TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_3L assembled 2004-3-14 md5checksum:58b150ba3706a94f84f5242c20c22999 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 23771897 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Warning! 300 characters in sequence are not A, C, G, or T Found at i: i:23330161 original size:9 final size:9 Alignment explanation
Indices: 23330147--23330169 Score: 39 Period size: 9 Copynumber: 2.6 Consensus size: 9 23330137 CGAGATCGTA * 23330147 TCACACCGC 1 TCACACAGC 23330156 TCACACAGC 1 TCACACAGC 23330165 TCACA 1 TCACA 23330170 AAGTAATGGA Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 9 13 1.00 ACGTcount: A:0.30, C:0.48, G:0.09, T:0.13 Consensus pattern (9 bp): TCACACAGC Left flanking sequence: Indices 23329647 -- 23330146 GCTAAGCCCACAACACAAGCAGGCTGGTAATCAACCGAAAATAAATCGAGCCAACGCCTCCAATG ACTCAAGACATACAAGAAACGAATGTGCAGAGTCTAGCCACCGATCAGTGACAAAGAGCCGCAGC CACTCTTTAAAGTCGAACTGGAGCCATCGAGTCAGAAAAACAACAAAAATGAAGTACATCCTATA TATAAGCACAGTATTTACTGCACCGAAGAATAACCTTAGAAGAGCCACACAACCGCAGGCAACCT GTGCAGTGCACCAACTCCAAGAATATGGCCACACCAAAGCGTACTGCACCCTAAAATCCATCTTC GTCGTTTGCAGCGATGCCCACAGTACTGTAAACTGTCCTAAGGATAAAAACGACAATTCAATTAA GTTATGCAGCAACTGTGGCGAAAAACGCACAGCCAACTGGCGAGGATGCATTGTTTACAAGGAAC TCAAGAGTCGCCTAAACAAACGAGTGGATTCAACTCGAGATCGTA Right flanking sequence: Indices 23330170 -- 23330669 AAGTAATGGAACCGACTACAACTAACATCCCTTCGTCTGCCAGCTACCGAACAATGCCAAATTCT TCTTTTGCCAGTGTACTAAAATCAGGGATCCAAGAACAGACAGCAGTCACCTCCAGCGTCCAGCA TAAAATTCACCAAATAAACACAAATAAACACACAGAACATGCAACAGCAGCCTATTGGCGTTGAA GCGATTATGCTCTCGATGCAGCAAACCATGAAAGACTTCATGACCTTAATGCAAGAAACTATGCA AGAGCTTATGAGGAACCAAAACACCCTTATTCAAATGCTCGTTTCTGCGGCACAAGCGAGAACTT GCTCAGTTCTTAGCCGACAGAAACATTGACGTTATGCTACTCTCAGAGACTCACCTTACCGAAAA GTACAACTTCCAAATACCAGGATATAAATTTTACTTTACGAATCACCCGGATGGCAAGGCCCACG GAGGCCCTGGGATACCTATACGATTGCGAATTAAGCACCAATTTC Found at i:23330325 original size:10 final size:10 Alignment explanation
Indices: 23330310--23330331 Score: 44 Period size: 10 Copynumber: 2.2 Consensus size: 10 23330300 TAAAATTCAC 23330310 CAAATAAACA 1 CAAATAAACA 23330320 CAAATAAACA 1 CAAATAAACA 23330330 CA 1 CA 23330332 CAGAACATGC Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 12 1.00 ACGTcount: A:0.68, C:0.23, G:0.00, T:0.09 Consensus pattern (10 bp): CAAATAAACA Left flanking sequence: Indices 23329810 -- 23330309 AGAAAAACAACAAAAATGAAGTACATCCTATATATAAGCACAGTATTTACTGCACCGAAGAATAA CCTTAGAAGAGCCACACAACCGCAGGCAACCTGTGCAGTGCACCAACTCCAAGAATATGGCCACA CCAAAGCGTACTGCACCCTAAAATCCATCTTCGTCGTTTGCAGCGATGCCCACAGTACTGTAAAC TGTCCTAAGGATAAAAACGACAATTCAATTAAGTTATGCAGCAACTGTGGCGAAAAACGCACAGC CAACTGGCGAGGATGCATTGTTTACAAGGAACTCAAGAGTCGCCTAAACAAACGAGTGGATTCAA CTCGAGATCGTATCACACCGCTCACACAGCTCACAAAGTAATGGAACCGACTACAACTAACATCC CTTCGTCTGCCAGCTACCGAACAATGCCAAATTCTTCTTTTGCCAGTGTACTAAAATCAGGGATC CAAGAACAGACAGCAGTCACCTCCAGCGTCCAGCATAAAATTCAC Right flanking sequence: Indices 23330332 -- 23330831 CAGAACATGCAACAGCAGCCTATTGGCGTTGAAGCGATTATGCTCTCGATGCAGCAAACCATGAA AGACTTCATGACCTTAATGCAAGAAACTATGCAAGAGCTTATGAGGAACCAAAACACCCTTATTC AAATGCTCGTTTCTGCGGCACAAGCGAGAACTTGCTCAGTTCTTAGCCGACAGAAACATTGACGT TATGCTACTCTCAGAGACTCACCTTACCGAAAAGTACAACTTCCAAATACCAGGATATAAATTTT ACTTTACGAATCACCCGGATGGCAAGGCCCACGGAGGCCCTGGGATACCTATACGATTGCGAATT AAGCACCAATTTCTTGGTAATTGGCAAGAAGACTGCTTACAATGTACCTCTATAGACCTCCAATG CCATAACGGTGCTCTCACTCTGGCTGCTGTCTATTGCCCACGAGTGGAACTCGTGTTTTGCCTGC GATAAGAACCACTGAACATGTGCCGTCATCATGGCCAAAACGGTG Found at i:23331233 original size:8 final size:8 Alignment explanation
Indices: 23331220--23331238 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 23331210 ACTCGGCTGT 23331220 AATGAGTG 1 AATGAGTG * 23331228 AATGAGTT 1 AATGAGTG 23331236 AAT 1 AAT 23331239 AGCATCGATT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.42, C:0.00, G:0.26, T:0.32 Consensus pattern (8 bp): AATGAGTG Left flanking sequence: Indices 23330720 -- 23331219 TGCCATAACGGTGCTCTCACTCTGGCTGCTGTCTATTGCCCACGAGTGGAACTCGTGTTTTGCCT GCGATAAGAACCACTGAACATGTGCCGTCATCATGGCCAAAACGGTGTACACAAAAGCTGCATAC GCTTTTATAGACGCGTCTGAGAACGCATGTAGTTCGATTCTCCTTGAATCGTTGGTAACCTATCG TGGTATCTTGATGTTGATCATGTTAATGTCATTTCGGCAGGCTTGCCACCACCTTGCCAGCTTTG GTGGCAGTTTCGAGTCCCAGTATAAATCAAGAAGCCAAAGTTCCTGAAATAGGATCTTGAACTGG ACTACAATAGGCGCCAGAATTCATAAGGGATCAAAGATTTGTGAAACGTCAGACAATACTTGCCG TTTGGTAATGTCCGCTTGTGCAGAAAGCGATGGTTCGTTTTGTGGGAAGCATTAAATTCCAAAAC GCATTCCTAAGTGGATGCTTATCTTGATAAGCGTGACTCGGCTGT Right flanking sequence: Indices 23331239 -- 23331738 AGCATCGATTAATCAATTCATCTTCTGTATCGCCGCCAGTGAGAACATCGTCAACGTAGAAGCCC TCCACCAAAACTTTGGAGGCGATCGGAAATTTTTCTTGGCGGTCTCTTGCCAGCTGCTCCAATAC TCTGACGCGATTTGACGACACATCTTGACTATGTCCGCCGAAAACCCAAGCATATGCATCCGGAA TGTCAGGCAAACATGAAAAAAATTGCGTTGAATGCTGAATACAATGTGTTAGGCGTCATTAAGGG CTTGGCCGTTGACGTCTTTGTTAAAAGCATACGTGTGAACACATACAGATGTCTGCTATCACTGT ATGCATAGAAAAGGGCTGTTCGCTGTAGCGTTCTCCGCTCTCTCGCTCACTAACAAAAATTCGAG CCACCTCTAGAGCCACGGCGAATAAATCGTGTGCCAAAAAATCGTATGGCGTTAGGCATCTTGTT ATTCTAGTGTCTTTGGACACACTGTGGTGAGTTTTACCGGACTCT Found at i:23332020 original size:9 final size:9 Alignment explanation
Indices: 23332002--23332020 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 23331992 TCTCCAAATA 23332002 ATAGTCAAG 1 ATAGTCAAG * 23332011 ATAGTTAAG 1 ATAGTCAAG 23332020 A 1 A 23332021 GGGTTCGAGT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.47, C:0.05, G:0.21, T:0.26 Consensus pattern (9 bp): ATAGTCAAG Left flanking sequence: Indices 23331502 -- 23332001 GGCCGTTGACGTCTTTGTTAAAAGCATACGTGTGAACACATACAGATGTCTGCTATCACTGTATG CATAGAAAAGGGCTGTTCGCTGTAGCGTTCTCCGCTCTCTCGCTCACTAACAAAAATTCGAGCCA CCTCTAGAGCCACGGCGAATAAATCGTGTGCCAAAAAATCGTATGGCGTTAGGCATCTTGTTATT CTAGTGTCTTTGGACACACTGTGGTGAGTTTTACCGGACTCTATCCGTCCCATTCATGCTCATAC CAGACTGCGTTGACAGGAACTATTTCTGTCTCCCTTTATGAATACAAAAGAAACAGACAAAAAAG AAAAAACAATATGCCCAGCTTCTAGCAAATATAAAATGTACGTTACAATTGGAAATTAAAAAGGA ATACACGACATATAAGTTAACGCAAGTTCCACTTGCATCAGGGTTCTCGGCACTCGCTGCCGCAT ACCTCACCTTGATATGACAACCAACATGCTGTGGTTCTCCAAATA Right flanking sequence: Indices 23332021 -- 23332520 GGGTTCGAGTTTACGATTAGCTTTATTTTAAGATTCAGTTCGCGATCTGCTAGCGGTTCCGTTAT GTGTCCGTTCGACACTGGGGCCTCTTCTCCCGCCCCGCTGCTTTTATATCCGCTTCCCCCGTTGA CCCCTCACCCTGAGTGCGACCAACGGCACTTGTTCCGAATGCACACATACACAAACATGTTCCTA GACAGGCCCCGAGTCGCCTGCTGACGGGGCCCGAAAACACGAGAGCCGAGCGCTGGTGAGTCCTG ACGAAGAGCGCAAGAAGAGGGTTCTTAACTTACACGAACATGTTACTAGACAGGCCCCGAGTCGC CTGCTGACGGGGCCCGAAAACACGAGAGCCGAGCGCTGGTGAGTCCTGACGAAGAGCGCAAGAAG AGGGTTCTTAACTTATATATATTATTATTATTATATTAAATTATAATATAATATTATAAAAATAT ATATTTTATAATAATTGTAAGTGTTAGAACTATGTGGCGTGCCTC Found at i:23332587 original size:7 final size:7 Alignment explanation
Indices: 23332575--23332595 Score: 35 Period size: 7 Copynumber: 3.0 Consensus size: 7 23332565 CATAGCAGTC 23332575 ATTATTA 1 ATTATTA 23332582 ATTATTA 1 ATTATTA * 23332589 ATCATTA 1 ATTATTA 23332596 GCTGTACATA Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 7 13 1.00 ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52 Consensus pattern (7 bp): ATTATTA Left flanking sequence: Indices 23332075 -- 23332574 GGTTCCGTTATGTGTCCGTTCGACACTGGGGCCTCTTCTCCCGCCCCGCTGCTTTTATATCCGCT TCCCCCGTTGACCCCTCACCCTGAGTGCGACCAACGGCACTTGTTCCGAATGCACACATACACAA ACATGTTCCTAGACAGGCCCCGAGTCGCCTGCTGACGGGGCCCGAAAACACGAGAGCCGAGCGCT GGTGAGTCCTGACGAAGAGCGCAAGAAGAGGGTTCTTAACTTACACGAACATGTTACTAGACAGG CCCCGAGTCGCCTGCTGACGGGGCCCGAAAACACGAGAGCCGAGCGCTGGTGAGTCCTGACGAAG AGCGCAAGAAGAGGGTTCTTAACTTATATATATTATTATTATTATATTAAATTATAATATAATAT TATAAAAATATATATTTTATAATAATTGTAAGTGTTAGAACTATGTGGCGTGCCTCACATTTGCG AAAAGTTACGCGCTACAGTACAGTGACAGCAGTACCATAGCAGTC Right flanking sequence: Indices 23332596 -- 23333095 GCTGTACATAATAAGATGCGATACAGTTCCAAGCATTCTTTTTATATAAAATAGTTATAATTTTA AAAGCAGGATTTAAATATATTAAATATATTTTTTAAGAGCAAGACGTAGTTTCCAGCAATTGCAG ATGAAGTTCCAGTTGATCCAAGTCTGAAAAAATAAAAGCTTTTAATAACATGTCGTATATAAAAT AATATTTTGGTTAATAATTTTGTAATATTATACATAAGTTATTTTCGCTTATTTTGTAATTAAAA AAAAATAATATAAAATTTTTGGATGTTACAAACAACAAGTAGTAATTATATAATCTGAGATGAAC AAAATGCAATTTGTAAGGATACAATAACTGTTACTGTACACTCGATTAAATTAGTAAACATGACA TCTATAGTTAAGGAAACGAGTGTTTTCTTTCATTTAAGTCAAAATGAACGGAATTTCGCTGTTTT GTGTTTTAGCGCGGCACGGCTATCCAAAATTATACAAGGGAAACA i:23332685 original size:9 final size:9 Alignment explanation
Indices: 23332671--23332690 Score: 40 Period size: 9 Copynumber: 2.2 Consensus size: 9 23332661 AAAGCAGGAT 23332671 TTAAATATA 1 TTAAATATA 23332680 TTAAATATA 1 TTAAATATA 23332689 TT 1 TT 23332691 TTTTAAGAGC Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (9 bp): TTAAATATA Left flanking sequence: Indices 23332171 -- 23332670 CAACGGCACTTGTTCCGAATGCACACATACACAAACATGTTCCTAGACAGGCCCCGAGTCGCCTG CTGACGGGGCCCGAAAACACGAGAGCCGAGCGCTGGTGAGTCCTGACGAAGAGCGCAAGAAGAGG GTTCTTAACTTACACGAACATGTTACTAGACAGGCCCCGAGTCGCCTGCTGACGGGGCCCGAAAA CACGAGAGCCGAGCGCTGGTGAGTCCTGACGAAGAGCGCAAGAAGAGGGTTCTTAACTTATATAT ATTATTATTATTATATTAAATTATAATATAATATTATAAAAATATATATTTTATAATAATTGTAA GTGTTAGAACTATGTGGCGTGCCTCACATTTGCGAAAAGTTACGCGCTACAGTACAGTGACAGCA GTACCATAGCAGTCATTATTAATTATTAATCATTAGCTGTACATAATAAGATGCGATACAGTTCC AAGCATTCTTTTTATATAAAATAGTTATAATTTTAAAAGCAGGAT Right flanking sequence: Indices 23332691 -- 23333190 TTTTAAGAGCAAGACGTAGTTTCCAGCAATTGCAGATGAAGTTCCAGTTGATCCAAGTCTGAAAA AATAAAAGCTTTTAATAACATGTCGTATATAAAATAATATTTTGGTTAATAATTTTGTAATATTA TACATAAGTTATTTTCGCTTATTTTGTAATTAAAAAAAAATAATATAAAATTTTTGGATGTTACA AACAACAAGTAGTAATTATATAATCTGAGATGAACAAAATGCAATTTGTAAGGATACAATAACTG TTACTGTACACTCGATTAAATTAGTAAACATGACATCTATAGTTAAGGAAACGAGTGTTTTCTTT CATTTAAGTCAAAATGAACGGAATTTCGCTGTTTTGTGTTTTAGCGCGGCACGGCTATCCAAAAT TATACAAGGGAAACATAAAAATTTCAGGGCAAAGTCCTTCAGAAGCTCCACTTCAGAGACCAATA AAAACGCAATTAATCTGATCACTAAAGTTAAAAATTTAAAGTTAA Found at i:23333288 original size:10 final size:10 Alignment explanation
Indices: 23333273--23333292 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 23333263 TGACTGTTAT 23333273 TTTCCAATAA 1 TTTCCAATAA * 23333283 TTTCCATTAA 1 TTTCCAATAA 23333293 ATGTTCGGGA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.35, C:0.20, G:0.00, T:0.45 Consensus pattern (10 bp): TTTCCAATAA Left flanking sequence: Indices 23332773 -- 23333272 ACATGTCGTATATAAAATAATATTTTGGTTAATAATTTTGTAATATTATACATAAGTTATTTTCG CTTATTTTGTAATTAAAAAAAAATAATATAAAATTTTTGGATGTTACAAACAACAAGTAGTAATT ATATAATCTGAGATGAACAAAATGCAATTTGTAAGGATACAATAACTGTTACTGTACACTCGATT AAATTAGTAAACATGACATCTATAGTTAAGGAAACGAGTGTTTTCTTTCATTTAAGTCAAAATGA ACGGAATTTCGCTGTTTTGTGTTTTAGCGCGGCACGGCTATCCAAAATTATACAAGGGAAACATA AAAATTTCAGGGCAAAGTCCTTCAGAAGCTCCACTTCAGAGACCAATAAAAACGCAATTAATCTG ATCACTAAAGTTAAAAATTTAAAGTTAAATTAGGACAAGGGTCATATATTTGAAATATGAACAGT TTAATTTTATCTATTTGCAAGCCCGATAATCTGTTTGACTGTTAT Right flanking sequence: Indices 23333293 -- 23333792 ATGTTCGGGACCTCCTCATATCTTTCTGGTAAATGTATGTAATATTAGTGTAATATTTATTTATT ATTTCAAAGTTAAGTTTAAGAGTATTGGCAAATATGAAATATTCGAACAAAAAAAAATTTTCACG CAACACGGCTTCTGTTTTCTACGACTGTCTGACTTGACCAATCGTTTCTGAAAAACCAAACGACT TATCCGCTTTTCCACAATTCTCTTTTTCAACTTCTTCTACTTGACTTCTTGGCGACGACTCCCCT CTATCTTCACGATCTGCAACTTCTTCTTCGATCATTCCAGCCAACTACTCTCCTGATCCTATCGA TAGTGTCCTGCAGTGCTGCCACCTGTGCTATCGCGCTGCTATCACTATCATTGTTTACATGTATG AGAAAGTGGAGGAGAACTGAAATCTCACCCCTACCCTAAACTTATTCCTCATGACAACATGTGCG CCGAGGTGAACACCCTATCCTCACGTCCACGCCTAAGATTGCATG Found at i:23333826 original size:9 final size:9 Alignment explanation
Indices: 23333812--23333829 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 23333802 AATACAATTT 23333812 TACCCGTTA 1 TACCCGTTA 23333821 TACCCGTTA 1 TACCCGTTA 23333830 CTAGTAGGGT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.22, C:0.33, G:0.11, T:0.33 Consensus pattern (9 bp): TACCCGTTA Left flanking sequence: Indices 23333312 -- 23333811 ATCTTTCTGGTAAATGTATGTAATATTAGTGTAATATTTATTTATTATTTCAAAGTTAAGTTTAA GAGTATTGGCAAATATGAAATATTCGAACAAAAAAAAATTTTCACGCAACACGGCTTCTGTTTTC TACGACTGTCTGACTTGACCAATCGTTTCTGAAAAACCAAACGACTTATCCGCTTTTCCACAATT CTCTTTTTCAACTTCTTCTACTTGACTTCTTGGCGACGACTCCCCTCTATCTTCACGATCTGCAA CTTCTTCTTCGATCATTCCAGCCAACTACTCTCCTGATCCTATCGATAGTGTCCTGCAGTGCTGC CACCTGTGCTATCGCGCTGCTATCACTATCATTGTTTACATGTATGAGAAAGTGGAGGAGAACTG AAATCTCACCCCTACCCTAAACTTATTCCTCATGACAACATGTGCGCCGAGGTGAACACCCTATC CTCACGTCCACGCCTAAGATTGCATGTGTTTTGTTAATACAATTT Right flanking sequence: Indices 23333830 -- 23334329 CTAGTAGGGTATACTACATACATATACTATGTAATAGGTAGAAGAAAGCGTTTCCAACCATATAA AGTATATAAGTTCTTGATCAGAATCACGAGCTCAGTCGATCTGGTCTATCATTTGTCTATCCGTC CGTATGAACGTCGAGATCTCAGGAACATTAAAATACAGATTCTAGAGACGCCCACTCTAACGCCC ACAAAACGCCTTATACTGGCACTCCCACACCTTTGCAAAATGTTTTATTATTTATTCACATATAA TTACATTGGCCTACACCTATGAAAGATTACAGGCTTTACCCCATAACACCCGACTCCGATTCGCA AATAAGATTTATCATTATGAATGACGGGTACCTGATAGTCGGGAAACTCGACTATAGCATTTTCT CTTGTTTTTTATAGGGCTTCTTTCGGTTTTATGCAAACTTACAACTATTTCCACTCTTATGCTTA CTGCCACGGCCACACTTTTATACAATTTTAAAAATTTTTTCTCAT Found at i:23337096 original size:8 final size:8 Alignment explanation
Indices: 23337073--23337097 Score: 41 Period size: 8 Copynumber: 3.0 Consensus size: 8 23337063 GTAGCTTGCA 23337073 GATTGGGT 1 GATTGGGT 23337081 GAATTGGGT 1 G-ATTGGGT 23337090 GATTGGGT 1 GATTGGGT 23337098 TTCATGTTCG Statistics Matches: 16, Mismatches: 0, Indels: 2 0.89 0.00 0.11 Matches are distributed among these distances: 8 8 0.50 9 8 0.50 ACGTcount: A:0.16, C:0.00, G:0.48, T:0.36 Consensus pattern (8 bp): GATTGGGT Left flanking sequence: Indices 23336573 -- 23337072 AAGATTTCATTGGTTTAATGTGCTCACCTATGAGTTTAAACCTATTTCTTGGATGATGCGTAAGA TGCGTGGTATTGTATGTGAGCGGCAAATGTACTGGCCCTGTCTCTATCCCTGCGAGCCCAGCCGC CTCTGGAATTTCTTATTGGCGACACGGTGAAGGTCGGTGAAGGCTTGTGTTTGAAAGGGCGAATG TGGGCATTCCTTGTGAAGTGGTTCGTAGCTGGAGGCGACACTTCAGCTTCTTGTAAATTGGGCAG CCTCTGTAGTTTGCTGTGTGACCACAGTTTCCGCACCTTTTCTCACTGGGTATGTTCTTGTTTGC TGGACAATGTGCAGAGGAGTCAGTGTGGGGATCTCCACAAACTATAGCGCCCAGTGTGCAGTAAG ATCGGGTGTGGCCATATTCTTGACATTTCGTATATTGTATAGGAATCTTGCGCTTATGCGGTTCT TCTAATGTGATGCTACGATGCAGAAAAAACTGTATGTAGCTTGCA Right flanking sequence: Indices 23337098 -- 23337597 TTCATGTTCGAGCTCAACCTTAAAATGTGGTTGCAGCTTCCTGTCTTTGTTCAGAATGTTAAAAT CTGATTTGGCGGAAAATCCATTTTCCTGTAGCGCCTCCGTAATTTCTTCAGTCGTCAGCCCGGGA TCAATGCCCTTCAAAACAACTTGTAGACCCTGGCTATAAAAGCAGCCGGGCTGCTAGGTAAAATA ATTTTTATTTTTGACGTTTAGATACTTCGCGATCTCTCTGTAGCTGTCTTTCCTATTTGTTTGGA CTTTAATTTCGTGGATTACTAGTGGAGTAAAATGAAAATTCTTCCAATGAGGTCAACCAGTTGAT TTACTAGACTGCTTGATCTCATCTCACGGATCAAAATTGGTGGAGGCTTTGGGGTCTGTTCACGC CAGAAGGGCGCGAAGTTCTAACCGGCATTTTGCGAGCGAGCTTTCGCGCTGCTCTGTTCGCCTCC TCGCTCTCCGTCCTTTCAGCCGGCATTACAATACAATAAATGATT Found at i:23340377 original size:8 final size:8 Alignment explanation
Indices: 23340358--23340392 Score: 36 Period size: 8 Copynumber: 4.0 Consensus size: 8 23340348 TCGCGCACAC 23340358 TATTATTAT 1 TATTA-TAT 23340367 TATTATAT 1 TATTATAT * 23340375 TATTTTAT 1 TATTATAT 23340383 ATATATATAT 1 -TAT-TATAT 23340393 ATATACTTTA Statistics Matches: 22, Mismatches: 2, Indels: 3 0.81 0.07 0.11 Matches are distributed among these distances: 8 10 0.45 9 8 0.36 10 4 0.18 ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63 Consensus pattern (8 bp): TATTATAT Left flanking sequence: Indices 23339858 -- 23340357 TGTAGTAGCTTTAAGTTTCTGTGATTGGTTACTCATGGTAAAGAGGGAGAGAAAGAGCGCGTGCA TCTGGCGGGGTTCAGGTTCGATGACCGCTCGCTTACTGCATTTGTTATAATTGATATAAATGAGA AGTAATCGTTATTCTGTTGAAGAGATTTCCGACGTTTGTCTCGCTGGCACTTTCTCTCGCTGGCT CATAGTTATTTTAGGTGTTTTTTGTTTATTATTTGAGAATAATTAGGAAACACAAACTATATTAG TTATCGTCTTATTTGGAGACTCGTATATATTGCTCTGTTTATTAAACTTTGACTTGCTTTTTGTG GAGCTCGAATAAACAAACGTCTGTAAGTTATATTTATTGTTTTTTTTATTCCATATTCCCTTAAC CATTAATGTTAACAATTATACCCGTTACTTGTAAATTTCTATCGATTTGGAACAACACTTTTTTG CGACGCCCACAACCGCCCAAAAACGCCTAAACCGGTCGCGCACAC Right flanking sequence: Indices 23340393 -- 23340892 ATATACTTTATATGGTCAGAAACGCTTCCTTTTGCCTGTTACATACTTTTCAACGAAAAAATGCG AGTAACGGGTAAAAATACCTTTAACGCAAAAATTCTTTTTTGCTTCTTAACTATTGATAGTTAGT GGATGAATCTTTATAATTTTTTTTTATATATTTTTAAGTGGTTTGTAAACTTACATAATTAATGA TATCCAAGCCTTCTGTTGGAACGATAGTTTAATTGCAGTAGAAATATTGCAAGGTAAGTTCCTTC CATTGAAAATTGCAGTTTGTCCAGTTGAAGCTACATTTTCTACTGACATGAGCATAAGCCTCGAC ATGTCGATAATCTGAAAATATTTATTCATTAAATGTTGAAGCTTGTACCAGGTAAAAAATGAAGC CTATAAATAATTTATATTCTGTTACGTACGCCCTCTGTTGAGATACTAAGACGTAGAAGATTCCC ACATGAAACAGCCAGAATCTAAAGCAGAGGAGGGGTACAATTGAC Found at i:23340899 original size:7 final size:7 Alignment explanation
Indices: 23340884--23340901 Score: 29 Period size: 7 Copynumber: 2.6 Consensus size: 7 23340874 GAGGAGGGGT * 23340884 ACAATTG 1 ACAACTG 23340891 ACAACTG 1 ACAACTG 23340898 ACAA 1 ACAA 23340902 TTGTTGAGTC Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.50, C:0.22, G:0.11, T:0.17 Consensus pattern (7 bp): ACAACTG Left flanking sequence: Indices 23340384 -- 23340883 TATATATATATATACTTTATATGGTCAGAAACGCTTCCTTTTGCCTGTTACATACTTTTCAACGA AAAAATGCGAGTAACGGGTAAAAATACCTTTAACGCAAAAATTCTTTTTTGCTTCTTAACTATTG ATAGTTAGTGGATGAATCTTTATAATTTTTTTTTATATATTTTTAAGTGGTTTGTAAACTTACAT AATTAATGATATCCAAGCCTTCTGTTGGAACGATAGTTTAATTGCAGTAGAAATATTGCAAGGTA AGTTCCTTCCATTGAAAATTGCAGTTTGTCCAGTTGAAGCTACATTTTCTACTGACATGAGCATA AGCCTCGACATGTCGATAATCTGAAAATATTTATTCATTAAATGTTGAAGCTTGTACCAGGTAAA AAATGAAGCCTATAAATAATTTATATTCTGTTACGTACGCCCTCTGTTGAGATACTAAGACGTAG AAGATTCCCACATGAAACAGCCAGAATCTAAAGCAGAGGAGGGGT Right flanking sequence: Indices 23340902 -- 23341401 TTGTTGAGTCAGACTGAATGCAACAAAAAATTTGCAGTTAGACAATAATCGAGTGTCAGATGACC AATCCAGCAAAATTCTATTCCAGTAGCAGAGTTCATCAGTAGGGTATTGACTCCGAAAATAAGGG AAATAGTCAAAAACTAGTCCTTGACTCATGGAACCGATAACCGAAGTAAACCAGAGAAAGCTCTA TGCCGATGGCGACGTTCTCGACATCGTAATGGTGTCATTTCCTGGAGGAGAAAATCTAAATGTAA AAAGATCTGAAAATTTCTGTACAAAATTAAAGGTCGCGATTTCGTGATCCAGAGAGTCCAGAGAG AACATCTTCGCTTCGGATTTAAAGAGTCCTGGACTGAAATGTTACGGGGCAGGCAAAACGACACC TCGTGAAGGAATATCTACTTTTCTACAAATATGAAGTCAAGAGGGCGCCTTGTGAAGGAAGACCT GATTTTCAAAGCAATCGACAAGAACTTCCAAGATGGGCGGCAAAA Found at i:23341223 original size:9 final size:9 Alignment explanation
Indices: 23341209--23341226 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 23341199 GATTTCGTGA 23341209 TCCAGAGAG 1 TCCAGAGAG 23341218 TCCAGAGAG 1 TCCAGAGAG 23341227 AACATCTTCG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.33, C:0.22, G:0.33, T:0.11 Consensus pattern (9 bp): TCCAGAGAG Left flanking sequence: Indices 23340709 -- 23341208 AGCCTCGACATGTCGATAATCTGAAAATATTTATTCATTAAATGTTGAAGCTTGTACCAGGTAAA AAATGAAGCCTATAAATAATTTATATTCTGTTACGTACGCCCTCTGTTGAGATACTAAGACGTAG AAGATTCCCACATGAAACAGCCAGAATCTAAAGCAGAGGAGGGGTACAATTGACAACTGACAATT GTTGAGTCAGACTGAATGCAACAAAAAATTTGCAGTTAGACAATAATCGAGTGTCAGATGACCAA TCCAGCAAAATTCTATTCCAGTAGCAGAGTTCATCAGTAGGGTATTGACTCCGAAAATAAGGGAA ATAGTCAAAAACTAGTCCTTGACTCATGGAACCGATAACCGAAGTAAACCAGAGAAAGCTCTATG CCGATGGCGACGTTCTCGACATCGTAATGGTGTCATTTCCTGGAGGAGAAAATCTAAATGTAAAA AGATCTGAAAATTTCTGTACAAAATTAAAGGTCGCGATTTCGTGA Right flanking sequence: Indices 23341227 -- 23341726 AACATCTTCGCTTCGGATTTAAAGAGTCCTGGACTGAAATGTTACGGGGCAGGCAAAACGACACC TCGTGAAGGAATATCTACTTTTCTACAAATATGAAGTCAAGAGGGCGCCTTGTGAAGGAAGACCT GATTTTCAAAGCAATCGACAAGAACTTCCAAGATGGGCGGCAAAAAGTACACGGCCTCCGACAAA ACAGCCAATGTGATCAACACCGTGGAAAAAACCTTTAATTTCATCGCGGTGTTTCTGTTTCTGGT TATTGAGATAAGTTAATATTGATTAGGTCAGTGCAGCGGTCGTTACCATTACCATAAATTGGAAA GGATTGTATCCAGCATGCCGCAACTTCAATAAATTACATTGTGATAGGCGAATTCCACTTAGCAT ATATAAACAGTGCAGTGACAATGATATTCAGCAAATTAAATTTACATAATATAGGCCGAGCATAA AACAGCCGGCAAAAGATGCAATTGAAAATATTCTTTGCAAATAAT Found at i:23344171 original size:7 final size:7 Alignment explanation
Indices: 23344159--23344173 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 23344149 GTATTACAAA 23344159 AGAAGTT 1 AGAAGTT 23344166 AGAAGTT 1 AGAAGTT 23344173 A 1 A 23344174 TTCTAACATA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.47, C:0.00, G:0.27, T:0.27 Consensus pattern (7 bp): AGAAGTT Left flanking sequence: Indices 23343659 -- 23344158 GCGTTATTGTGTCCAAAGGGCACCCACTTAGAGTGTAAGTCGTGCGTATTTTGTTGACACGACAA AAGGTCATAACTTTACATTTGGAGCCATTTAAGTCTAATACGTTATCACGGCACCATATTTGAAA TCGGTCTAGATCTGATTGTAAGTCCAAATGGCACGAAGTGTCCTTGTACTGGAGGCATAATTTAA CATCGTCTGCGTAAATATGTACACGCGAATGTTTTATTATTAAGGGGAGGTCGTTAATGAATAAG GTAAGATGGCTCCCTTGTGGAACACCGGATGTGACTCAGAGAATACAAGATAAAGAATTTTTAAA GAGGACTTGTTGTGTCCTGCCATTCAGATAGCTTGAAATTTAGAAGATTAACAGGGAAACCTAAA AGATGAAGTTGTCTTATTAGAAGCTAATGATTGACAGAGTCAAATGCTTTATTAAAATCAGTGTA GATGACATCTGTTTGAAGATTATTTTTGAAACCCTGTATTACAAA Right flanking sequence: Indices 23344174 -- 23344673 TTCTAACATACATTTATACATATACGTATGTATATATGTATGCAGAAGGCATTGACCACTTGAGC TGCAAAGTGCATGCTCAGCATTCCCACTCTCCGCGATCGGCATATGTATTAGCGTTAGATCGTAT TACTGGGGCGCTGGAGTGCTTACGTAGTTCTTTATGGTCTTTTTGGGTATTTGTATATTTATATT TATTATTACAAAGTGTCACAATGTATTGACGCTAAGTTATACCCAATCATTTATTGTATTGGTAG GGTAGATTAGTCCTCCTTTTATTTCTTTTAAAAGATTTCTTTCTTTTTAAAGAAGACGTGAATTT GTCTCCGACGTTCGTTTAAGTTTTTGATTAATAAAAATATTTATTTTTATTAACCAACAAACGGC GCAGTCGGTAGGATCCGCGTGTAAACATAATCTCTTAGAGCTAATAGATTAGTTCGAGATTAATA AAGCGCAACTCGTGGCGAACAAAGTTTCGTTTGGGCTTCAGTTTA Found at i:23344362 original size:8 final size:8 Alignment explanation
Indices: 23344351--23344367 Score: 27 Period size: 8 Copynumber: 2.1 Consensus size: 8 23344341 TCTTTTTGGG * 23344351 TATTTGTA 1 TATTTATA 23344359 TATTTATA 1 TATTTATA 23344367 T 1 T 23344368 TTATTATTAC Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65 Consensus pattern (8 bp): TATTTATA Left flanking sequence: Indices 23343851 -- 23344350 TAACATCGTCTGCGTAAATATGTACACGCGAATGTTTTATTATTAAGGGGAGGTCGTTAATGAAT AAGGTAAGATGGCTCCCTTGTGGAACACCGGATGTGACTCAGAGAATACAAGATAAAGAATTTTT AAAGAGGACTTGTTGTGTCCTGCCATTCAGATAGCTTGAAATTTAGAAGATTAACAGGGAAACCT AAAAGATGAAGTTGTCTTATTAGAAGCTAATGATTGACAGAGTCAAATGCTTTATTAAAATCAGT GTAGATGACATCTGTTTGAAGATTATTTTTGAAACCCTGTATTACAAAAGAAGTTAGAAGTTATT CTAACATACATTTATACATATACGTATGTATATATGTATGCAGAAGGCATTGACCACTTGAGCTG CAAAGTGCATGCTCAGCATTCCCACTCTCCGCGATCGGCATATGTATTAGCGTTAGATCGTATTA CTGGGGCGCTGGAGTGCTTACGTAGTTCTTTATGGTCTTTTTGGG Right flanking sequence: Indices 23344368 -- 23344867 TTATTATTACAAAGTGTCACAATGTATTGACGCTAAGTTATACCCAATCATTTATTGTATTGGTA GGGTAGATTAGTCCTCCTTTTATTTCTTTTAAAAGATTTCTTTCTTTTTAAAGAAGACGTGAATT TGTCTCCGACGTTCGTTTAAGTTTTTGATTAATAAAAATATTTATTTTTATTAACCAACAAACGG CGCAGTCGGTAGGATCCGCGTGTAAACATAATCTCTTAGAGCTAATAGATTAGTTCGAGATTAAT AAAGCGCAACTCGTGGCGAACAAAGTTTCGTTTGGGCTTCAGTTTATACAAAGCAGATCCGCAAA AGAATCTATGTGACAAAATATTTGTGAATAGTTATCTAACTCTCGATGTTGGATACTATTAATAC AAATTAAAAAACTGCAAGTGACCATTAAAGTGTGACCCACCAAAATAAATAAAAGGTGTGACTGT TACCAGGTCAGTGTTGTGTAGCCCATCTAGCATTGATTGGACCGC Found at i:23346672 original size:9 final size:9 Alignment explanation
Indices: 23346647--23346686 Score: 71 Period size: 9 Copynumber: 4.3 Consensus size: 9 23346637 CAAAAGAATT 23346647 AATTTAAGA 1 AATTTAAGA 23346656 ATATTTAAGA 1 A-ATTTAAGA 23346666 AATTTAAGA 1 AATTTAAGA 23346675 AATTTAAGA 1 AATTTAAGA 23346684 AAT 1 AAT 23346687 AGATTTCCTT Statistics Matches: 30, Mismatches: 0, Indels: 2 0.94 0.00 0.06 Matches are distributed among these distances: 9 21 0.70 10 9 0.30 ACGTcount: A:0.55, C:0.00, G:0.10, T:0.35 Consensus pattern (9 bp): AATTTAAGA Left flanking sequence: Indices 23346147 -- 23346646 ATGAAGTTAATTATTCCGCAATAGAAAAGGAACTCCTTGCTATTGTTTGGGCCACTAAATATTTC AGGTCCTATTTATTTGGTAGAAAATTCGAGATCCATAGTGATCACAGGCCATTGGTTTGGCTTGA TTCAATTAAAGAGCCAAGCATGAAACTTCAGAGATGGAAAATCAAATTAAATTAATTTGACTATC ATATCAAATATCTCCCTGGTAAAGAGAACCATGTAGCAGATGCTCTATCGAGAGTAAAAATTGAA GAAAACTTCCTAGGAGAAACCTCCAGTAACATTTCGTTACCAACACAAGCTACTATTCACAGTGC TCAAGAAGATAACCAATCTTACATTTCCTTAACGGAAAGACCAATTAATTACTACAACAGGCAGA TAGAATTTATAAAAGACGATAATACTACCGTAGAAACCAAAAGATAATTCATAAAAAAAAAAATT AAAATACATTACATAGAAATAACAAATGTCTATGCCAAAAGAATT Right flanking sequence: Indices 23346687 -- 23347186 AGATTTCCTTACATTTCAAAGCGCTTTTATAGAAATTGTCAGTCCGAATAACATAACTAAAGTAA TGAAATCAAACATCAAATTAAAACATATTCAGAATTTAAAGAAATAATTATAAAAAGCCACAGAG AACTTTTACACCCAGGAATAGAGAAACAAACTAACATTTTCAAAGAAAAGTATTATTACCCAGAC TACAAAAAGTATGTAACATATCCAAAACAGAACATAGAGATACTAAACTAAACTGTGAGTTAACA CCAGAAACTTTTAATCCCAGGGAAAAATATGTTATAGATTTTTATTTAATCAATAATAGAATATT CCTGTCATGTATTGACATATATTCCAAATATGCCGCCTTGATTGAAGTCAGCAGTAGAGACTGGC TGGAAGCAAAAAGAGCTCTCCAACGGCGCTCATTCCTTGTTATTTTTGTTATCTACCTACGTTAA GCTTGGGCGCTGCATTTTCGGCTGTCTGTCCCGCCAATTGCCACT Found at i:23348620 original size:8 final size:8 Alignment explanation
Indices: 23348607--23348624 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 23348597 CAGAGCATGC * 23348607 CATAACTG 1 CATAACAG 23348615 CATAACAG 1 CATAACAG 23348623 CA 1 CA 23348625 GTTATCGCTC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.44, C:0.28, G:0.11, T:0.17 Consensus pattern (8 bp): CATAACAG Left flanking sequence: Indices 23348107 -- 23348606 TGCGGTCATGTTTGAGGGATTCAGCGCTGGAAACTATCCGATCATTGGAGATTTCAAACAGCAAT TACGAAGCGGCTTTAGAGTTGCTTCAAAAAAGGTTTGATAATCGGCGTCTCGTTTTTCAGGCGCA CATCACCGAGATTCTGGGTTTAAAGGTAGTACGGAATAGTTCAGTGGCATCGCTCACATTCGTGC GTTGAAGGGTTTGGGCACCATTGAGCAAATCGCTGCATCATAGTGCAAGTGCTGCTGCAAAAGCT GGATGCGGCGAGCCAAGCTAAGTGGGAGAAGCGCTTGGAGGATCCGGTCTTTGCCAACCTTATTC CGTCGTGGGAATCGAAGGCTGCATTCCTGGAGCAGCGATGTAGGACTTTGGAGGCCGTGGATTGC GCCATGGCAACCTATGCGTCAGGCGTTCAGGTGGGCAGAAATCGTTCGACGCTAGTTGCTACCAC CCAAAATTCTCTTGGTTGCATGCTTTGCCATAGTGCAGAGCATGC Right flanking sequence: Indices 23348625 -- 23349124 GTTATCGCTCCCAATATCGCGGATCGCCAGCCAAGTTTTAATGTGAACATTGGGGACTGGATGAT TCCAGAAAACCTGCAGCTAGCTGACCCGGAATTTCATAAAGCTCAGCGTGTTGACCTGTTAATAG GAGCTAGCCTGTTTTATGAGCTCCTGTGCGTAGGTCAGATAAACTTGTTGCCAGGACTGCCCCTG CTTCAAAAAACTCGTCTGGGCTGGGTTGTGTCTTGCGGTAGCGCCTTAATAGCTTCACGCGTTCC TTCTTCAGCCAGCAAGGAAAACAGCATTGATGTTGAACTTGATTCACTTCTGCAGTGCTCTTGGG AGGTAGAAAATTGTCCCGGCCCAATAGTTCAAGCCACTAAGGAGGAGTTAGATTGCGAGGCCCAC TTTGTTAAAAATTACACCCGACTGCCAGCTGGCGATTACTCGGTACGGTTGCCGCTAAAACTCCA TTTCGACTCTTTACGAGATTCCTATCCTCAAGCTTTGCGGAGATT Found at i:23350209 original size:8 final size:8 Alignment explanation
Indices: 23350196--23350218 Score: 39 Period size: 8 Copynumber: 3.0 Consensus size: 8 23350186 AATTTTTGTT 23350196 AGAGAGCG 1 AGAGAGCG 23350204 AGAGAGCG 1 AGAGAGCG 23350212 -GAGAGCG 1 AGAGAGCG 23350219 CTACAGCGAA Statistics Matches: 15, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 7 7 0.47 8 8 0.53 ACGTcount: A:0.35, C:0.13, G:0.52, T:0.00 Consensus pattern (8 bp): AGAGAGCG Left flanking sequence: Indices 23349696 -- 23350195 TTCTGTGGACCCTTCTTTCACAAGTCGGATACTCGGAACAAGCCCGCGGTTAAATGCTACGTCTG CGTATTTATATGATTTGCCACCAAGGCAGTGCACCTGGAGCTGATCAAGGATCTCTCGACAGTTG CGTTTCTGTGCGGACTCAAGAGGTTCATATGCGCCCGACGGAAGCCGAAGCAAATTTGGTCAGAG AACGCCACCAACTTTGTCGGCGCCAAAAATGAACTTCTGGAACTTCGAAGGTTATTTCTCAGCAG CGAGCATCAAGGCTCCGTTCAGAATTTTTGCCTTTCGGAGACGATTAACTGGCGGTTCATCCCTC CACGGTCGCCCCATTTCGGTGGACTTTGGGAAGCAGCGGTTAAAACGGTCAAACATCATGTGGGT ACGGCCAAAGTCACTAGAATAACAAGATGCGTAATGCCATACGATTTTTGGGCACACGATTTTTT CGCCGTGGCTCTAGAGGTGGCTCCAGGCTCTCTCGAATTTTTGTT Right flanking sequence: Indices 23350219 -- 23350718 CTACAGCGAACAGGTCTTTTCTACGCATACAGTGATAGCAGACAACTGTATGTGTGCACACGTAT GCTCATGCATTGTAAATTTGACAAAATATGCCCTTCACCTTAGAAGTTCTTTGACTTTAAATCTA TATTATTTTTGATCAATTGGCACCATGCGAAAAATTCTTGTTTTGCATTGCCGTTATTTGCTAAT AACGTTATTATTATTTGAAAATAGATTAGAAATAGCCAAAACTATGTACATATTATCACAAAATA AATTTCAAAAATGACTTTATATAAGAATATTTGTCATTAGAGTATTCATCTTGCGGCGTGAGAAA AACGCCGCGAAAAAAAAATTAATTAAAAGGCAATGATTGTTGAGTGCTTGTGTCCGTACTTCGTG CCTCAAGATATGAACAAAGCAAAGACACTAGAATAATTCTAGTGTTTTTCATACGACTTTTGCAT TAAACAGTTATCATATTTTTATTTATTTTATAAATTTATATTTTC Found at i:23353227 original size:7 final size:7 Alignment explanation
Indices: 23353215--23353229 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 23353205 ATCGCTGCAT 23353215 CATAGTG 1 CATAGTG 23353222 CATAGTG 1 CATAGTG 23353229 C 1 C 23353230 TCCATCTAGG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27 Consensus pattern (7 bp): CATAGTG Left flanking sequence: Indices 23352715 -- 23353214 TGGCAGTGAAATGGGCGAGAGTTTCGATGAATTCATCGTTGAATTCAAGGCTAGTGTGCGCTCGG AAATAGCCAAACGCAATGTGCATTTCGCGCCGCACTCAACGCACTCCTCAAACGCAGCCGCGGCC GAGGCCGATGCCGTTGCCGCCTGTGCAGCTGCCAACGTTTGGCGGAGGCTACGCAAACTGGTCGG ATTTTTACTCCGTGTTCACGAGCATAATCGACAGCCATCCGGACCTCTCCAACATTGAGAATTTT CAACATCTGCGGTCATGTTTGAGGGATTCAGCACTGGAAACTATCCGATCATTGAAGATTTCAAA CAGCAATTACGAAGCGGCTTAAGAGTTGCTTCAAAAAAGGTTTGATAATCGGCGTCTCGTTTTTC AGGCGCACATCACCGAGATTCTGGGTTTAAAGGTAGTACGGAATGGTTCAGTGGCATCGCTCACA TTCGTGCGTTGAAGGGTTTGGGCACCACTGAGCAAATCGCTGCAT Right flanking sequence: Indices 23353230 -- 23353729 TCCATCTAGGTGGTCCGCCTTCCTCGCAGCCATATGTTCCGGTGTCTTCAAGCTCCCACACTGAG CCTTCTTCGACTTCTTCTACTCTAATTGCCCAGGATCTCGGTAGTGACCTTGTGCTGCTAGCCAC TGCAACCGTTCTAGTGCAGAATCGGTCGGAACTGTTCCTTTCCTGCAGGGCCTTGTTAGATTCTG GCTCTCAACTGCCCTTGGTCACCTCTCGGTTTGCAAATCAACTGCAACTTAAGAGGTCGAGGTCG TCCGGCTCCGTCACTGGAATCGGGGATTCCAATTTCGCGACTGATGGATTCTCGGTAGGAATTGC GATTCGGTCTGTCACTTCGGATTTCTCAACGAGCATAACAGCAGTTATCGCTCCCAATATCGCGG ATCGCCAGCCAAGTTTTAATGTGAACATTGGGGACTGGATGATTCCAGAAAACCTGCAGCTAGCT GACCCGGAATTTCATAAAGCTCAGCGTGTTGACCTGTTAATAGGA Found at i:23353310 original size:9 final size:9 Alignment explanation
Indices: 23353296--23353315 Score: 33 Period size: 9 Copynumber: 2.2 Consensus size: 9 23353286 CACACTGAGC 23353296 CTTCTTCGA 1 CTTCTTCGA * 23353305 CTTCTTCTA 1 CTTCTTCGA 23353314 CT 1 CT 23353316 CTAATTGCCC Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.10, C:0.35, G:0.05, T:0.50 Consensus pattern (9 bp): CTTCTTCGA Left flanking sequence: Indices 23352796 -- 23353295 TGTGCATTTCGCGCCGCACTCAACGCACTCCTCAAACGCAGCCGCGGCCGAGGCCGATGCCGTTG CCGCCTGTGCAGCTGCCAACGTTTGGCGGAGGCTACGCAAACTGGTCGGATTTTTACTCCGTGTT CACGAGCATAATCGACAGCCATCCGGACCTCTCCAACATTGAGAATTTTCAACATCTGCGGTCAT GTTTGAGGGATTCAGCACTGGAAACTATCCGATCATTGAAGATTTCAAACAGCAATTACGAAGCG GCTTAAGAGTTGCTTCAAAAAAGGTTTGATAATCGGCGTCTCGTTTTTCAGGCGCACATCACCGA GATTCTGGGTTTAAAGGTAGTACGGAATGGTTCAGTGGCATCGCTCACATTCGTGCGTTGAAGGG TTTGGGCACCACTGAGCAAATCGCTGCATCATAGTGCATAGTGCTCCATCTAGGTGGTCCGCCTT CCTCGCAGCCATATGTTCCGGTGTCTTCAAGCTCCCACACTGAGC Right flanking sequence: Indices 23353316 -- 23353815 CTAATTGCCCAGGATCTCGGTAGTGACCTTGTGCTGCTAGCCACTGCAACCGTTCTAGTGCAGAA TCGGTCGGAACTGTTCCTTTCCTGCAGGGCCTTGTTAGATTCTGGCTCTCAACTGCCCTTGGTCA CCTCTCGGTTTGCAAATCAACTGCAACTTAAGAGGTCGAGGTCGTCCGGCTCCGTCACTGGAATC GGGGATTCCAATTTCGCGACTGATGGATTCTCGGTAGGAATTGCGATTCGGTCTGTCACTTCGGA TTTCTCAACGAGCATAACAGCAGTTATCGCTCCCAATATCGCGGATCGCCAGCCAAGTTTTAATG TGAACATTGGGGACTGGATGATTCCAGAAAACCTGCAGCTAGCTGACCCGGAATTTCATAAAGCT CAGCGTGTTGACCTGTTAATAGGAGCTAGCCTGTTTTATGAGCTCCTGTGCGTAGGTCAGATAAA CTTGTTGCCAGGACTGCCCCTGCTTCAAAAAACTCGTCTGGGCTG Found at i:23355693 original size:8 final size:8 Alignment explanation
Indices: 23355680--23355702 Score: 39 Period size: 8 Copynumber: 3.0 Consensus size: 8 23355670 AATTTTTGTT 23355680 AGAGAGCG 1 AGAGAGCG 23355688 AGAGAGCG 1 AGAGAGCG 23355696 -GAGAGCG 1 AGAGAGCG 23355703 CTACAGCGAA Statistics Matches: 15, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 7 7 0.47 8 8 0.53 ACGTcount: A:0.35, C:0.13, G:0.52, T:0.00 Consensus pattern (8 bp): AGAGAGCG Left flanking sequence: Indices 23355180 -- 23355679 AAGGATCTCACGCTTTTGAGGTTGCTGGTATAGACTTCTGTGGACCCTTCTTTCACAAGTCGGAT ACTCGGAACAAGCCCGCGGTTAAATGCTACGTCTGCGTATTTATATGATTTGCAACCAAGGCAGT GCACCTGGAGCGGACTCAAGAGGTTCATATGCACCCGGCGGAAGCCGAAGCAAATTTGGTCAGAC AACGCCACCAACTTGGTCGGCGCCAAAAATGAACTTCTGGAACTTCGAAGGTTATTTCTCAGCAG CGAGCATCAAGGCTCCGTTCAGAATTTTTGCCTTTCGGAGACGATTAACTGGCGGTTCATCCCTC CACGGTCGCCCCATTTCGGTGGACTTTGGGAAGCAGCGGTTAAAACGGTCAAACATCATGTGGGT ACGGCCAAAGTCACTAGAATAACAAGATGCGTAATGCCATACGATTTTTGGGCACACGATTTTTT CGCCGTGGCTCTAGAGGTGGCTCCAGGCTCTCTCGAATTTTTGTT Right flanking sequence: Indices 23355703 -- 23356202 CTACAGCGAACAGGTCTTTTCTACGCATACAGTGATAGCAGACAACTGTATGTGTGCACACGTAT GCTCATGCATTGTAAATTTGACAAAATATGCCCTTCACCTTAGAAGTTCTTTAAATCTATATTAT TTTTGATCAATTGGCACCATGCGAAAAATTCTTGTTTTGCATTGCCTTAACGTTATTATTATTTG AAAATAGATTAGAAATAGCCAAAACTATGTACATATTATCACAAAATTAATTTCAAAAATGACTT TATATAAGAATATTTGTCATTAGAGTATTCATCTTGCGGCCTGTGAAAAATTAATAAGGCAAGGA TTGTTGAGTGCTTGTGTCCGCACTTCGTGCCTCAAGATATGAACAAAGCAAAGACACTAGAAAAA ATATAAAAACTTCTACGTGGTTTAAATCAGATGCAAATGAAATACTTATTATTTCCCATATTCCT AGAGACATTATAAAAACGGCACTTTTTAACATCGCACCATATCCA Found at i:23356238 original size:6 final size:7 Alignment explanation
Indices: 23356229--23356245 Score: 27 Period size: 6 Copynumber: 2.6 Consensus size: 7 23356219 TACTTATAGA 23356229 AAATG-T 1 AAATGAT 23356235 AAATGAT 1 AAATGAT 23356242 AAAT 1 AAAT 23356246 ATTATACTCA Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 6 5 0.50 7 5 0.50 ACGTcount: A:0.59, C:0.00, G:0.12, T:0.29 Consensus pattern (7 bp): AAATGAT Left flanking sequence: Indices 23355729 -- 23356228 ATACAGTGATAGCAGACAACTGTATGTGTGCACACGTATGCTCATGCATTGTAAATTTGACAAAA TATGCCCTTCACCTTAGAAGTTCTTTAAATCTATATTATTTTTGATCAATTGGCACCATGCGAAA AATTCTTGTTTTGCATTGCCTTAACGTTATTATTATTTGAAAATAGATTAGAAATAGCCAAAACT ATGTACATATTATCACAAAATTAATTTCAAAAATGACTTTATATAAGAATATTTGTCATTAGAGT ATTCATCTTGCGGCCTGTGAAAAATTAATAAGGCAAGGATTGTTGAGTGCTTGTGTCCGCACTTC GTGCCTCAAGATATGAACAAAGCAAAGACACTAGAAAAAATATAAAAACTTCTACGTGGTTTAAA TCAGATGCAAATGAAATACTTATTATTTCCCATATTCCTAGAGACATTATAAAAACGGCACTTTT TAACATCGCACCATATCCAGACAAAGATAATAATATACTTATAGA Right flanking sequence: Indices 23356246 -- 23356745 ATTATACTCAAGATAATCAAGATTATAAACAAAACTCAAGAAAACCAATAATAAACAAATGCATT ACAGGAATATTAAATCAAATACCAACAGAATGTAGATATTCAAAAACACATAACATTATTGGAAT AACTTATGTAGAACCAAACATAATTTTAACTTGGAAATTATCAAAAATTGTATTAAATTAAAACT GTATGTACGGATTATGAGCGGAGTCACCCGGTGCTACAGCTGTCACAACAGCGGATTAACATTCT ATGTGTCGATGCTAATTGAACTCAACTGTATTCTTTCTAAAGGGAACTTGTAATTTTGCGGTCAT AGCGATAAGAAGTAGATTTCATGTGTACAAAAAAAAATGAATTTAACTGGAGAAATAAACTGAAG ATAAATCGTGCATATATGATTTGTATTTGCGAACCCCATTACTATGATGCCAAAGCAGTGAGGCA TCACAACTATTCACTGTATAACTAGTAGAGAAATTATAATAGAAG Found at i:23356267 original size:9 final size:9 Alignment explanation
Indices: 23356249--23356268 Score: 33 Period size: 9 Copynumber: 2.2 Consensus size: 9 23356239 GATAAATATT * 23356249 ATACTCAAG 1 ATAATCAAG 23356258 ATAATCAAG 1 ATAATCAAG 23356267 AT 1 AT 23356269 TATAAACAAA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.50, C:0.15, G:0.10, T:0.25 Consensus pattern (9 bp): ATAATCAAG Left flanking sequence: Indices 23355749 -- 23356248 TGTATGTGTGCACACGTATGCTCATGCATTGTAAATTTGACAAAATATGCCCTTCACCTTAGAAG TTCTTTAAATCTATATTATTTTTGATCAATTGGCACCATGCGAAAAATTCTTGTTTTGCATTGCC TTAACGTTATTATTATTTGAAAATAGATTAGAAATAGCCAAAACTATGTACATATTATCACAAAA TTAATTTCAAAAATGACTTTATATAAGAATATTTGTCATTAGAGTATTCATCTTGCGGCCTGTGA AAAATTAATAAGGCAAGGATTGTTGAGTGCTTGTGTCCGCACTTCGTGCCTCAAGATATGAACAA AGCAAAGACACTAGAAAAAATATAAAAACTTCTACGTGGTTTAAATCAGATGCAAATGAAATACT TATTATTTCCCATATTCCTAGAGACATTATAAAAACGGCACTTTTTAACATCGCACCATATCCAG ACAAAGATAATAATATACTTATAGAAAATGTAAATGATAAATATT Right flanking sequence: Indices 23356269 -- 23356768 TATAAACAAAACTCAAGAAAACCAATAATAAACAAATGCATTACAGGAATATTAAATCAAATACC AACAGAATGTAGATATTCAAAAACACATAACATTATTGGAATAACTTATGTAGAACCAAACATAA TTTTAACTTGGAAATTATCAAAAATTGTATTAAATTAAAACTGTATGTACGGATTATGAGCGGAG TCACCCGGTGCTACAGCTGTCACAACAGCGGATTAACATTCTATGTGTCGATGCTAATTGAACTC AACTGTATTCTTTCTAAAGGGAACTTGTAATTTTGCGGTCATAGCGATAAGAAGTAGATTTCATG TGTACAAAAAAAAATGAATTTAACTGGAGAAATAAACTGAAGATAAATCGTGCATATATGATTTG TATTTGCGAACCCCATTACTATGATGCCAAAGCAGTGAGGCATCACAACTATTCACTGTATAACT AGTAGAGAAATTATAATAGAAGGAGACAATAAAAGCTTTTAATTG Found at i:23357219 original size:7 final size:7 Alignment explanation
Indices: 23357207--23357220 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 23357197 CTTAGCAACA 23357207 ATAGAAC 1 ATAGAAC 23357214 ATAGAAC 1 ATAGAAC 23357221 CAAGAATGCC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.14, G:0.14, T:0.14 Consensus pattern (7 bp): ATAGAAC Left flanking sequence: Indices 23356707 -- 23357206 CTATTCACTGTATAACTAGTAGAGAAATTATAATAGAAGGAGACAATAAAAGCTTTTAATTGTTC TGTTCAAATAGAAAACATATTAAAACGGTCTATATCAATAACAATGTAACAAAATTATAACAATT ATCATATCTACATGCTAAAAAAATAATTAAAGAACACACTAATACATTCAACACAGTACAAATTA TTACATTAACTATACTTTCTATTATAATACTTGCACTATATTTTATTTATAAATATAAAGGCATT CCCAATAAATTAATTGTTAAATATTAAAAAAAGAATTCACAACATATAGGACAACAAAATAATAT AACAACAGAAATATAAATACAGTACTTGATACTAATCCTGTATTGTATCCTAGAATATCCGCCTG AGGACAGGCTAAATTTTAAGGGTGGGGTGGTGACATATGTCATGCTCAACCACATAACATATATC TACAACATATACCAGCCATTTTATATATTCTTTTACTTAGCAACA Right flanking sequence: Indices 23357221 -- 23357720 CAAGAATGCCTTAGCACATAAGATAAACAATTATTAGAACCCCAATTTCTTGGTGACAATAACAA ATTCGGCCGATGTAAACAATTTAACATAAACATCCGCACTCTTATTCGTTATTCCCACTAGAAGG GTGAAAACTGCTTACACAGCTTTAAGGGTGAAAACTAGCTCAAACTCGGCTTATCTGTATCCATG CGCAATCCGCTCAAGAGAGCGCCTAATTAACGTAAACATAAATAAGAGCCTATGTACGCTTTATA TGAAGAAGTAAATAAGCTCATCCAAGGGTTTGCTAAGCGTTCGCTTAGATTTATTCATAGATTTA GATTTTATTCATACTTCAATTGTGTAAGACGTGAATTTGTCTCCGGCGTTCGATTAAGTTTTTGA TTAATAAAAATATTTTTTTTTTCTAAACCAACAAACCGCGAAGTTATAACTATATATATGTCGGA GCACAATTATTATTTTCCATTTCGCGCAGAGAGTTTCGAACGCAC Found at i:23358362 original size:7 final size:7 Alignment explanation
Indices: 23358347--23358362 Score: 25 Period size: 7 Copynumber: 2.3 Consensus size: 7 23358337 ACTATTATGG * 23358347 AAATGCA 1 AAATACA 23358354 AAATACA 1 AAATACA 23358361 AA 1 AA 23358363 TTTAATTGAA Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.69, C:0.12, G:0.06, T:0.12 Consensus pattern (7 bp): AAATACA Left flanking sequence: Indices 23357847 -- 23358346 AATAATGTAATATGATAAAATACCAATGATTTCCCCGAACTGATGGAATTATTATTCTTGTGAAA TATTCTAGCACATCCACCAGCTTACAAAAGTATGCGCCGACATATATATGTCGCAGATCATTTAA ATGTAACGACATTTCTAGTAATTGCGCGTTTCTGCTTGGCACACGCCATGCAGGCGCCTTTTCTT TTTTTGATGCGCGGCAGAGAACCGTTAGATTTTCTCCCGAACGTAGTCATGTCGCGGGTAGGAGC GGGGGCTATGCGTGTAGAGTTAAGAACTACGCGTAATTCGGATTTTGTGAAGAGAGATTGGGTCA GTTAGTGATCGATCGTTGAGCAGAACAGACATGCCTCGCTCACGCGTCAGAGAACGTTATACAGA CAACGAGAATAGTGAAGAGGAAGAAGAGCGTCCTGATGACTCTTCGACATCAGAAGTGGGATCGG GTCCTATACCTTCAACAGTAGATGGACCATGGCGTACTATTATGG Right flanking sequence: Indices 23358363 -- 23358862 TTTAATTGAACTTGTGCGGGCCATACAAACAACGGCATCTGACGGGAGCAAAACATTCAACCGAG AAAAGCGAGTGGATCAGTGCAGTGTTGCATTACCTAAGGGATTCATAAATCATAGAGGCCAAATT TTCGAAATCACGTTTGATTCTGGAGCTGAATGCTCGCTGCTGAAAGAAAAGCTAAGTACTAAATT TTCTGGTAAAAGATTTAATAATGTTGTTATGTTAAAAGGCATAGGCAATAATGGAATATGTAGTA CAGGTTTTAAGTAACGTAAAAATTGACGATTATTGCATTGAAATTTTGTTTTATCTAATAGGCGA TGATCATATGCAAAACGATATTGTTATTGTTCGCGAAATATTAAATCAGGGTTTTGATATTGTCA TTTCGTCAGACCGATTTAAAATTTCGATAACCAAAAAAATTAATTTGTGTACCAGCAGTGATTCA GCCGATATTGATACTGAACTTTGATGAACAAGATAAAATAAAACT Found at i:23360512 original size:8 final size:8 Alignment explanation
Indices: 23360495--23360512 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 23360485 GTTAATAAAT 23360495 AATAATAA 1 AATAATAA * 23360503 AATTATAA 1 AATAATAA 23360511 AA 1 AA 23360513 AGACAATTGA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28 Consensus pattern (8 bp): AATAATAA Left flanking sequence: Indices 23359995 -- 23360494 GGGCCTTTTGAAATAATACAGGTGCTGGAGGGTGACAGGTACACTTTAAAGTCCTTAACCAATAA AAGAAATTATAAATGTGCACATGAAGATTTGAGAAAAATGCCAGAGGGGCAAGTGCCCGAGGAGT TGAATGTGTGTGAAGAGAGCGAAAACGAAAATGTTGAAGCCACTGAAGAAAGTGAAGCACACCAA TAAAGGTGATAAAAGATTTACTGCTGGCCAAAGAAAATGGCAGAGAAACAGGACCAGACAAATAA TGCAAGCACAAGTGCAAAACAAACTGATGTTTGTTTTGATCATGGCGTGTGGGTCATCAAATTTG TAATGATGAATGAAGAAGAATAATTGATTTTGTTAAAAATTACATTATAGTAAGAATTTTGTAAA GATATTGGTTAAGAAGGCTTGATACTGTTTTGTGAAATTAACTTGATAAGTTTATACGAGTTGAA ATGAAAATCTTGAATCTTTTGTTTGTGAAAGGAAAGTTAATAAAT Right flanking sequence: Indices 23360513 -- 23361012 AGACAATTGAATGAAACACGAGGTCGTGTTAGAAGATTACGCATGAACTCGAATTATTGCATCAT ATTATGTTTTGCTTCTTTGCATTGTGGTTGTCCGTCGTTTTTCTGAAAGTACCGTTGGAGCGGCG CAACAACGACGCGTCGCCTGTTTAGTTGCACGACGATGCGTCGCGACGTTGCCGCCAAGTGTGGT TCGCCATTTTGTTGCGGTTAAGCTTAAATTTGGTAACGGTTGGTGGTTTGAGTTAACTGGCCGGA TTATAGACTGCGTCATCTGGGTGCCACGTATGTTGGCCGGATTGTCGAGTTGTAAGCTGTGAGCT AGGCTAACAAAAGATGGACTGGCCGGTTTGAAAAACTGTGCGCTAGAAAAATTTATTGGAAATCC AGACCTTTAACGATTTATGTGTGAAGAAGATAAAATTATGATTGATTGCTTGAGAGTTTTTTGTA AATCGGATATCATGGCTTGAATGTAATAGGTGAAATGTTTTTAAT Found at