TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_3R assembled 2004-3-5 md5checksum:6b279651b3b268f11e0dd1d87ded0ccc Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 27905053 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28 Found at i: i:14339142 original size:7 final size:7 Alignment explanation
Indices: 14339130--14339147 Score: 36 Period size: 7 Copynumber: 2.6 Consensus size: 7 14339120 CAGTGGCTAG 14339130 GGCTTAA 1 GGCTTAA 14339137 GGCTTAA 1 GGCTTAA 14339144 GGCT 1 GGCT 14339148 ATAATTAAAA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.22, C:0.17, G:0.33, T:0.28 Consensus pattern (7 bp): GGCTTAA Left flanking sequence: Indices 14338630 -- 14339129 CGCTTGTTGAGACATTTCCGCTAAAATTGATTATCGCCCGGCGGGGCATAAAGTATAAAGTAATG CGATAGTCGCGAGGAAATTCCTAAATTTAAATTTCCACGGACCGACCGAAATAATTGCTCGGCCG TTTTTGCTCCCCCCTCGATTAAGTTGCATGTGTAACTTGGCTTGAATGTTAATTTAACGAATTCG GTTGCATGTTCCATCGGCTAGAGTTAGTATTGCTAGTTTTAGTTACCATTGGAATTTACGGTTTG TTATTTTTCATTTGGCATGCGCAAAATGCAGCTAAGTTAAATTTGTTCAAGGGGCCTATTGCCTG ATTGCTACGGATTGTTCATCACTTGCTTATCACATGCATCATCGGCGATCATCGGTTGCAACTTG CGAAAATCCGGAAATGGGCTCTATGCCGCCCGTCATCCAAATGCAGTTGAATTGAGTTCTAGGTG GGATTCACTACTTTGGACAACTACATTTGGCTAGTCAGTGGCTAG Right flanking sequence: Indices 14339148 -- 14339647 ATAATTAAAATGGCTCTTCACTTACCGCGCCAGTTGGTGGGAATTTGTTTTTTTTTGTGGGTATG TTGATTGAAGTATTGGTTCTTTTCTATGCTTACTTTCGGTTAGAATTATGAGAGAGAGAAACGTT GGCTGACTAACTAATTGATAGAAGAGGCTAATGAAAGGACTAACTTTAGGTTGCCGGGCTTTTGA GGGCCCAGTTCGGGTTGAGTGTTGATTGAAGAGCAGCTCCTCCGGGCACGGGAATGTTGATTGAT GATATCTCTCTCTTTCGATCTGGGGGGGAAGGGTTGCTCCATCGTCACACGTCCTCGAATTCTCA CAGTTTGCTTGATATTTCGCTCACTTGAAAAGTGTTTGCCTTACAATTGCTTACGATTACGAACT ACTTAGTGCTACACTAGATGGGCTGGCCAATTGAGCTTCAATAGGGGTTTCCTTTACAGTTTGTA CTCTTGGTAATTAATTTCTGCATTTTACATGGGTGCATATCTCGC Found at i:14340351 original size:7 final size:7 Alignment explanation
Indices: 14340339--14340352 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 14340329 AGTGATATTA 14340339 TATCTCT 1 TATCTCT 14340346 TATCTCT 1 TATCTCT 14340353 CTCTATTTCT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.29, G:0.00, T:0.57 Consensus pattern (7 bp): TATCTCT Left flanking sequence: Indices 14339839 -- 14340338 CGATATATATATGTATATCTACTTCTTGGCTAGTTGTGTTTAGTTATTCTAAGTAAGTTATGGGT AGCTTGTGGACCCTTTCGTTAGCTGTTCTTTATCTACCAAATATATATATGCAATGGCTTACAAC TCCTTTCCTGGCTTTGGCTATATAATACTATATGTTTATCTCAGTAATATTGTAGGGGGTTTGAC TGAAGTATTCGTGTATAGTATTATTTTGAAAAGAATTTCTACTTAGTTATTGTTATTGAATTGCT TGAGTTACGTATACTTCGAATTCTTAAGTCTAGAACGGTACAAGTGCTGTCTGAAATGCTCTGCC TTAAATCTATGATATTCTTACGATATTAGCATTATGCTATTGAATATTAATTAGTTGGTGTTGTT TCTTGCAGTTAGTTTGCTTATACATACTAGCGAATTAAACATAATACGTATTCTATTGTAGTAGT TAACATTTTAATACTCGTGGCAAACACTTTTGGTTAGTGATATTA Right flanking sequence: Indices 14340353 -- 14340852 CTCTATTTCTCTACTTTAGATTTGCAATTGATGGGATCAAAGTCCATTGGTAAGGTTTAAAAAAT GAAAGCTGATATTTTACGATTGATTGGCTAATATTACTTTAATCTACGTTTACTTTTGGGCGTTA ATAGTTAAGGGCATTTTAAACTCTTTTGAACCAACGTAAAAACTTTAAAATTGATGTTGACTCTT TTTGTTTTTCTTTTTTCGATATTTTGGTTGATTGCAGACATAGCAGAGAAGTGTGTTGATGTGTG TTGCTGATGATATGCCAATGTGAATTGGCTTTTGGTTTTTTGATTTCTCCGCAATTCTTTGCTCG TCTTCGATCTGGTGTTAAACTGCCCACTTTCTCTCTTCCTCCCCCATTTTGGTTTTACTCTTTTT CGGGGGGGGGGGGGGGGGTGGGGAGGCTTACCTAGGGGATGCGGGCGGAAGCGGAAGCGGTGGCG GCGGCAATGGCGGCGGCGGTGCCCGCACATCCGTTTCGATGTTCC Found at i:14340353 original size:9 final size:9 Alignment explanation
Indices: 14340336--14340364 Score: 35 Period size: 9 Copynumber: 3.1 Consensus size: 9 14340326 GTTAGTGATA 14340336 TTATATCTC 1 TTATATCTC * 14340345 TTATCTCTC 1 TTATATCTC * 14340354 TCTATTTCTC 1 T-TATATCTC 14340364 T 1 T 14340365 ACTTTAGATT Statistics Matches: 17, Mismatches: 2, Indels: 1 0.85 0.10 0.05 Matches are distributed among these distances: 9 9 0.53 10 8 0.47 ACGTcount: A:0.14, C:0.28, G:0.00, T:0.59 Consensus pattern (9 bp): TTATATCTC Left flanking sequence: Indices 14339836 -- 14340335 ACTCGATATATATATGTATATCTACTTCTTGGCTAGTTGTGTTTAGTTATTCTAAGTAAGTTATG GGTAGCTTGTGGACCCTTTCGTTAGCTGTTCTTTATCTACCAAATATATATATGCAATGGCTTAC AACTCCTTTCCTGGCTTTGGCTATATAATACTATATGTTTATCTCAGTAATATTGTAGGGGGTTT GACTGAAGTATTCGTGTATAGTATTATTTTGAAAAGAATTTCTACTTAGTTATTGTTATTGAATT GCTTGAGTTACGTATACTTCGAATTCTTAAGTCTAGAACGGTACAAGTGCTGTCTGAAATGCTCT GCCTTAAATCTATGATATTCTTACGATATTAGCATTATGCTATTGAATATTAATTAGTTGGTGTT GTTTCTTGCAGTTAGTTTGCTTATACATACTAGCGAATTAAACATAATACGTATTCTATTGTAGT AGTTAACATTTTAATACTCGTGGCAAACACTTTTGGTTAGTGATA Right flanking sequence: Indices 14340365 -- 14340864 ACTTTAGATTTGCAATTGATGGGATCAAAGTCCATTGGTAAGGTTTAAAAAATGAAAGCTGATAT TTTACGATTGATTGGCTAATATTACTTTAATCTACGTTTACTTTTGGGCGTTAATAGTTAAGGGC ATTTTAAACTCTTTTGAACCAACGTAAAAACTTTAAAATTGATGTTGACTCTTTTTGTTTTTCTT TTTTCGATATTTTGGTTGATTGCAGACATAGCAGAGAAGTGTGTTGATGTGTGTTGCTGATGATA TGCCAATGTGAATTGGCTTTTGGTTTTTTGATTTCTCCGCAATTCTTTGCTCGTCTTCGATCTGG TGTTAAACTGCCCACTTTCTCTCTTCCTCCCCCATTTTGGTTTTACTCTTTTTCGGGGGGGGGGG GGGGGGTGGGGAGGCTTACCTAGGGGATGCGGGCGGAAGCGGAAGCGGTGGCGGCGGCAATGGCG GCGGCGGTGCCCGCACATCCGTTTCGATGTTCCGCTTGTGCGGCG Found at i:14340652 original size:7 final size:7 Alignment explanation
Indices: 14340637--14340652 Score: 25 Period size: 7 Copynumber: 2.3 Consensus size: 7 14340627 CCAATGTGAA 14340637 TTGGCTT 1 TTGGCTT * 14340644 TTGGTTT 1 TTGGCTT 14340651 TT 1 TT 14340653 TGATTTCTCC Statistics Matches: 8, Mismatches: 1, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.00, C:0.06, G:0.25, T:0.69 Consensus pattern (7 bp): TTGGCTT Left flanking sequence: Indices 14340137 -- 14340636 TACAAGTGCTGTCTGAAATGCTCTGCCTTAAATCTATGATATTCTTACGATATTAGCATTATGCT ATTGAATATTAATTAGTTGGTGTTGTTTCTTGCAGTTAGTTTGCTTATACATACTAGCGAATTAA ACATAATACGTATTCTATTGTAGTAGTTAACATTTTAATACTCGTGGCAAACACTTTTGGTTAGT GATATTATATCTCTTATCTCTCTCTATTTCTCTACTTTAGATTTGCAATTGATGGGATCAAAGTC CATTGGTAAGGTTTAAAAAATGAAAGCTGATATTTTACGATTGATTGGCTAATATTACTTTAATC TACGTTTACTTTTGGGCGTTAATAGTTAAGGGCATTTTAAACTCTTTTGAACCAACGTAAAAACT TTAAAATTGATGTTGACTCTTTTTGTTTTTCTTTTTTCGATATTTTGGTTGATTGCAGACATAGC AGAGAAGTGTGTTGATGTGTGTTGCTGATGATATGCCAATGTGAA Right flanking sequence: Indices 14340653 -- 14341152 TGATTTCTCCGCAATTCTTTGCTCGTCTTCGATCTGGTGTTAAACTGCCCACTTTCTCTCTTCCT CCCCCATTTTGGTTTTACTCTTTTTCGGGGGGGGGGGGGGGGGTGGGGAGGCTTACCTAGGGGAT GCGGGCGGAAGCGGAAGCGGTGGCGGCGGCAATGGCGGCGGCGGTGCCCGCACATCCGTTTCGAT GTTCCGCTTGTGCGGCGTCTGCAAGTCCAAGGCCGCGTAATGCGAGTGGGCGTGGCCGTGCCCGT GGGCATGGGCGTGGCTGTGCAGGTGCCCATGACCGTGAGGGTGGCCCACGCCCAGCGGCGACTCG CGCGGCCGCAGAGTTGTGGGCGGTCCACGGAAAAGGGCGTATGGATTGCCAAAATAATCCTGTGA CGTCGCCATCATTTTGGCTCTGGCTGAAAGCACACAAAATGAGTGGTAAGAGAAAACAATTAGCT CGCAATTGACAAATTATGACAGGGCAGCGCTGCACAGCTGCTGAA Found at i:14341275 original size:7 final size:7 Alignment explanation
Indices: 14341263--14341284 Score: 44 Period size: 7 Copynumber: 3.1 Consensus size: 7 14341253 GAAAAAGTTC 14341263 TGTAGAA 1 TGTAGAA 14341270 TGTAGAA 1 TGTAGAA 14341277 TGTAGAA 1 TGTAGAA 14341284 T 1 T 14341285 ATCTTCTACT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 15 1.00 ACGTcount: A:0.41, C:0.00, G:0.27, T:0.32 Consensus pattern (7 bp): TGTAGAA Left flanking sequence: Indices 14340763 -- 14341262 GGGAGGCTTACCTAGGGGATGCGGGCGGAAGCGGAAGCGGTGGCGGCGGCAATGGCGGCGGCGGT GCCCGCACATCCGTTTCGATGTTCCGCTTGTGCGGCGTCTGCAAGTCCAAGGCCGCGTAATGCGA GTGGGCGTGGCCGTGCCCGTGGGCATGGGCGTGGCTGTGCAGGTGCCCATGACCGTGAGGGTGGC CCACGCCCAGCGGCGACTCGCGCGGCCGCAGAGTTGTGGGCGGTCCACGGAAAAGGGCGTATGGA TTGCCAAAATAATCCTGTGACGTCGCCATCATTTTGGCTCTGGCTGAAAGCACACAAAATGAGTG GTAAGAGAAAACAATTAGCTCGCAATTGACAAATTATGACAGGGCAGCGCTGCACAGCTGCTGAA ATTAAAAGCAAACATTGGGCGATTGCTGGCATGTCAATAAAGCATTTTTATAGCCACCGATTGCC TCTGACTAAACGATGGCATTTGAACGAATGCACTTGAAAAAGTTC Right flanking sequence: Indices 14341285 -- 14341784 ATCTTCTACTTTTGAGCAAATGGTTTTTGCTATGATTAAAAAACAAGTTTAGAGTTACTTAGCTA CACTTATGTATCATTAAACTTGTTTTTAGGAGAATACTTTAAAGATGAATATTTACTGGTATTCA TTACACATTTTTTTCTTAGTGAAGTTATAAGCCCTTTCTCGCGAAAAAATCTCTTCACCGCCTTT GTGGCTGTCCATTCATGTTTTTTAATTTAATAGTCGTGTCATGTAAATGGGCCCCGCACGCGACT GCATTTAATTCCGGTTGTGAAATGAAATTATTTTAACATGTTCGTCGTGATTGATACTCTTACCC TGCCCGTCACCAGGCAGGACCTGACCCTTAACTCGCAGCCCCCCAGCCCCCTGCTCACCCAAAGC GATCCAGATGCAATACACATGTCGGACACACCATAATTGACAGCAGAGGACATGCCAGCAGCGGA CTACACATGTAATTAAGTGCCGGCTTGTCGCTTAAAGTGCCGGCC Found at i:14341658 original size:8 final size:8 Alignment explanation
Indices: 14341645--14341660 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 14341635 CCTTAACTCG 14341645 CAGCCCCC 1 CAGCCCCC 14341653 CAGCCCCC 1 CAGCCCCC 14341661 TGCTCACCCA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.12, C:0.75, G:0.12, T:0.00 Consensus pattern (8 bp): CAGCCCCC Left flanking sequence: Indices 14341145 -- 14341644 CTGCTGAAATTAAAAGCAAACATTGGGCGATTGCTGGCATGTCAATAAAGCATTTTTATAGCCAC CGATTGCCTCTGACTAAACGATGGCATTTGAACGAATGCACTTGAAAAAGTTCTGTAGAATGTAG AATGTAGAATATCTTCTACTTTTGAGCAAATGGTTTTTGCTATGATTAAAAAACAAGTTTAGAGT TACTTAGCTACACTTATGTATCATTAAACTTGTTTTTAGGAGAATACTTTAAAGATGAATATTTA CTGGTATTCATTACACATTTTTTTCTTAGTGAAGTTATAAGCCCTTTCTCGCGAAAAAATCTCTT CACCGCCTTTGTGGCTGTCCATTCATGTTTTTTAATTTAATAGTCGTGTCATGTAAATGGGCCCC GCACGCGACTGCATTTAATTCCGGTTGTGAAATGAAATTATTTTAACATGTTCGTCGTGATTGAT ACTCTTACCCTGCCCGTCACCAGGCAGGACCTGACCCTTAACTCG Right flanking sequence: Indices 14341661 -- 14342160 TGCTCACCCAAAGCGATCCAGATGCAATACACATGTCGGACACACCATAATTGACAGCAGAGGAC ATGCCAGCAGCGGACTACACATGTAATTAAGTGCCGGCTTGTCGCTTAAAGTGCCGGCCAATTGC CACGAACGCGTAACGAGGCGACAATGGCCATCGGCCTTTGGCGTGGGAAATATCAGATATCAGAT AGCCGGGAACACTTGGCCGGCCAGCCACATGGGATGAGCCGAAGACAAGTGCCTCCTAATTGAGC GATAAAAATTATTAATTTATACGATGCCGTTTATCTTCAGTGAACAATTGTTAAATGGCTTTTAA GCTGGTTTATCTTGTAAATATTTAATAAGCTACTACAGCTTATAGCCATAAAATAGTACGGTCTT CTAATAAATCGGCAACTATTCAGACTGAATTGACCACGAATTTGATGAGAAAACTTAAGAACAAG TACTTTTAAGTACAAGATATAAAGAACAAGACTTTAAAAACAATT Found at i:14341852 original size:7 final size:7 Alignment explanation
Indices: 14341840--14341856 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 14341830 GGCGTGGGAA 14341840 ATATCAG 1 ATATCAG 14341847 ATATCAG 1 ATATCAG 14341854 ATA 1 ATA 14341857 GCCGGGAACA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.47, C:0.12, G:0.12, T:0.29 Consensus pattern (7 bp): ATATCAG Left flanking sequence: Indices 14341340 -- 14341839 TACTTAGCTACACTTATGTATCATTAAACTTGTTTTTAGGAGAATACTTTAAAGATGAATATTTA CTGGTATTCATTACACATTTTTTTCTTAGTGAAGTTATAAGCCCTTTCTCGCGAAAAAATCTCTT CACCGCCTTTGTGGCTGTCCATTCATGTTTTTTAATTTAATAGTCGTGTCATGTAAATGGGCCCC GCACGCGACTGCATTTAATTCCGGTTGTGAAATGAAATTATTTTAACATGTTCGTCGTGATTGAT ACTCTTACCCTGCCCGTCACCAGGCAGGACCTGACCCTTAACTCGCAGCCCCCCAGCCCCCTGCT CACCCAAAGCGATCCAGATGCAATACACATGTCGGACACACCATAATTGACAGCAGAGGACATGC CAGCAGCGGACTACACATGTAATTAAGTGCCGGCTTGTCGCTTAAAGTGCCGGCCAATTGCCACG AACGCGTAACGAGGCGACAATGGCCATCGGCCTTTGGCGTGGGAA Right flanking sequence: Indices 14341857 -- 14342356 GCCGGGAACACTTGGCCGGCCAGCCACATGGGATGAGCCGAAGACAAGTGCCTCCTAATTGAGCG ATAAAAATTATTAATTTATACGATGCCGTTTATCTTCAGTGAACAATTGTTAAATGGCTTTTAAG CTGGTTTATCTTGTAAATATTTAATAAGCTACTACAGCTTATAGCCATAAAATAGTACGGTCTTC TAATAAATCGGCAACTATTCAGACTGAATTGACCACGAATTTGATGAGAAAACTTAAGAACAAGT ACTTTTAAGTACAAGATATAAAGAACAAGACTTTAAAAACAATTATTTTTAGGTAGCCAAACCAG TCCTCTAATTGAGCAAAAAATATATTTACAATTATATAAAGCAAACAATAATCATTTGTTAAATG CGTACTAAGCTGTACAATCCAATATAAACATTTTAAGCTTATGGGGATATAATAAATCTTTGCCA ATTTGCACATTACAAAGCCTTTGTGTTAAACATATTCGAAAGGCT Found at i:14343961 original size:7 final size:7 Alignment explanation
Indices: 14343945--14343965 Score: 28 Period size: 7 Copynumber: 3.0 Consensus size: 7 14343935 ATCTTAATGG * 14343945 TATTAAA 1 TATAAAA * 14343952 TATCAAA 1 TATAAAA 14343959 TATAAAA 1 TATAAAA 14343966 ATTTTCCAAA Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33 Consensus pattern (7 bp): TATAAAA Left flanking sequence: Indices 14343445 -- 14343944 CAAAGCTAGATTTGAAATATACTCCTTGATAGTCTGTAAATATGCACAACCCACATAAATCTCAA TAAACGATAGCCTCCGCTATTATTTTGACGGCCACTGTATGTACGCACCCTAACTCTCGAAAGTG AAGGAAATGTGGAGCAATAGCGTCAAGTGCACGCAGTCTAGTGCACTGCATCGAGGATGAGGACT CCTGTGTGGCAGTCGGGAGGAGCTCCATATACTGCCATATGTGGCAATATAGGCCAGACGTTGTG GGCCGACCAAAACACCTTAACGCAATGGTGTCACCTACTGAACTGAGCACTGAATTCCGAGCGCT AAGCGTCGAGAATCAAACGCCCAAAGCCAGTGATGATAAAATATTTGCAAAACAAAAATGTTTGG GAAACTAAAATTTATGAAAACTATACGTATTTTCTTTGCAGAAATAAATCCGTGAAATGCAAGCT ATTTTATATGACAGTAAAATTAAAAACAAAAATCAATCTTAATGG Right flanking sequence: Indices 14343966 -- 14344465 ATTTTCCAAACTAATAAATATAAATATAAATAAATACACAATGAATTTTTAAATATTGTTAAAAT GACAGTATGAGCCTCTGTTTGTTGTTTAAGTGGGATTACGAATTTTTTTGCTATTGTAAAAGTTT AGGTATGTGGAAATTCTACAAACATACAACTCGTTTATTCTCCCTAATTATTTATCCATTATTTT TAGTGATTTAAAGCCAAATTGGCAGAGCTGCTGACTAGAATGCCCGTCGGAGTGTTTGGGGTATC AGGCAAAGTAATCTCTGCTCTGGAACGCTTTTACAGCGCTGCGCTCAGGGGCTGTTAATGAGTCA AGATATGATGCATTTGTGGGTGTGAGTGTCTGAATAAGTGTGCGTGTGTGTGTGTGTGTGTGTGC GTTGTCCTAAGTGCGTTGGCGTCAAGTTAAAAGCCGCTAGACGGCAACAATGGCAGCGGACAACA AATGCCGACGGTTTTTGTTGCCTACTTTTGTGCGCCGCTGAGACT Found at i:14345759 original size:10 final size:10 Alignment explanation
Indices: 14345744--14345763 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 14345734 ATCGAATGAC 14345744 TGTTTCTTTG 1 TGTTTCTTTG 14345754 TGTTTCTTTG 1 TGTTTCTTTG 14345764 GCCGGGGTTT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.00, C:0.10, G:0.20, T:0.70 Consensus pattern (10 bp): TGTTTCTTTG Left flanking sequence: Indices 14345244 -- 14345743 ACTTTTGCCGAGGCGTCTTCCCATTTTTTGCAGTAACTTTTCCGGAGCTCCCACTCGGGAGACGT TTGCTGACCCGCAGGCGGAGCAGGCAGCCTGAAAGATAATCCTTTTTCCGGCTTTATTGCTTTAT AGCGCTGGTGACGCTTTAAGACGCAAATAAATTGAATTTGCGGCCAAGACAAATCTTCTTAGTCC TGGCTGTTGCACTGAGCAAAATAAATTCCAAAGGATATGCGGTACTAAATGGATCTTTTCTACTA CGAAGAATTTTCTATAGTCATGGCATATGAGCAAGAACCTATTCAGAATATTTGTTTAGTTGAAA ACAAGTTTTTATTAACTAGTTTTGCTTAGTTTTTAAAAACGAAATACAATTTTTTTTCACAGTAC CATAACTTTGGGGCAGCCCCGCCAGCTGTGCACTTGTTTAGTAATATGCTTCATTTGTTAGCTGA TTTGTGCAGTACCTCCTCCATTAGCTCCTTTTGCCATCGAATGAC Right flanking sequence: Indices 14345764 -- 14346263 GCCGGGGTTTCTTTGCTTGCGAAATGGCTTTGAATGTTTGCCCTCTCGACTATTTGATTAGCCGT GCTGGATATTTGATTTTGTTTTTGTTATTACATAATGCTCAAATAGAGAGAGAGAGAGAGAGAGG GAGTGCACTTTTGGGGGCGGGAAAAGCTGATACCCGGCAAAATCCCCGCCTGCACCGAAAGCCCC ACTTATGACAATTTTTGGACTGCAGTCATGTGCGTGGCAGGCGATGGTGCTCTGTGTTCCGGTTT GTTTGCATGCAATTCCGTAAAGTCCTGTGCGTGCATTCAGGTTATTCCGCCAGCTCAGGCGTTTG ACATGAAAAATGCATTTTATTGGGATTATTTTTATAACGTGTCCAACCTCAGGGTCCACGCCGCA ATTAAATCGGGCGTCATTAAAGCTTTCCGCGACGCGCGTGTGTGTGTGTGTGTGTGTGTGCTCAA AATGCAAATTCAATTAATTTTACATTTATGCTTAGTTCGGGGCGT Found at i:14346319 original size:8 final size:8 Alignment explanation
Indices: 14346306--14346321 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 14346296 ACTTTTTAAT 14346306 TCAATTTC 1 TCAATTTC 14346314 TCAATTTC 1 TCAATTTC 14346322 GTGGATAAAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.25, C:0.25, G:0.00, T:0.50 Consensus pattern (8 bp): TCAATTTC Left flanking sequence: Indices 14345806 -- 14346305 CTCTCGACTATTTGATTAGCCGTGCTGGATATTTGATTTTGTTTTTGTTATTACATAATGCTCAA ATAGAGAGAGAGAGAGAGAGAGGGAGTGCACTTTTGGGGGCGGGAAAAGCTGATACCCGGCAAAA TCCCCGCCTGCACCGAAAGCCCCACTTATGACAATTTTTGGACTGCAGTCATGTGCGTGGCAGGC GATGGTGCTCTGTGTTCCGGTTTGTTTGCATGCAATTCCGTAAAGTCCTGTGCGTGCATTCAGGT TATTCCGCCAGCTCAGGCGTTTGACATGAAAAATGCATTTTATTGGGATTATTTTTATAACGTGT CCAACCTCAGGGTCCACGCCGCAATTAAATCGGGCGTCATTAAAGCTTTCCGCGACGCGCGTGTG TGTGTGTGTGTGTGTGTGCTCAAAATGCAAATTCAATTAATTTTACATTTATGCTTAGTTCGGGG CGTGGCCTTTCGCCAGATTTGCAGTCAATTTTCGCACTTTTTAAT Right flanking sequence: Indices 14346322 -- 14346821 GTGGATAAAAATATTAAGTGTCGTCCTTTGTGCTTTGTGGCCTGGTCGCTGTTAATGGCCAATTA TGTGCTGGGCTTTCAGGTGGGTCTGCATACACATACATATATATCTGGACATACTCCTACATGTC CATATTGGCACATGTCCGTGGCGGGATCTACATCGCGGTGTTGCACAAAGTGCCGCACGTGCTCG CCACTCCAACTTTGCGATTTCATCAGCAAACTGCTGCCATTGCACCACCCAACGCCACCTAGTTA CTGTATTAGTTTATAAATTCAATTGTTTTTGTAATGCAATATTAGTCGAGCACAAAGTGTTGCCT CGTTTAAATGGCACTGGCTAAATGACTTTAAAATAAGCTGGTGATTGAGATCATGGTCGAGAATA TGAATTTAACATACTATAGAATTAAGCTGATGTAGCTGCTTTTAAAATAGTTAACCTTAGTTTTT GAATTAAGGATACAATGCATAAATAAAAATAAAAATATTGCTATA Found at i:14346359 original size:7 final size:7 Alignment explanation
Indices: 14346347--14346360 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 14346337 AAGTGTCGTC 14346347 CTTTGTG 1 CTTTGTG 14346354 CTTTGTG 1 CTTTGTG 14346361 GCCTGGTCGC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.14, G:0.29, T:0.57 Consensus pattern (7 bp): CTTTGTG Left flanking sequence: Indices 14345847 -- 14346346 TTTTTGTTATTACATAATGCTCAAATAGAGAGAGAGAGAGAGAGAGGGAGTGCACTTTTGGGGGC GGGAAAAGCTGATACCCGGCAAAATCCCCGCCTGCACCGAAAGCCCCACTTATGACAATTTTTGG ACTGCAGTCATGTGCGTGGCAGGCGATGGTGCTCTGTGTTCCGGTTTGTTTGCATGCAATTCCGT AAAGTCCTGTGCGTGCATTCAGGTTATTCCGCCAGCTCAGGCGTTTGACATGAAAAATGCATTTT ATTGGGATTATTTTTATAACGTGTCCAACCTCAGGGTCCACGCCGCAATTAAATCGGGCGTCATT AAAGCTTTCCGCGACGCGCGTGTGTGTGTGTGTGTGTGTGTGCTCAAAATGCAAATTCAATTAAT TTTACATTTATGCTTAGTTCGGGGCGTGGCCTTTCGCCAGATTTGCAGTCAATTTTCGCACTTTT TAATTCAATTTCTCAATTTCGTGGATAAAAATATTAAGTGTCGTC Right flanking sequence: Indices 14346361 -- 14346860 GCCTGGTCGCTGTTAATGGCCAATTATGTGCTGGGCTTTCAGGTGGGTCTGCATACACATACATA TATATCTGGACATACTCCTACATGTCCATATTGGCACATGTCCGTGGCGGGATCTACATCGCGGT GTTGCACAAAGTGCCGCACGTGCTCGCCACTCCAACTTTGCGATTTCATCAGCAAACTGCTGCCA TTGCACCACCCAACGCCACCTAGTTACTGTATTAGTTTATAAATTCAATTGTTTTTGTAATGCAA TATTAGTCGAGCACAAAGTGTTGCCTCGTTTAAATGGCACTGGCTAAATGACTTTAAAATAAGCT GGTGATTGAGATCATGGTCGAGAATATGAATTTAACATACTATAGAATTAAGCTGATGTAGCTGC TTTTAAAATAGTTAACCTTAGTTTTTGAATTAAGGATACAATGCATAAATAAAAATAAAAATATT GCTATATATAATTTGATAAAATTTGTATCTTTCTGCTGGATGCCA Found at i:14346838 original size:10 final size:10 Alignment explanation
Indices: 14346821--14346840 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 14346811 ATATTGCTAT * 14346821 ATATAATTTG 1 ATAAAATTTG 14346831 ATAAAATTTG 1 ATAAAATTTG 14346841 TATCTTTCTG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45 Consensus pattern (10 bp): ATAAAATTTG Left flanking sequence: Indices 14346321 -- 14346820 CGTGGATAAAAATATTAAGTGTCGTCCTTTGTGCTTTGTGGCCTGGTCGCTGTTAATGGCCAATT ATGTGCTGGGCTTTCAGGTGGGTCTGCATACACATACATATATATCTGGACATACTCCTACATGT CCATATTGGCACATGTCCGTGGCGGGATCTACATCGCGGTGTTGCACAAAGTGCCGCACGTGCTC GCCACTCCAACTTTGCGATTTCATCAGCAAACTGCTGCCATTGCACCACCCAACGCCACCTAGTT ACTGTATTAGTTTATAAATTCAATTGTTTTTGTAATGCAATATTAGTCGAGCACAAAGTGTTGCC TCGTTTAAATGGCACTGGCTAAATGACTTTAAAATAAGCTGGTGATTGAGATCATGGTCGAGAAT ATGAATTTAACATACTATAGAATTAAGCTGATGTAGCTGCTTTTAAAATAGTTAACCTTAGTTTT TGAATTAAGGATACAATGCATAAATAAAAATAAAAATATTGCTAT Right flanking sequence: Indices 14346841 -- 14347340 TATCTTTCTGCTGGATGCCAGTTCCTTGTGGCATTTTGCAGTGGGAAATAGAAATATCTTACCAT TAGCTTAGAGCATTTTAATTAAATATTTCAAAAGCGCCCATCTCTAATAAAACCAAAGTGACGCC ATTAATAAAGCGCTTCTGGCAAATCCGCATCGGAATTGGCCAAATATTGGTGGCCACGCCTGTCA GCCGCACCACAAATGTGGCAATCAAGTGGCGCGGCAGCCAGCGTTGAATGCAAAAACCCAAGCCG TTACTTGACTTTCAAATTAAGCGAGGGAGCTAAAAACTTTTATCGATAGACGCATGCCAAAGTTT GACCATTGGCAATTTGTAAAGACTCGCAGCATTTACAGCTGTCACAGCCCGCACTAGGGTTTTTT TTTGGCCAACCCGTGCTGCATAAATAAACTATTACGCAGCCGGAAAAGTTTTGGCCAGCTCCGGT TGGGAGTTAACCAAATATAATCTGCACTCGACCGGACAACATATT Found at i:14349039 original size:6 final size:7 Alignment explanation
Indices: 14349016--14349038 Score: 39 Period size: 7 Copynumber: 3.3 Consensus size: 7 14349006 CCAAGAAGAC 14349016 AAAGGCA 1 AAAGGCA * 14349023 AAAGGCG 1 AAAGGCA 14349030 AAAGGCA 1 AAAGGCA 14349037 AA 1 AA 14349039 GAGAGTGGCC Statistics Matches: 14, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 7 14 1.00 ACGTcount: A:0.57, C:0.13, G:0.30, T:0.00 Consensus pattern (7 bp): AAAGGCA Left flanking sequence: Indices 14348516 -- 14349015 AAGTGCCTGCTGTTTTGGACAGCGTGCGAGTGGAGGTCCTTAAAGGGTCCTATTAGCAGGACCTA ATAGGCAGACATGAGCGCATGGAGACGGATATGGGATAAATATAGTGAGAGAAGGTCTAGAGTAT ATGCAGTTTAAGGGCAGCAACTACCCTTCTAAGAACGTTCAATGGGCAACGTTGCGTATGAGTGA TTTTTTGTAAGTCCCGCAAATATTTAATTGTTCTTTCTTTTAAACATAATAATTAGTATATCCTT GGTGGAAAAAAATCGATTGAATGGCTAATTTGTAATGCAAATGTGTGGTTGCACTTAACAAGGCG CTACTTAACTTTTATCCGGAAGTAAAATGAAAGGAACAAAAAGTTCGAGCCACATATTGACAAGG CAATTAAATTTTTAATTACCATGTGTTCAAATAGTTGGTGAACTTTACGTTCCGCTGTACAGACA TTAAAAATTATTAACAGAATTAATGCGAAAAGTTGCCAAGAAGAC Right flanking sequence: Indices 14349039 -- 14349538 GAGAGTGGCCAAAACCACAAGAACTTGGCCCCGACATCAAAGCAAACAGCAGACGGAATCCAAGG CATCAAACAGACAAAGAGCCGAGTTAAAGTTTCCGGCTGTCGCTTTTGGCGCCTTTTTTGCACAC TTTTGGCCAAAAAAAAAAAAGAATGGTGCGCCAGTGTTAATACATTATTCATGTGACCAGCAGAG TTTTCAACGCTCTGTCCTGCCATTTTTCTTTAAGAGCTTCCGGCAATTAAGGGGCGTCAGTGGGT AAACTTTAAATCGATCCGATCAGCAATTCATTGAATCTTAAATAATGTATGCCCTTTAAAGCGCA AAGTAAAATGTTTGAAAAACTTTCAATTTAATATGCATCATATGTATATGGAAAACAGTACGCTT TTAAAATATTTCAAATAGAATTCAGTTGCATCGTCTACAATCTCTTAATTAAATCTAAGCCAGTT TATAAACACTCCACCTAAAAATGTTAAGTCAGTTATCAAGATACA Found at i:14349754 original size:7 final size:7 Alignment explanation
Indices: 14349742--14349758 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 14349732 CAGTGGCGGG 14349742 GGCAGGA 1 GGCAGGA * 14349749 GGCAGGG 1 GGCAGGA 14349756 GGC 1 GGC 14349759 GTGGCTGAAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.18, C:0.18, G:0.65, T:0.00 Consensus pattern (7 bp): GGCAGGA Left flanking sequence: Indices 14349242 -- 14349741 GCTCTGTCCTGCCATTTTTCTTTAAGAGCTTCCGGCAATTAAGGGGCGTCAGTGGGTAAACTTTA AATCGATCCGATCAGCAATTCATTGAATCTTAAATAATGTATGCCCTTTAAAGCGCAAAGTAAAA TGTTTGAAAAACTTTCAATTTAATATGCATCATATGTATATGGAAAACAGTACGCTTTTAAAATA TTTCAAATAGAATTCAGTTGCATCGTCTACAATCTCTTAATTAAATCTAAGCCAGTTTATAAACA CTCCACCTAAAAATGTTAAGTCAGTTATCAAGATACAAACAGGCACGCATTCACTCCATTCTTCA CACCAGCAAAAAACCGGAAACATGAATAAATTCCGTGTTAATAAACATTCATGCCCGCAACCAAA TCAGATTTGCATTTTTCAAATATTTTACAAAACTAACCAAAATGGCAGCTAAATTGCACTCTCCC ACGCATTCGCACTCGCTGGCGTCCGTACAAAAATGCAGTGGCGGG Right flanking sequence: Indices 14349759 -- 14350258 GTGGCTGAAAGGGGGGCTTGGGGGGAAAGGAGAAAGGTACGGGAGAGAAAGTGACATTGCTAACT CGTGGATGTCGACAACGCTAGCGGAACGAACGCCGCTGGACAAGCTCAAAATGAAAGGCACGCGC CCGCCAGCAAGGAAAAAAGGATATCGAAAAGGATATAAAGTTTTAGAAATAGTTCGCTAGAATAT CCTGTAAAGATAGAAAATCACCTATTTTTACATAAATTTAATGCATACATACATTTGATATACAT CATATATATATATATATTCTATAGCATTTCTTTCTTTTATTATAATTAGCTTTAGTATTTGAATT CCTTTTTTTAGTGTAAATATTATTATTAATTATTATTTATATTATAACTTATAAGCCCCTTGGTC TAGTCGATGACATTTAAATGGAGCCAACCGAAAAGGGTATAAAATATATAGGAGAACGAGCACGA GTTGCGAAGTCTGGCTGACTGACAGGCCCAGTGCGAATAGAAAAT Found at i:14350117 original size:7 final size:7 Alignment explanation
Indices: 14350097--14350123 Score: 33 Period size: 7 Copynumber: 4.0 Consensus size: 7 14350087 TTTTTTAGTG * 14350097 TAAATAT 1 TAATTAT 14350104 T-ATTAT 1 TAATTAT 14350110 TAATTAT 1 TAATTAT * 14350117 TATTTAT 1 TAATTAT 14350124 ATTATAACTT Statistics Matches: 17, Mismatches: 2, Indels: 2 0.81 0.10 0.10 Matches are distributed among these distances: 6 5 0.29 7 12 0.71 ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59 Consensus pattern (7 bp): TAATTAT Left flanking sequence: Indices 14349597 -- 14350096 TTCCGTGTTAATAAACATTCATGCCCGCAACCAAATCAGATTTGCATTTTTCAAATATTTTACAA AACTAACCAAAATGGCAGCTAAATTGCACTCTCCCACGCATTCGCACTCGCTGGCGTCCGTACAA AAATGCAGTGGCGGGGGCAGGAGGCAGGGGGCGTGGCTGAAAGGGGGGCTTGGGGGGAAAGGAGA AAGGTACGGGAGAGAAAGTGACATTGCTAACTCGTGGATGTCGACAACGCTAGCGGAACGAACGC CGCTGGACAAGCTCAAAATGAAAGGCACGCGCCCGCCAGCAAGGAAAAAAGGATATCGAAAAGGA TATAAAGTTTTAGAAATAGTTCGCTAGAATATCCTGTAAAGATAGAAAATCACCTATTTTTACAT AAATTTAATGCATACATACATTTGATATACATCATATATATATATATATTCTATAGCATTTCTTT CTTTTATTATAATTAGCTTTAGTATTTGAATTCCTTTTTTTAGTG Right flanking sequence: Indices 14350124 -- 14350623 ATTATAACTTATAAGCCCCTTGGTCTAGTCGATGACATTTAAATGGAGCCAACCGAAAAGGGTAT AAAATATATAGGAGAACGAGCACGAGTTGCGAAGTCTGGCTGACTGACAGGCCCAGTGCGAATAG AAAATCGAGGGTCTGGTGGCTGGGTGGTTGGAGCCGGGTTGGTTTGGCGTTGGGTGGCAAGGACG GTAAGGAGGCGGAAAAAGCGGCGTGTAAATTTTCCAACTAAGCCACAGCGAGCAGAGCGACTGAC ACTCGCACACGACCAACTCAAACCAACTCAACTCATCGCAACGCAACGCAACTCAACTCGCTGCT CGCGCCGTATATCTTCATTAAAATGCAATGCATCCTTGGGAGAGCAATGGGTCCGCTGCACCACC TCCCCCCCCCCCCCCTTCTAGCCAACCCAACCCGCTGGCCATGGTCCCCAGCTCGTCCTGCAGGC CCCCAGTCCGTAGTCCCTGGTCCCTGGTCCCCGATTCTCGGTTCC Found at i:14350117 original size:10 final size:10 Alignment explanation
Indices: 14350102--14350128 Score: 40 Period size: 10 Copynumber: 2.8 Consensus size: 10 14350092 TAGTGTAAAT 14350102 ATTATTATTA 1 ATTATTATTA * 14350112 ATTATTATTT 1 ATTATTATTA 14350122 A-TATTAT 1 ATTATTAT 14350129 AACTTATAAG Statistics Matches: 16, Mismatches: 1, Indels: 1 0.89 0.06 0.06 Matches are distributed among these distances: 9 6 0.38 10 10 0.62 ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63 Consensus pattern (10 bp): ATTATTATTA Left flanking sequence: Indices 14349602 -- 14350101 TGTTAATAAACATTCATGCCCGCAACCAAATCAGATTTGCATTTTTCAAATATTTTACAAAACTA ACCAAAATGGCAGCTAAATTGCACTCTCCCACGCATTCGCACTCGCTGGCGTCCGTACAAAAATG CAGTGGCGGGGGCAGGAGGCAGGGGGCGTGGCTGAAAGGGGGGCTTGGGGGGAAAGGAGAAAGGT ACGGGAGAGAAAGTGACATTGCTAACTCGTGGATGTCGACAACGCTAGCGGAACGAACGCCGCTG GACAAGCTCAAAATGAAAGGCACGCGCCCGCCAGCAAGGAAAAAAGGATATCGAAAAGGATATAA AGTTTTAGAAATAGTTCGCTAGAATATCCTGTAAAGATAGAAAATCACCTATTTTTACATAAATT TAATGCATACATACATTTGATATACATCATATATATATATATATTCTATAGCATTTCTTTCTTTT ATTATAATTAGCTTTAGTATTTGAATTCCTTTTTTTAGTGTAAAT Right flanking sequence: Indices 14350129 -- 14350628 AACTTATAAGCCCCTTGGTCTAGTCGATGACATTTAAATGGAGCCAACCGAAAAGGGTATAAAAT ATATAGGAGAACGAGCACGAGTTGCGAAGTCTGGCTGACTGACAGGCCCAGTGCGAATAGAAAAT CGAGGGTCTGGTGGCTGGGTGGTTGGAGCCGGGTTGGTTTGGCGTTGGGTGGCAAGGACGGTAAG GAGGCGGAAAAAGCGGCGTGTAAATTTTCCAACTAAGCCACAGCGAGCAGAGCGACTGACACTCG CACACGACCAACTCAAACCAACTCAACTCATCGCAACGCAACGCAACTCAACTCGCTGCTCGCGC CGTATATCTTCATTAAAATGCAATGCATCCTTGGGAGAGCAATGGGTCCGCTGCACCACCTCCCC CCCCCCCCCCTTCTAGCCAACCCAACCCGCTGGCCATGGTCCCCAGCTCGTCCTGCAGGCCCCCA GTCCGTAGTCCCTGGTCCCTGGTCCCCGATTCTCGGTTCCCAATC Found at i:14350410 original size:10 final size:10 Alignment explanation
Indices: 14350395--14350414 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 14350385 CTCGCACACG 14350395 ACCAACTCAA 1 ACCAACTCAA 14350405 ACCAACTCAA 1 ACCAACTCAA 14350415 CTCATCGCAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.50, C:0.40, G:0.00, T:0.10 Consensus pattern (10 bp): ACCAACTCAA Left flanking sequence: Indices 14349895 -- 14350394 GCAAGGAAAAAAGGATATCGAAAAGGATATAAAGTTTTAGAAATAGTTCGCTAGAATATCCTGTA AAGATAGAAAATCACCTATTTTTACATAAATTTAATGCATACATACATTTGATATACATCATATA TATATATATATTCTATAGCATTTCTTTCTTTTATTATAATTAGCTTTAGTATTTGAATTCCTTTT TTTAGTGTAAATATTATTATTAATTATTATTTATATTATAACTTATAAGCCCCTTGGTCTAGTCG ATGACATTTAAATGGAGCCAACCGAAAAGGGTATAAAATATATAGGAGAACGAGCACGAGTTGCG AAGTCTGGCTGACTGACAGGCCCAGTGCGAATAGAAAATCGAGGGTCTGGTGGCTGGGTGGTTGG AGCCGGGTTGGTTTGGCGTTGGGTGGCAAGGACGGTAAGGAGGCGGAAAAAGCGGCGTGTAAATT TTCCAACTAAGCCACAGCGAGCAGAGCGACTGACACTCGCACACG Right flanking sequence: Indices 14350415 -- 14350914 CTCATCGCAACGCAACGCAACTCAACTCGCTGCTCGCGCCGTATATCTTCATTAAAATGCAATGC ATCCTTGGGAGAGCAATGGGTCCGCTGCACCACCTCCCCCCCCCCCCCCTTCTAGCCAACCCAAC CCGCTGGCCATGGTCCCCAGCTCGTCCTGCAGGCCCCCAGTCCGTAGTCCCTGGTCCCTGGTCCC CGATTCTCGGTTCCCAATCCCCAAACCTTCAATCGTGTAAGCGTCCGCGCGTGTAATGACAATGG TGGCGCGTGGCTTTGACTTTGACATGGCCGCCGGGCAGGACTTTGGCAGGACAACGCAGGACCAA CACCATCGCCTCCCAGCCCGACACCATATTTTTCAAATGCAATGCCCCGTGACCAAAGCTGCGGC TCGACCTCTCGCATCAACACGTACGTAAAAGTCAAATCAACTGGAGCTGTAAAATTGGAAGTCCG CCGTGAAAAATCGGTGTATGGGTATGGGGATGGGCATGGCAAGTT Found at i:14350601 original size:7 final size:7 Alignment explanation
Indices: 14350591--14350609 Score: 38 Period size: 7 Copynumber: 2.7 Consensus size: 7 14350581 CCAGTCCGTA 14350591 GTCCCTG 1 GTCCCTG 14350598 GTCCCTG 1 GTCCCTG 14350605 GTCCC 1 GTCCC 14350610 CGATTCTCGG Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.00, C:0.47, G:0.26, T:0.26 Consensus pattern (7 bp): GTCCCTG Left flanking sequence: Indices 14350091 -- 14350590 TTAGTGTAAATATTATTATTAATTATTATTTATATTATAACTTATAAGCCCCTTGGTCTAGTCGA TGACATTTAAATGGAGCCAACCGAAAAGGGTATAAAATATATAGGAGAACGAGCACGAGTTGCGA AGTCTGGCTGACTGACAGGCCCAGTGCGAATAGAAAATCGAGGGTCTGGTGGCTGGGTGGTTGGA GCCGGGTTGGTTTGGCGTTGGGTGGCAAGGACGGTAAGGAGGCGGAAAAAGCGGCGTGTAAATTT TCCAACTAAGCCACAGCGAGCAGAGCGACTGACACTCGCACACGACCAACTCAAACCAACTCAAC TCATCGCAACGCAACGCAACTCAACTCGCTGCTCGCGCCGTATATCTTCATTAAAATGCAATGCA TCCTTGGGAGAGCAATGGGTCCGCTGCACCACCTCCCCCCCCCCCCCCTTCTAGCCAACCCAACC CGCTGGCCATGGTCCCCAGCTCGTCCTGCAGGCCCCCAGTCCGTA Right flanking sequence: Indices 14350610 -- 14351109 CGATTCTCGGTTCCCAATCCCCAAACCTTCAATCGTGTAAGCGTCCGCGCGTGTAATGACAATGG TGGCGCGTGGCTTTGACTTTGACATGGCCGCCGGGCAGGACTTTGGCAGGACAACGCAGGACCAA CACCATCGCCTCCCAGCCCGACACCATATTTTTCAAATGCAATGCCCCGTGACCAAAGCTGCGGC TCGACCTCTCGCATCAACACGTACGTAAAAGTCAAATCAACTGGAGCTGTAAAATTGGAAGTCCG CCGTGAAAAATCGGTGTATGGGTATGGGGATGGGCATGGCAAGTTGTCGAGCTGGAAGTTGTGAC TGCGGATGAGCAGCATTAACGAAAATATAAACAAACATCTAGACTGGCAGCTAAAAGCAGCCAGC ACCTTATAAACTTTAAATGGAAAACAAGCAGAGGCTGGCAGGTTGGCACTGGAAAAATGGGTAGG ACAGCTTTTTACAAACTTTTTGGTAATACATCAGATAACATTTGC Found at i:14351687 original size:7 final size:7 Alignment explanation
Indices: 14351675--14351688 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 14351665 GCCAAAACAG 14351675 CACCAGC 1 CACCAGC 14351682 CACCAGC 1 CACCAGC 14351689 AACAACTAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.57, G:0.14, T:0.00 Consensus pattern (7 bp): CACCAGC Left flanking sequence: Indices 14351175 -- 14351674 CTTATTTCGGCTATCACTTAGATTTTAATACTTCATATTTTTATTATTTAATTCAATCAATCGAT ATACGTTTAATTAAATTGCTTAAATGGTTAGCATTAACCATTTCCAATTTGAAATATATTTAAGA TATCCTTGTTTTAAAAATCGTACAAACATCAATAGATTATTTTAAATTCAAATCAAACTAAAAAA GGAATTTCCTTAAAGCATGATCTTCGACTTGATTTTCCTCCCGGTGCTGGGAAAACTGCGATTCA GGGAGCTGTGAAAGGGCGTGACATGTGGTAAGTGCAGCAGGAGAAGCAGCTCCAGAAGTACTGAA AAGGAATCCAAAGCAAAAGGACAAGAGCAGTTCGGTTTCAGGCAGCCATCATAAAATGATGCGCC CACAAAATGCACATCCACATCCTGGCTAGGTGTAAATCACGTAGCACTCTGACGCCTTTTACAGT GCCAGTTGTTTTACCCACAATAAAATTGAAAAGCAGCCAAAACAG Right flanking sequence: Indices 14351689 -- 14352188 AACAACTAAAAACAACAACATTAACAACGACAACAACAAACAGAACAACAACAACATCGAAAACG ACAGTAGAACGCAAAAGTTTTAAAAGTAAAATGACAAGAGCACGTGCGACCTGTTCGGCGGTAGT CGAAATTGAAGGAGTTCGTTTACGTCGTATACCTTGACTACACTGTGAGAAAATTGGGAAATAGC ATTAAATTTCTCTAGAATTCATATCATATATGAATCATATAAAAATCATATTTAGTTGGCTTGTA AGAGCAGTACTCCTTGACAGGTATATAGAATTTTCATGACTATTTACATGATTCGCCATAATTTT GTTTTAACGTGTATGCTTCCCTTTAATGCCCGCCCGTTCTGCCCCCTTTTTCCGACTCTGGCTGA GTTATGGTTAGACATCGATCTCCTGGGAAGCCCAGTTGCAGAGCTGACTTAGCCGGGCTAAAGCT TCGTTCCGAAAAAGTTTTTGCATTTCTCGTGCGGCTCATTACAAC Found at i:14352385 original size:8 final size:8 Alignment explanation
Indices: 14352368--14352386 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 14352358 TAAGTGTCAT * 14352368 AGAGCTGA 1 AGAGCCGA 14352376 AGAGCCGA 1 AGAGCCGA 14352384 AGA 1 AGA 14352387 ACAGTGGTTT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.42, C:0.16, G:0.37, T:0.05 Consensus pattern (8 bp): AGAGCCGA Left flanking sequence: Indices 14351868 -- 14352367 AAAATTGGGAAATAGCATTAAATTTCTCTAGAATTCATATCATATATGAATCATATAAAAATCAT ATTTAGTTGGCTTGTAAGAGCAGTACTCCTTGACAGGTATATAGAATTTTCATGACTATTTACAT GATTCGCCATAATTTTGTTTTAACGTGTATGCTTCCCTTTAATGCCCGCCCGTTCTGCCCCCTTT TTCCGACTCTGGCTGAGTTATGGTTAGACATCGATCTCCTGGGAAGCCCAGTTGCAGAGCTGACT TAGCCGGGCTAAAGCTTCGTTCCGAAAAAGTTTTTGCATTTCTCGTGCGGCTCATTACAACTCCG TCAGAGCAGTAAAAAACACTCATATCAGAGCAGAGACTGCACTTCCTCTAGACTTTCCTCCAACT GGAAGTTTCGTTTCACCCACACAAAAGCAGCACACATACCATTACATCACTCTCTATCCTTGACA CCGGTCCACGCGCCGAGTATTTTGTTTATTAAAATTAAGTGTCAT Right flanking sequence: Indices 14352387 -- 14352886 ACAGTGGTTTTGGCTGCTATTTATTTATTTCCATAGTTAAAACTCTTAGTATAGTAGTTAGCCCT CGGTCTATTACAATCTTTAAATGAGTTTTAAAGAGAACCGTTTACATTAGTCCAATAAACGTTTC TATTACTACCTTTGCCTGTTTGATGCTATGTGCATATACTCAACATTCAAATTAATGTTTTCCAG AGGTCTATTGATTTACCAATTTAAGTACTAGACTAGACTGGAATGGAAATGACAATTTGTTATGC CTTTGTTGTTTGTTTACCCGAATGTCCTTGATGTTTCCCTAATCCCAATGACACTTTGCGTCCAG TGAGCAGCGTCCTGAAATGGTGCATCATCAGCTAAGACCACCAGGTGGTCCCAGGACCTTGGACT CCTGCCGCCCAGCCTTTTGCCATATTATTATTACTGCTGTTGCTGCTGCCTGTTGTTGTTTGTCG CCAGTTGCTATTAATGCCGCACAGCAACATCAGCCACAGCAGCAA Found at i:14352884 original size:9 final size:9 Alignment explanation
Indices: 14352863--14352892 Score: 39 Period size: 9 Copynumber: 3.3 Consensus size: 9 14352853 TAATGCCGCA * 14352863 CAGCAACAT 1 CAGCAACAC * * 14352872 CAGCCACAG 1 CAGCAACAC 14352881 CAGCAACAC 1 CAGCAACAC 14352890 CAG 1 CAG 14352893 TAGCCCCTTC Statistics Matches: 17, Mismatches: 4, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 9 17 1.00 ACGTcount: A:0.40, C:0.40, G:0.17, T:0.03 Consensus pattern (9 bp): CAGCAACAC Left flanking sequence: Indices 14352363 -- 14352862 GTCATAGAGCTGAAGAGCCGAAGAACAGTGGTTTTGGCTGCTATTTATTTATTTCCATAGTTAAA ACTCTTAGTATAGTAGTTAGCCCTCGGTCTATTACAATCTTTAAATGAGTTTTAAAGAGAACCGT TTACATTAGTCCAATAAACGTTTCTATTACTACCTTTGCCTGTTTGATGCTATGTGCATATACTC AACATTCAAATTAATGTTTTCCAGAGGTCTATTGATTTACCAATTTAAGTACTAGACTAGACTGG AATGGAAATGACAATTTGTTATGCCTTTGTTGTTTGTTTACCCGAATGTCCTTGATGTTTCCCTA ATCCCAATGACACTTTGCGTCCAGTGAGCAGCGTCCTGAAATGGTGCATCATCAGCTAAGACCAC CAGGTGGTCCCAGGACCTTGGACTCCTGCCGCCCAGCCTTTTGCCATATTATTATTACTGCTGTT GCTGCTGCCTGTTGTTGTTTGTCGCCAGTTGCTATTAATGCCGCA Right flanking sequence: Indices 14352893 -- 14353392 TAGCCCCTTCTGCAACCTGATGCACACTTTTTACGAGCTGCACACGCACACGTGCCGGAAAGTTT CCAAGTCCTGAGGTCCTGGGGACAAGGACACTCTGTCCAGTGGCCAGTGTCCGGCAGATACGTGC CTTTTTGCTTTGCCATTAGCCTGGTAGAACTGCGCCACCGTGGCCACATTAAGTGATATTTGTTT TACATGAAAATCAACTCCTGTCCGCTGTCCCAAACGGAGGACTCGAATTCCTCGTGGCTGCTGTT TAATTTAAATTTCAATTGAACAATTGTAGAATTGCAGAATTGCGGAGTTGCGGAATTGATTTGCT AATTGCATTGCCGTCGCGTGGTTAGTTGAGCTCATCATGGTTACTTAGGGGCAATTTTAATCAAT CATCAATCGGTGAGTGCATTTTGAGGCGTTGAGCCTGCGTTAAATCCAGCAAATCCATAACTAAA CATCACATCCATCGGATATGCAGCCTTAATGAGCACCAGATACAT Found at i:14353195 original size:8 final size:8 Alignment explanation
Indices: 14353166--14353210 Score: 48 Period size: 8 Copynumber: 5.6 Consensus size: 8 14353156 TTTAAATTTC * * 14353166 AATTGAAC 1 AATTGCAG * 14353174 AATTGTAG 1 AATTGCAG 14353182 AATTGCAG 1 AATTGCAG * 14353190 AATTGCGG 1 AATTGCAG * * 14353198 AGTTGCGG 1 AATTGCAG 14353206 AATTG 1 AATTG 14353211 ATTTGCTAAT Statistics Matches: 31, Mismatches: 6, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 8 31 1.00 ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29 Consensus pattern (8 bp): AATTGCAG Left flanking sequence: Indices 14352666 -- 14353165 GAATGTCCTTGATGTTTCCCTAATCCCAATGACACTTTGCGTCCAGTGAGCAGCGTCCTGAAATG GTGCATCATCAGCTAAGACCACCAGGTGGTCCCAGGACCTTGGACTCCTGCCGCCCAGCCTTTTG CCATATTATTATTACTGCTGTTGCTGCTGCCTGTTGTTGTTTGTCGCCAGTTGCTATTAATGCCG CACAGCAACATCAGCCACAGCAGCAACACCAGTAGCCCCTTCTGCAACCTGATGCACACTTTTTA CGAGCTGCACACGCACACGTGCCGGAAAGTTTCCAAGTCCTGAGGTCCTGGGGACAAGGACACTC TGTCCAGTGGCCAGTGTCCGGCAGATACGTGCCTTTTTGCTTTGCCATTAGCCTGGTAGAACTGC GCCACCGTGGCCACATTAAGTGATATTTGTTTTACATGAAAATCAACTCCTGTCCGCTGTCCCAA ACGGAGGACTCGAATTCCTCGTGGCTGCTGTTTAATTTAAATTTC Right flanking sequence: Indices 14353211 -- 14353710 ATTTGCTAATTGCATTGCCGTCGCGTGGTTAGTTGAGCTCATCATGGTTACTTAGGGGCAATTTT AATCAATCATCAATCGGTGAGTGCATTTTGAGGCGTTGAGCCTGCGTTAAATCCAGCAAATCCAT AACTAAACATCACATCCATCGGATATGCAGCCTTAATGAGCACCAGATACATTAACCGCATCAAC AGCTTGTTATATGCACAAATGTGTCAAGCATTACAGCAGCAGTAGCAGAAGCAGGCATCTGCATC TGCTGTCAGTGGTGGCATCTCGTGGATATATATCTCGAGGATATATATCTCGGGGATATATATCT TTTTCGGGTGCACACACAAATGTACATCGCCTGCAGCCGCAGAAAAATATATAACTTCGCCTAAC CCACATTACAGTGAAAGTTTTCGACTGCGCCAAATTCATGCCACTGAATGCTAATGCACTAATTA GTTCACGCTCTCAACTTGCCTGTCTGACTGCTCAGACTTTGCATT Found at i:14353289 original size:7 final size:7 Alignment explanation
Indices: 14353277--14353290 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 14353267 GGCAATTTTA 14353277 ATCAATC 1 ATCAATC 14353284 ATCAATC 1 ATCAATC 14353291 GGTGAGTGCA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.29, G:0.00, T:0.29 Consensus pattern (7 bp): ATCAATC Left flanking sequence: Indices 14352777 -- 14353276 CCTGCCGCCCAGCCTTTTGCCATATTATTATTACTGCTGTTGCTGCTGCCTGTTGTTGTTTGTCG CCAGTTGCTATTAATGCCGCACAGCAACATCAGCCACAGCAGCAACACCAGTAGCCCCTTCTGCA ACCTGATGCACACTTTTTACGAGCTGCACACGCACACGTGCCGGAAAGTTTCCAAGTCCTGAGGT CCTGGGGACAAGGACACTCTGTCCAGTGGCCAGTGTCCGGCAGATACGTGCCTTTTTGCTTTGCC ATTAGCCTGGTAGAACTGCGCCACCGTGGCCACATTAAGTGATATTTGTTTTACATGAAAATCAA CTCCTGTCCGCTGTCCCAAACGGAGGACTCGAATTCCTCGTGGCTGCTGTTTAATTTAAATTTCA ATTGAACAATTGTAGAATTGCAGAATTGCGGAGTTGCGGAATTGATTTGCTAATTGCATTGCCGT CGCGTGGTTAGTTGAGCTCATCATGGTTACTTAGGGGCAATTTTA Right flanking sequence: Indices 14353291 -- 14353790 GGTGAGTGCATTTTGAGGCGTTGAGCCTGCGTTAAATCCAGCAAATCCATAACTAAACATCACAT CCATCGGATATGCAGCCTTAATGAGCACCAGATACATTAACCGCATCAACAGCTTGTTATATGCA CAAATGTGTCAAGCATTACAGCAGCAGTAGCAGAAGCAGGCATCTGCATCTGCTGTCAGTGGTGG CATCTCGTGGATATATATCTCGAGGATATATATCTCGGGGATATATATCTTTTTCGGGTGCACAC ACAAATGTACATCGCCTGCAGCCGCAGAAAAATATATAACTTCGCCTAACCCACATTACAGTGAA AGTTTTCGACTGCGCCAAATTCATGCCACTGAATGCTAATGCACTAATTAGTTCACGCTCTCAAC TTGCCTGTCTGACTGCTCAGACTTTGCATTTACCATTTAGCAGACACATTGAGACAGCACCGGCA TTCGGGCTGCAAATGATTAAAAATTCGCAGACGTCCAGAATGCAA Found at i:14354880 original size:10 final size:9 Alignment explanation
Indices: 14354862--14354888 Score: 45 Period size: 10 Copynumber: 2.9 Consensus size: 9 14354852 GCGTTGCACG 14354862 TGGGGCAGT 1 TGGGGCAGT 14354871 TGGCGGCAGT 1 TGG-GGCAGT 14354881 TGGGGCAG 1 TGGGGCAG 14354889 CTGAGTGGTG Statistics Matches: 17, Mismatches: 0, Indels: 2 0.89 0.00 0.11 Matches are distributed among these distances: 9 8 0.47 10 9 0.53 ACGTcount: A:0.11, C:0.15, G:0.56, T:0.19 Consensus pattern (9 bp): TGGGGCAGT Left flanking sequence: Indices 14354362 -- 14354861 TTGAAATGTTTTGCTTTATTTTATAGAGAACACCCTTGTCCATTTAAAATATACCCAACCAAAAA TTGGTATCTAATTTCGCTTTACTTTTTTCTCTTTTATTACCAATTTTTGGTCGAACAGAGAACAA GCCGAAAAATTGTCAAATACCAAATCAATTTTGGTTTTACAACTAACAAAAATTGCAGCCAATAT AAAAATCTAATTGAAACTAGCGCAAAAAACTGTTAACACCACGCTGCACATTTAGATATATCTAT ATATACGTATATGCATGTTCGGCTTAGAAAAAGCAATTGGGTGTTGGTTGACCGCCAATAAATTG GGCCATAAACTTTTTAGAGCCCAATCGACTGATGTAAAATATTCTTAGTTATTTTTTAAATGCTC GCCTCATGAGGCTTGAAGTTCATTTGTCTGGCGTTGTTTTTCGTACATTTTCCCGAACGTAAAGC GCTACCCATAAAAGCCAAAGGCATTTAAAGTGGTGGCGTTGCACG Right flanking sequence: Indices 14354889 -- 14355388 CTGAGTGGTGGCAACCTGGCTAGCCGCAGCAAGTTGTAAAGATGTCCAAAGGCCACAGCACAAAA GTTTATTACAGTTTGGCCGGAAGATGGCGAGGGTTAAGGTATTGAAAGTCCCTTCGCACCTCACA CCCCATTGCCATGGCGGTCACTTTGGCCCCCTTTTCTTGCACTTGACTTTACAGTCACTACTTTA AGGCCTACGCATGAGGTAAAATAAGGTAAATTCAAATAGAAAGGGGCTAAAAGAGCTTGGTAACA TCGCTCAATAGTAGGCTAAAGATTTTATCTTATAATTTTGTATCAAAGGTATAGCTTTAAATAGG GAACATTCAAAAATGCAGTTCCGAAAAGTGGAAAAGAATTCACTTAATTAGAAAAAACAAATGAG TTCTCAATTGCACATTTAAATTTATTGCAGTTGTGTAATGTTATAAAATTATTGTATTTTACCCA CACACTTAAAAAGTGTATAAAAAGATTTGAGTAATTTTAAATTTA Found at i:14355449 original size:7 final size:7 Alignment explanation
Indices: 14355437--14355452 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 14355427 AGGTGCTTTA 14355437 TTTCTAT 1 TTTCTAT 14355444 TTTCTAT 1 TTTCTAT 14355451 TT 1 TT 14355453 CATACTTAAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.12, C:0.12, G:0.00, T:0.75 Consensus pattern (7 bp): TTTCTAT Left flanking sequence: Indices 14354937 -- 14355436 AAGGCCACAGCACAAAAGTTTATTACAGTTTGGCCGGAAGATGGCGAGGGTTAAGGTATTGAAAG TCCCTTCGCACCTCACACCCCATTGCCATGGCGGTCACTTTGGCCCCCTTTTCTTGCACTTGACT TTACAGTCACTACTTTAAGGCCTACGCATGAGGTAAAATAAGGTAAATTCAAATAGAAAGGGGCT AAAAGAGCTTGGTAACATCGCTCAATAGTAGGCTAAAGATTTTATCTTATAATTTTGTATCAAAG GTATAGCTTTAAATAGGGAACATTCAAAAATGCAGTTCCGAAAAGTGGAAAAGAATTCACTTAAT TAGAAAAAACAAATGAGTTCTCAATTGCACATTTAAATTTATTGCAGTTGTGTAATGTTATAAAA TTATTGTATTTTACCCACACACTTAAAAAGTGTATAAAAAGATTTGAGTAATTTTAAATTTATAT TCTTGACTTAAGGGTCATATTAATTTAGTGTATTTAGGTGCTTTA Right flanking sequence: Indices 14355453 -- 14355952 CATACTTAAAAATTGTATTTTTATGCATTTATTTACCTATTTGCAATATATTTCGGCAACAATTT TGCCTTGATTAGCTGTCTAATTTAATAATTCATAATATTTTCTATTTTACTTTCTGAATATCTAA ACTTTCTTTAACTCAATCAAAAATCTAGCTAATTGCTAGCAATACTAGAATTCATTCTAACAATT GCACTTTACATTTCCCCAGTGTTGTTCAGCCAATGTTCCACCTTCGTCAGGTGTCATAATTAATT TCCACGCCAGTTTGTTTTCATTGCCGTTGTTATCGCAGTAATTGTCACCGTTGTTGATACTGTTG CAACAACCAGTTTGCCTCCACATTTGTTGACATCTGCGGATTTGGGTCCCTGATTTATTGAAAAG GGCCAGCCAGCACTGAGGTCTCGGCCTGTTCTATATGCAAGTTGGGTTCCGCGCCACACACACAC ATTCACACAGCCACACACCCACACAACTCTCTCTCTCTCTATAAA Found at