TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_3L assembled 2004-3-14 md5checksum:58b150ba3706a94f84f5242c20c22999 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 23771897 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Warning! 300 characters in sequence are not A, C, G, or T Found at i: i:10508268 original size:9 final size:9 Alignment explanation
Indices: 10508254--10508278 Score: 36 Period size: 9 Copynumber: 2.8 Consensus size: 9 10508244 CGAACAGGTA * 10508254 ACAAAAAAG 1 ACAAAAAAC 10508263 ACAAAAAAC 1 ACAAAAAAC * 10508272 CCAAAAA 1 ACAAAAA 10508279 GGCTGAATGA Statistics Matches: 14, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 9 14 1.00 ACGTcount: A:0.76, C:0.20, G:0.04, T:0.00 Consensus pattern (9 bp): ACAAAAAAC Left flanking sequence: Indices 10507754 -- 10508253 AGTACTGGGAACACAAGAAAAAAAAAGAAGAAAATCTCGCAGTAACGCCGAAGTTTGCAACTCTT TTGTCTGATGACAAAAGTTTGTTGTAGGCGCTGCGCGACTTTGACAATGAATTTAGCCTTAAGGC AGAGGCAAAACAAAGCCAAAGCCTGGTCGGGAGGCAAAATCCTGTTTTTGGACCAGGAATGAAGG AGAACTGGTTTTCGGGTTGTGGGTGTGGAACTAGAGTGCAGTCTCAGTCGACTACGTCATCAAGG CAACTGCTTGTTGTTTGTGTGTGCTTTTTTTTTAGCGCTTTTAGTATTTTAGGTTTTTCTTCTTT TTTTTTTGTATATTTCGCCTTTGTGGAGCGAGTACAATAAGGCAACTTGACTGGGCGCTGACAAA GCGAGATTGATGCCCATCTAGGGCATGTCTTGGTCGCATTCGGGGCGTTGATTATATTGATGGGT GGCCGGCAGGAGCAACTAGGCAGGCATCTCTGCCACGAACAGGTA Right flanking sequence: Indices 10508279 -- 10508778 GGCTGAATGAAAATGAATGAAAGTGGGGGCGGTATGCAAAGGAAAGCATTGAAAATGTTGAAAGA ATGGTGCATAAAGGGTGTTCTTGGTGTATATTTAGCACATGATGTAGATATAATTCTTTTAGGAG AATTAAAAACGATCTTCTATACATTATCTAAACTACCCAGATTATGAAATAGTTCATTACTAGAA TTTAGATATTAGCTCTTTTAATTAGAACTTTGTCTAAAATGTCAGATAATTAGGGTTCAAACTTA TAATTATTTTTTATAATATTTATCTTTAATGAGTGCTTATACTTTTAAATTAAAATCCCAACGTC ATCCCAAGAAGAATCCACTGTAATGACGGGCACTCAAATCTGGGATCATCCCAAATGAGAAAAGC CTTCTTTACAAAAAGCATACTTCTCATAACCATAGCTAAGAATTTTTTTTTTCGGCTAATTTGTG CTAATTACTTATTCCCTCTTCTCTTTGCAACTTTTTCATTACAGG Found at i:10508880 original size:9 final size:9 Alignment explanation
Indices: 10508863--10508881 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 10508853 TAGTAACACA * 10508863 AAAATATAT 1 AAAAAATAT 10508872 AAAAAATAT 1 AAAAAATAT 10508881 A 1 A 10508882 TATTCACGCC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26 Consensus pattern (9 bp): AAAAAATAT Left flanking sequence: Indices 10508363 -- 10508862 CTTGGTGTATATTTAGCACATGATGTAGATATAATTCTTTTAGGAGAATTAAAAACGATCTTCTA TACATTATCTAAACTACCCAGATTATGAAATAGTTCATTACTAGAATTTAGATATTAGCTCTTTT AATTAGAACTTTGTCTAAAATGTCAGATAATTAGGGTTCAAACTTATAATTATTTTTTATAATAT TTATCTTTAATGAGTGCTTATACTTTTAAATTAAAATCCCAACGTCATCCCAAGAAGAATCCACT GTAATGACGGGCACTCAAATCTGGGATCATCCCAAATGAGAAAAGCCTTCTTTACAAAAAGCATA CTTCTCATAACCATAGCTAAGAATTTTTTTTTTCGGCTAATTTGTGCTAATTACTTATTCCCTCT TCTCTTTGCAACTTTTTCATTACAGGTAAGTTTGAGGAACTCATAAAATTGCGCCAGAGTAAAGT TAACTTGCGAGTGCCGTGCCCTCGAGAACTTTAATTAGTAACACA Right flanking sequence: Indices 10508882 -- 10509381 TATTCACGCCTTCGGAGAAAACTTTGGACTGAGAATTTGGTCATAAATCTTGCAAAACACGAAAG CAACATAAGCAAACCAAACAGGTGCTCCATTGACCAAAAGTCCGGTAAATTGAATTAAGATGAAA AGCCTAGCCGGCGATAGAGAGAGACGGCAACAGCAGGAGGCATCACACTGTGAGAGTGAGATGCA GCGTCAACAACTTTTTAATGCCTTGGCAATTTTATGCTTAATATTTCGTTACCTGTATCAAAAGT ACGAGTCCCAAGTAAAAGTCAAGACCCCTGGAACAGATGCTCCAAGATTTCCCCAAAAGATAAAC AAAACCGAAAAAGGAAGCGAGAAAGAAATGTGTAGTGTGAGTGAGAGGGGTGGATCGTTGGGCAA AGGTAAAGACAGGGATGGACAGTATTAAGCTTAATAAGATCAAAATCTCTGCGGATTATTTTGTA CACTTTTTTTTTTTTTTGAGACCCAAACTTTTCTTACCTTTTTCG Found at i:10510195 original size:7 final size:7 Alignment explanation
Indices: 10510181--10510207 Score: 40 Period size: 7 Copynumber: 4.0 Consensus size: 7 10510171 AAAATACCCG 10510181 CAGAAAA 1 CAGAAAA * 10510188 CTGAAAA 1 CAGAAAA 10510195 CAG-AAA 1 CAGAAAA 10510201 CAGAAAA 1 CAGAAAA 10510208 TAAAACAATA Statistics Matches: 17, Mismatches: 2, Indels: 2 0.81 0.10 0.10 Matches are distributed among these distances: 6 6 0.35 7 11 0.65 ACGTcount: A:0.67, C:0.15, G:0.15, T:0.04 Consensus pattern (7 bp): CAGAAAA Left flanking sequence: Indices 10509681 -- 10510180 TTTTAACAGAGATTAGAACGTCGTACAAGTTGTAACTTTTTAAGCAGCAGCAGCAGTACCAGCGC AGCAGCACAAAAACATTTCCCGAAGAGAGCGACTGCCACAGAAAAGTTTTATATTCATTTCCAAC TTGTTCCGATTTCAAGTGCTGCAAAACATTTCGAAGAATGAATATTTAATGCCCCAGGGTTGGGA GGGGAGTGAACTATGGAAATCATTTGACACGTAGAAATCTGTTCTCGATTGTCGTAAAAAAAAAT ATATGTAATGCAAATGACAAACATGTGCATGCATATGGAAAAGTATATAACATAAATGTACTCAC GATGATGATGATGATGATTAGGATCGCAACCCGTCATGTTGCTTAAATTGCGGCATAAAAAATAG AGCTCCCTGCAAATGCGGCGCTTATCTTTTGGCTTTTTTCAAACCCCTTGAAGCAGAAAGAAAAA TTGTCATTGTAACTACATAAAAATGAAATGCAATAAAAATACCCG Right flanking sequence: Indices 10510208 -- 10510707 TAAAACAATAACAATTGGAACAACGAAACCAGAAGGCAACACATAAAAATAATTTCAAATGTGCA GTCGGGGGAAAGAGGGAGATAGACAGTGTAGGAAATAGAGCACAAGAGCGAGAGAGAGAGACGAC AGGATGATTTGGGCCAACGGGAAGTGGTAAACAGTAAAAAATTCTAAAATCATTTTTCAAATAAT AACAAAATTACATTTTGTGCTGTTAAAAAGTTAAAGACATTCAAGCATTTGTAATTATTAAATTC GAGCAGTTTTTTATTTAAAATATGCATATAATTTATTTAATAATTTATTTAATACAATATATATT TTCCGCGTTTTTCTCACTGCATCAAATATAAATGAAAATTGTTCGCTTTCGGTTGTTGTTTTCCC CGTATGTTTTTTTGCTCGATTTATATTTTGTCACAGAAATGAAAACTATTGAATGTCAAACAAAA ACGTGCAATCGCAATCGACGCAAGCAGACACGCACGCATACATAT Found at i:10510765 original size:10 final size:10 Alignment explanation
Indices: 10510749--10510775 Score: 40 Period size: 10 Copynumber: 2.7 Consensus size: 10 10510739 AAAACTTCAC * 10510749 GGAAAAGTGG 1 GGAAAAGAGG * 10510759 TGAAAAGAGG 1 GGAAAAGAGG 10510769 GGAAAAG 1 GGAAAAG 10510776 CAAGCGCACA Statistics Matches: 14, Mismatches: 3, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 10 14 1.00 ACGTcount: A:0.48, C:0.00, G:0.44, T:0.07 Consensus pattern (10 bp): GGAAAAGAGG Left flanking sequence: Indices 10510249 -- 10510748 CATAAAAATAATTTCAAATGTGCAGTCGGGGGAAAGAGGGAGATAGACAGTGTAGGAAATAGAGC ACAAGAGCGAGAGAGAGAGACGACAGGATGATTTGGGCCAACGGGAAGTGGTAAACAGTAAAAAA TTCTAAAATCATTTTTCAAATAATAACAAAATTACATTTTGTGCTGTTAAAAAGTTAAAGACATT CAAGCATTTGTAATTATTAAATTCGAGCAGTTTTTTATTTAAAATATGCATATAATTTATTTAAT AATTTATTTAATACAATATATATTTTCCGCGTTTTTCTCACTGCATCAAATATAAATGAAAATTG TTCGCTTTCGGTTGTTGTTTTCCCCGTATGTTTTTTTGCTCGATTTATATTTTGTCACAGAAATG AAAACTATTGAATGTCAAACAAAAACGTGCAATCGCAATCGACGCAAGCAGACACGCACGCATAC ATATACAGAAATTCAGACAGTCGGCGATATTAAGGAAAACTTCAC Right flanking sequence: Indices 10510776 -- 10511275 CAAGCGCACACACACGGCGTATACTTAACAAAAATATTTACTCGCTCAAAAATGGTTGTGGGTGC ACATGGTTTTCCTTGTCTGTACGATTTTACATTGAAGATTAAATGGTTTTTTATGTTTATTGCAC AAATACTTTTATTATTATTCCCGTTAGTTGTTATTGCGGTTTTTCTTCTGGTTTTTTTTGTGTAC CAATAAGTGATACCGCTTTTCCACGTAGATAAAATTTCGATTTGTGAATTGGGAATAGGAGATGA AATAAATGTAACTTGTGCTAACCCCTGCAGTTCATTTTTGGATTTTACTTTAATGTTGGAAACGA ATTGGAAAAGTAATAACCAATTAAAAAAAATACTTTTTAATTAAATACGTTATATTTTTAGCATC TCATGTAGCTGGCGAAAATCAAATATTCTTTAAAGTCAATCAAACAGTTCACTTACTTAGCTGTA GTTACTAATCCATTCTATGGCAATTAAAATTAAATATGCATTTAA Found at i:10512975 original size:8 final size:8 Alignment explanation
Indices: 10512958--10512977 Score: 33 Period size: 8 Copynumber: 2.5 Consensus size: 8 10512948 TTAAATGAAA 10512958 TAAAAGTT 1 TAAAAGTT * 10512966 TAAAATTT 1 TAAAAGTT 10512974 TAAA 1 TAAA 10512978 CTGAAACCAT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40 Consensus pattern (8 bp): TAAAAGTT Left flanking sequence: Indices 10512458 -- 10512957 TGTTTTTCTTTTGTGTTGGGCTCAAAGGGGGGGTAGTGAGGTAGCGCTAATAAGCCAGTCAATTG TTGCTGTTGCTTTGGCTACACACACAAAATTTGTGCTGGCTAATGGGCCAATACAAACAATTTAC AAATTTAACGCTGTTTTTCTACGTCTCTATTAGAATGCTTGTTGGGGGTATATAATACACGCTTT GTTATAATAAAGTAATTAGTTTTAATTCAAACAAAACTTGATTTCATGATGAAATAACATTTGGT AAGAAGTGCCATTGCTATTTATGGTGGTTGTGAAGAAATCACTAGAAGGTTCAAGCTGTAATTGT ATTATTTTTATTATTATGCAGTATTTTAAGTCGACTTAAGTGGAATTTATAGCATTTAAAAATAT TTTTATAATCGAATTTAAGATTGCATTATTTGGTGAATTGAAATGGTAAATCTATCCGAAGCACT TACTTATCTTTTTCATTGATTGCAAAGAATATCTTTTAAATGAAA Right flanking sequence: Indices 10512978 -- 10513477 CTGAAACCATTCTTTAGTTACTTTCAGTAATCCTGTTCTCCGCATTCGACGGAAGCTTTAATATG CAATATTTTAATTAATTTTTCGCACAGTCATGCAAAAATAAAAACGAACGAAGAGCATTTTCCTT TGACTCTATGGCACCAACAAAAATCTGCAAAATAAAAACAAAACCAGATAAAGAAAAAACCTGAA AAAAAAAATCATTTGCGCCTCTGCGTCTGCCGCTGAATTAAAATTATTGTAGAACGGGTTTCCCA TGGGCTTTAAACATCAAACGAAATGGCTCAAAAGACTGTGATTTATTTCATTTAAATTTGTTTTA TTTTAATTCTGCATACGGCATCTGAGTAATTACAATTACTTTTGTTAGCCTTTCCCATGGGTAAG CTGTCAAAAGTTGACCGAAAACCCTTTTGGCACTCACCTAACAGCAAATTATGATCTAATTATTT GGCTTAATTGCCCTGTCGTAACTAGAAATTGAAATTGAGTTTTGC Found at i:10515773 original size:8 final size:8 Alignment explanation
Indices: 10515762--10515781 Score: 26 Period size: 8 Copynumber: 2.5 Consensus size: 8 10515752 AAATAAAACG 10515762 CCCAACCA 1 CCCAACCA ** 10515770 CCCACGCA 1 CCCAACCA 10515778 CCCA 1 CCCA 10515782 CACATGTGCA Statistics Matches: 10, Mismatches: 2, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.30, C:0.65, G:0.05, T:0.00 Consensus pattern (8 bp): CCCAACCA Left flanking sequence: Indices 10515262 -- 10515761 TCCTGGTGTTTAGAGAACTGATTTTAAATTAAAGTATTTTAATTAACATTGGAAACCGAACGAAA AAATTACTTGCATGGTCACACTCCGCCTAGTAGAAGCAAAGTGTGACCATAATAGTATCAGAAAG TTGCCCAACGTTTTTAAGATTAAGAAGAATAAATCTTCGGTTTCTTTTTTTTTGCCTTAATGTTC TAAGACTTTCTCCGTTGTAATGGCGTTTTTGCACATCACATCCTTTTCATGGGGTTCATGAGATA GCAAAGTTTCGCTATTGCAGTTAACCCCTTGCTCGTCCAATTCCAATTATAATTTACACATTCAG ACCATTTGTCTTCGCCGCTTTGGTTTTTGGAGACGGCTACGCGACATTGCCATAATTTAGCCACT TGGCCGTAATTTAAAGCAAGCGCTTTCTGACATTTCGTTTTTACGACTTTTTAGCAAGTTAATAA AGTGTTCTTTCTGTTCTCCCAGCCAAAAAAAAAAAAAATAAAACG Right flanking sequence: Indices 10515782 -- 10516281 CACATGTGCATATACATAAGTTGAGCCCTTTGCAGACAGTACGTGACTTCCGGCCAAAACAAAAC GGTTTTTGTTGGTAGTATTTTTCATTTTTTTTTTTTTCGGTTGCCAGACATTTTATGATAATTTA TTTGATTATTTTCTTGTTAAAGTGCAAACTTTGTCATATTCTTGGTGCTCGCAGCTTTTTCTTTT CTTATTTTCGTTATTTTGCGCTATTTTCTCTGTTGGTTTGGTAAAAGTTTATGCATGGTGTATGA AAAATCGTCGACGGAAACGGAAATGTTGCACAACATATGCGCCAGTGCGGAGTTTTCTCTCCCAC ATATACATTCGCATATACATATGTGTAGGTATATGAATAGATATCCTTGTGTTTGCACAAGTGTG AGCAAATAAATTTTATTGCATATTTTTCGGCGCCACATGACGGGGCAGCAAACGGACTGGCAAGT GCTATTTATGTGGTGTCCTATGCCATTCTGATTTTAAAATCAATT Found at i:10515992 original size:9 final size:9 Alignment explanation
Indices: 10515973--10516004 Score: 41 Period size: 9 Copynumber: 3.6 Consensus size: 9 10515963 CAGCTTTTTC 10515973 TTTTC-TTA 1 TTTTCGTTA 10515981 TTTTCGTTA 1 TTTTCGTTA * 10515990 TTTTGCGCTA 1 TTTT-CGTTA 10516000 TTTTC 1 TTTTC 10516005 TCTGTTGGTT Statistics Matches: 21, Mismatches: 1, Indels: 3 0.84 0.04 0.12 Matches are distributed among these distances: 8 5 0.24 9 8 0.38 10 8 0.38 ACGTcount: A:0.09, C:0.16, G:0.09, T:0.66 Consensus pattern (9 bp): TTTTCGTTA Left flanking sequence: Indices 10515473 -- 10515972 GTAATGGCGTTTTTGCACATCACATCCTTTTCATGGGGTTCATGAGATAGCAAAGTTTCGCTATT GCAGTTAACCCCTTGCTCGTCCAATTCCAATTATAATTTACACATTCAGACCATTTGTCTTCGCC GCTTTGGTTTTTGGAGACGGCTACGCGACATTGCCATAATTTAGCCACTTGGCCGTAATTTAAAG CAAGCGCTTTCTGACATTTCGTTTTTACGACTTTTTAGCAAGTTAATAAAGTGTTCTTTCTGTTC TCCCAGCCAAAAAAAAAAAAAATAAAACGCCCAACCACCCACGCACCCACACATGTGCATATACA TAAGTTGAGCCCTTTGCAGACAGTACGTGACTTCCGGCCAAAACAAAACGGTTTTTGTTGGTAGT ATTTTTCATTTTTTTTTTTTTCGGTTGCCAGACATTTTATGATAATTTATTTGATTATTTTCTTG TTAAAGTGCAAACTTTGTCATATTCTTGGTGCTCGCAGCTTTTTC Right flanking sequence: Indices 10516005 -- 10516504 TCTGTTGGTTTGGTAAAAGTTTATGCATGGTGTATGAAAAATCGTCGACGGAAACGGAAATGTTG CACAACATATGCGCCAGTGCGGAGTTTTCTCTCCCACATATACATTCGCATATACATATGTGTAG GTATATGAATAGATATCCTTGTGTTTGCACAAGTGTGAGCAAATAAATTTTATTGCATATTTTTC GGCGCCACATGACGGGGCAGCAAACGGACTGGCAAGTGCTATTTATGTGGTGTCCTATGCCATTC TGATTTTAAAATCAATTCTTTTTTTGTGCATTCCAGTCGTTGGTGTTTTTTGCGGCTTTTCCTGC CCTCGCCATTCAATCAGCCAACAAATGAAATGAAAACTCGAGCCAAAGTTTTTCTCCCTTACCTA TTTTTTTCTATTTTTTTTTTTTTAGCCCGTTTGTTATTTGCCCTGTGGCAGTCTAGTCAAAAGTT TTGTTTGGCATCGGCAATATCCTGGCGGCAGCTGTGTGTCTCCCC Found at i:10516003 original size:10 final size:9 Alignment explanation
Indices: 10515979--10516004 Score: 36 Period size: 10 Copynumber: 2.8 Consensus size: 9 10515969 TTTCTTTTCT * 10515979 TATTTTCGT 1 TATTTTCGC 10515988 TATTTTGCGC 1 TATTTT-CGC 10515998 TATTTTC 1 TATTTTC 10516005 TCTGTTGGTT Statistics Matches: 15, Mismatches: 1, Indels: 2 0.83 0.06 0.11 Matches are distributed among these distances: 9 7 0.47 10 8 0.53 ACGTcount: A:0.12, C:0.15, G:0.12, T:0.62 Consensus pattern (9 bp): TATTTTCGC Left flanking sequence: Indices 10515479 -- 10515978 GCGTTTTTGCACATCACATCCTTTTCATGGGGTTCATGAGATAGCAAAGTTTCGCTATTGCAGTT AACCCCTTGCTCGTCCAATTCCAATTATAATTTACACATTCAGACCATTTGTCTTCGCCGCTTTG GTTTTTGGAGACGGCTACGCGACATTGCCATAATTTAGCCACTTGGCCGTAATTTAAAGCAAGCG CTTTCTGACATTTCGTTTTTACGACTTTTTAGCAAGTTAATAAAGTGTTCTTTCTGTTCTCCCAG CCAAAAAAAAAAAAAATAAAACGCCCAACCACCCACGCACCCACACATGTGCATATACATAAGTT GAGCCCTTTGCAGACAGTACGTGACTTCCGGCCAAAACAAAACGGTTTTTGTTGGTAGTATTTTT CATTTTTTTTTTTTTCGGTTGCCAGACATTTTATGATAATTTATTTGATTATTTTCTTGTTAAAG TGCAAACTTTGTCATATTCTTGGTGCTCGCAGCTTTTTCTTTTCT Right flanking sequence: Indices 10516005 -- 10516504 TCTGTTGGTTTGGTAAAAGTTTATGCATGGTGTATGAAAAATCGTCGACGGAAACGGAAATGTTG CACAACATATGCGCCAGTGCGGAGTTTTCTCTCCCACATATACATTCGCATATACATATGTGTAG GTATATGAATAGATATCCTTGTGTTTGCACAAGTGTGAGCAAATAAATTTTATTGCATATTTTTC GGCGCCACATGACGGGGCAGCAAACGGACTGGCAAGTGCTATTTATGTGGTGTCCTATGCCATTC TGATTTTAAAATCAATTCTTTTTTTGTGCATTCCAGTCGTTGGTGTTTTTTGCGGCTTTTCCTGC CCTCGCCATTCAATCAGCCAACAAATGAAATGAAAACTCGAGCCAAAGTTTTTCTCCCTTACCTA TTTTTTTCTATTTTTTTTTTTTTAGCCCGTTTGTTATTTGCCCTGTGGCAGTCTAGTCAAAAGTT TTGTTTGGCATCGGCAATATCCTGGCGGCAGCTGTGTGTCTCCCC Found at i:10516407 original size:10 final size:10 Alignment explanation
Indices: 10516392--10516411 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 10516382 TCTCCCTTAC 10516392 CTATTTTTTT 1 CTATTTTTTT 10516402 CTATTTTTTT 1 CTATTTTTTT 10516412 TTTTTTAGCC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80 Consensus pattern (10 bp): CTATTTTTTT Left flanking sequence: Indices 10515892 -- 10516391 AGACATTTTATGATAATTTATTTGATTATTTTCTTGTTAAAGTGCAAACTTTGTCATATTCTTGG TGCTCGCAGCTTTTTCTTTTCTTATTTTCGTTATTTTGCGCTATTTTCTCTGTTGGTTTGGTAAA AGTTTATGCATGGTGTATGAAAAATCGTCGACGGAAACGGAAATGTTGCACAACATATGCGCCAG TGCGGAGTTTTCTCTCCCACATATACATTCGCATATACATATGTGTAGGTATATGAATAGATATC CTTGTGTTTGCACAAGTGTGAGCAAATAAATTTTATTGCATATTTTTCGGCGCCACATGACGGGG CAGCAAACGGACTGGCAAGTGCTATTTATGTGGTGTCCTATGCCATTCTGATTTTAAAATCAATT CTTTTTTTGTGCATTCCAGTCGTTGGTGTTTTTTGCGGCTTTTCCTGCCCTCGCCATTCAATCAG CCAACAAATGAAATGAAAACTCGAGCCAAAGTTTTTCTCCCTTAC Right flanking sequence: Indices 10516412 -- 10516911 TTTTTTAGCCCGTTTGTTATTTGCCCTGTGGCAGTCTAGTCAAAAGTTTTGTTTGGCATCGGCAA TATCCTGGCGGCAGCTGTGTGTCTCCCCTTTAACCTTTGCTTTCGTTTGGATTTTCCGGCTTTTT TTACCTTTTAGCTGCATAGGTGAGAGTCGAAAAACAGCAATCAAAGAGAGCCTTTCGATGCATTT TCCCAGCCGCAGTGCTCTTAATTAATTTTTGCCCTTTATTAAATTTTTTCTGTGGCTGAAAAAGT TGCTCCGCAGAATAGCATTTGCTGCTGCTTGAAATTATTTGATCTCCCGGTTTTTTTTTTCCATA ATTGAAATGCATAAATTTTATTTCCCAGCCGTTCGCTTTATTTACCATATTAAAATAATATTTTT CGGTTTGCGCGCATTTCCATTTTGAATTCCGGATTTCACTTGTGTGCGTTATGCCATTTGTTCCC TTACCTCTTATTCAAGTTTATTTCTTTTGCTCGATTTGCGTTCGC Found at i:10517232 original size:10 final size:10 Alignment explanation
Indices: 10517210--10517232 Score: 37 Period size: 11 Copynumber: 2.2 Consensus size: 10 10517200 CTCCGAACAT 10517210 AAAGGAATAA 1 AAAGGAATAA 10517220 AAAGGCAATAA 1 AAAGG-AATAA 10517231 AA 1 AA 10517233 CATACCGACT Statistics Matches: 12, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 10 5 0.42 11 7 0.58 ACGTcount: A:0.70, C:0.04, G:0.17, T:0.09 Consensus pattern (10 bp): AAAGGAATAA Left flanking sequence: Indices 10516710 -- 10517209 TTGATCTCCCGGTTTTTTTTTTCCATAATTGAAATGCATAAATTTTATTTCCCAGCCGTTCGCTT TATTTACCATATTAAAATAATATTTTTCGGTTTGCGCGCATTTCCATTTTGAATTCCGGATTTCA CTTGTGTGCGTTATGCCATTTGTTCCCTTACCTCTTATTCAAGTTTATTTCTTTTGCTCGATTTG CGTTCGCGAATTAAATGCGCATTTTGAGCTAAACAATTATATGTTTTTTTTTCCTTTTTTATTAT TAGGGAAGTTCTTTGTTGGGTGGAAAAAGGGGCCGTGGCATCATTTGTTATAATTCCGGTTGCGG GAAAATGGCAAAAAGTATTTTCTTTTTTTTTTTTTTTTTGGCCGCTCTCTCGACAGCGGCGGAGT TTTCTTTCCGTTGTGCCACCTTTTGCGGCAAGCATAAAATACGTATTTGTGCTGACAGCCTGGCG CAGCTTTTTCGCCAACTTCTGGCATTGTTTCCCCACTCCGAACAT Right flanking sequence: Indices 10517233 -- 10517732 CATACCGACTGAGGAGAGCAAATGAGACGTAGCCGGAGCAAAAAGACATTTCCCCTCGCTTGATT CCATTTCCACTTTCCACTTTTCCACCAACTAATTACACGCGTTTGCATAATTGCCCGTCTTTCGT TCAATTTGGTTTCATCGCTCGATTCCCCATTTTCCACTCCCCAATTTCACATTCTGCGGTTGCTC CCCTTAACATTTTGTAAATCTTTAAAGTTCTTTTAATTTTCTTTGCTTTGGCGCAGTTTTTCAAC TCATTTCTCATGCATATGCAAATGGCATGCAAATTTCTCATTGCATACAAGCAGGCGCCGCAAAA ACTGCCAAAGTTTTACAGTTTCGAAACCCCGAAAACGATTTGTTTTGTTGCATTTTAATTGAGTA ACAAAATGCAGAACAAGCTCAAGGAAATAATTTCCCAAGGCGAGATGTGAGTTTATTTAATTGAA ATCTGGCTGGGTAAAACTTTTTTTTTTTTTGGCCAAGTCCTGACA Found at i:10517321 original size:8 final size:7 Alignment explanation
Indices: 10517296--10517322 Score: 38 Period size: 7 Copynumber: 3.9 Consensus size: 7 10517286 CCTCGCTTGA 10517296 TTCCA-T 1 TTCCACT 10517302 TTCCACT 1 TTCCACT 10517309 TTCCACTT 1 TTCCAC-T 10517317 TTCCAC 1 TTCCAC 10517323 CAACTAATTA Statistics Matches: 19, Mismatches: 0, Indels: 2 0.90 0.00 0.10 Matches are distributed among these distances: 6 5 0.26 7 7 0.37 8 7 0.37 ACGTcount: A:0.15, C:0.41, G:0.00, T:0.44 Consensus pattern (7 bp): TTCCACT Left flanking sequence: Indices 10516796 -- 10517295 ATTTTTCGGTTTGCGCGCATTTCCATTTTGAATTCCGGATTTCACTTGTGTGCGTTATGCCATTT GTTCCCTTACCTCTTATTCAAGTTTATTTCTTTTGCTCGATTTGCGTTCGCGAATTAAATGCGCA TTTTGAGCTAAACAATTATATGTTTTTTTTTCCTTTTTTATTATTAGGGAAGTTCTTTGTTGGGT GGAAAAAGGGGCCGTGGCATCATTTGTTATAATTCCGGTTGCGGGAAAATGGCAAAAAGTATTTT CTTTTTTTTTTTTTTTTTGGCCGCTCTCTCGACAGCGGCGGAGTTTTCTTTCCGTTGTGCCACCT TTTGCGGCAAGCATAAAATACGTATTTGTGCTGACAGCCTGGCGCAGCTTTTTCGCCAACTTCTG GCATTGTTTCCCCACTCCGAACATAAAGGAATAAAAAGGCAATAAAACATACCGACTGAGGAGAG CAAATGAGACGTAGCCGGAGCAAAAAGACATTTCCCCTCGCTTGA Right flanking sequence: Indices 10517323 -- 10517822 CAACTAATTACACGCGTTTGCATAATTGCCCGTCTTTCGTTCAATTTGGTTTCATCGCTCGATTC CCCATTTTCCACTCCCCAATTTCACATTCTGCGGTTGCTCCCCTTAACATTTTGTAAATCTTTAA AGTTCTTTTAATTTTCTTTGCTTTGGCGCAGTTTTTCAACTCATTTCTCATGCATATGCAAATGG CATGCAAATTTCTCATTGCATACAAGCAGGCGCCGCAAAAACTGCCAAAGTTTTACAGTTTCGAA ACCCCGAAAACGATTTGTTTTGTTGCATTTTAATTGAGTAACAAAATGCAGAACAAGCTCAAGGA AATAATTTCCCAAGGCGAGATGTGAGTTTATTTAATTGAAATCTGGCTGGGTAAAACTTTTTTTT TTTTTGGCCAAGTCCTGACAAATGGTTGAAAGCAATCAAATCAAATGGCTCAATTTTATTTACAT TTTTTTTTTTTGTTTCTTTTGCCTGTGAGGAGTAGCTGTCAAAAA Found at i:10517929 original size:8 final size:8 Alignment explanation
Indices: 10517905--10517929 Score: 43 Period size: 8 Copynumber: 3.1 Consensus size: 8 10517895 TGGGGAACGA 10517905 GATGGGTG 1 GATGGGTG * 10517913 AATGGGTG 1 GATGGGTG 10517921 GATGGGTG 1 GATGGGTG 10517929 G 1 G 10517930 TTTGTTAAAT Statistics Matches: 15, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 8 15 1.00 ACGTcount: A:0.16, C:0.00, G:0.60, T:0.24 Consensus pattern (8 bp): GATGGGTG Left flanking sequence: Indices 10517405 -- 10517904 AATTTCACATTCTGCGGTTGCTCCCCTTAACATTTTGTAAATCTTTAAAGTTCTTTTAATTTTCT TTGCTTTGGCGCAGTTTTTCAACTCATTTCTCATGCATATGCAAATGGCATGCAAATTTCTCATT GCATACAAGCAGGCGCCGCAAAAACTGCCAAAGTTTTACAGTTTCGAAACCCCGAAAACGATTTG TTTTGTTGCATTTTAATTGAGTAACAAAATGCAGAACAAGCTCAAGGAAATAATTTCCCAAGGCG AGATGTGAGTTTATTTAATTGAAATCTGGCTGGGTAAAACTTTTTTTTTTTTTGGCCAAGTCCTG ACAAATGGTTGAAAGCAATCAAATCAAATGGCTCAATTTTATTTACATTTTTTTTTTTTGTTTCT TTTGCCTGTGAGGAGTAGCTGTCAAAAAAGTTGTAGGAAAAAATAAGGAAATTTCGCCATCGTTT CCTTCATCGCAATTTTTTCTCCGGCTCTAATTAAGTGGGGAACGA Right flanking sequence: Indices 10517930 -- 10518429 TTTGTTAAATCTGCTTTGAAAATGCCATTTCGCTAAGCTCTTGCCACTCTCCCGTTCAATCCCGC TGAAGCGTAAATCTCATTTTAATGCCAAGAGAGTTCTTAATTTAGTTTAATTACACCAAACACAC GAAGGGAGCGAGCGGATAGACAGGACCAGGACCAGGACGAGAACGAGGACCAGGACTCTGCCATG GCACACACGTTAACAAGTTTTTGTTGCTCCTTGTGCTCCTGCTCGGCTGCCTCAAAGGCAAAGTC TGGCTTGGCTTCGTTTGTCCGCACCCTCTGTACCGATTTGCCGTTCATGTTCCCTGTATCTGGTT TTAGTTCTGGTACTGTTTCTGCCATCGCTGCATGCTTCAATGCGATTTTAATTACATGAAATATA TGCAGCCGGCGCAATTCTGCAGAGTCAGCCAAAGTCGCGCCATGAATTCGCCGTACAACATGACG TATGCGTAATTCAGATGAAAGGGATAAATACACGGATCAAAATTT Found at i:10518550 original size:8 final size:8 Alignment explanation
Indices: 10518537--10518554 Score: 36 Period size: 8 Copynumber: 2.2 Consensus size: 8 10518527 CATGAACCAG 10518537 ATATCTAT 1 ATATCTAT 10518545 ATATCTAT 1 ATATCTAT 10518553 AT 1 AT 10518555 GTTATTACAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.39, C:0.11, G:0.00, T:0.50 Consensus pattern (8 bp): ATATCTAT Left flanking sequence: Indices 10518037 -- 10518536 TAGTTTAATTACACCAAACACACGAAGGGAGCGAGCGGATAGACAGGACCAGGACCAGGACGAGA ACGAGGACCAGGACTCTGCCATGGCACACACGTTAACAAGTTTTTGTTGCTCCTTGTGCTCCTGC TCGGCTGCCTCAAAGGCAAAGTCTGGCTTGGCTTCGTTTGTCCGCACCCTCTGTACCGATTTGCC GTTCATGTTCCCTGTATCTGGTTTTAGTTCTGGTACTGTTTCTGCCATCGCTGCATGCTTCAATG CGATTTTAATTACATGAAATATATGCAGCCGGCGCAATTCTGCAGAGTCAGCCAAAGTCGCGCCA TGAATTCGCCGTACAACATGACGTATGCGTAATTCAGATGAAAGGGATAAATACACGGATCAAAA TTTGATTATGTGTAAAGTGAAAAAGTATATGAAATGCTTTTTCATGCACAATTTCAATAAAACCT ATTTAAATTCGAATAGAATAATCTGTAATTAAGATCATGAACCAG Right flanking sequence: Indices 10518555 -- 10519054 GTTATTACAAGGTATTATGTTATGAATAGAATTTGATCTCAGTGCAGCATGAATCAGAAAAGACT GGGAAGCAGTGAGGGCAGAATGACACAAAGCCAGACAAGGATGCGGCTCCAACTCTGATGAGTTG GCTGCCTGTTGGCAACACTTTTGTGTTTCAGTCGCTGCCTCCTGGCTTGCCACGTAATTATGCGC ACACAAAATTTCAACAAATTTTTGCACGTGGAAAATACAACAGTCTGGCGTAAGATAGAGAAAGC ATGAGAGACAGGGATAGGGACAACAGATGTGGCTGTTGCATTTGACTGAGCCAAAATGACTTGGC CATGTTTCTGTTGTCGCATCTCGTGTTGTTTGCGTTTGTAACTCATACTTCGCAGCTGAAAAGCC CCACAACTCCACAGCTCTTTCCGAATTTCGTATCTTCTTTTTTTGCAATTAGCAACAGCCGAGGG ACAGGCTAAATTGTTTGTGAATTTTCCATTTGCCAAGCTGTATAT Found at i:10519969 original size:9 final size:9 Alignment explanation
Indices: 10519955--10519973 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 10519945 ACTTAATGAG 10519955 TACTTACTT 1 TACTTACTT * 10519964 TACTTATTT 1 TACTTACTT 10519973 T 1 T 10519974 CTATGATGTA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.21, C:0.16, G:0.00, T:0.63 Consensus pattern (9 bp): TACTTACTT Left flanking sequence: Indices 10519455 -- 10519954 CTCTGGGAGATGGAGATGAGGCCAAGAGAAGACACTGCAACATCGCAAGGCAGTCAAGGCAACAC TTTATCATGTCAGTTAGCAAAGTGGAAATGGAATAAAACCCAGCACGATGTGCAGAGCAGCGGGT CAATGGGGGCATCCCAAAAGTTGTCGGGGGAATTTTCTGTTGCGTTTTTGTTTTAATATTATGTA AACTCTGCCCAAAGGTGCTAAGATAAATATAACAAAATGAAAAAAAAAATTTATCAACAAGAGGT GGAAAATGAGCCCGAGGTAGAAATGCCATTTAAAAATATTTCTGTAGAATACTCATTAAGATCTT TAAGCGAAATAGATACAAAAATTTATTTAAATTCCAAAGCAGTTGTTACATTGTGTTAAAAATAT TGAGCACTACTTATGGCTGAGTTACTGTGGAGAAAGTTAACTTTTAAATTGTTAGTGAAAAAAAA GACCTGAAATATTGTTCTATCATACAAGAGCATACACTTAATGAG Right flanking sequence: Indices 10519974 -- 10520473 CTATGATGTATGGTGATGTACCAAAAAAAATATGACAGATCGTTAAACCCTTCGCAGTTGACAAG CGTTGCAACAAAGAAGGTTAACTTCCCTTTGGGACATCATCCTTTTGTCCATATAAAGGTGTGTC ATGGCCTGTGCAAGTGTTGGAAAAACCAACGGCAACTCGGCGAAAAATTTCCCTCTGAATATGCA AATGAAAATGCAGGACGAATGAGGTTAAGTTGAGCAGCCTCAATTGTAGCTGACGGAAATGAAAA CAAGATGTGTGGCTGGGTGAAGGTGTTCTGTGTACTGGGCACCCCAATGCAGACGCAAACGCAGA TGCAGATACAGATGCGGATTCAGATGGAGATGGAGATGCAGATGAGCTACTGGCACCAGCGGGGG GCTGCGGTGGTTTTACCTTTTCTGGGCCTCCTCTTGGGCATAAAATTTGAAATGAAAATGACGCG AACTGTACGCAGGATGCAACAATGCAGAGGACCGAAATGGGAAAA Found at i:10521344 original size:8 final size:8 Alignment explanation
Indices: 10521331--10521347 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 10521321 GTCAATGGGG 10521331 CAGATCCA 1 CAGATCCA 10521339 CAGATCCA 1 CAGATCCA 10521347 C 1 C 10521348 TTCAGCCTAG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.35, C:0.41, G:0.12, T:0.12 Consensus pattern (8 bp): CAGATCCA Left flanking sequence: Indices 10520831 -- 10521330 GAAAAAAAAAAGTTTAATTAAAAATCGACTAGAAAGGTTACAAATGCACAAGGGGAAAATGGAAC TGGAAAACAAGATTGAGTGCTCGAAAACAAAGAAACTGAAATGAAGTCAACTACGTTTGCTGCCT ATCATTTCAGCTCGAATTTCAAAGAAAAGTCAATTTAAGTGTTTGCTGCTCCACAGAATCTCTGC TTTTTCCGCTTCTTCATTCACACATTGATTGCCTCTTCAGACCAAAAAGAGGAAAAAAAAATACT ATATAAGACAATCTACAATAGGAATAGGAATAGGCTCAAAATGGAATTGTTCGATTTGTACATCC CTACTTTGTGTTCGATTTCGATTGCGTTGCTTTTGGAACTCACCATATTGAAAACTCATTTCGCC AGAGAAAAATTAAAAGTGCATTTCCAGTTGGGCAATCAAGGCTGTGGTGACCCACACTTGCCGAT GAAAATTATATAGTCGAAATTCAGGGTCCGAGTTGGTCAATGGGG Right flanking sequence: Indices 10521348 -- 10521847 TTCAGCCTAGTCATTAGACTTTACGGCTTGCCTCATTTCAAAATTCATGTTTCATGTTTTTTTAT GCTTTAAAAATTACTACTTTTCCGCACTTTTGTGCAGAGTGAAAAACATTATCCATTCAACTTGT TTTTTAGGCCAGCAAGGTAAAATCTTTTTCGTTACTTTGCTTTTAATTATGCCCTCGTCTAAGGT CTCTTTTTTCGGCTTGGCTGGTTAACTTGTGCGTGGCCAAAGAGATCATAATGTGCTACGGCCCC AGGTGGCTCATTAAAAAATAAAGAAAAAATCGCGTCAGTTAGCCAACAACAAGTCATCACAATGA TTTTGGGCAAAAGTTGAGCCACGTTTAGGCGCCTAACGAGTTTCAAGTGGATATGGAAGCCCAAC TACAAATTTAATTTGTTTGCGCCGCGTTTTGTCATAAACACATGTAGAGAAGGGGCAAGAAACTG CCAAGTAATGCCAAAATATTTTGAGCACCGGCTCTGGCAATTGAT Found at i:10521401 original size:7 final size:7 Alignment explanation
Indices: 10521391--10521406 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 10521381 CATTTCAAAA 10521391 TTCATGT 1 TTCATGT 10521398 TTCATGT 1 TTCATGT 10521405 TT 1 TT 10521407 TTTTATGCTT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.12, C:0.12, G:0.12, T:0.62 Consensus pattern (7 bp): TTCATGT Left flanking sequence: Indices 10520891 -- 10521390 GGAACTGGAAAACAAGATTGAGTGCTCGAAAACAAAGAAACTGAAATGAAGTCAACTACGTTTGC TGCCTATCATTTCAGCTCGAATTTCAAAGAAAAGTCAATTTAAGTGTTTGCTGCTCCACAGAATC TCTGCTTTTTCCGCTTCTTCATTCACACATTGATTGCCTCTTCAGACCAAAAAGAGGAAAAAAAA ATACTATATAAGACAATCTACAATAGGAATAGGAATAGGCTCAAAATGGAATTGTTCGATTTGTA CATCCCTACTTTGTGTTCGATTTCGATTGCGTTGCTTTTGGAACTCACCATATTGAAAACTCATT TCGCCAGAGAAAAATTAAAAGTGCATTTCCAGTTGGGCAATCAAGGCTGTGGTGACCCACACTTG CCGATGAAAATTATATAGTCGAAATTCAGGGTCCGAGTTGGTCAATGGGGCAGATCCACAGATCC ACTTCAGCCTAGTCATTAGACTTTACGGCTTGCCTCATTTCAAAA Right flanking sequence: Indices 10521407 -- 10521906 TTTTATGCTTTAAAAATTACTACTTTTCCGCACTTTTGTGCAGAGTGAAAAACATTATCCATTCA ACTTGTTTTTTAGGCCAGCAAGGTAAAATCTTTTTCGTTACTTTGCTTTTAATTATGCCCTCGTC TAAGGTCTCTTTTTTCGGCTTGGCTGGTTAACTTGTGCGTGGCCAAAGAGATCATAATGTGCTAC GGCCCCAGGTGGCTCATTAAAAAATAAAGAAAAAATCGCGTCAGTTAGCCAACAACAAGTCATCA CAATGATTTTGGGCAAAAGTTGAGCCACGTTTAGGCGCCTAACGAGTTTCAAGTGGATATGGAAG CCCAACTACAAATTTAATTTGTTTGCGCCGCGTTTTGTCATAAACACATGTAGAGAAGGGGCAAG AAACTGCCAAGTAATGCCAAAATATTTTGAGCACCGGCTCTGGCAATTGATTAAACATTATAGTT ATGTTGTTATGAATTTTGATAGATGATTAAGTCGAGAGTTCAAGT Found at i:10522819 original size:7 final size:7 Alignment explanation
Indices: 10522807--10522820 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 10522797 TTGTACTAAA 10522807 ATTTTTT 1 ATTTTTT 10522814 ATTTTTT 1 ATTTTTT 10522821 TAACTTTGTC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86 Consensus pattern (7 bp): ATTTTTT Left flanking sequence: Indices 10522307 -- 10522806 CAATATAAACAGCATCCTGCCGGCGTTGTTGACACATAACAGCATTGCGTACTTTAGCTGCCATC TATAAGAGTGGGTTTTCCTGGCATTTCCACTCTTCCTTCATTGCTGCCACGTTCATCCTTTTCGC CGGTCTTCTTCTAACTCCCTACTTTTCCTACACTCGATATCACGCCATTTCGCCTCAATCATTTC AATCAGCTTTGGCTCACTTATAGCTTCACTTACATTGACTTGCCTTTTGGCTTCTGTCTGCAACC TCATTCCGCCCCCCTTTTCCGTTTGATAACTTTCTGGTTGGTAAAAAACAGAGGCGTACGATGGG GGGATTGACATTTTGGAGAAAAAAAATCTTTAACAACGTTACCAGAGAAAAGTATTAGATCTGCA AAAACTTTGCCTTGAGTTACTACATGAGAAAGATCGTAACTTTATTAAATAATCAGAACCTTCTA AAGTTTACTTTTACAAAAACAGCTAAAACTATTGATTGTACTAAA Right flanking sequence: Indices 10522821 -- 10523320 TAACTTTGTCATCTGAATTTCTCGTTTACAAATATTTTGGTATCTCAGCTTACTTTGTGTATATT GTGACTTTAGATCGAACTTTAATCAAAGTAAACTTTTATGCGCTTTGGCTTTGGCTATACACAAT TTTAAGGCGCACTCTTTTCCACGTTTTTTTTTTCTTCCTGAATGTCGGGGTGATGGATTTTGATA CTTTTCCCCACCCCAATCCCCTGTGGCCCATCAACACATTGTGCGTTTTTCAGGAGTAACAAGTT GCCAGGCCATATAAAAGGGATATATGCTGGAAGGAGTGCTGCGAAATTGAATGGGGTACACCACA CCAGCAAGTCAGGAATAAGAAAGCTGTGTGTGCGGCCAAAAAAGAAAAAAGTAAACGGCAAAAAA AGAAGCGAAAACTTTAAATTGAAAACTGTATTCAAGCGTTAAATTGGCTTTTTCTGCGTTGCTCC ATCTCGCTCTAGCACGAGAGGAAGCATCTGGCTGTTTCTATGCCC Found at i:10523195 original size:7 final size:7 Alignment explanation
Indices: 10523183--10523200 Score: 29 Period size: 7 Copynumber: 2.6 Consensus size: 7 10523173 GTGTGCGGCC 10523183 AAAAAAG 1 AAAAAAG 10523190 AAAAAAG 1 AAAAAAG * 10523197 TAAA 1 AAAA 10523201 CGGCAAAAAA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.83, C:0.00, G:0.11, T:0.06 Consensus pattern (7 bp): AAAAAAG Left flanking sequence: Indices 10522683 -- 10523182 GTATTAGATCTGCAAAAACTTTGCCTTGAGTTACTACATGAGAAAGATCGTAACTTTATTAAATA ATCAGAACCTTCTAAAGTTTACTTTTACAAAAACAGCTAAAACTATTGATTGTACTAAAATTTTT TATTTTTTTAACTTTGTCATCTGAATTTCTCGTTTACAAATATTTTGGTATCTCAGCTTACTTTG TGTATATTGTGACTTTAGATCGAACTTTAATCAAAGTAAACTTTTATGCGCTTTGGCTTTGGCTA TACACAATTTTAAGGCGCACTCTTTTCCACGTTTTTTTTTTCTTCCTGAATGTCGGGGTGATGGA TTTTGATACTTTTCCCCACCCCAATCCCCTGTGGCCCATCAACACATTGTGCGTTTTTCAGGAGT AACAAGTTGCCAGGCCATATAAAAGGGATATATGCTGGAAGGAGTGCTGCGAAATTGAATGGGGT ACACCACACCAGCAAGTCAGGAATAAGAAAGCTGTGTGTGCGGCC Right flanking sequence: Indices 10523201 -- 10523700 CGGCAAAAAAAGAAGCGAAAACTTTAAATTGAAAACTGTATTCAAGCGTTAAATTGGCTTTTTCT GCGTTGCTCCATCTCGCTCTAGCACGAGAGGAAGCATCTGGCTGTTTCTATGCCCCTACACCGTT CCCCGTTCCCCTTTTCACCTCTTAACCCCTCACACAATTCTATGCCACAATGCACCTCATTCGAC GCTTGCACTTTCGCCTTTCAGCTGGTGCAGGTTTTGTTTTTCGGTGCTTTTATGTGTACATCCAT GCTACGTACTACACCCCCTTTCGCCTTGCCACAAGTATCGTAATTTTTAAAGGGTCTCCCACCCA GCGAAAAATAAAACCCTTTTTGTGCTTTGAAAAAAGCATGCTTTTCAGTTATGGCTACAATAATA GTAAAGTTTTGACAGGGGTATTTAAAAACATTTTTTTGCTTAAAGTAAATGAAGAATGTCTTTTT TTATAAGATACAATAACTTAAAAGGTAGAAAAGCTTATAAAGTTA Found at i:10523338 original size:7 final size:7 Alignment explanation
Indices: 10523326--10523341 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 10523316 TGCCCCTACA 10523326 CCGTTCC 1 CCGTTCC 10523333 CCGTTCC 1 CCGTTCC 10523340 CC 1 CC 10523342 TTTTCACCTC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.00, C:0.62, G:0.12, T:0.25 Consensus pattern (7 bp): CCGTTCC Left flanking sequence: Indices 10522826 -- 10523325 TTGTCATCTGAATTTCTCGTTTACAAATATTTTGGTATCTCAGCTTACTTTGTGTATATTGTGAC TTTAGATCGAACTTTAATCAAAGTAAACTTTTATGCGCTTTGGCTTTGGCTATACACAATTTTAA GGCGCACTCTTTTCCACGTTTTTTTTTTCTTCCTGAATGTCGGGGTGATGGATTTTGATACTTTT CCCCACCCCAATCCCCTGTGGCCCATCAACACATTGTGCGTTTTTCAGGAGTAACAAGTTGCCAG GCCATATAAAAGGGATATATGCTGGAAGGAGTGCTGCGAAATTGAATGGGGTACACCACACCAGC AAGTCAGGAATAAGAAAGCTGTGTGTGCGGCCAAAAAAGAAAAAAGTAAACGGCAAAAAAAGAAG CGAAAACTTTAAATTGAAAACTGTATTCAAGCGTTAAATTGGCTTTTTCTGCGTTGCTCCATCTC GCTCTAGCACGAGAGGAAGCATCTGGCTGTTTCTATGCCCCTACA Right flanking sequence: Indices 10523342 -- 10523841 TTTTCACCTCTTAACCCCTCACACAATTCTATGCCACAATGCACCTCATTCGACGCTTGCACTTT CGCCTTTCAGCTGGTGCAGGTTTTGTTTTTCGGTGCTTTTATGTGTACATCCATGCTACGTACTA CACCCCCTTTCGCCTTGCCACAAGTATCGTAATTTTTAAAGGGTCTCCCACCCAGCGAAAAATAA AACCCTTTTTGTGCTTTGAAAAAAGCATGCTTTTCAGTTATGGCTACAATAATAGTAAAGTTTTG ACAGGGGTATTTAAAAACATTTTTTTGCTTAAAGTAAATGAAGAATGTCTTTTTTTATAAGATAC AATAACTTAAAAGGTAGAAAAGCTTATAAAGTTAAAATATTCTGCAAATGACGGTCCAAGGAAAC TAAACTATGATTTACTACAAGTTGTTTATTTTGGAACTAATTCAATTCAGTGTATTCAATAGTTG TTATCACCAAAAAAAAAAAAAAACCTGAAATCAATTTTAGCATTT Found at i:10525330 original size:8 final size:8 Alignment explanation
Indices: 10525310--10525330 Score: 28 Period size: 8 Copynumber: 2.6 Consensus size: 8 10525300 TGGTATTGGT * 10525310 GAGGGGGG 1 GAGGGGGC 10525318 GAGGGGGC 1 GAGGGGGC * 10525326 TAGGG 1 GAGGG 10525331 CAGTTGGTAG Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.14, C:0.05, G:0.76, T:0.05 Consensus pattern (8 bp): GAGGGGGC Left flanking sequence: Indices 10524810 -- 10525309 AGCCCACATCCTTCGGGGCAGACAAACACTTATCAAATTATCTTGAGACGGGCGAAAAGAAAAAA AAAACGAGATCAGATTGTAAGTTACTTGCCTTCGGGTCGTTGGTGCGATTTGAGCCCGGTTGCGT GCCAGATAGCCATCAATATGCTTTGGCGATATTTATGAGGCGCGCCCGCAGGATACAGGCTTTAA TGATAGCCCAAAAAACAGGGCACTTAATTTCCCAGTCTTCTTGGGCATCAGCAGCACCGCCATCA TATCATACACATACACCGAACCACCAGAGCCACTAAAACCACCATCAGCAGCAGTAGCTTCGCTC CGCTCCGCTCAGCTCCTCCACAAGCAATCAATAACGATTTGATGAGGCCTCCCTTTTGGCAGCAG GATGCGAGTATCCAATCCACCTAGGCCATGGCCACTTAATTGTGTGTACATGTGTGTGTGTGTGA AACGAAAGCGAAATAATAATGAGGCTAATATAGGGTGGTATTGGT Right flanking sequence: Indices 10525331 -- 10525830 CAGTTGGTAGTGCAGTGAAACAAAATAAGAAATTGAATCAGCTAAGAATTGGAGTATAACTAATT TTGTTCTCCTCGATTGTACCCTTTTATACAGACCAAAATTGAGTACTGTAGTTTTCGCACTACTT ATACAGTTTTAGTTCAGAAATACAATCTTGTATTGTATTTACAAAGAAAGAAAATATTTTCTAGA TTTTTTATGTATTCCTAAAAGTGTTTTTTTAATTTATGGCACAATATTTTACACTTTACAATCCT AATGTAAGATTAAGTGCTATGTGTGTCCGCTCACGCTGAAAAATATATAAAATGCATAAGTGCAG ACTATTTCTTTTTTCACACAAATAAAAATATGAAATTTAAATGGAATATTTTCTTGTTTAGCAAA TATACTTTGTAAAATTAAGTATTTCAAAGAGTATTCCGAAATATCCCCTTCTTTCTGCACTGTAT TTCCCTTAGTTTTTGCTTTTGTGTCCGCAACAAAGAAATGTAGCG Found at i:10529824 original size:7 final size:7 Alignment explanation
Indices: 10529808--10529824 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 10529798 GAATGTGGAA 10529808 AAGCCAC 1 AAGCCAC * 10529815 AAGGCAC 1 AAGCCAC 10529822 AAG 1 AAG 10529825 TCGAATATCA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.47, C:0.29, G:0.24, T:0.00 Consensus pattern (7 bp): AAGCCAC Left flanking sequence: Indices 10529308 -- 10529807 GGAGACTGTACTATGATGCACTGCACCTGCGAATCAATCAAATTCCAGTGCAGCGAAACAAGTTA GCTTTCACTAATTGGTGTCTGTATGCGAGGTAACTTGATAACGCGAATTAGAAGTGCTCATCTTG ATTTATGGGTTGTTGAACAAGAAAAGTGGCTGTGAAAGTTGCAACGATACACCTAAATTGGTTTA GATTAGATTGATTTCTTTAATATTCTTTGCCATTCATTTTGTTTAGTGCATTTTCGTAAAGGGTT CCTGAATTGGTTTAAATCACCCATCGACCTAACATTACTGTAGTTTCATATGGGTCAAAAGCAAT CAAAAGTCCAAGTACTTACCGTATGCAAATGACTGTTGGGTAATTAAAATCAACTGCATTTTGAC CCTACTCAAAGTCTGCCCATTCTCAATTGCATATTTTGGGAGGGCTCTTATATCAAAAATTTCCA AAATATTTGCCATTGCATACATAATATGTGGATGAGAATGTGGAA Right flanking sequence: Indices 10529825 -- 10530324 TCGAATATCAAGAATTCGGTTCAGTTGGGATGGGAAAACTTAATTCAAAGGCCAGGATATGCATT ACATTTTTAATTGCTTTCGAGAAGAGAGTTTCCAGTGGGGAGAAACGAAGGACCCACAAACCCTT TGGCATATTGAATTCCAATCAGATTGCAACATGGTAAAAGTTTAATCAATTTTAATTAGGAAAAA CATTTTTCCATAATATTCTATCTTAAAGCTACCAAGCAAACTAGTTGTTTGAAATGATGTACCAA AAAATAAGTAAGAGCTTTACGATAATTAACTAAGTAAAAAGTTATAAACGGAACTTTTAGTTATA TGTACATTATGGGGATCAAAACTACACTTGCTTAAGGGGAAAATACTCTTATTACTTTTATTTGA TGAATCTGCTTTAAAGCTTTGTGGAAAACTCTATGCTCCATTTATTTAGTTAGACCGTAAACCAA ATTTCCGACAAAAGTGCACTTTTTATAATAACAAAAGTTCAATAG Found at i:10530210 original size:9 final size:9 Alignment explanation
Indices: 10530193--10530211 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 10530183 AAGGGGAAAA 10530193 TACTCTTAT 1 TACTCTTAT * 10530202 TACTTTTAT 1 TACTCTTAT 10530211 T 1 T 10530212 TGATGAATCT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.21, C:0.16, G:0.00, T:0.63 Consensus pattern (9 bp): TACTCTTAT Left flanking sequence: Indices 10529693 -- 10530192 TTGACCCTACTCAAAGTCTGCCCATTCTCAATTGCATATTTTGGGAGGGCTCTTATATCAAAAAT TTCCAAAATATTTGCCATTGCATACATAATATGTGGATGAGAATGTGGAAAAGCCACAAGGCACA AGTCGAATATCAAGAATTCGGTTCAGTTGGGATGGGAAAACTTAATTCAAAGGCCAGGATATGCA TTACATTTTTAATTGCTTTCGAGAAGAGAGTTTCCAGTGGGGAGAAACGAAGGACCCACAAACCC TTTGGCATATTGAATTCCAATCAGATTGCAACATGGTAAAAGTTTAATCAATTTTAATTAGGAAA AACATTTTTCCATAATATTCTATCTTAAAGCTACCAAGCAAACTAGTTGTTTGAAATGATGTACC AAAAAATAAGTAAGAGCTTTACGATAATTAACTAAGTAAAAAGTTATAAACGGAACTTTTAGTTA TATGTACATTATGGGGATCAAAACTACACTTGCTTAAGGGGAAAA Right flanking sequence: Indices 10530212 -- 10530711 TGATGAATCTGCTTTAAAGCTTTGTGGAAAACTCTATGCTCCATTTATTTAGTTAGACCGTAAAC CAAATTTCCGACAAAAGTGCACTTTTTATAATAACAAAAGTTCAATAGGACTCTTTTTTTTTTTG TCAGTAAAAAACTTCTTTCTAGTTCTAATACAAAAAGTTTTGTATAATTTTCACCAAATTTACTT CCCACTCTGGAGCTGTTTTCAACGCAAATAAATTTTAGCTCCTACACTTGGACTAAAAACAATTT CCATAAAATTTGGTCTGCCTGCGCAAAAGACCTGTGCAGGTCCTGTAAAATCCCCAGGACATTTA TCAACAGAGCTTGTACCGGCAGCTTATTATTCTCCGGCCACATTTCAATGGGAAAATTTTAATTA AGGCTGCGCTGGTCGATGGTCCAATGTCCGTCCGGCCCACTCACCACTAAATCTCGAATGTCAAT GAGACTGTGGTCACAAATTTTTGCTTCCTGGCATCCGCATTCGAA Found at i:10531280 original size:8 final size:8 Alignment explanation
Indices: 10531267--10531287 Score: 35 Period size: 8 Copynumber: 2.6 Consensus size: 8 10531257 TTACCAAGCT 10531267 GCCAGTCA 1 GCCAGTCA * 10531275 GCCAGTTA 1 GCCAGTCA 10531283 GCCAG 1 GCCAG 10531288 CTTGCTTGCT Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 12 1.00 ACGTcount: A:0.24, C:0.33, G:0.29, T:0.14 Consensus pattern (8 bp): GCCAGTCA Left flanking sequence: Indices 10530767 -- 10531266 ATGGAGAAATCCCAGCTCAAAGTTCGCTTTGTCCCCTTGCTCCAACATCCCATCTAAAAATGATA AATTATCCGAAAAATTTTGCAAACTCCTGAAAATTACGCATTAAATCATGCAGAAGAGGGGTGAA AAACGGGGTGGGGTCGGTGCGCCAGAGGGTCACCAAAGGGTTAAGCAGTGCCAAGTCATTGTATA GTTTACGACTGAGATTTCCCAAGTGCGAGCGCGGGGGAAGTTACGTTTTATCGCTCGCATGAGCT GCAATTTTATTACATTTTTATATTTATTTTTTGCGTGCGCTATGTGTTTCCTTTTGTGTTTTATT TAGCCAAAAGGAAAATATTTGTATGTTGCCCTACCGGTCACGTTTGCTTTTTGTACCGGCTCGTA AATTCGGGCAAACAAACTGCAATTGCACAAGGTGAAGGCATCAGCCAGCGATGAATACTCGCCCG TCCCACAGCTGGGCTATTTTGTATTTTCATTATTATTACCAAGCT Right flanking sequence: Indices 10531288 -- 10531787 CTTGCTTGCTAGCCAGGTGTAGTGGTCTTCTACTCGTCTCCTCGCTTGGCACATATTTCATGGCT ATGATTTACTCCATTGTTCAGGGCTGTTGGCCACCCCAAAAACAACACTAAAACAATACAGCTCG AGCAGAACAAGTGCCCAGTTTTTGGCAACGCCCCCGCAAGTCCACATTACCATCATCATCATCAT CATTGGCAACGGCATCGAATTGTTTGTTTTGGACTTGGGTCAAAACTATAGTTGAGACATGAACC TAATTTACTGGCTGAGTGCCTTTCATGCTGTTGGCCTTTTGCGAAGAATTTCCAAATGTCTTTAT CTCGTTCGTTGGCTCTCATTTCCTTTGAAAAGCCTCCTCTATCAGCCCATAAACCTTGTGCCTCG ATACACAAAGCTGGCCGGATTTATGCAACTTTAATTTTGGACCAATGCTTGGGCTAAGAAGTTTA GCATTTAGGTGTAAACAGGTACAATACACGTTTAAATGCGGTTTT Found at i:10532731 original size:10 final size:10 Alignment explanation
Indices: 10532718--10532741 Score: 41 Period size: 10 Copynumber: 2.4 Consensus size: 10 10532708 ATATGCGTGA * 10532718 ATATTAGTAT 1 ATATTAGAAT 10532728 ATATTAGAAT 1 ATATTAGAAT 10532738 ATAT 1 ATAT 10532742 GTATTTATTA Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 10 13 1.00 ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46 Consensus pattern (10 bp): ATATTAGAAT Left flanking sequence: Indices 10532218 -- 10532717 GCCATTAGGGCAAAATGCTCGGGCGGGATAATTGACACTCCAGTCTGTTGGTCTGAAGGGTGAAA ATGCCGCATCCCATCTCCGGTCGAAAACTATCGCCAGTACTTGCTCGGAGTGCGAATACTGCAAA ATGATGGGAATAACCCCTGGCGAAACCTTAGATCCTCCGGCTCCGCATCCTTGTCGCCTCCGTCG CCATGGCCCTCGCCTGCCCCATCCATTTGATGGCAGGTGAGTTGGTGCTTCTCGATACTTGGATC GTAGCAGATATTGTGACGCCAGAAGGAGGCGGTCATCTCGAAGTCCACAGCATTGATGGGTGAAA CCATGCAAACGACCACTATCTTGTCGCGTCCCTTTCTCGAGAGCTCGACATCCTTGCACATGGTT ATGAGGACATGTGAGTGCTCATTGGGACTGAGGACTCCCCAGCGGGGTTTTATATTGAACTTGCC ATGCACTGTACATTGCACCTGGTGATTTATCGATAATATGCGTGA Right flanking sequence: Indices 10532742 -- 10533241 GTATTTATTACCTTGTAGGTCACTGTCTTTTCGCCAACATTTTTGATGGTTATTTCATGCTTATT GTTGGTTTTTGTGAAAGTTAAAGTACTATTCGGTGAGATTTCTAGTGAATTTGAATTTGCAGACA TATTGGTTAAAAACGAATTTGAAAAACTATTTGTGAAGTACTTTTTACATTTACTTAAAATTTGG ATAAGATTAAAAAAAAAACGTGTATTTGTACAAAGATTTTGAGAAACAGCTAGACCTCCATTAAA ACAGCTGTTGAAAAGGCTACTTAGCTACTTAGGAAATAAATACTTATTCCTAAAAAGGAAAAATC TTAAGCCCTTGCTTAAAATTTTCTGAAAATCCCAACATTTTTTCCCCCTTGGGATTTTAACCCTG TCTTACCTATTGAGCCCTAATAATCACCTTTTAGTAACCGCATTGCGGAGGCTCTTCCCTTTACA CACACAATTGACCCCGAATGTGTGGGTACAAGTTGTGGGCCACGT Found at i:10533030 original size:8 final size:8 Alignment explanation
Indices: 10533017--10533033 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 10533007 TGTTGAAAAG 10533017 GCTACTTA 1 GCTACTTA 10533025 GCTACTTA 1 GCTACTTA 10533033 G 1 G 10533034 GAAATAAATA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.24, C:0.24, G:0.18, T:0.35 Consensus pattern (8 bp): GCTACTTA Left flanking sequence: Indices 10532517 -- 10533016 GAAGTCCACAGCATTGATGGGTGAAACCATGCAAACGACCACTATCTTGTCGCGTCCCTTTCTCG AGAGCTCGACATCCTTGCACATGGTTATGAGGACATGTGAGTGCTCATTGGGACTGAGGACTCCC CAGCGGGGTTTTATATTGAACTTGCCATGCACTGTACATTGCACCTGGTGATTTATCGATAATAT GCGTGAATATTAGTATATATTAGAATATATGTATTTATTACCTTGTAGGTCACTGTCTTTTCGCC AACATTTTTGATGGTTATTTCATGCTTATTGTTGGTTTTTGTGAAAGTTAAAGTACTATTCGGTG AGATTTCTAGTGAATTTGAATTTGCAGACATATTGGTTAAAAACGAATTTGAAAAACTATTTGTG AAGTACTTTTTACATTTACTTAAAATTTGGATAAGATTAAAAAAAAAACGTGTATTTGTACAAAG ATTTTGAGAAACAGCTAGACCTCCATTAAAACAGCTGTTGAAAAG Right flanking sequence: Indices 10533034 -- 10533533 GAAATAAATACTTATTCCTAAAAAGGAAAAATCTTAAGCCCTTGCTTAAAATTTTCTGAAAATCC CAACATTTTTTCCCCCTTGGGATTTTAACCCTGTCTTACCTATTGAGCCCTAATAATCACCTTTT AGTAACCGCATTGCGGAGGCTCTTCCCTTTACACACACAATTGACCCCGAATGTGTGGGTACAAG TTGTGGGCCACGTATTAATTACATTTCAACGGTCGCCGCTCAGGCAAATCAGAAAATCCAGTCAG CACCAACAAAACCGACAGCGAACAACAACAACATTTACAGCCAACAATTTGCTTTCAAAAGCAAC AAAAGGGGAGAAACAAAAGTTCCCACACGCACACACACAATCACTTGGATTTTGAGTTGGGCATT GCAGGGGCTTCACAATCCTTGGCCAGTTGAGCATTTCGAGCTTAGCCGGCGCTTAGGCTAAATGA CCAACCAGCAGGTGGTGGGTTTGGTTGGTAGTATCCAATGCTATG Found at