TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_2R assembled 2004-3-18 md5checksum:9f4c91a2cad3c68020b05fff1adf27ee Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 20766785 ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28 Warning! 200 characters in sequence are not A, C, G, or T Found at i: i:19190124 original size:9 final size:9 Alignment explanation
Indices: 19190110--19190130 Score: 42 Period size: 9 Copynumber: 2.3 Consensus size: 9 19190100 GTCAGCCAGG 19190110 AGCAGATGC 1 AGCAGATGC 19190119 AGCAGATGC 1 AGCAGATGC 19190128 AGC 1 AGC 19190131 GACACCTCTC Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.33, C:0.24, G:0.33, T:0.10 Consensus pattern (9 bp): AGCAGATGC Left flanking sequence: Indices 19189610 -- 19190109 GATCTCACGCATCGATCGCCCTTCCTTGAGTGCGTTCCCAAGTCATCAGCATAGCTAAGTGAAGG ATACTAATCAACCAACAATCCTCTCCAGATTCAATGGCGTGGTTCCCAATGTGCCACACGACACC ATCGCCGCAGCGAATGCCCTACCATCGCCGCGCCTGATCAAGTCCCATCTGCCCGCCTGGATGCT GCCGAGGCAGATCTGGAGCAAGAGGCCCAAGATCATCTATGTGTACCGCAACCCAAAGGACGCGG CCATCTCGTACTTCCACCACTGGCGTGGAATGGTGGGCTACCAGGGCACCAAGTCGGACTTTATG CACTCCTTCATCGACGGCTATGTGAACTTCACGCCCTGCTGGCCGCACATCCTGGACTTTTGGCA GCTGCGCCACGAGCCCAACATCTTCTTCACCAGCTACGAGCGGATGAAGGGCCAGCTGGGCCAGG TTATCTCGGAGGTGGCCCAGTTCCTGGAGCGCAGTGTCAGCCAGG Right flanking sequence: Indices 19190131 -- 19190630 GACACCTCTCCTTCGAGAGCATGCGCGACAATCCCGCCTGCAACCACGTCAAGGAGTTCGAGAGC ATGAAGGCGGCTGCCGGCAGGGAGGTGGAGGAGTTCAGGTAAGTCTTTGGATCATGTGCTCTCCA GGAGCAGGCTAATCAGACCAATCTTCCTCGCAGGTTCGTTCGACGCGGAGTCGTGGGCAGCCACA AGGATGAGCTCACCGCCGACATCATACGGGAATTCGATCTCTGGTCCGATAGTAATCTGCGGGAC TTCAAATTGAACATGGATGACTTTGCCAACTACAGCAAGTTTGCGTCCACGTAATTCTCTCTAAT TGTCTTCGCTAAAGTGTTTCTTGGGTAATCTTCGTTAATAGTCTTTAAGCTGTGATGATATATGT ACATATATGTTTAATAAATAATTGCTTCCCGTATACTGTATGTAACTTAATTATTTTATGAGCGA ATTGTTTACGTTCCCGTGGTTGGCACTCCATTATCTACTATGACC Found at i:19194290 original size:7 final size:7 Alignment explanation
Indices: 19194278--19194291 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 19194268 GTGAAAGTAG 19194278 TGAAAGC 1 TGAAAGC 19194285 TGAAAGC 1 TGAAAGC 19194292 CGAGGGCGAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.14, G:0.29, T:0.14 Consensus pattern (7 bp): TGAAAGC Left flanking sequence: Indices 19193778 -- 19194277 TTTTCTTATTTCTCGCTTTTCCTCTGCTGAGTCATGTCGCGTGCGTTTTCTATCAGACGAAAGAG ATGACGTCGCTCAAAACAAAGGAATTTTCAAGCATTGTTTTGAAAATTATACCAGCAATTTGCTT GAATTAGTAGCTCATCAATCATAAAGTTTTACTTCTTAAAATATATCATCGCGAACATATACTAT ATCAAAAACAAAGTGCCGCCCTCTAGTGTTCATATCTAATTTACCAGTGATGCAAGTACAAGTTC AGCTAGTTACAAACAAGTATCTTCTTTTCATTTGCTGCACCTGTTAAAATGGTACATTTTCATAC AATCTCATATATGTTTTCTGTTCCTAACATTTTAGGGACTGGCCCTGTAGTGGATTGTGTACCCA ACACAGCCAAACAAACAGTGAGGCAATCACCCTTCGAAATGGGCCAAAAGCACACCAACACCAGT GCAGCAGTGCATGCACTCGATGGCTGTGTGTGCGTGTGAAAGTAG Right flanking sequence: Indices 19194292 -- 19194791 CGAGGGCGAACGGGGCCAATACTTATGCTTATGCAAGGCAGCCGAGATGCCGAGATGCCGACGCC ACCGCCCCAAAGGGAGGCCAAAAACGGAAAACAGGCGACATTCATCGCAGGACGTGAAGTGTTCA CTGTACTTTGGGAGCGGAGGATAAGTCAAGACGTCAACAGAGGAAGCTGTACGATGGTGAGCTCC AAAAATAAACAAAAATCACAGGAGTGCAACTCCTAGCTCCTAAAGGTGTTCACGAGTATGCAGTG GAAAGTAGTTGTAGTAGTGCTTTCGGAGGCACTTTGGGGTTATATGTCGGATTGGGTTTCACTTT CTTCGCTGCATTACAGTTCGCCCCCCACTCGCTGCCCGTGACGTCACGACTGTTGCTTCTGGTGG TGACACTGCTCTTCTGCCCCGTGCAGGCGCATCTCTCGAAGCGAAGCTACTCGGATCAGAGTGTC CACGGCTACATGACCGAGGTGCCCCAAAGGATAACAGGTGGTACA Found at i:19194345 original size:8 final size:8 Alignment explanation
Indices: 19194332--19194352 Score: 42 Period size: 8 Copynumber: 2.6 Consensus size: 8 19194322 ATGCAAGGCA 19194332 GCCGAGAT 1 GCCGAGAT 19194340 GCCGAGAT 1 GCCGAGAT 19194348 GCCGA 1 GCCGA 19194353 CGCCACCGCC Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 13 1.00 ACGTcount: A:0.24, C:0.29, G:0.38, T:0.10 Consensus pattern (8 bp): GCCGAGAT Left flanking sequence: Indices 19193832 -- 19194331 AGACGAAAGAGATGACGTCGCTCAAAACAAAGGAATTTTCAAGCATTGTTTTGAAAATTATACCA GCAATTTGCTTGAATTAGTAGCTCATCAATCATAAAGTTTTACTTCTTAAAATATATCATCGCGA ACATATACTATATCAAAAACAAAGTGCCGCCCTCTAGTGTTCATATCTAATTTACCAGTGATGCA AGTACAAGTTCAGCTAGTTACAAACAAGTATCTTCTTTTCATTTGCTGCACCTGTTAAAATGGTA CATTTTCATACAATCTCATATATGTTTTCTGTTCCTAACATTTTAGGGACTGGCCCTGTAGTGGA TTGTGTACCCAACACAGCCAAACAAACAGTGAGGCAATCACCCTTCGAAATGGGCCAAAAGCACA CCAACACCAGTGCAGCAGTGCATGCACTCGATGGCTGTGTGTGCGTGTGAAAGTAGTGAAAGCTG AAAGCCGAGGGCGAACGGGGCCAATACTTATGCTTATGCAAGGCA Right flanking sequence: Indices 19194353 -- 19194852 CGCCACCGCCCCAAAGGGAGGCCAAAAACGGAAAACAGGCGACATTCATCGCAGGACGTGAAGTG TTCACTGTACTTTGGGAGCGGAGGATAAGTCAAGACGTCAACAGAGGAAGCTGTACGATGGTGAG CTCCAAAAATAAACAAAAATCACAGGAGTGCAACTCCTAGCTCCTAAAGGTGTTCACGAGTATGC AGTGGAAAGTAGTTGTAGTAGTGCTTTCGGAGGCACTTTGGGGTTATATGTCGGATTGGGTTTCA CTTTCTTCGCTGCATTACAGTTCGCCCCCCACTCGCTGCCCGTGACGTCACGACTGTTGCTTCTG GTGGTGACACTGCTCTTCTGCCCCGTGCAGGCGCATCTCTCGAAGCGAAGCTACTCGGATCAGAG TGTCCACGGCTACATGACCGAGGTGCCCCAAAGGATAACAGGTGGTACATAGTGGCAGCGAGATA ACCCTTTCGTTTCCAATGCATTCTAGCGCACCTGCTGGTGGAACG Found at i:19197604 original size:7 final size:7 Alignment explanation
Indices: 19197592--19197611 Score: 33 Period size: 7 Copynumber: 2.9 Consensus size: 7 19197582 CTAAGCCAAA 19197592 CCCGAAT 1 CCCGAAT 19197599 CCCGAAT 1 CCCGAAT * 19197606 CCAGAA 1 CCCGAA 19197612 GGACACGACT Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.35, C:0.40, G:0.15, T:0.10 Consensus pattern (7 bp): CCCGAAT Left flanking sequence: Indices 19197092 -- 19197591 TTCCTAACGATCTGCTCTGCAGAATTCCTCTCTTTGCAGGTGCCACACGCCATCACCTTGCTGGA ACACCTCGATCTACTGTGCATCGCCGACAGGGAGAACATGAGGGTGGTCTGTCCCAAGTAAGCTA AACTAAACTAGCCATAACTGCAGAATATAAATGGTTAATCGTTTACAGAGCTGGCTTGATATCCT CCCACGGTGAGGGTGAACCGGCGGCCACCATCCAGGAACCGGACCTGGGTCGCGTCTTCGGAGTG GCCAGCTTCGGGGACATAGTGTTCGCCGTTAATGGACCCACATCCATGCTGCCGGTGCGGGGATT CACCATCGATCCGCGCTCGGAGACGATCATCGGGCACTGGGGCGAGTTCAAGAATCCGCACTCCA TGGCGGTCAGTGTCAACGGATCGGCGCTGTATGTGACCGAGATCGGAACCAATCACCAGACGAAC CGAGTGTGGAAGTATGTGCTGGCCTGAGCCTAAGCCTAAGCCAAA Right flanking sequence: Indices 19197612 -- 19198111 GGACACGACTTGCACTGCGCTCCTGCATATCCTTAGACCCATAGACTCATCCCAACTAGTTATCA GCAGAAACAGAAAGAGAACCACAATCAGAGCCGAATCAAATACAGATTATAGCGATCCTAAGCCT AAGCAGAGCCCACACACCAAGTACAGTTTAACGTGACCAGTTGTCAGATCAATAGAGAATAGTCA GTGCTTAAGTAATGTACAAGTTAAGTATGTAAATTGCTTGGAAACAATACCACAACAAACATAAC CTCAGACTCTTATGTTTTGCACTTTAATGAGCAAACAAAAACGAAATGAAAACGAAATTACAAAG CAGCTTAAATAGTACATATACTTAAATGTAATAGTTACGCGTAGGCACTAACTAGGCACGAATGT GAGGATGTGGGGACGCGAGCATGGATAACCGATTTCGCAGATAACCGGGGGCAACCAGCGCATAT AACATACTTGTGTATCATATTGTAACCTATATCAAATATATAATC Found at i:19197656 original size:8 final size:8 Alignment explanation
Indices: 19197645--19197661 Score: 27 Period size: 8 Copynumber: 2.1 Consensus size: 8 19197635 TGCATATCCT 19197645 TAGACCCA 1 TAGACCCA * 19197653 TAGACTCA 1 TAGACCCA 19197661 T 1 T 19197662 CCCAACTAGT Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.35, C:0.29, G:0.12, T:0.24 Consensus pattern (8 bp): TAGACCCA Left flanking sequence: Indices 19197145 -- 19197644 CACCTTGCTGGAACACCTCGATCTACTGTGCATCGCCGACAGGGAGAACATGAGGGTGGTCTGTC CCAAGTAAGCTAAACTAAACTAGCCATAACTGCAGAATATAAATGGTTAATCGTTTACAGAGCTG GCTTGATATCCTCCCACGGTGAGGGTGAACCGGCGGCCACCATCCAGGAACCGGACCTGGGTCGC GTCTTCGGAGTGGCCAGCTTCGGGGACATAGTGTTCGCCGTTAATGGACCCACATCCATGCTGCC GGTGCGGGGATTCACCATCGATCCGCGCTCGGAGACGATCATCGGGCACTGGGGCGAGTTCAAGA ATCCGCACTCCATGGCGGTCAGTGTCAACGGATCGGCGCTGTATGTGACCGAGATCGGAACCAAT CACCAGACGAACCGAGTGTGGAAGTATGTGCTGGCCTGAGCCTAAGCCTAAGCCAAACCCGAATC CCGAATCCAGAAGGACACGACTTGCACTGCGCTCCTGCATATCCT Right flanking sequence: Indices 19197662 -- 19198161 CCCAACTAGTTATCAGCAGAAACAGAAAGAGAACCACAATCAGAGCCGAATCAAATACAGATTAT AGCGATCCTAAGCCTAAGCAGAGCCCACACACCAAGTACAGTTTAACGTGACCAGTTGTCAGATC AATAGAGAATAGTCAGTGCTTAAGTAATGTACAAGTTAAGTATGTAAATTGCTTGGAAACAATAC CACAACAAACATAACCTCAGACTCTTATGTTTTGCACTTTAATGAGCAAACAAAAACGAAATGAA AACGAAATTACAAAGCAGCTTAAATAGTACATATACTTAAATGTAATAGTTACGCGTAGGCACTA ACTAGGCACGAATGTGAGGATGTGGGGACGCGAGCATGGATAACCGATTTCGCAGATAACCGGGG GCAACCAGCGCATATAACATACTTGTGTATCATATTGTAACCTATATCAAATATATAATCGTATC TGTATCTTATCAACTTATCGTAGCCCATGTAAATTATGTACGTAA Found at i:19198235 original size:9 final size:9 Alignment explanation
Indices: 19198215--19198235 Score: 28 Period size: 9 Copynumber: 2.3 Consensus size: 9 19198205 CTCTGGGGAC * 19198215 TCAGATGCT 1 TCACATGCT * 19198224 TCACATGGT 1 TCACATGCT 19198233 TCA 1 TCA 19198236 GTTTGAATGA Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33 Consensus pattern (9 bp): TCACATGCT Left flanking sequence: Indices 19197715 -- 19198214 AATACAGATTATAGCGATCCTAAGCCTAAGCAGAGCCCACACACCAAGTACAGTTTAACGTGACC AGTTGTCAGATCAATAGAGAATAGTCAGTGCTTAAGTAATGTACAAGTTAAGTATGTAAATTGCT TGGAAACAATACCACAACAAACATAACCTCAGACTCTTATGTTTTGCACTTTAATGAGCAAACAA AAACGAAATGAAAACGAAATTACAAAGCAGCTTAAATAGTACATATACTTAAATGTAATAGTTAC GCGTAGGCACTAACTAGGCACGAATGTGAGGATGTGGGGACGCGAGCATGGATAACCGATTTCGC AGATAACCGGGGGCAACCAGCGCATATAACATACTTGTGTATCATATTGTAACCTATATCAAATA TATAATCGTATCTGTATCTTATCAACTTATCGTAGCCCATGTAAATTATGTACGTAATAAACTGT TGTTGTTGTGACGTGAACGCCAAAAGTGAGCAGGACTCTGGGGAC Right flanking sequence: Indices 19198236 -- 19198735 GTTTGAATGACTATATCCCGCTAAGGGAAGGGAATGTTGACTCTCATACATATGATACATAGGGC TATGAAACGGAAGTGGTAAATCTATACCTTTCTTGCTAATTTCAGACTTAAATTGAAAGGAGCGA CACGTTTGCATGGCAAACAATATACAATTAGTGGAAAGATCTAAGCACAATTTAAATATAACCAA ATATAAATAGAAAACTTTAACACATATAAAAATAAAAATTGTTTGGCAATGCACGAGCTGTCAAG AGGAGCCCAGCCAGTGCCTGGCGAATGCGATAGCCTCATTTAGGTGGATTAGCCATTCCGAGAGC TCCGCTTGCGTATCGGCAGCAAAGAAGACTCTCCCCGATTCGCAATCAGAATTCCTTCCTTGCAG CAGAAAACTTCTCGCCCGAGCACACAACTCCCGGGGGGCTGCAGCTATCAGGGATTGTCCGAGTC CAGGCAACTCCAGCGTGAAAATCGGGATATCACTTTCCAGATTAT Found at i:19205463 original size:7 final size:7 Alignment explanation
Indices: 19205451--19205464 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 19205441 CAGCGAAAGA 19205451 GAGAGAG 1 GAGAGAG 19205458 GAGAGAG 1 GAGAGAG 19205465 TGCATAACAG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00 Consensus pattern (7 bp): GAGAGAG Left flanking sequence: Indices 19204951 -- 19205450 ATTCTGGTTGATTAGGTCCGCATCCGTGGTTCTGCGGACTCGGGGAAGTTGTCGGGACATGTTGA TGTGGTTATTGTTGGTCTCGCAGTCGCGACTTTGAGTGGACACACGGCGAATGCGGCGTGCCCTA AACTCGTCGATGCACTCCTGCAAACTGAACGACGATGTGGAACCAGACTCGGCGGAATCCTCCTC CTCCTCCTCCCCCTCTTCTTCATCAACTAGAACATGTTTGGAGAACTTTGAGCCTACAAAAGTCT GGAGGCCAATATGCTGTTCATTTGCACTTGTGATTAAATAGCGATTTAATGCTTACGGTGGCCAT TTTGCAGTCTATGTATTTATGGAGCTGATTAGACCAGCTGCATGTGCTCCACTTTTACACGTTGC ACGCTTTCTACTCCGCTTCTACTTCGTGTTTTTCCAATCAAATGAAAAGCGACGCCTCGCCTGCA TTTTTGTTTTCCGCTTTGTGCCGCTTCTTCTTTATCAGCGAAAGA Right flanking sequence: Indices 19205465 -- 19205964 TGCATAACAGCCCTGTCTTGCGTCAGAGATTGGGCAATTGGCTGGTATAACTCAGGCAGCACTAT ATTCATATGCTTGAAATTGTTATTATTTATACAATTGTTCAAATGGGCTTTACTATTTATTATTT AATTCAGCGCGGAATAGGTTCATATTTAAAAGAGGATGTGCTAGAGATTAATTATGTTCCAATGT AAGCTGGGGTTATAGGGGTTATAGCTATAAAACATAATGTTTCTAGCTAACTCGTCATCTCTGGT CAGAGAGAATCAGCTGTTTGCGGCATGCTATTACGTCGTCTCTTATTTGGAATTGTAAAAAATAG TTAAAAATTGTTTTGAATTAAAAACAAATACAGAATGTCAAACAGCCACTTGTTCTTGAAGTCCG GCTTCCCCCGTGCACCCCTGCAAAATGGATTGGGACGCTATGTTTGTCAGCTCCAGCGGATCACC CTGAAGTTCTGCAAGAATAATGGATCCAGCAGAGGCATGCGGTAA Found at i:19205593 original size:7 final size:7 Alignment explanation
Indices: 19205578--19205595 Score: 29 Period size: 7 Copynumber: 2.6 Consensus size: 7 19205568 TCAAATGGGC 19205578 TTTACTA 1 TTTACTA * 19205585 TTTATTA 1 TTTACTA 19205592 TTTA 1 TTTA 19205596 ATTCAGCGCG Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.28, C:0.06, G:0.00, T:0.67 Consensus pattern (7 bp): TTTACTA Left flanking sequence: Indices 19205078 -- 19205577 CTAAACTCGTCGATGCACTCCTGCAAACTGAACGACGATGTGGAACCAGACTCGGCGGAATCCTC CTCCTCCTCCTCCCCCTCTTCTTCATCAACTAGAACATGTTTGGAGAACTTTGAGCCTACAAAAG TCTGGAGGCCAATATGCTGTTCATTTGCACTTGTGATTAAATAGCGATTTAATGCTTACGGTGGC CATTTTGCAGTCTATGTATTTATGGAGCTGATTAGACCAGCTGCATGTGCTCCACTTTTACACGT TGCACGCTTTCTACTCCGCTTCTACTTCGTGTTTTTCCAATCAAATGAAAAGCGACGCCTCGCCT GCATTTTTGTTTTCCGCTTTGTGCCGCTTCTTCTTTATCAGCGAAAGAGAGAGAGGAGAGAGTGC ATAACAGCCCTGTCTTGCGTCAGAGATTGGGCAATTGGCTGGTATAACTCAGGCAGCACTATATT CATATGCTTGAAATTGTTATTATTTATACAATTGTTCAAATGGGC Right flanking sequence: Indices 19205596 -- 19206095 ATTCAGCGCGGAATAGGTTCATATTTAAAAGAGGATGTGCTAGAGATTAATTATGTTCCAATGTA AGCTGGGGTTATAGGGGTTATAGCTATAAAACATAATGTTTCTAGCTAACTCGTCATCTCTGGTC AGAGAGAATCAGCTGTTTGCGGCATGCTATTACGTCGTCTCTTATTTGGAATTGTAAAAAATAGT TAAAAATTGTTTTGAATTAAAAACAAATACAGAATGTCAAACAGCCACTTGTTCTTGAAGTCCGG CTTCCCCCGTGCACCCCTGCAAAATGGATTGGGACGCTATGTTTGTCAGCTCCAGCGGATCACCC TGAAGTTCTGCAAGAATAATGGATCCAGCAGAGGCATGCGGTAAGCAAAATCCTTAAATGTTTAC ATATAAAGTAAAATTAATCATACGAAACGTTCAATAGCGACTTCATTGAGAATCACTTGCTGGAC TTTGCCAAAGAGAATCCCGGGATTGTGGTCTATGTGAAGCCCAGG Found at i:19205679 original size:9 final size:9 Alignment explanation
Indices: 19205665--19205683 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 19205655 AATGTAAGCT 19205665 GGGGTTATA 1 GGGGTTATA 19205674 GGGGTTATA 1 GGGGTTATA 19205683 G 1 G 19205684 CTATAAAACA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.21, C:0.00, G:0.47, T:0.32 Consensus pattern (9 bp): GGGGTTATA Left flanking sequence: Indices 19205165 -- 19205664 TCATCAACTAGAACATGTTTGGAGAACTTTGAGCCTACAAAAGTCTGGAGGCCAATATGCTGTTC ATTTGCACTTGTGATTAAATAGCGATTTAATGCTTACGGTGGCCATTTTGCAGTCTATGTATTTA TGGAGCTGATTAGACCAGCTGCATGTGCTCCACTTTTACACGTTGCACGCTTTCTACTCCGCTTC TACTTCGTGTTTTTCCAATCAAATGAAAAGCGACGCCTCGCCTGCATTTTTGTTTTCCGCTTTGT GCCGCTTCTTCTTTATCAGCGAAAGAGAGAGAGGAGAGAGTGCATAACAGCCCTGTCTTGCGTCA GAGATTGGGCAATTGGCTGGTATAACTCAGGCAGCACTATATTCATATGCTTGAAATTGTTATTA TTTATACAATTGTTCAAATGGGCTTTACTATTTATTATTTAATTCAGCGCGGAATAGGTTCATAT TTAAAAGAGGATGTGCTAGAGATTAATTATGTTCCAATGTAAGCT Right flanking sequence: Indices 19205684 -- 19206183 CTATAAAACATAATGTTTCTAGCTAACTCGTCATCTCTGGTCAGAGAGAATCAGCTGTTTGCGGC ATGCTATTACGTCGTCTCTTATTTGGAATTGTAAAAAATAGTTAAAAATTGTTTTGAATTAAAAA CAAATACAGAATGTCAAACAGCCACTTGTTCTTGAAGTCCGGCTTCCCCCGTGCACCCCTGCAAA ATGGATTGGGACGCTATGTTTGTCAGCTCCAGCGGATCACCCTGAAGTTCTGCAAGAATAATGGA TCCAGCAGAGGCATGCGGTAAGCAAAATCCTTAAATGTTTACATATAAAGTAAAATTAATCATAC GAAACGTTCAATAGCGACTTCATTGAGAATCACTTGCTGGACTTTGCCAAAGAGAATCCCGGGAT TGTGGTCTATGTGAAGCCCAGGCGCCACCGCACGCCAGTTTTGGTGGGAGAGTACTGTACGTATA CATAATGTATAAGGATGCTCCCTAGAATACACTTTAAATATGTCA Found at i:19205797 original size:10 final size:10 Alignment explanation
Indices: 19205782--19205801 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 19205772 TGGAATTGTA 19205782 AAAAATAGTT 1 AAAAATAGTT * 19205792 AAAAATTGTT 1 AAAAATAGTT 19205802 TTGAATTAAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.55, C:0.00, G:0.10, T:0.35 Consensus pattern (10 bp): AAAAATAGTT Left flanking sequence: Indices 19205282 -- 19205781 GTCTATGTATTTATGGAGCTGATTAGACCAGCTGCATGTGCTCCACTTTTACACGTTGCACGCTT TCTACTCCGCTTCTACTTCGTGTTTTTCCAATCAAATGAAAAGCGACGCCTCGCCTGCATTTTTG TTTTCCGCTTTGTGCCGCTTCTTCTTTATCAGCGAAAGAGAGAGAGGAGAGAGTGCATAACAGCC CTGTCTTGCGTCAGAGATTGGGCAATTGGCTGGTATAACTCAGGCAGCACTATATTCATATGCTT GAAATTGTTATTATTTATACAATTGTTCAAATGGGCTTTACTATTTATTATTTAATTCAGCGCGG AATAGGTTCATATTTAAAAGAGGATGTGCTAGAGATTAATTATGTTCCAATGTAAGCTGGGGTTA TAGGGGTTATAGCTATAAAACATAATGTTTCTAGCTAACTCGTCATCTCTGGTCAGAGAGAATCA GCTGTTTGCGGCATGCTATTACGTCGTCTCTTATTTGGAATTGTA Right flanking sequence: Indices 19205802 -- 19206301 TTGAATTAAAAACAAATACAGAATGTCAAACAGCCACTTGTTCTTGAAGTCCGGCTTCCCCCGTG CACCCCTGCAAAATGGATTGGGACGCTATGTTTGTCAGCTCCAGCGGATCACCCTGAAGTTCTGC AAGAATAATGGATCCAGCAGAGGCATGCGGTAAGCAAAATCCTTAAATGTTTACATATAAAGTAA AATTAATCATACGAAACGTTCAATAGCGACTTCATTGAGAATCACTTGCTGGACTTTGCCAAAGA GAATCCCGGGATTGTGGTCTATGTGAAGCCCAGGCGCCACCGCACGCCAGTTTTGGTGGGAGAGT ACTGTACGTATACATAATGTATAAGGATGCTCCCTAGAATACACTTTAAATATGTCATCCTGTTC CAGTGAACGGCGAGCGCGAATGGATGAGCTGCAGGAACAGCACCCAAGAGGAGATCTCCAAGTGG ATTGACCTGCTAAAGACTCAAAACGGCAGCTCCAGCTCCCTGCGA Found at i:19206730 original size:10 final size:9 Alignment explanation
Indices: 19206708--19206732 Score: 32 Period size: 10 Copynumber: 2.6 Consensus size: 9 19206698 CTATGTTGCC 19206708 TTTCAGATAG 1 TTTC-GATAG 19206718 TTTCGATATG 1 TTTCGATA-G 19206728 TTTCG 1 TTTCG 19206733 GGTAGTTGGA Statistics Matches: 14, Mismatches: 0, Indels: 2 0.88 0.00 0.12 Matches are distributed among these distances: 9 4 0.29 10 10 0.71 ACGTcount: A:0.20, C:0.12, G:0.20, T:0.48 Consensus pattern (9 bp): TTTCGATAG Left flanking sequence: Indices 19206208 -- 19206707 CGAATGGATGAGCTGCAGGAACAGCACCCAAGAGGAGATCTCCAAGTGGATTGACCTGCTAAAGA CTCAAAACGGCAGCTCCAGCTCCCTGCGACTCCGGAAAATGTGGCATACCGAAGTGCCCTCCATC CAAGGCCCGTGGACGCCATTCCTGCTGCGTTCGCCGGATGCCCAAGGCCAGGCTTACCCCAGTGC CGAGGCGTCAAAGCCGCTGGATACGCCGCAAACTGCCACCGAGAAGCTCATCGAGTTGTTCCGGC AACAGCAACTGGAAGCTGGCGAGGAAGCACACGACGTGCTGAACAAAAAGCGGGCCGAGTGATAG GGATTAGGACTTTTTGGTAATTGTTGCTTTTATTTTTATAGTCAACATAGTTTTGTTGGTAAACA AATAAATATTTAAAATCTAAACCACTAAACTTGTGCCTCCATCGCTGGAATATCGAACCAAAAGT CATAGAAAAATGCAAACAACTTATTGTCCCCTTAGCTATGTTGCC Right flanking sequence: Indices 19206733 -- 19207232 GGTAGTTGGAATATCATTGTGGGAGTATCATAAATAATGCTTAAGGTTACCGACCCCTTGGAGGC TTGGAATACGAATACGAATACGAATACAAATACGAATAGAAATAGAAACAGGTTCTGGTGACGAC TTAGCATAACCAACTTAGCATCGACTAACGACTGCAGGTGAGATGGGTGGCTCCGATCGGCGGCG ATCGGTTAAGTACGCAAAGGTCTGACTAAGACGTTGATATAGTTACTTGCGGGTGCACACAGCGA GTTTGGGAGTATCAAAAAGTAGACCACGAATAAGTAATTGCTTATGTGCCGAAGTATTTTCCATC TAACACTTAAAACTATTGTACATATAGTTACTTTCACACGTACGATCAACGATCAACTTACACAC CGATAAAAGCATTTTGCTCGAGTTTACAATTTCCGTTTAGTGAATTCCTTTGGCGAAATGCATTT GGTTCTTCCTAATTATTACTACATAGACCTTGAGTACACGAATGT Found at i:19207111 original size:7 final size:7 Alignment explanation
Indices: 19207099--19207114 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 19207089 TTTCACACGT 19207099 ACGATCA 1 ACGATCA 19207106 ACGATCA 1 ACGATCA 19207113 AC 1 AC 19207115 TTACACACCG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.44, C:0.31, G:0.12, T:0.12 Consensus pattern (7 bp): ACGATCA Left flanking sequence: Indices 19206599 -- 19207098 ATAAATATTTAAAATCTAAACCACTAAACTTGTGCCTCCATCGCTGGAATATCGAACCAAAAGTC ATAGAAAAATGCAAACAACTTATTGTCCCCTTAGCTATGTTGCCTTTCAGATAGTTTCGATATGT TTCGGGTAGTTGGAATATCATTGTGGGAGTATCATAAATAATGCTTAAGGTTACCGACCCCTTGG AGGCTTGGAATACGAATACGAATACGAATACAAATACGAATAGAAATAGAAACAGGTTCTGGTGA CGACTTAGCATAACCAACTTAGCATCGACTAACGACTGCAGGTGAGATGGGTGGCTCCGATCGGC GGCGATCGGTTAAGTACGCAAAGGTCTGACTAAGACGTTGATATAGTTACTTGCGGGTGCACACA GCGAGTTTGGGAGTATCAAAAAGTAGACCACGAATAAGTAATTGCTTATGTGCCGAAGTATTTTC CATCTAACACTTAAAACTATTGTACATATAGTTACTTTCACACGT Right flanking sequence: Indices 19207115 -- 19207614 TTACACACCGATAAAAGCATTTTGCTCGAGTTTACAATTTCCGTTTAGTGAATTCCTTTGGCGAA ATGCATTTGGTTCTTCCTAATTATTACTACATAGACCTTGAGTACACGAATGTTAACGTTGTCAT CAAAATAATCAATACGGACGTCTTTACACTTTTGATATTGTTGTCAATGTTATATCACTAGTTGA ACTAAATTAAACTTCTCCTTAAACCCATGTCTTTTTTCCATTCTTTCCCAGCTCTGCTTCATCTC TGCCGCTGCTGGCCCATATTTATACCTAGATTTTGTATTTTGGTGGTGATGGTGGTGGTGGTGGT GTTGGTGGGTGAGCTTTAAGCAAGCGTTTTCCATTCGCAACTAGCTACTGGCTGCTTTTTGGTTT CGATATATAGCCTTTCGTTCATAGCACGCAATTGCAGCTCAGCTCGCTTTGCGAATCTCCTCAGA TATCTCCCGTTTCCATGGCTGCGTTTATGTCCGCCACAATCTTTC Found at i:19208350 original size:7 final size:7 Alignment explanation
Indices: 19208329--19208352 Score: 34 Period size: 7 Copynumber: 3.4 Consensus size: 7 19208319 AGCAACCAAG 19208329 GAAAACT 1 GAAAACT * 19208336 TAAAACT 1 GAAAACT * 19208343 GAACACT 1 GAAAACT 19208350 GAA 1 GAA 19208353 TGGTGGCAAC Statistics Matches: 14, Mismatches: 3, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 7 14 1.00 ACGTcount: A:0.54, C:0.17, G:0.12, T:0.17 Consensus pattern (7 bp): GAAAACT Left flanking sequence: Indices 19207829 -- 19208328 CAGCTGCGTGTTCTGCAACAAAAAAAAATCATAATAACATGTAGTTAAGGAGTAGCATTTAAGAC TCACTTGAAACTTTCTCTTAAAGAGCTCCGCCTTCTGCAGCTCCTCGTCGCTGAACTGATTGTTC CGGTGGAGCACACCGATCTTGATCACAATCTTGATGATGTTCTTGATCAGCTTCTCCGCCTTGGC CTTGTTCCCCGTGTGCATCTTGCAGAGCCTGTAGAGGTTGTCCAGCAGCGACGCCGTCGTGCCAT CGATGAAGGTCTTGGCGATGTTTTTTGTGGCCATGCGTGAGAGGATCTTCTTCTGCGCCCGCAGC CCGATATCGTGCGACTTGAAGACATTGTCCGCCATGACTAAAGCGGATGGGAGGGGTGGGATTGG AATTCAGATTCAGACATTATTATCGCTGCATATTCATTGACTAAAGCATTGTGGCAAAGAAATAC GAGCAGTACGAGCAAACAAAACGGAGCAACAACTCAGCAACCAAG Right flanking sequence: Indices 19208353 -- 19208852 TGGTGGCAACTGAAAAGCAAATCAGCTCCGCTCTTCTCCGCGGTTTACCTTCCAAGTTCCAGTAG TCGACGCTCCACAGCAGCAGACATTGTCGAAGCCCGGCCACCGACATCGCGACTATATATCACAC ATATATTACACCGATTCCAGTTGCAAGCATTGATAAGGGAATTATAGACAGAGATATAAAAACAT GAATGATTGGGCCATGTACATCAGCGCCGTATCTTTAGATAAAGGAAACCTGGTTCTTTCTTCGC TGTGCTTCTGTGTTTCTTTGTGCTTTACGTGAAGTGGGCAATAAAACAGTCTGTGTGGCCTACGT TTAACTACAATGAGTCACTCAAATGCAATTACTTTTACCTATAGTGCTGGGAACTGAAACATTGG AGGAGAGTCCTGTAGGACTGAAGTCTGTTTAGACTAATAAATGGAATCAACTAACATAAGTCACA TTTCTATTTAAAGAACAAAACAAAACGATTAATGTACGCACAACT Found at i:19208629 original size:8 final size:8 Alignment explanation
Indices: 19208612--19208633 Score: 30 Period size: 8 Copynumber: 2.8 Consensus size: 8 19208602 TCTTTCTTCG * 19208612 CTGTGCTT 1 CTGTGTTT 19208620 CTGTGTTT 1 CTGTGTTT * 19208628 CTTTGT 1 CTGTGT 19208634 GCTTTACGTG Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 8 12 1.00 ACGTcount: A:0.00, C:0.18, G:0.23, T:0.59 Consensus pattern (8 bp): CTGTGTTT Left flanking sequence: Indices 19208112 -- 19208611 TTTGTGGCCATGCGTGAGAGGATCTTCTTCTGCGCCCGCAGCCCGATATCGTGCGACTTGAAGAC ATTGTCCGCCATGACTAAAGCGGATGGGAGGGGTGGGATTGGAATTCAGATTCAGACATTATTAT CGCTGCATATTCATTGACTAAAGCATTGTGGCAAAGAAATACGAGCAGTACGAGCAAACAAAACG GAGCAACAACTCAGCAACCAAGGAAAACTTAAAACTGAACACTGAATGGTGGCAACTGAAAAGCA AATCAGCTCCGCTCTTCTCCGCGGTTTACCTTCCAAGTTCCAGTAGTCGACGCTCCACAGCAGCA GACATTGTCGAAGCCCGGCCACCGACATCGCGACTATATATCACACATATATTACACCGATTCCA GTTGCAAGCATTGATAAGGGAATTATAGACAGAGATATAAAAACATGAATGATTGGGCCATGTAC ATCAGCGCCGTATCTTTAGATAAAGGAAACCTGGTTCTTTCTTCG Right flanking sequence: Indices 19208634 -- 19209133 GCTTTACGTGAAGTGGGCAATAAAACAGTCTGTGTGGCCTACGTTTAACTACAATGAGTCACTCA AATGCAATTACTTTTACCTATAGTGCTGGGAACTGAAACATTGGAGGAGAGTCCTGTAGGACTGA AGTCTGTTTAGACTAATAAATGGAATCAACTAACATAAGTCACATTTCTATTTAAAGAACAAAAC AAAACGATTAATGTACGCACAACTTTATTTGTAACGAATAATTTCTTATCGAGTGTTCGTCACAA GCTTTTAACAAACAAAACAGGAATCTAACGATAATAAGACATTCTGGGGAATTCGAATTGGGTTA TCATCGTAAACACAACATAAAACGAATAAATTTGATATAAGGAATTTAATGTACAGTCAAAGTTA GAGCTCCGCTGCTCCACAACTTTGCTGCTTTCCACACACAGATATAGGAATGCTGCCGTATTAAT AATGGATGACCAACTGCGCCCCTCTGACCGTATCTATAAGGTCGT Found at i:19209764 original size:8 final size:8 Alignment explanation
Indices: 19209751--19209769 Score: 38 Period size: 8 Copynumber: 2.4 Consensus size: 8 19209741 TTGAATCGAA 19209751 TCCTTGAG 1 TCCTTGAG 19209759 TCCTTGAG 1 TCCTTGAG 19209767 TCC 1 TCC 19209770 AAGTATGTGT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.11, C:0.32, G:0.21, T:0.37 Consensus pattern (8 bp): TCCTTGAG Left flanking sequence: Indices 19209251 -- 19209750 ACCGCTGGCGGGTCAACAGAGTTCAGACACACATAGGTATTAACTAGAAGTCGTGACTAAGCCTA ATCTGGAGCAGGGCATCCCTGGTTGCTAATTTAACTAAGTGAATGCCAGTTCCAGTTAGATAACG CCCGGCAATAGAACCGTGTCAGGACACGGACTGCTCCAAATGGCTAAGGTCACGCGAAGTGCAAT AAAAGAAGGCCTATCCCTTCAAAGGAACGGAGTGTGGGTCCCCCAAGGACGCCAGTGGAGTGCGG AAGTGCGCTACAGCCGAAACCACAGAGTACTTGAGTTCGTTGGGCCATTCTTCTCCTGGCTTTCC TGTTTGTCCTGCATTTGCGTGTTCCGTTTTCGCAGCAGGAGGGTTTCTTTACCTTCTGGGTGTTA TTGATTGCAACAGGCTGTGTGTGATGCCCGCCCCCTTGAAACCAGAATAGAAATCCAATTTGGCG CTCACCTGTTTTTGTTTTTGTTGTTGCTGCAGTCCTTGAATCGAA Right flanking sequence: Indices 19209770 -- 19210269 AAGTATGTGTGTGTATGGGTGTAATGTGTGCTTGATGACCAGTGTCCGCAAATCGAAGTGCTAGC GAAAGCAACTGAAAGGGGTTGGCTGCATTAAAGCCCGCGAACTGCGTACAATTTGCAGCTAAATT TATGCGCAACTTCGATTAAACATAAAACAACTCAGCGAACAGCAACAAAAACAAAATATCAGCCT GTGAGACCAGCTGCTTGTAGCAACCAAATGTTAGACTGAAACGAATCAATCTTCCGTGGCTAGTA TTATTTTCACTTTTGGCGGTTCTCCAGTCTTTCGCAACAGAATGCGTTTACTTCCCATCTGAGCA CGGTCACACTGCCCAAGAGTCCAGCTGCGTCGTTGAAAAATATTTTCGATGCCTCGAAGGTTGAT TTATTTCAGAGGAAATAGCAGGAAATAAAGTTGAAAACGCAGATTACGAGCAGCAGCCGCCAAGA GGAGTGCACAATGAACATTTACAACAAGTTGCGGGCCAGGGAGCA Found at i:19209791 original size:10 final size:10 Alignment explanation
Indices: 19209772--19209791 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 19209762 TTGAGTCCAA * 19209772 GTATGTGTGT 1 GTATGGGTGT 19209782 GTATGGGTGT 1 GTATGGGTGT 19209792 AATGTGTGCT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.10, C:0.00, G:0.45, T:0.45 Consensus pattern (10 bp): GTATGGGTGT Left flanking sequence: Indices 19209272 -- 19209771 TTCAGACACACATAGGTATTAACTAGAAGTCGTGACTAAGCCTAATCTGGAGCAGGGCATCCCTG GTTGCTAATTTAACTAAGTGAATGCCAGTTCCAGTTAGATAACGCCCGGCAATAGAACCGTGTCA GGACACGGACTGCTCCAAATGGCTAAGGTCACGCGAAGTGCAATAAAAGAAGGCCTATCCCTTCA AAGGAACGGAGTGTGGGTCCCCCAAGGACGCCAGTGGAGTGCGGAAGTGCGCTACAGCCGAAACC ACAGAGTACTTGAGTTCGTTGGGCCATTCTTCTCCTGGCTTTCCTGTTTGTCCTGCATTTGCGTG TTCCGTTTTCGCAGCAGGAGGGTTTCTTTACCTTCTGGGTGTTATTGATTGCAACAGGCTGTGTG TGATGCCCGCCCCCTTGAAACCAGAATAGAAATCCAATTTGGCGCTCACCTGTTTTTGTTTTTGT TGTTGCTGCAGTCCTTGAATCGAATCCTTGAGTCCTTGAGTCCAA Right flanking sequence: Indices 19209792 -- 19210291 AATGTGTGCTTGATGACCAGTGTCCGCAAATCGAAGTGCTAGCGAAAGCAACTGAAAGGGGTTGG CTGCATTAAAGCCCGCGAACTGCGTACAATTTGCAGCTAAATTTATGCGCAACTTCGATTAAACA TAAAACAACTCAGCGAACAGCAACAAAAACAAAATATCAGCCTGTGAGACCAGCTGCTTGTAGCA ACCAAATGTTAGACTGAAACGAATCAATCTTCCGTGGCTAGTATTATTTTCACTTTTGGCGGTTC TCCAGTCTTTCGCAACAGAATGCGTTTACTTCCCATCTGAGCACGGTCACACTGCCCAAGAGTCC AGCTGCGTCGTTGAAAAATATTTTCGATGCCTCGAAGGTTGATTTATTTCAGAGGAAATAGCAGG AAATAAAGTTGAAAACGCAGATTACGAGCAGCAGCCGCCAAGAGGAGTGCACAATGAACATTTAC AACAAGTTGCGGGCCAGGGAGCATGGCTACGGTGAGTCTTTCGCT Found at i:19210549 original size:7 final size:7 Alignment explanation
Indices: 19210533--19210549 Score: 27 Period size: 6 Copynumber: 2.6 Consensus size: 7 19210523 TCTCCTCTGG 19210533 TTTTCGT 1 TTTTCGT 19210540 TTTTC-T 1 TTTTCGT 19210546 TTTT 1 TTTT 19210550 AGGCAATGAG Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 6 5 0.50 7 5 0.50 ACGTcount: A:0.00, C:0.12, G:0.06, T:0.82 Consensus pattern (7 bp): TTTTCGT Left flanking sequence: Indices 19210033 -- 19210532 TTTTCACTTTTGGCGGTTCTCCAGTCTTTCGCAACAGAATGCGTTTACTTCCCATCTGAGCACGG TCACACTGCCCAAGAGTCCAGCTGCGTCGTTGAAAAATATTTTCGATGCCTCGAAGGTTGATTTA TTTCAGAGGAAATAGCAGGAAATAAAGTTGAAAACGCAGATTACGAGCAGCAGCCGCCAAGAGGA GTGCACAATGAACATTTACAACAAGTTGCGGGCCAGGGAGCATGGCTACGGTGAGTCTTTCGCTT GGCGGGAGAATCTCACTTTTGGCGCTCGAATTTCCTGCGATCAAAGGTGTTGATTTTTAAAAGGT TTCAATGGGTTTTCCTGGCCATCTGGTCAATGTGCATCCTGCACGGCCACCTGACCACAGAGCAT TGCCTAAGGGGTGAAGAAACCCGACTAGTTGCTCCACTGGAAACTGCTGATCGTGCAGAAGTTCC GTGGAAAACAAAGCCACGGCACTATTTTCATGGTTTCTCCTCTGG Right flanking sequence: Indices 19210550 -- 19211049 AGGCAATGAGAGGACCTACGACTTCGCCCTGCGCCGCCTTTCCGTGGCCAAGGAGGACAGCTGGC GGGGCATCGCGCCGGCCAACTACTGCCCAGACTTCAATCCGGAACCGCCGATCTTCTCCGCCAAG TTCGCCAACTGCGATGGCTATCGGCACATCCTGGCGATCGCCAACGAGGACGGCAAGATCACGCT GCAGGACACCACCCAGCGCAACCACCAGCCGGAGGAGCAGTCCCTGGTGGGCCCGCAGTGCCACT TCAACGCCGTTTTCGATCTGGAATGGGCACCCGGCCAGATGCGCTTCGTCTCCGCCTCGGGCGAT CACACTGCCAGACTGTGGGAGGTGGCGGGCTCCGGCATACGCGGCCTGAACTCCTATGTGGGTCA CACAAGGTCCGTCAAGTCGGCGGCCTTTAAGCGCACCGATCCCGCTGTCTTCGCCACCGGCGGCC GTGATGGCGCCATTCTCATCTGGGACATCAGGGCCAATCTCAATA Found at i:19211731 original size:9 final size:10 Alignment explanation
Indices: 19211712--19211731 Score: 33 Period size: 9 Copynumber: 2.1 Consensus size: 10 19211702 GGATGGCCTC 19211712 AGCGAGGCGG 1 AGCGAGGCGG 19211722 AGCG-GGCGG 1 AGCGAGGCGG 19211731 A 1 A 19211732 AAAGTACCGA Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 9 6 0.60 10 4 0.40 ACGTcount: A:0.20, C:0.20, G:0.60, T:0.00 Consensus pattern (10 bp): AGCGAGGCGG Left flanking sequence: Indices 19211212 -- 19211711 TGATCTCCTGTGGTGCCGGTGACGGAGTCATCAAGGTGTGGGACCTGCGGCGCAACTACACAGCC TACAAAAAGGAGCCACTGCCCAGGCACAAGCTGCCATATGCCGGCAGCTCCACCTTCCGTGGATT CACCAACCTCATTGTGGACGCGTCAGGCACGAGGCTGTATGCCAACTGCATGGACAACACCATCT ATTGCTACAATCTGGCCTCCTACTCGCAGCGCCCGCTGGCGTGCTACAAGGGACTCCTTAACTCC ACGTTCTACATCAAATCCTGCCTCAGCCCGGACGGCAAGTATCTGCTGAGCGGAAGCAGCGACGA GCGGGCTTACATCTGGAACCTGGACCACGCCGAGGAGCCGCTCGTTGCACTGGCCGGACACACGG TGGAGGTAACCTGCGTGGCCTGGGGCTCCAGCCACGATTGCCCCATTGTCACGTGCAGCGATGAT GCGCGTCACAAAATCTGGCGGATTGGACCCGACCTGGATGGCCTC Right flanking sequence: Indices 19211732 -- 19212231 AAAGTACCGAGGAACTGCCTCCTACGTCAGGGAGTTCGGCAAGAAGGCATTTGGTCCGTCTAGTG GAAATCACAAGTACAATCTTCGAGATCTGGAGTCCACGCCAAGATCTCTGAAGCGCCTTATGGAT CAAAATGAAAGGACGCCAGGTTCCGTGGAAAAGACGACGACCAAGCGTTCGTTCCTGGAAATGCT GGGCGTAGCTGGCCAGGAGACGGAAGCCACAGAACAGCCCCAGAAACGGGCGAAGCCACTGGAGT CACGTGGAAGGCGGCTCTTTGGACCTTCTAGCCAGGAAACTGCTTGCAGGCACATACAACTTCAG TCCATAAACGAGGAAGATGCCTCGCCGAGCAAGAGACAAAAGGAGAACTCTGCCGCGGAGGATGT CTCACCACTGCACAAGCTTCTCAGCACACCAAGTCATTCCCCTTTGAGTGAGAATGTCAACCATG TGTACACCTCCCCGCCAACCACGTCAGCGGCAGCAGCAGCGGTGG Found at i:19213164 original size:9 final size:9 Alignment explanation
Indices: 19213146--19213164 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 19213136 GCAGCTTTTT * 19213146 CTGTTGCTC 1 CTGCTGCTC 19213155 CTGCTGCTC 1 CTGCTGCTC 19213164 C 1 C 19213165 CTCTTGGCCG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.00, C:0.42, G:0.21, T:0.37 Consensus pattern (9 bp): CTGCTGCTC Left flanking sequence: Indices 19212646 -- 19213145 CGACGCTCCTGCGATTCTTTAGCATTCAGAGAAGTAGCAGTGTGCCGGCGGAGGAAACAACGACA ACGAATGCGGCTCCCTCCTCTTCTGATCCCCATCCCCCGGCAGTGACTGCGCCCGCAGCCACGCC CCTCAGCATGCGCACGCCCACGACGGCGGTGGGCAGCGATTGACGCGGAGCCTCGAGCCACAGCA CCATTATTGCACTTGTAGTTTTAAGCGGACATTGTTTAAGTTATTTTATGTAGATAGTAGGTTGC ATCTATCGCGGGACGAGTTGGTAACCAACTCCCCGCCCTCTGTACAGAGCCAAAAGATACGAAAG ACTAACGTACCCGAATAAAAGTAACTCCATTTTAAAGCTGCCTTGATTGATTCTCTAAAAACTAA CTCGTTTAATGTACTGTTTATTCAATTTTTTTTTTGGCATAATCAAAACGGTTTATATGTGGCAC TCATGGCTAACAAGTGGCACTCAGACCATTTTACTGCAGCTTTTT Right flanking sequence: Indices 19213165 -- 19213664 CTCTTGGCCGCATTATTAATCCGCATGGTCTGGACAAGCTGCTTGGCCACCCCAGCGAGCAGTAT GATGTGGGTGAAGTGAAGGGCAGCGCTGGAGAAGTTCGTACTGGGATAGGTGTTCCAGCAGTACT CAATCAGTCCGAGGATCAGGCAGCGCACGCCCAGCGAGTACGGCGTCGACCAGGCCAAATAGGGT AGCGAGTGGAAGTACCAGACGTAGAACTGATAGTGCAAGGATCGGGAGCAGGCCACGCCCACCAG GTTGCACAGGAAGAACGGCAGCAGGGCCAGCTGGGTGCAGCGATCGAAGTGGATGCCATAGCGTT CCGGTTCCGCCTGTGCGGGTGCCGGAGTGGCCTTTCCTCCAGACGCCTTCTGCAGGCTCTTCTCG AAGGCCTTCAGGAAGGATTGCTGCTCGGTTGTAAACTTCTTCTGGTCCTTGTCCTTGTCCTTTTC CACTTTCTTTGGTCTTTTCTGCGCGTTCAGCTCGAGGTTCTGCTG Found at i:19213769 original size:9 final size:9 Alignment explanation
Indices: 19213749--19213769 Score: 28 Period size: 9 Copynumber: 2.3 Consensus size: 9 19213739 TGGCGAAGGC * 19213749 CAGCAGGAG 1 CAGCAGAAG * 19213758 CAGCAGATG 1 CAGCAGAAG 19213767 CAG 1 CAG 19213770 GCCCAAAAGC Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.33, C:0.24, G:0.38, T:0.05 Consensus pattern (9 bp): CAGCAGAAG Left flanking sequence: Indices 19213249 -- 19213748 GCAGCGCTGGAGAAGTTCGTACTGGGATAGGTGTTCCAGCAGTACTCAATCAGTCCGAGGATCAG GCAGCGCACGCCCAGCGAGTACGGCGTCGACCAGGCCAAATAGGGTAGCGAGTGGAAGTACCAGA CGTAGAACTGATAGTGCAAGGATCGGGAGCAGGCCACGCCCACCAGGTTGCACAGGAAGAACGGC AGCAGGGCCAGCTGGGTGCAGCGATCGAAGTGGATGCCATAGCGTTCCGGTTCCGCCTGTGCGGG TGCCGGAGTGGCCTTTCCTCCAGACGCCTTCTGCAGGCTCTTCTCGAAGGCCTTCAGGAAGGATT GCTGCTCGGTTGTAAACTTCTTCTGGTCCTTGTCCTTGTCCTTTTCCACTTTCTTTGGTCTTTTC TGCGCGTTCAGCTCGAGGTTCTGCTGGGCTATTTGCGGCTGCAGCTGATCCTCAATACGGCGCAG GCGCACGTAGCTCTGGAAAAAGGTCCAAGTGGGCTTGGCGAAGGC Right flanking sequence: Indices 19213770 -- 19214269 GCCCAAAAGCGAAACGTGGAAGGTGCGGTTCTCGAACAGATCTCTGCTCAGGAAGCGATAGTTGA CCGTCCACTTGTGCTCGAAGATGCGTCCCAAATCAAAGCTGCCCCGCAGATACTCCACAGGATGG GTGAGCAGGAAAGGAGCGCCCAGCAGCAGTTGTATCACTCCGCAGACAGCCAGCTGCAGGATCGT CCGCAGAAGTCCCAGGTTGGCCAAGTAGAACAGCAAGAGCGCAGGCGCAAACAGCAGGATGTTCA TCTTAACGCCCACCGCCAAGCTGAAGAAGGTGCTACCCAGGGTCCACCTTCTGTCCAGGAACAAA TTGAGTGCGGCATAGAGGAGCAGCACTGCCACCGGATCGTTGAACAGTCGCAGCACGTATATCGA GTGGATCCGATACGACGTGAAGGCACTGAGCACTAGCACATACGGCGGCACCTTTCTGCTCTTCG AGTACAGCCTCAGCACCAGGGCCAGCTGGAGCAGGTAGATCCCGG Found at i:19214395 original size:7 final size:7 Alignment explanation
Indices: 19214383--19214397 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 19214373 GTCGCCTAGG 19214383 AAATCGA 1 AAATCGA 19214390 AAATCGA 1 AAATCGA 19214397 A 1 A 19214398 GAATTTCAAT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.60, C:0.13, G:0.13, T:0.13 Consensus pattern (7 bp): AAATCGA Left flanking sequence: Indices 19213883 -- 19214382 GATACTCCACAGGATGGGTGAGCAGGAAAGGAGCGCCCAGCAGCAGTTGTATCACTCCGCAGACA GCCAGCTGCAGGATCGTCCGCAGAAGTCCCAGGTTGGCCAAGTAGAACAGCAAGAGCGCAGGCGC AAACAGCAGGATGTTCATCTTAACGCCCACCGCCAAGCTGAAGAAGGTGCTACCCAGGGTCCACC TTCTGTCCAGGAACAAATTGAGTGCGGCATAGAGGAGCAGCACTGCCACCGGATCGTTGAACAGT CGCAGCACGTATATCGAGTGGATCCGATACGACGTGAAGGCACTGAGCACTAGCACATACGGCGG CACCTTTCTGCTCTTCGAGTACAGCCTCAGCACCAGGGCCAGCTGGAGCAGGTAGATCCCGGCGA AGATGTACTGCGCCAGGCGAACGTTCGTTCCGTGGGACGTGACGTAGTAGAGAGCCGAGTAGATG TACACGAAGGCGGCTGGATACACAAGAGGTCCTGTGTCGCCTAGG Right flanking sequence: Indices 19214398 -- 19214897 GAATTTCAATTATCATAAATTAGATAGAAGGAATGCAATTAGTCATTGTTTTCATTCACTAAGCA GTTATTTCAGTCTGTTTGGGCCTGGGAAAACTATTATATCCATTGAGTTACACTTCATATTTATT TTAAAGGCAAAACTTTAGTTAACTTATTTAATATACGGCTTTTTTAACTTTAACGGTATATAACG ATATTTCATTCGCTTTCACGCCGGTTGGTATTTTCGCTCGCTACGCACGCGGTCACATTGAGCAA GTGCGAGTGAGAGAGAGAGAGACAGACATTCGTAGGACAGCATGGATGTTACGGCATGTTGTTGA AAAGCTGAAAATCTGATACTTTTATGGAAAAATGATGATTTCGTGTAAAAAATTATTCGTGTTCC GGCAGCTGCCGGCGGTGCGCCGTTGCCTAGCGGCAGCCGCGTTCTCCACGCCACGCGCGACCTCC TACCGAATCCTCTCCAGCGCCGGGAGCGGAAGTACCCGGGCAGAC Found at i:19214733 original size:8 final size:8 Alignment explanation
Indices: 19214720--19214738 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 19214710 GGCATGTTGT 19214720 TGAAAAGC 1 TGAAAAGC * 19214728 TGAAAATC 1 TGAAAAGC 19214736 TGA 1 TGA 19214739 TACTTTTATG Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.47, C:0.11, G:0.21, T:0.21 Consensus pattern (8 bp): TGAAAAGC Left flanking sequence: Indices 19214220 -- 19214719 CTTCGAGTACAGCCTCAGCACCAGGGCCAGCTGGAGCAGGTAGATCCCGGCGAAGATGTACTGCG CCAGGCGAACGTTCGTTCCGTGGGACGTGACGTAGTAGAGAGCCGAGTAGATGTACACGAAGGCG GCTGGATACACAAGAGGTCCTGTGTCGCCTAGGAAATCGAAAATCGAAGAATTTCAATTATCATA AATTAGATAGAAGGAATGCAATTAGTCATTGTTTTCATTCACTAAGCAGTTATTTCAGTCTGTTT GGGCCTGGGAAAACTATTATATCCATTGAGTTACACTTCATATTTATTTTAAAGGCAAAACTTTA GTTAACTTATTTAATATACGGCTTTTTTAACTTTAACGGTATATAACGATATTTCATTCGCTTTC ACGCCGGTTGGTATTTTCGCTCGCTACGCACGCGGTCACATTGAGCAAGTGCGAGTGAGAGAGAG AGAGACAGACATTCGTAGGACAGCATGGATGTTACGGCATGTTGT Right flanking sequence: Indices 19214739 -- 19215238 TACTTTTATGGAAAAATGATGATTTCGTGTAAAAAATTATTCGTGTTCCGGCAGCTGCCGGCGGT GCGCCGTTGCCTAGCGGCAGCCGCGTTCTCCACGCCACGCGCGACCTCCTACCGAATCCTCTCCA GCGCCGGGAGCGGAAGTACCCGGGCAGACGCACCCCAAGTGCGCCGCCTGCACACCACGCGCGAC CTCCTGGCCAAGGACTACTACGCCACGCTGGGCGTTGCCAAGAACGCCAACGGCAAGGACATCAA GAAAGCCTACTACCAGCTGGCCAAGAAGTACCATCCGGACACGAACAAGGAGGATCCGGATGCGG GCCGCAAGTTCCAGGAGGTCTCCGAGGCCTACGAAGTGCTCAGCGACGAGCAGAAGCGCCGTGAG TACGACACCTATGGCCAGACGGCGGAAAACATTGGTCGCCAGGGCGGCGGATTCCCTGGCGGAGG AGCCGGTGGCTTTGGCCCCGAGGGTTTCTCGCAGAGCTGGCAGTT Found at i:19215326 original size:9 final size:9 Alignment explanation
Indices: 19215309--19215327 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 19215299 AACGAACTCG 19215309 TTCGACGAC 1 TTCGACGAC * 19215318 TTCGCCGAC 1 TTCGACGAC 19215327 T 1 T 19215328 CCAAGTTCGG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.16, C:0.37, G:0.21, T:0.26 Consensus pattern (9 bp): TTCGACGAC Left flanking sequence: Indices 19214809 -- 19215308 GTTGCCTAGCGGCAGCCGCGTTCTCCACGCCACGCGCGACCTCCTACCGAATCCTCTCCAGCGCC GGGAGCGGAAGTACCCGGGCAGACGCACCCCAAGTGCGCCGCCTGCACACCACGCGCGACCTCCT GGCCAAGGACTACTACGCCACGCTGGGCGTTGCCAAGAACGCCAACGGCAAGGACATCAAGAAAG CCTACTACCAGCTGGCCAAGAAGTACCATCCGGACACGAACAAGGAGGATCCGGATGCGGGCCGC AAGTTCCAGGAGGTCTCCGAGGCCTACGAAGTGCTCAGCGACGAGCAGAAGCGCCGTGAGTACGA CACCTATGGCCAGACGGCGGAAAACATTGGTCGCCAGGGCGGCGGATTCCCTGGCGGAGGAGCCG GTGGCTTTGGCCCCGAGGGTTTCTCGCAGAGCTGGCAGTTCCGCTCGAGCATCGACCCCGAGGAG CTCTTCCGCAAGATCTTCGGCGAGGGCAACTTTCGAACGAACTCG Right flanking sequence: Indices 19215328 -- 19215827 CCAAGTTCGGATTCGGCCAGGCCCAGGAGATGGTCATGGACCTGACCTTTGCCCAGGCGGCGCGC GGCGTTAACAAGGATGTCAACGTCAACGTGGTGGACCAGTGCCCCAAGTGCGCCGGCACCAAGTG CGAGCCGGGCACCAAGCCAGGTCGCTGTCAGTACTGCAACGGCACCGGCTTCGAAACGGTGTCCA CTGGGCCCTTCGTAATGCGCTCCACTTGCCGCTACTGCCAGGGCACGCGGCAGCACATTAAGTAT CCGTGCAGCGAGTGCGAGGGCAAGGGCCGCACGGTCCAGCGCCGCAAGGTCACCGTGCCGGTGCC GGCTGGCATTGAGAACGGGCAAACGGTGCGAATGCAGGTGGGCAGCAAGGAGCTGTTCGTCACGT TCCGCGTGGAGCGGAGCGACTACTTCCGGCGCGAGGGCGCCGATGTGCACACGGACGCGGCCATA TCCCTGGCCCAGGCGGTGCTGGGCGGCACTGTGCGTGTCCAGGGC Found at i:19216063 original size:7 final size:7 Alignment explanation
Indices: 19216051--19216064 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 19216041 CAGATCCACG 19216051 GAATCGC 1 GAATCGC 19216058 GAATCGC 1 GAATCGC 19216065 AAAGACGGCA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.29, G:0.29, T:0.14 Consensus pattern (7 bp): GAATCGC Left flanking sequence: Indices 19215551 -- 19216050 CCGCTACTGCCAGGGCACGCGGCAGCACATTAAGTATCCGTGCAGCGAGTGCGAGGGCAAGGGCC GCACGGTCCAGCGCCGCAAGGTCACCGTGCCGGTGCCGGCTGGCATTGAGAACGGGCAAACGGTG CGAATGCAGGTGGGCAGCAAGGAGCTGTTCGTCACGTTCCGCGTGGAGCGGAGCGACTACTTCCG GCGCGAGGGCGCCGATGTGCACACGGACGCGGCCATATCCCTGGCCCAGGCGGTGCTGGGCGGCA CTGTGCGTGTCCAGGGCGTATACGAGGATCAGTGGATCAACGTGGAGCCGGGCACCTCGTCGCAC CACAAGATCATGCTGCGCGGCAAGGGTCTGAAACGCGTGAATGCCCACGGACACGGCGATCATTA CGTGCACGTCAAGATCACGGTGCCATCGGCAAAGAAGCTGGACAAGAAGCGACTGGCTCTGATCG AGGCGTACGCCGAGCTGGAGGAGGACACCCCCGGGCAGATCCACG Right flanking sequence: Indices 19216065 -- 19216564 AAAGACGGCAGTAAGCAAGCAACGTAAATAATCTCCCGATCTACCAATGCAATCTCTAAATGTAA CTTGGAGCTTGAATTCGTAGTTGAAATATACGTGCGTTCTATGTGCGAGCTTTATTAAATGATGG CGTCTTTCTCTCCCCTTCCCCATCTCTCGTTGCAGCGCAGGAGCGAGTGAGGAGCCAGGAGCGGG AGCAGCTGCTAAAGCCAGTGCAGCAGCCGCCGGATCAGGAGCCTCCAAGCCAGGACCAGGAGCAG AAAAAAGCGAAGGCAAAGACCAGTGGACGGACAACGAGAAAACCAAAGCGAAAGAAGGCGGCGGA TCCGGATCCGGACAAGGCGACGGCGGAGGCGGAGGCTTCATAAGCAAGATCAAGTCCATGTTCAA CTGACAGGCGTTGGCAACCCGATGGCCGATTCTGTTTTTTTAGTGTCTAAGTTAACGCACGTTAT TGTTGCTAATCTAAGTTCGGGCGGGAACCGGGGGAGTGTATTCCA Found at i:19217780 original size:9 final size:10 Alignment explanation
Indices: 19217759--19217785 Score: 40 Period size: 9 Copynumber: 2.8 Consensus size: 10 19217749 CAATAATTAA * 19217759 ATTTTTGGCC 1 ATTTTTTGCC 19217769 ATTTTTTG-C 1 ATTTTTTGCC 19217778 ATTTTTTG 1 ATTTTTTG 19217786 TAAGGGGTTA Statistics Matches: 16, Mismatches: 1, Indels: 1 0.89 0.06 0.06 Matches are distributed among these distances: 9 9 0.56 10 7 0.44 ACGTcount: A:0.11, C:0.11, G:0.15, T:0.63 Consensus pattern (10 bp): ATTTTTTGCC Left flanking sequence: Indices 19217259 -- 19217758 CCGACTTCTTGCGCCGCACCGCCGGACGGTGGCTGGCGGCCTTTGGCGGGGCCATTTCTGTGATA ACCGGCGAAAATTAATTAAAATTCAACTTGAACCGAAAAACAACCAGGGCGGCACTATCAAAATC AGCTGTTGCGCCTCCCATCGATAGCAGTCCAACTGGATTTTGCATGCTATCGATATTTTCCCAAT TTAAATTTGTAGTTCTAACAGCGAGCACCAGTGGCGTCTTCCGCTTCCGGTTGTTGCTTGGTTTT CAAGAAAAGAAAATTTAATTTTATCACGCTGAAAATGCTTTTAAATATTTGTAATTTAATTTTTA AAGTATATTTGGGTTGCTACCTAAATTATTGTGGCCAAAACACGAGTTTTCCAAGGAGGGCTACC TTCATAACTTGGCCAAAAAAAGTCGCACATTCAAAAAAATTACTGTTTTAGACTCCTAATGATCC AAACTAACTATCCCAATCACAATCTTGACGATTTTCAATAATTAA Right flanking sequence: Indices 19217786 -- 19218285 TAAGGGGTTACATCGTTAAAATTTGCAAAAAATTGACAAAAATTAAAATTTTCAAATTTGAATGG GAATCGATTAGGAATGTGAATACAAGTTCAACAAGCTATGACACTCAATATTTGGGCCATAAAAT CGATTGTTTTGGCCAAAATACGTATTTTTTGGTTGATTTAAGGGTTCACCTTCATAATTTGGCCA AAAAGAGTTAATGATTCAATACAGTACAATAGAAATATCATTATTTGAGGATTTGCTTGAATTTT ATTGAATAGCAATGAGTTTGACAATTGCATTTTGAAACACATCCACTGCTTTTAGTTCCTGCTGA GTATTTACAATTTGAATGGCTGCATTTTTCCTAGCCAGCTGGATGTTGTAAGGCCTGCGGGTGGA TTAAACCATAACATATATGTAGTAATTAGCAGAATTCCTACACGGCGAACGCTTCTATTCGGTCA AAATGGGTGGGCCCCATTTGGGGCGGGGGACCGGAACTGCAGGTG Found at