTGTCGGACAAC CAGGCCCAGTACCGGTGCGAGGCCTCCAACAGCGCCACCGAGATCCCGCTCTTTCAGTCCACCAC GCTCAGCGTCCACTGTGAGTATATATCAGAGGTTAATAACACTTTAACCTAAGAAAATAGCTAAT AATAAGCAACACAAATAAGTAAATAAATAAGACTACTTATTTCTA Found at i:4342983 original size:8 final size:9 Alignment explanation
Indices: 4342970--4342988 Score: 31 Period size: 8 Copynumber: 2.2 Consensus size: 9 4342960 AAGCCAATAA 4342970 TGTAT-CTT 1 TGTATCCTT 4342978 TGTATCCTT 1 TGTATCCTT 4342987 TG 1 TG 4342989 GCTGAACTAC Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 8 5 0.50 9 5 0.50 ACGTcount: A:0.11, C:0.16, G:0.16, T:0.58 Consensus pattern (9 bp): TGTATCCTT Left flanking sequence: Indices 4342470 -- 4342969 CTTGCCCATCGCAATTCGCCATGGACTTGCCGGCGCCACCAGTGCACTTTGCTGGTGCGAGGCGT TTCCACGACAACATCCGGTTCGCTTGCCAGTCACTAAAATTACGCCCATTTTTTCTCCGTACCCA TTCCTACCTCATCCCCTTGCCCTGCCCTATCCGGATCCTGTGTCCCTGTCCGCCCACCGGAACTC CCGACATGCCCCAACCCACAGGCATTAATAACACGTCCAAGCCGGGTCTCTGGGGCGGCACGGTC TCGACGCTAGAGTTCAGGGTGAACGTCACACAGGAAATGAACGGCCAGGTCTACACCTGCCAGAG CGCCAACGAGGCTCTTCAGCGGAGCGCCCACGAGGCAGTCAGCCTGGATGTCCTGTGTAAGTACG TCCCGCCTAATTGCTCAATTAGACGGGATATCCAATCGCTTGCCGATTCCTTAAGAAATTGCACA AAAGAGCGACAGTTGAACTTGTGTCCGATATCCCTAAGCCAATAA Right flanking sequence: Indices 4342989 -- 4343488 GCTGAACTACCATAGTATGAACCACCACTTAGAACAATTGTAAAATGGTTAAATGTTTCATACAA TGAGATAAGGCTTACCAAGAGATATCGGAATAGCCCGGTTAACCAAAGATTTACTGGAACACATT TGGTATATCCTTATTCCCCAGATCGACCCAAGTTCGTGCCGCCGCCCTCGTCGACGGCGGTGGGC GTGGAGGGCGAATCGCTGCAGGTGTCGCTCCAAACTCGGGCCAATCCCACTCCAGTGACCTACAA GTGGACCAAGGATGGCACCACAATACCGCAGGACGGCGATCATCGCATCTTTGCGGATGGCGGCA GCCTGAACTTCACACGGCTGCATCGGGATGATGCGGGAATCTACTCCTGCAGCGCCTCAAACTCG CAGGGAGGAGCCACCCTTAACATCACTGTCGTTGTGGAATGTAAGTACTTTGCGCTGTGTGATTC CCTTTATTAGGCTAATTTCGGCCATCGCCATGCAGACGGAACCAC Found at i:4345819 original size:8 final size:8 Alignment explanation
Indices: 4345803--4345823 Score: 35 Period size: 8 Copynumber: 2.6 Consensus size: 8 4345793 AGGTGAGGGG * 4345803 ATCCATGA 1 ATCCGTGA 4345811 ATCCGTGA 1 ATCCGTGA 4345819 ATCCG 1 ATCCG 4345824 GCGGTTGCTG Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 12 1.00 ACGTcount: A:0.29, C:0.29, G:0.19, T:0.24 Consensus pattern (8 bp): ATCCGTGA Left flanking sequence: Indices 4345303 -- 4345802 AAAGGTTTACAGGGACGTTTGGGAACCCATTTCAACTGGGCCTGCACCACCACCAGCTGGGCTAT TCAAATGGACACGACTGTAGTTTATGAAGCGTAAGAAATGGCTTACAGCCAGACGTTACCATGGA CTCATATGGAGCCACCTCAATCCGATTTGCTGTCTCACTCAATGATCTCCTCCGACCCTTGCTGC TGTTAATTGGAATTGCATTACGACCATCACCAACGTCAACAAAACGAACGACGCAACCACCGCAA ATGGCCACTATCCACCATTCGCGCATCGCATTCCGTCCTCCAGAAGCCCCGCCCCCCTCGCATCC GGCCTCGTCGCTGGGAGGCGGACCGCCGACCACCAGCCAGACGCCGCTGGGCGGCACATCGGGCA TGCTCCTGGTGGGCGTGGGCGCCGGCATCGTCGTTGTCCTGCTCAACGTGTTTGTCATCGGCTGC TGCCTGCACAAACGGAACGAGAAGCGCCTCAAGCGAGGTGAGGGG Right flanking sequence: Indices 4345824 -- 4346323 GCGGTTGCTGCTGCTGCTGCCACACAGGGAGAAATGTCCAAGAATCCATATCTTTCTTATATCTT AGTGAAAAAGGGTTATAGTTCTCAAACCAGCAGTATAGATATAAGAGCGTTATAAAAAAGTCTGA TTAATTTAAACTATGATCGTAAGTAGTTTGCCTTCTTATTTATTCTTGAAATATTTGTGCGCATA AGAGCAATAGTTATAATCTGAGTGTGCTGCCATTATTGCCCCATTGACCAAGACAGGGTTAAATG GGAAGCTGTTGTCGGAGCTGCGGAACCGCGGAGCTCGAGTCCATGGACATTTGAATTCCTAATTC CCCCGGCTCGACTCGCAGTCGCCTCCGTTATTTTCTTTTAATTTGTGGGCGTTGTCAGCGCACGT GCCCGGTGGTCAGCAAATTGCGCAAGGGAATGGGATTGGGATCGGGATCGGGAAGGGAAATGGGT ATGGGTATCGGTATAGGGATGGGGATGGCAATGGAATTGGACATC Found at i:4346438 original size:7 final size:7 Alignment explanation
Indices: 4346422--4346438 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 4346412 TTTGCGTCAC * 4346422 TCGCTGG 1 TCGCTAG 4346429 TCGCTAG 1 TCGCTAG 4346436 TCG 1 TCG 4346439 GTCTCTTTAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.06, C:0.29, G:0.35, T:0.29 Consensus pattern (7 bp): TCGCTAG Left flanking sequence: Indices 4345922 -- 4346421 TATAGATATAAGAGCGTTATAAAAAAGTCTGATTAATTTAAACTATGATCGTAAGTAGTTTGCCT TCTTATTTATTCTTGAAATATTTGTGCGCATAAGAGCAATAGTTATAATCTGAGTGTGCTGCCAT TATTGCCCCATTGACCAAGACAGGGTTAAATGGGAAGCTGTTGTCGGAGCTGCGGAACCGCGGAG CTCGAGTCCATGGACATTTGAATTCCTAATTCCCCCGGCTCGACTCGCAGTCGCCTCCGTTATTT TCTTTTAATTTGTGGGCGTTGTCAGCGCACGTGCCCGGTGGTCAGCAAATTGCGCAAGGGAATGG GATTGGGATCGGGATCGGGAAGGGAAATGGGTATGGGTATCGGTATAGGGATGGGGATGGCAATG GAATTGGACATCGCGATGGGAATCGCTGTGGAATGGCGATGGCGTCGCTAATTTCATTTGCCATC ACATGTTCCGGCTCCGCTTCGCAGGCTCTACGTGATTTGCGTCAC Right flanking sequence: Indices 4346439 -- 4346938 GTCTCTTTATTTGATTTCGCTGCGTGTGCCCGCCATGCCAACCGAATTCGACCCCTGACCCCTGG CCGTCCCGACCCCAGACCGTCCTTTGTCCGGAGCCCATGGCCGAGTACCCGATTCAGAGTCCAAA TCCGAATCCGAGGCGGACGCAAGTGAAACTGGGGCAGCGCGTTCATTGCTATGCTCTGCGCCATT TTATATTTTTATTCCTCACCACGATATTATTCCTTTTTATTACAATTTTTCATTTCATTTCGCAT TTATTTATTGTTTTATTTTCGCAACCATATTTTCTTTTGTTTTTTTGCATGGTTCGTTTTGTCAA GGACTTGAACTGATGCCAGCCGAGTTAACCGAGGACTCCAGCAATACACCGAATTTGGTCATAAT TGGCATCTCTCTGGCGGCATTCGGCTTCCTCCTGGTCAACGCGTCGCTGGTTGCCTGGTTCTTTG TGCATCAGCGCCGCAAGAAAGGTTATTATTATTATTTATTATTAT Found at i:4346500 original size:7 final size:7 Alignment explanation
Indices: 4346488--4346502 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 4346478 AACCGAATTC 4346488 GACCCCT 1 GACCCCT 4346495 GACCCCT 1 GACCCCT 4346502 G 1 G 4346503 GCCGTCCCGA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.13, C:0.53, G:0.20, T:0.13 Consensus pattern (7 bp): GACCCCT Left flanking sequence: Indices 4345988 -- 4346487 CTTATTTATTCTTGAAATATTTGTGCGCATAAGAGCAATAGTTATAATCTGAGTGTGCTGCCATT ATTGCCCCATTGACCAAGACAGGGTTAAATGGGAAGCTGTTGTCGGAGCTGCGGAACCGCGGAGC TCGAGTCCATGGACATTTGAATTCCTAATTCCCCCGGCTCGACTCGCAGTCGCCTCCGTTATTTT CTTTTAATTTGTGGGCGTTGTCAGCGCACGTGCCCGGTGGTCAGCAAATTGCGCAAGGGAATGGG ATTGGGATCGGGATCGGGAAGGGAAATGGGTATGGGTATCGGTATAGGGATGGGGATGGCAATGG AATTGGACATCGCGATGGGAATCGCTGTGGAATGGCGATGGCGTCGCTAATTTCATTTGCCATCA CATGTTCCGGCTCCGCTTCGCAGGCTCTACGTGATTTGCGTCACTCGCTGGTCGCTAGTCGGTCT CTTTATTTGATTTCGCTGCGTGTGCCCGCCATGCCAACCGAATTC Right flanking sequence: Indices 4346503 -- 4347002 GCCGTCCCGACCCCAGACCGTCCTTTGTCCGGAGCCCATGGCCGAGTACCCGATTCAGAGTCCAA ATCCGAATCCGAGGCGGACGCAAGTGAAACTGGGGCAGCGCGTTCATTGCTATGCTCTGCGCCAT TTTATATTTTTATTCCTCACCACGATATTATTCCTTTTTATTACAATTTTTCATTTCATTTCGCA TTTATTTATTGTTTTATTTTCGCAACCATATTTTCTTTTGTTTTTTTGCATGGTTCGTTTTGTCA AGGACTTGAACTGATGCCAGCCGAGTTAACCGAGGACTCCAGCAATACACCGAATTTGGTCATAA TTGGCATCTCTCTGGCGGCATTCGGCTTCCTCCTGGTCAACGCGTCGCTGGTTGCCTGGTTCTTT GTGCATCAGCGCCGCAAGAAAGGTTATTATTATTATTTATTATTATTATTATTATGACTATTATT TGGGCAGTATATGCACTGCACTGGTTTATTTGCTGTGGCTGCTAG Found at i:4347307 original size:9 final size:9 Alignment explanation
Indices: 4347293--4347312 Score: 40 Period size: 9 Copynumber: 2.2 Consensus size: 9 4347283 ATTTCCGCCA 4347293 GCAACCAAT 1 GCAACCAAT 4347302 GCAACCAAT 1 GCAACCAAT 4347311 GC 1 GC 4347313 CAAGCATGGC Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.40, C:0.35, G:0.15, T:0.10 Consensus pattern (9 bp): GCAACCAAT Left flanking sequence: Indices 4346793 -- 4347292 CGAGGACTCCAGCAATACACCGAATTTGGTCATAATTGGCATCTCTCTGGCGGCATTCGGCTTCC TCCTGGTCAACGCGTCGCTGGTTGCCTGGTTCTTTGTGCATCAGCGCCGCAAGAAAGGTTATTAT TATTATTTATTATTATTATTATTATGACTATTATTTGGGCAGTATATGCACTGCACTGGTTTATT TGCTGTGGCTGCTAGTTGGGATCCGTTTTTGATTGAGGTTACTTCTGAGCGGGGCTGTCGCACTC CGAAATCCACTCCGAGAACCACTAGACAATTGCACTGCCATGTTGCAGCGGCAGCCGGCACCGCT TCCGTGACACCACCGGAAGCGGAAGCGAGCGCGTTGTGCTGCATCCGCTGCCCACTGAGGACGTC GCTTTCTCTTTATGAAGCTCACTAAACAATTTCCTGCATACGCAGGCTCACAGGACCCATCCACT CCACCCGGATCACTTTCCCGCCTTGGCTTCTGGTAATTTCCGCCA Right flanking sequence: Indices 4347313 -- 4347812 CAAGCATGGCATGGCCAGGATGCGGCAGCCAAGGCAAAAAGTCTCCGGCTGGAGTATAATGATGA CAGAAAATAATGATGCATCCTGGGCACCCGGCAGCCAAGAGCTGCTGTTTATTGAACAAGCGTCT CGGACAGCCAGCAAGACAAATGTGCATCGTTTTCTTAGCTGAATGCACAATCTCCCGGAAATCAG ATTGCTTTCCCAGTTCACCGGCGGCGGACGGGGTTCAGAGGTCGGGGCGCACGTGTCGACAATTG CTGGACATGTTTGCCGAGGGCTGTTTATTAAAACGAAATTATTTTTCACCACTAGAGTGGAGTGG AGCCAACTTTAAAATGGAATCCCTGATGGCGCCATCAGTCCAATTGTTACCATTTTCCCGACCAG CTTTCCTTAGCCGAGCCACTCCATCCAACTGACTGGCAAATTCGAGACGTGGCCCGCACACACGG CGTATACGCAATGTGCCAGCACAGAATCGCTATTACGTGCCACCG Found at i:4348653 original size:8 final size:8 Alignment explanation
Indices: 4348636--4348656 Score: 35 Period size: 8 Copynumber: 2.6 Consensus size: 8 4348626 ATGCGAGTGC * 4348636 GAGCAGCT 1 GAGGAGCT 4348644 GAGGAGCT 1 GAGGAGCT 4348652 GAGGA 1 GAGGA 4348657 AAACCCTCCT Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 12 1.00 ACGTcount: A:0.29, C:0.14, G:0.48, T:0.10 Consensus pattern (8 bp): GAGGAGCT Left flanking sequence: Indices 4348136 -- 4348635 ATTCCTTTGCCCAGAGTGTTGGCACCATGTGAACCGTCTTGCAGTTCTGCTTATTTGCTGCTGTA TGATGTGTGCTGTGCCATGCAGTTTTCGTAAACATTTGAGTTATGACTTGATTATCATCTCGGGC TCTGTCAGTGGAAAACTTTTGATTCATTAGGCGAGTGAAAAAGGGGACGACACGCCCCGAAACTA AACTAAACTGACTTAATCGGGCAACGAAATGTGGGCCAGTTATTTTTTGACATTTTCAAACGGGA AGCACGAAAAGCATGAACTACAGCCGCAGGACATAAATAAGAAATTTCCCTAAGAATCCCAGGCC GGGCCAGACTCCATTATTTCTGTCCTTCGTTTCGCTGGCAGTGCGGCACAGTTGAACAAATGGCG AGTGCCGGGATACGAATGCAATCCAGCTCCACACAAAAGAAAATTCATATTTCAGTCTTGCTGCA AACAAACACAGAAGCCAAACCGAAAACGAATGCGAATGCGAGTGC Right flanking sequence: Indices 4348657 -- 4349156 AAACCCTCCTGGAAGAAACAACATTTTTATGACAATGTACGGCAAGGGGAGCAGCCGCATCCCCA TCCCCATCCCCTTATCCCTGTCAAAAGCCGATAACTGACAATGCCCAAAAGGATTTTTACTTTTC CCGTTTCAGTGTTCACAATTTTTCCATCCATTTCGCTTCTTTTTTCTCTGTGAAGTTGTCAGAGA AACTGGTGCGTTGGCCAGCCGGCGGAGCTGAGAGCTTGGGAATGGTATTGGGTATAGTAGTGGGA GGAGGAGTAGGACTGGCAGTGGAAGTCGGTGGACCCTGTCGGGGGATATCTCTCTGCATATTTCA ATGTTTTCGCTGGCGAAACTTGACTTGTGTTTTTGTTGCAGCCCTCGGATATGCATTTTTAATGT GCATTTGTGCCTTTGTGTCAAAATGCCGCATGGCGCACAAAAAGGAAATCCATCCCGCTCCAAAT CTCATCTCAACCCAACCCATTTCCCTCGGCCCATCTTATCCTGAA Found at i:4349061 original size:8 final size:8 Alignment explanation
Indices: 4349044--4349063 Score: 33 Period size: 8 Copynumber: 2.5 Consensus size: 8 4349034 GCATTTTTAA 4349044 TGTGCATT 1 TGTGCATT * 4349052 TGTGCCTT 1 TGTGCATT 4349060 TGTG 1 TGTG 4349064 TCAAAATGCC Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.05, C:0.15, G:0.30, T:0.50 Consensus pattern (8 bp): TGTGCATT Left flanking sequence: Indices 4348544 -- 4349043 CAATCCAGCTCCACACAAAAGAAAATTCATATTTCAGTCTTGCTGCAAACAAACACAGAAGCCAA ACCGAAAACGAATGCGAATGCGAGTGCGAGCAGCTGAGGAGCTGAGGAAAACCCTCCTGGAAGAA ACAACATTTTTATGACAATGTACGGCAAGGGGAGCAGCCGCATCCCCATCCCCATCCCCTTATCC CTGTCAAAAGCCGATAACTGACAATGCCCAAAAGGATTTTTACTTTTCCCGTTTCAGTGTTCACA ATTTTTCCATCCATTTCGCTTCTTTTTTCTCTGTGAAGTTGTCAGAGAAACTGGTGCGTTGGCCA GCCGGCGGAGCTGAGAGCTTGGGAATGGTATTGGGTATAGTAGTGGGAGGAGGAGTAGGACTGGC AGTGGAAGTCGGTGGACCCTGTCGGGGGATATCTCTCTGCATATTTCAATGTTTTCGCTGGCGAA ACTTGACTTGTGTTTTTGTTGCAGCCCTCGGATATGCATTTTTAA Right flanking sequence: Indices 4349064 -- 4349563 TCAAAATGCCGCATGGCGCACAAAAAGGAAATCCATCCCGCTCCAAATCTCATCTCAACCCAACC CATTTCCCTCGGCCCATCTTATCCTGAACCCGAATCCCACTCATCGGCAAACCAAAGCCCAACCG CACTGGAGGCCGCCTAAGAAGCCTTTCGCTGTAGTTGTCGCTGTCCGATAAACTATGCCAAAAGT CTGCGGTTGGCAGCTGGTTCAGTGGTTCAGCTCCGCCGCCGACTGCCGTTCGTCCGTAGTCCGCT GTCCGTTGTCCGTTGTCCGTGGTCCACTGTCCGCTGTCCGTTCGTTCCGTTGCCGGTCATCGACC ACAGTTGCCATGAACAAGAGAGCGGCAGTGACCATCGCATCGCCGCAGCCATAGTCAATGCCCAG TGCCACATATTTCATTCTCGTATGAGCTGGGCCTGAGCCGGAACATCCCGAATAGCGCCATCTCT AATGTTTATTGCCTTTCGCCTGGCCCCAAAAAGTGGATAGGGAAT Found at i:4349286 original size:8 final size:8 Alignment explanation
Indices: 4349273--4349288 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 4349263 GGTTGGCAGC 4349273 TGGTTCAG 1 TGGTTCAG 4349281 TGGTTCAG 1 TGGTTCAG 4349289 CTCCGCCGCC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.12, C:0.12, G:0.38, T:0.38 Consensus pattern (8 bp): TGGTTCAG Left flanking sequence: Indices 4348773 -- 4349272 GATTTTTACTTTTCCCGTTTCAGTGTTCACAATTTTTCCATCCATTTCGCTTCTTTTTTCTCTGT GAAGTTGTCAGAGAAACTGGTGCGTTGGCCAGCCGGCGGAGCTGAGAGCTTGGGAATGGTATTGG GTATAGTAGTGGGAGGAGGAGTAGGACTGGCAGTGGAAGTCGGTGGACCCTGTCGGGGGATATCT CTCTGCATATTTCAATGTTTTCGCTGGCGAAACTTGACTTGTGTTTTTGTTGCAGCCCTCGGATA TGCATTTTTAATGTGCATTTGTGCCTTTGTGTCAAAATGCCGCATGGCGCACAAAAAGGAAATCC ATCCCGCTCCAAATCTCATCTCAACCCAACCCATTTCCCTCGGCCCATCTTATCCTGAACCCGAA TCCCACTCATCGGCAAACCAAAGCCCAACCGCACTGGAGGCCGCCTAAGAAGCCTTTCGCTGTAG TTGTCGCTGTCCGATAAACTATGCCAAAAGTCTGCGGTTGGCAGC Right flanking sequence: Indices 4349289 -- 4349788 CTCCGCCGCCGACTGCCGTTCGTCCGTAGTCCGCTGTCCGTTGTCCGTTGTCCGTGGTCCACTGT CCGCTGTCCGTTCGTTCCGTTGCCGGTCATCGACCACAGTTGCCATGAACAAGAGAGCGGCAGTG ACCATCGCATCGCCGCAGCCATAGTCAATGCCCAGTGCCACATATTTCATTCTCGTATGAGCTGG GCCTGAGCCGGAACATCCCGAATAGCGCCATCTCTAATGTTTATTGCCTTTCGCCTGGCCCCAAA AAGTGGATAGGGAATGCGACCCCATACTGAAAATATTATTTGATAAGAACTAACATGAAATGTGG CAAAAAAAAAAACATGTCTTTTAAAAAGCAGCTTTTAGTTTGGAAGGCCCATAAATTAAGGATTA TCTGTTTCTCTAAATGAGTTTTTAGGTAGCATACTTCACCTCTGAAATCCACCATGCACTGAATC TGGTGAAGTATGATCTTAGCTACTTTCAAAACAATCAAAAGGTCT Found at i:4350382 original size:9 final size:9 Alignment explanation
Indices: 4350367--4350410 Score: 81 Period size: 9 Copynumber: 4.9 Consensus size: 9 4350357 GTCGTGGTCA 4350367 GGGAAATCG 1 GGGAAATCG * 4350376 AGGAAATCG 1 GGGAAATCG 4350385 GGGAAATCG 1 GGGAAATCG 4350394 GGGAAATCG 1 GGGAAATCG 4350403 GGGAAATC 1 GGGAAATC 4350411 TGGCCGAAAA Statistics Matches: 33, Mismatches: 2, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 9 33 1.00 ACGTcount: A:0.36, C:0.11, G:0.41, T:0.11 Consensus pattern (9 bp): GGGAAATCG Left flanking sequence: Indices 4349867 -- 4350366 TGGTTAACAAAGTTAGGGGCATGGGCCTAGCTCCATATGGCAATAGATTTCGAGGCACACAAAAA ATGCCAACTTTTGCTGAAGCCCCCAAACAGGAAATAGAGAGAGAGAGAGAGCAAGTGCACCCATC AACACCGAGGGTGTATTATCTTTTGGCCAGGAGTGAAACTTTAGAGCGAGTCCCGGCGCAAAAGT GAAATGGCCCGCAACCCGATCTCGGGTATAGGGATATAGTTGAGTGCGACACTTTTACGACTTGG CGGGCGGGTCGGACCGAAACTTTTATGCCAACGTTGCCACCAGCGATAAGACCACCCCACCAAGC CCCCACCACTCAGTCCCGGTGGTCGCCCCGCACTGGCGAGCACTTGACTTTGACACTCTTTAAAC AATTGACGGAGGCCCGGGGAACTGGCCAGGGGATTGGGGCCTTCTGTGGCGTGCGTGAGGGAGCT GCGACTTCGAATCTGAAGAGATAAGCGCACAGGCTGTCGTGGTCA Right flanking sequence: Indices 4350411 -- 4350910 TGGCCGAAAACAGAGGGTGATGGAGGCCAGAGGGCTGGCTCAGTCGAAAAGTTTGCTTCTTATGC AACTGGCCATGACAGGCCGAAAGAGCGGATCCATTTGCAGCGGGATTGGGCAATGGTGAATAGGG AACGGGAAACGAAGAATGGGAGTTCATAAATTCATCGCCGGTCGCAGAAACAATGCGCGAAATAG CTCAGCACCCGGCACATTCAAATGGCCGGAGAGCAAATGGTACACCACAATCCCGGCCAGCGAAT AATTTAGAGCGGTGGCCGGAACAGAGGGCTTACCAGAAAAGACCTTCAAAGCAGACGTCGCCGTC ATTAACGTGGCCAGATGACCACAGCATCTGTCTAAGCCGCCGCGCCCCCCCACACATACTACATA GGTTTATAGAAAGAGATCCGGTCGGGCTTTTCCGAGCATAAGTGCAAAATTTGTAATCTCCGTGC GGCGTGGCGTGGCCGCAAAGTGCAGTGGTAACCAGAAAAACAAGG Found at i:4351536 original size:7 final size:7 Alignment explanation
Indices: 4351520--4351539 Score: 33 Period size: 7 Copynumber: 2.9 Consensus size: 7 4351510 ATTTAAATGC * 4351520 ATTTTCA 1 ATTTTTA 4351527 ATTTTTA 1 ATTTTTA 4351534 ATTTTT 1 ATTTTT 4351540 TCCCTATGAG Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70 Consensus pattern (7 bp): ATTTTTA Left flanking sequence: Indices 4351020 -- 4351519 GGGTCGCTTAGGCCTTGCGGTATTTGGGAGTAGGCATCAAAAAACATATACTGGCTTTTAAATAA CATGATTAGCACTAAGGCTAAGAGATATACATAATTCATGATAGTTTAGATGACGCAAATGAAGG GTACACTCACTTCGAATACTCATTTACATATGCCATCTAAGCTTTTGTTTCCTAAATTCATTTAT AAGGGCGCGGGCTCTCTTTTCGCGAAAACACAAAAACGCGTAGATGAGTGGTCATGTTTTTAATT GCCTTAATTGATTAAAGCCAGGTCTATTATTTTAAATGCCCCCTGCACCCGAAGACCCTTCTGCC GGAAAACTCGTTTGTCGCCATAAATAAAACAACTGACAAATGCCCAAAATGTTTTTAACTCGCTA AGCCATTAAATCAGTGAGCTCTCACAGGATGCACACATCTAGATATATATAGGTGAATAGGAATA TATATAGGGCGCTGTCATCGGCAGACCAGTTCTGCATTTAAATGC Right flanking sequence: Indices 4351540 -- 4352039 TCCCTATGAGTGCCCCCACAAAAGTGTATAGACTCCGGATTGGTTGGGCATATGTTTAATGAATT AAAACCCAACCAAACGCAGCCGAATGTTGGTCAATCAAAAAAAATGCAAATTGAAGCATCGGCAG CGCAGAATAAACAGCAGAAAAACAAACAAAATGGAGACAGAACAAAGCAATTTACCTCGAATATT CGGCTGCAATTTGTTAAATATTCATTATACTCGTACATCGACCAACCATCGAACAACGAGCAACA CACAAACGTGCATAAAGTAATTTTGATAACTGCCAAACATTCAATGTTCCTTGTGCAAATTAACA GAAAACGGCCATTTTATCGACTAATAGTCCCCGCATGTCACGTAACCGGAGGACGTGCCGCCCAT GACCCCCATATATCCCCCATATATCCACATCCTGGAAAATGTATTATTAAGAAACCGTAGGCCAT TATATCTTTGCATAGCTCGAGGACGATGATGATGGCAATGATGGC Found at i:4352794 original size:9 final size:9 Alignment explanation
Indices: 4352778--4352801 Score: 41 Period size: 9 Copynumber: 2.7 Consensus size: 9 4352768 ATCGATCCAC * 4352778 CCACCCATA 1 CCATCCATA 4352787 CCATCCATA 1 CCATCCATA 4352796 CCATCC 1 CCATCC 4352802 GCACTATCCG Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 9 14 1.00 ACGTcount: A:0.29, C:0.54, G:0.00, T:0.17 Consensus pattern (9 bp): CCATCCATA Left flanking sequence: Indices 4352278 -- 4352777 TCTTAAAAATGTAGTAATTTCGATTAGACCTTCTTTATCCAAACGGATCGGCAGTAAATTTGAAT TAATCGAATTTTTAAAGTGCCAGGGCATTACAGAAATATAGTTAATGACCCCTTTTCCATCTACA GCAGCAGCAGCAGCAACAGCCAGGGAATCTGAAAATTTTTAAACAATATCCTATAATGTGAACTA TTTTTATATACTTTACATATCCCATCGACGCGTGACTGGAATGTGCTACAATAATGGACTCCACT TTGCGACAAACACGTGTTAACTTCTGCGGAAACCTGGCCATAAATCATTTAATTGCATTTTTACC TTTGCCCCACTATCAACTCATTAATATTACCCGATGTGCCTTACTTTGTTTCCGACACCGCATCG AAATGCACATCAACGAATGCTGCGACAAATGTGAATAATTAACACAATGCCTGCGACCGTGTAAA CACTCAAACACCACCCGAAAAACACCCATTATCCAATCGATCCAC Right flanking sequence: Indices 4352802 -- 4353301 GCACTATCCGCCTACTCCTGTTTCTGGCACTCTGACAATCTTGGCTATTTGCATTTGATTTGCAT TGCCTGAACCTGCCACTGCAACACAATTGGCCACCTCATATCCACCTCCTGGCGCACTGCATCAA CGCCCGCAAAAAACCAACCCCTGCTCCACCTGCTCCTCCTCCTTCACCTGGCACCGCTGCGAATC ATCAATTTTCGGGATGTCAATGCCAATTACACCTTTTCAATATTTGTGCGCATACCTTGGCGTTC GGATCCGTTGCCCTCCGTTTCTGCTCCGCCCTTCTCCGATCCTTGCCCTTCCGGTCCGCTCCTCG TGGCGTCGCCATTTTTTCGTGTGTCGGCGGCATTGGAATACAGTGGCGGAAACTACAAATCAACC GGCAAAAACGGCAACCATCGAGATGTACGCGCCCAGTTCGTATAATGACACCGTTACCGGCGAGA CGCTGTCCAGCGTTTCGGAGAAGAGCGAGTCGTACTCCAATGAGG Found at i:4354561 original size:9 final size:9 Alignment explanation
Indices: 4354549--4354567 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 4354539 GTGAAAGTAT * 4354549 GTAAAGTGC 1 GTAAACTGC 4354558 GTAAACTGC 1 GTAAACTGC 4354567 G 1 G 4354568 ACCGCGCGTG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.32, C:0.16, G:0.32, T:0.21 Consensus pattern (9 bp): GTAAACTGC Left flanking sequence: Indices 4354049 -- 4354548 ATAGGGTTTCCATTCGATTCAAGAGAGTCCAGCCAGCTCTCAGTGTTGAGGGTGGTCACCAGGCC AATCCCCCTGGCCTGCGGCCCTGCGTTTTCAATTATGGCCAATGCTCGAAACGAGAGCAGCCCAA GGCAGGGCTGGCAGGAAGTGCCAGACCAGGCCCAGACCAGACCAGACCAGTCCAGTTCAAGATGC GGCCCAGGAACAAGTCCAGACCAGCGGAGCGGAAACGGAAGCGGCATGCCGACGTCGTCGCTAAG ACGTCGTGATTAATTACGCGGCGCTGATGATGATAATGATGAGCCTGCGAGTAGGCTAAGCGGAG AATAAAACGGGCCCAATTCTGGCACTGAGGGTGGACCTAAGTAGGGGACTGAGTTCGGGAGGCTG CTTCAAACAAATCGTTTCAAATTATTAAAATCATTTATTATCGCCGTAATCTTGCAGCGGCAGGA AAACCGCAGCAACTGTCTAACCCGCAGAAGCTGAAGTGAAAGTAT Right flanking sequence: Indices 4354568 -- 4355067 ACCGCGCGTGTTATAAATCAGCCCCCATCTGATCCGATCCAATCCCGGACGTCTTTGCTTTTTGT CCTTGCCGTTCTGGTACGTTCCTGGTCGTCCTTGGTGTCCGTGTGTCGCCGCTGTCATTGTGGCT GTCAATTACGCGCCAACGACTTTCAACGCCTTTCCCAAAGTATGCCAAAAAGCAAAGTGTGGAGT AATTACGAGGCATTACTCAAATGGGAATGGGAATATAAATTGATATATACCCGACCACGTCGCAT CTGCCGCGCTCCACTCTCCACGCTCAAGTCAACTCAGTCAACACATCTCGTATTCTTTTCCATTC GCAGGACGAGGTGCGCAAGAAGGCGGCGTCCACGTATCTCGTCGAGGGCTCGGATATGCCGCCGC CCAGATATCAGAAGGATGGCACCCTGCCAGTCATCTATCCGAATAATGTTGGTAAGTGTATGTTC CATAAAACGATCTTCAAAATATACCTAAATAAGAGGGAAATTATA Found at