TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_3R assembled 2004-3-5 md5checksum:6b279651b3b268f11e0dd1d87ded0ccc Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 27905053 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28 Found at i: i:22495909 original size:8 final size:8 Alignment explanation
Indices: 22495896--22495911 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 22495886 CTAATTGATT 22495896 CGTGGCCA 1 CGTGGCCA 22495904 CGTGGCCA 1 CGTGGCCA 22495912 ACCAATTTAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.12, C:0.38, G:0.38, T:0.12 Consensus pattern (8 bp): CGTGGCCA Left flanking sequence: Indices 22495396 -- 22495895 ATTGAAAACTATTGTTGTCCTACAAATACTTTGGTAATCAATAAGTTTGAGTTTTGTAGTTATTA GAAAGTCGTGAAATGTTTAAAAACATTATAATTCTTACGAAGAATATGCTTTTACTTTGAGTGTA GCTCCTGCTCCAAAGATATCCAATAATATCGACTGGGGGTCAGCTGTCTTGGCCCGTCTAACTGT CAGTTGGCCTCCCGAAAGCTCCCCGGTGTCCTTATGGCTGCGAGTCATTATGGCTGAGTGGCAGA CAATGCTCGGGGCATTCACATTCCATGGAGTTCATTAGACACGGGCAGCTGCCAAAGCGGCATCG GCATGGGCATCGGCAGCCTGCCCCCCAACCCACACTTTTACAAACTGATTTCCTGTCCTCATTAC GGCCGTTTGTCTGCTCCGGTCTGATGAGGATTTGAAGTCAGGACGTGACTGTCAATAATTTTCAA TGCTCCACGACTTATCGCAGTGGACTTGCCATTTTCTAATTGATT Right flanking sequence: Indices 22495912 -- 22496411 ACCAATTTAAATGCATGCTTGATTGGTAAAACACACGTAGACAGCCTGCGAACCAGTCATGACTG GCAGTAAACGTCCACAATGTTTTTAAAGTTGACCGCACAAAGCAAACATTTTCCCCTAGACCAAA AACACAAACACACACTCACACATACACATTCTCACACCATGGCAACGGAACCATGGAACACTATC AGCAACATAAGCCAAACAATAAAACGGCAAACACCCAGCATTTACCCACTCTAGGACGAGGACGA GGACTACGAAAAGGATAAGGCCATAAGTCGTTATGCTACCGAGGCGTTCGTTCAGAAACTGTAAG CACTGGCTTTATTCGGCATGGGCCTTTGCGTGGGCATGAGTCCTGGTGTCCTGGCGTCCCTTGGT TTCTTCGTCCTTTCATTCGGGAGCGAAAAAACAAAAGGCCGAAATAAGAGGCAGACAAGGTCCGC CGGCATGTTCGAGGCATAAAGTAATTTTATAGAACAAATCACAGG Found at i:22496289 original size:8 final size:8 Alignment explanation
Indices: 22496276--22496295 Score: 33 Period size: 8 Copynumber: 2.5 Consensus size: 8 22496266 GTGGGCATGA * 22496276 GTCCTGGT 1 GTCCTGGC 22496284 GTCCTGGC 1 GTCCTGGC 22496292 GTCC 1 GTCC 22496296 CTTGGTTTCT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.00, C:0.35, G:0.35, T:0.30 Consensus pattern (8 bp): GTCCTGGC Left flanking sequence: Indices 22495776 -- 22496275 TCCTCATTACGGCCGTTTGTCTGCTCCGGTCTGATGAGGATTTGAAGTCAGGACGTGACTGTCAA TAATTTTCAATGCTCCACGACTTATCGCAGTGGACTTGCCATTTTCTAATTGATTCGTGGCCACG TGGCCAACCAATTTAAATGCATGCTTGATTGGTAAAACACACGTAGACAGCCTGCGAACCAGTCA TGACTGGCAGTAAACGTCCACAATGTTTTTAAAGTTGACCGCACAAAGCAAACATTTTCCCCTAG ACCAAAAACACAAACACACACTCACACATACACATTCTCACACCATGGCAACGGAACCATGGAAC ACTATCAGCAACATAAGCCAAACAATAAAACGGCAAACACCCAGCATTTACCCACTCTAGGACGA GGACGAGGACTACGAAAAGGATAAGGCCATAAGTCGTTATGCTACCGAGGCGTTCGTTCAGAAAC TGTAAGCACTGGCTTTATTCGGCATGGGCCTTTGCGTGGGCATGA Right flanking sequence: Indices 22496296 -- 22496795 CTTGGTTTCTTCGTCCTTTCATTCGGGAGCGAAAAAACAAAAGGCCGAAATAAGAGGCAGACAAG GTCCGCCGGCATGTTCGAGGCATAAAGTAATTTTATAGAACAAATCACAGGCATTAGCGGATATA AATCCAGTTTATCCCTGCCAGTGTATGCGCGCGTGAAATTCAAATAACTCGGGAGGGCACGCAAC ATTGGAGGGAGCAAGAAAAATGGTCGATTGTGGCCTATTCTGGGGTCCTTGAGCTGTTTCTGGTC TTGTAATTCCATATCCCTTCCGACCAGAGGCAACATGCATGTAGGAACTTATCCACCGTGGAAAG AAGAGACTTTTGAAATGGCCCAACTCTCCCGGGAGACAAATTGCCTTGGCCTTGGTCACAAGGAA ACAGCCATCAAAGGCGATCCCAGCTGAGCACACTCCATTTTTTGCTAGTCAAACTTTAATGGCTT TAAGCGGGTGATATCAAATTGAATTGCCCTCCACACAGGACATCT Found at i:22496958 original size:7 final size:7 Alignment explanation
Indices: 22496946--22496959 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 22496936 CGATGTTGTC 22496946 GCCCACA 1 GCCCACA 22496953 GCCCACA 1 GCCCACA 22496960 TACACAAACA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.57, G:0.14, T:0.00 Consensus pattern (7 bp): GCCCACA Left flanking sequence: Indices 22496446 -- 22496945 GTGTATGCGCGCGTGAAATTCAAATAACTCGGGAGGGCACGCAACATTGGAGGGAGCAAGAAAAA TGGTCGATTGTGGCCTATTCTGGGGTCCTTGAGCTGTTTCTGGTCTTGTAATTCCATATCCCTTC CGACCAGAGGCAACATGCATGTAGGAACTTATCCACCGTGGAAAGAAGAGACTTTTGAAATGGCC CAACTCTCCCGGGAGACAAATTGCCTTGGCCTTGGTCACAAGGAAACAGCCATCAAAGGCGATCC CAGCTGAGCACACTCCATTTTTTGCTAGTCAAACTTTAATGGCTTTAAGCGGGTGATATCAAATT GAATTGCCCTCCACACAGGACATCTTTTATTTTATTCCTTAATTTTCACTCCCACATTTTAGTCA CATTTCTGAAATTAAATCACAGCCGAATGCCGCCATGAATGGAATCAAAATCAAAGGAAAAATAA AATGAAAATGAAAATGAAAAAGAAAATAGCCAACGCGATGTTGTC Right flanking sequence: Indices 22496960 -- 22497459 TACACAAACACTGGGCTGGACTGGCTTATACAAGCAGCCCCCTTATACACCATGACCGACAAAAG TAGCCAATGTAATGGCCAAAACAAAATATGAACGAAATTGCGGACCGGCCAGGGCCAGAGTCAGA ACCAGAACCAGAACCAGAAGCAGAATCACGACCAGAGCGCCACAGGAAGCCAACTTCCTGGTTGA AAATTTTATCTGGTTGGCCATGGCAGCGACTACGAAAACGAAAGAGCCCAGCTAGCAAGAAAGGC AGGAATAAAAAAACGCCAGAATCCGTTTATATGTATATGTATAAGAAAACGGCTTCAAGGACACC TCATGCTGCTGCTGGTGCTGTTGCTGGTGGCTGCACAACTACAGGCGCAACTACAGCAACCACTA CAACGACGTCTAAGGTCCTGCCCAGGCACGCCCACAGGGTTGCCCAGCACGTAAAGTACATACCA GGCCATAGCACACCACGCCACACTGTATAGCACGCCCCGCGCCCA Found at i:22497606 original size:10 final size:10 Alignment explanation
Indices: 22497585--22497608 Score: 34 Period size: 10 Copynumber: 2.4 Consensus size: 10 22497575 ATCTATATTA 22497585 AATTCAAAAC 1 AATTCAAAAC * * 22497595 AATTTAAGAC 1 AATTCAAAAC 22497605 AATT 1 AATT 22497609 GTAATTTCGC Statistics Matches: 12, Mismatches: 2, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 10 12 1.00 ACGTcount: A:0.54, C:0.12, G:0.04, T:0.29 Consensus pattern (10 bp): AATTCAAAAC Left flanking sequence: Indices 22497085 -- 22497584 TCAGAACCAGAACCAGAACCAGAAGCAGAATCACGACCAGAGCGCCACAGGAAGCCAACTTCCTG GTTGAAAATTTTATCTGGTTGGCCATGGCAGCGACTACGAAAACGAAAGAGCCCAGCTAGCAAGA AAGGCAGGAATAAAAAAACGCCAGAATCCGTTTATATGTATATGTATAAGAAAACGGCTTCAAGG ACACCTCATGCTGCTGCTGGTGCTGTTGCTGGTGGCTGCACAACTACAGGCGCAACTACAGCAAC CACTACAACGACGTCTAAGGTCCTGCCCAGGCACGCCCACAGGGTTGCCCAGCACGTAAAGTACA TACCAGGCCATAGCACACCACGCCACACTGTATAGCACGCCCCGCGCCCATTTACAAGGCCGTGG AGCGAACACATGTAGGCCATGAATCTCATAACGAGTGTTAGACATGCGCCACGAGCCTCGCACTG TGGGCCAAAAGCCCTACCACATGCAATAAAATTCGATCTATATTA Right flanking sequence: Indices 22497609 -- 22498108 GTAATTTCGCGTGTCTACTTTTTAAAGAATGTGCTTTTGTATTGTAACATCATATAAAATCATAA TGGTTTGAAAGCCTAAAGTTAAAGGTCAGTGAGCAAGGTTTTTCTTCACAGATATGTTTGACAAG ATCCAATAACCAAAATGTATGGCCAAAAACTGATCATATTAGCCCACAGTTCATTGTCTTGGTGT GGGTAGGCTTTGAGCCCAATAAGTGTTTGAGGATGGCCAACAGTTGCCGCTCCAGTAAGCGCGAC CTGGACCTGCCTCGTAAAGATGCAGACCATTAAAGAAATGAAAAGCAAACGCCGTCGACCGAAGC GGCGACTGTGACAGCGACGGCGGCGTTGGTAAACACATAAAAATGCTTAAATTACTTTTAAGGGG AATTATTTATTATTAATGTGTGGGCCATGAGAAACGAAACCAACGACAGGGAATACCGCAACCAT GCCAAACAGCAAAAACGAGGCTAAGCCAAATTAGAAGGGCTGACA Found at i:22497672 original size:10 final size:10 Alignment explanation
Indices: 22497653--22497672 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 22497643 TTTTGTATTG * 22497653 TAACATCATA 1 TAAAATCATA 22497663 TAAAATCATA 1 TAAAATCATA 22497673 ATGGTTTGAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30 Consensus pattern (10 bp): TAAAATCATA Left flanking sequence: Indices 22497153 -- 22497652 GAAAATTTTATCTGGTTGGCCATGGCAGCGACTACGAAAACGAAAGAGCCCAGCTAGCAAGAAAG GCAGGAATAAAAAAACGCCAGAATCCGTTTATATGTATATGTATAAGAAAACGGCTTCAAGGACA CCTCATGCTGCTGCTGGTGCTGTTGCTGGTGGCTGCACAACTACAGGCGCAACTACAGCAACCAC TACAACGACGTCTAAGGTCCTGCCCAGGCACGCCCACAGGGTTGCCCAGCACGTAAAGTACATAC CAGGCCATAGCACACCACGCCACACTGTATAGCACGCCCCGCGCCCATTTACAAGGCCGTGGAGC GAACACATGTAGGCCATGAATCTCATAACGAGTGTTAGACATGCGCCACGAGCCTCGCACTGTGG GCCAAAAGCCCTACCACATGCAATAAAATTCGATCTATATTAAATTCAAAACAATTTAAGACAAT TGTAATTTCGCGTGTCTACTTTTTAAAGAATGTGCTTTTGTATTG Right flanking sequence: Indices 22497673 -- 22498172 ATGGTTTGAAAGCCTAAAGTTAAAGGTCAGTGAGCAAGGTTTTTCTTCACAGATATGTTTGACAA GATCCAATAACCAAAATGTATGGCCAAAAACTGATCATATTAGCCCACAGTTCATTGTCTTGGTG TGGGTAGGCTTTGAGCCCAATAAGTGTTTGAGGATGGCCAACAGTTGCCGCTCCAGTAAGCGCGA CCTGGACCTGCCTCGTAAAGATGCAGACCATTAAAGAAATGAAAAGCAAACGCCGTCGACCGAAG CGGCGACTGTGACAGCGACGGCGGCGTTGGTAAACACATAAAAATGCTTAAATTACTTTTAAGGG GAATTATTTATTATTAATGTGTGGGCCATGAGAAACGAAACCAACGACAGGGAATACCGCAACCA TGCCAAACAGCAAAAACGAGGCTAAGCCAAATTAGAAGGGCTGACAATTTGAGTTTCAATCATTT TGCATTTGGCTAATGCGTATTTCTCGTTTAAAAATATCATGGGGC Found at i:22498835 original size:7 final size:7 Alignment explanation
Indices: 22498823--22498836 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 22498813 TTGAAGTTGG 22498823 CTAATCT 1 CTAATCT 22498830 CTAATCT 1 CTAATCT 22498837 ACACAGGCAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.29, G:0.00, T:0.43 Consensus pattern (7 bp): CTAATCT Left flanking sequence: Indices 22498323 -- 22498822 ATGGCAAGTGGAATTCCAGACTGCATTTGACATTTTGCTGGCCACACATTTTAGCGGAATATCCC GATTTGTTTATAACCAAGTCCGATTAAATTTCGAGCCCGGCACTATTTCTAGTCACCAAAAACAA TTAAATGAGGAGAATTATTTATTTATTTATTTTTATTTTCTGGTGTCACGACGTACGTGGGGAGA AGTGACATGCGCAGCTGTTGGACGATTTTCTGAAAATTGAAAACATTTCCGCCACCCCATAAGTG TTCTTGTTGTTGTTGATTTTTGTAGCCGCAACAAATGTTTGGAAACCGCAGGTGGACGTGGAAAA GTGTGGAGGCGGTGCCCACGCCCACCTGGACAATTAATGGGTGCCGAGGCCACGTGCTGTCCAAA ACAAGCGGTCCTGACCGCCATCAATTTGAGCCTGCGTCACAATTATGTTTGGTATTCGTAATTCG ACCAACGAATATCCTTCGACTACCGGCCGGGCCTTTTGAAGTTGG Right flanking sequence: Indices 22498837 -- 22499336 ACACAGGCATTAGCCCAGTGACACGAGCATGGGATCTGGGAACTGGAACGAGGAGCAGATGGAAT GACGAGATGACGCCATTGGCCCTGCAGCGTTTTTCGAGCCTGCTGATGATATTGACATTTATGCT TGACCCACAGTTTGACATTTTTTTTTTTCGCCCGTTCTCATTCCTGTTTTTCCGCACTTTTTGTT AGCTTCAGTTTGGCCAAAACAGAATGGAACAGAACGTTGGACCCAATTTTTTGTTGACACTCGGC CGCACCTGCTGTCTGCCTGTCTATTTGTTTGGCTAATGTCTGTGGCCAGGACACAAGCTGGGATG GGTACGTTCGACGAACATGTGATATCGTTGGCATAGCCCGGAATATCCTGGCCCGGGTGTAAATG CGCATTAGTCGAGGGTCAGATGGAACCTATATGGCGCAGAATATTTGCGGGCTGCTAATAAGGAG CTCGGCCGCCGGCGACAGCAAAACCCTCGTCAACAACCTTGGCCA Found at i:22498882 original size:7 final size:7 Alignment explanation
Indices: 22498866--22498882 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 22498856 GACACGAGCA * 22498866 TGGGATC 1 TGGGAAC 22498873 TGGGAAC 1 TGGGAAC 22498880 TGG 1 TGG 22498883 AACGAGGAGC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.18, C:0.12, G:0.47, T:0.24 Consensus pattern (7 bp): TGGGAAC Left flanking sequence: Indices 22498366 -- 22498865 ACACATTTTAGCGGAATATCCCGATTTGTTTATAACCAAGTCCGATTAAATTTCGAGCCCGGCAC TATTTCTAGTCACCAAAAACAATTAAATGAGGAGAATTATTTATTTATTTATTTTTATTTTCTGG TGTCACGACGTACGTGGGGAGAAGTGACATGCGCAGCTGTTGGACGATTTTCTGAAAATTGAAAA CATTTCCGCCACCCCATAAGTGTTCTTGTTGTTGTTGATTTTTGTAGCCGCAACAAATGTTTGGA AACCGCAGGTGGACGTGGAAAAGTGTGGAGGCGGTGCCCACGCCCACCTGGACAATTAATGGGTG CCGAGGCCACGTGCTGTCCAAAACAAGCGGTCCTGACCGCCATCAATTTGAGCCTGCGTCACAAT TATGTTTGGTATTCGTAATTCGACCAACGAATATCCTTCGACTACCGGCCGGGCCTTTTGAAGTT GGCTAATCTCTAATCTACACAGGCATTAGCCCAGTGACACGAGCA Right flanking sequence: Indices 22498883 -- 22499382 AACGAGGAGCAGATGGAATGACGAGATGACGCCATTGGCCCTGCAGCGTTTTTCGAGCCTGCTGA TGATATTGACATTTATGCTTGACCCACAGTTTGACATTTTTTTTTTTCGCCCGTTCTCATTCCTG TTTTTCCGCACTTTTTGTTAGCTTCAGTTTGGCCAAAACAGAATGGAACAGAACGTTGGACCCAA TTTTTTGTTGACACTCGGCCGCACCTGCTGTCTGCCTGTCTATTTGTTTGGCTAATGTCTGTGGC CAGGACACAAGCTGGGATGGGTACGTTCGACGAACATGTGATATCGTTGGCATAGCCCGGAATAT CCTGGCCCGGGTGTAAATGCGCATTAGTCGAGGGTCAGATGGAACCTATATGGCGCAGAATATTT GCGGGCTGCTAATAAGGAGCTCGGCCGCCGGCGACAGCAAAACCCTCGTCAACAACCTTGGCCAG GACTTCAGGACTTGTTGAAACAATGCGCGTCGCACAAAAGTCCTT Found at i:22499348 original size:8 final size:8 Alignment explanation
Indices: 22499335--22499350 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 22499325 CAACCTTGGC 22499335 CAGGACTT 1 CAGGACTT 22499343 CAGGACTT 1 CAGGACTT 22499351 GTTGAAACAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25 Consensus pattern (8 bp): CAGGACTT Left flanking sequence: Indices 22498835 -- 22499334 CTACACAGGCATTAGCCCAGTGACACGAGCATGGGATCTGGGAACTGGAACGAGGAGCAGATGGA ATGACGAGATGACGCCATTGGCCCTGCAGCGTTTTTCGAGCCTGCTGATGATATTGACATTTATG CTTGACCCACAGTTTGACATTTTTTTTTTTCGCCCGTTCTCATTCCTGTTTTTCCGCACTTTTTG TTAGCTTCAGTTTGGCCAAAACAGAATGGAACAGAACGTTGGACCCAATTTTTTGTTGACACTCG GCCGCACCTGCTGTCTGCCTGTCTATTTGTTTGGCTAATGTCTGTGGCCAGGACACAAGCTGGGA TGGGTACGTTCGACGAACATGTGATATCGTTGGCATAGCCCGGAATATCCTGGCCCGGGTGTAAA TGCGCATTAGTCGAGGGTCAGATGGAACCTATATGGCGCAGAATATTTGCGGGCTGCTAATAAGG AGCTCGGCCGCCGGCGACAGCAAAACCCTCGTCAACAACCTTGGC Right flanking sequence: Indices 22499351 -- 22499850 GTTGAAACAATGCGCGTCGCACAAAAGTCCTTGCACAATCAATGCCAGCCGGGCTTTGTTTGCTT ACCACTACCACAACCACTTTCACTCCCGATCCCAATCTGAATGCGAATTCCAATTCCTTCTGCTG GCCTGGGGCACCATTAAAAAATCAACTCTCGAATCGGTCTCACAAAGTGCCTTCATTATGCGAAT CCGAGGCAAGTCCTGCCTTTCCTTTTCCGTTTTTAGCCTGGAAGTTGGTCGTCTGTGCATTTCGG ACAAACGCTTAGGCAGGCCGAAAGCAAATTTTTGTACGCACAAAAGGCGTAACAATCAGGCTCTG GGCATCATAAAATCTATATGTAGAAGGGCCTTTGTTTGGACTGCATGATTTCTGGCGATTGTAAT CAATAATTTACGCATTTTCATTTTCGGCCAGCCCCAAGGAGGCATTAGTGTTTGGGTCGCAATTA CAAAGACACAAGTGGCAGCCATTCAGGCGTGCACTTATGTGTGTG Found at i:22501390 original size:8 final size:8 Alignment explanation
Indices: 22501377--22501397 Score: 42 Period size: 8 Copynumber: 2.6 Consensus size: 8 22501367 CCACTCGTAC 22501377 AAGGATCT 1 AAGGATCT 22501385 AAGGATCT 1 AAGGATCT 22501393 AAGGA 1 AAGGA 22501398 CCCCTTCGCC Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 13 1.00 ACGTcount: A:0.43, C:0.10, G:0.29, T:0.19 Consensus pattern (8 bp): AAGGATCT Left flanking sequence: Indices 22500877 -- 22501376 CACACGAACTCAGAAGCCACATCATGAGAATGAAAACATTGCCAGTAATTGAAGACACGACGAAA TTAATTAAGTAGCTGGTGTGGGAGATGAGAAAGTAATCCACTAACTAGCTCCGGGCTGCATTTGC TTTGTTTCTGAAGCCTTAGATATTGAACGCAGATAGAGATACATAAGCCAGTTTAGTTTTAAGCG GAGATAATTTGAAAATCTCTTTAGAGGCTTGCCAGCTTTAATTTACGTTTTACTTCCGGCTGTGG AAATCTACAAATTACTAACGGACTCTTTGCACTTCATCATTTTGTTTTTGGTCGCTCTCACTCAA TTTGTAGTAATCACATTTATTTGTCTCATTTCTGGTGTTCATATAAAACGAGAAGTTCGACCTAC TAGTTTTTTCACATTTTTCTCGCTTTTTCGTATTGTTTGTCATGCGTTTGAGCGCGTGCCTAGAT TTTAGCTAGTGTTTTATTGCCTACTTTGGGTCGTCCCACTCGTAC Right flanking sequence: Indices 22501398 -- 22501897 CCCCTTCGCCCGCCACACACACACTTTGAAGTGAGCACACACACAACTGCACTAAAACAAAATTA CACCCACTGTGGATGTGGGTGGGGATGAAAAACAAAACATTTGCCTTTCATTTGCGCCCCCTTTT GCATAATAAAAATGTGTAGTTTACTTCCATTTTTCCCGCCCCTTGCTCACACATTTGCCACTCCC ACCACCCCGAAAGTCCACCGACAACTTTGCTAGCCCTTTTTCCAGGCATTTGCCGTCGTTATTGT TTGTTTGTTCTTGTTTCCCCGCCCATCCGAACCCCCCATTTTTCGCAGTGTCTCTGTGGGTGCGG CCTGTAGGAGTATGTGTGACATTTCCGGCTCTGTTTAATTTTCCATTCAGTCTGCTCCACTCTCT CCGCCGAGTTATCCCTATTCTTTTTTTTCGGCATTTAATGCGAGTTCTTTTTCACTCGGGCTTAC AATAATAAACTTTTTAGTGCCTAGACATGTTTTTATTTAGTTGAA Found at i:22502379 original size:7 final size:7 Alignment explanation
Indices: 22502367--22502380 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 22502357 TGCGCCATCA 22502367 CTTTGGT 1 CTTTGGT 22502374 CTTTGGT 1 CTTTGGT 22502381 ATCCGGCTGC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.14, G:0.29, T:0.57 Consensus pattern (7 bp): CTTTGGT Left flanking sequence: Indices 22501867 -- 22502366 TAGTGCCTAGACATGTTTTTATTTAGTTGAAGAGGGCTGTCAGACAGCGGAGACACTGGGTTTTT TAATTAATTTTTGCCTACTGGCGTCGAATCGTTTTCATGTGCACCATGCGGCTTGCTAACGCCTG TCTGTCGCAGCAATACAATAAAACACAAGGCTGACTTCAAATGATGCTGGCTTTTTTGGCAGTGA TTAAATTGTTATGGCTGAGCAGTAACCAAGGAGCCTATTGTAGATCCCGAATCTGGTGTTCCTTG TGGCCTCGGCGGAATCACTGATTTTCCAGAAGCCAAAAAAAGTGTGGGGACTCGAGCTATATGAC CCCAATGCTTAATGACTACGGATTGAACACGCCGGCTGAACTTCTGTGATTTCAATGGCCTGGGA CAGGTTCAATTTATGCGTTTTGCTGTCATTTGTTTTGCTTGACCACACGGCTGTGCGCTTATGGG CTAAGCTCTTTCGGATCCCGGGGTCCAGAAATTTATGCGCCATCA Right flanking sequence: Indices 22502381 -- 22502880 ATCCGGCTGCCTTCCGCTCAAATCCCTTAAAACCTCAGGAAAAAGGCAACGGCCAGGATCATTCA TTTCATTTATTTTGCAGGAGCTGCCGGCAGCGTTTCACTTTGCTCCTGCTTTAAACTGCTCTCGA CCTTTGTCAAAAGTTTTGCGGCCTGAAAACTTTGTGGCAAAAATCAAACTGTGGATAATGATGAA TGCGGCCAGCAGGTTGTGGGCTCTTGGCATGTGGGCCTGAATAATTATCGCATCGCTGAGTTCGG TATTCGAGGTGGAGTCATGACTTTTGTCTCTGAATGGGCAAACTTGGTCAATTTACATGTCGATT TTAATGGCGAATTTTTGTCAGCTCTTCCGCATTGCGTGTGGCCATCCAATTTATGGATTTTCCTC AAGTCCCTTTCGGGTCGACGCTCTGATTAGGGTTTGCCTGACCGAGATTTATGCTGCATTTGTTT CCTGCTGTGAGCGTTCCTATTAAGGCTCATTAAGGATCAAGTTCA Found at i:22502457 original size:9 final size:9 Alignment explanation
Indices: 22502439--22502457 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 22502429 ACGGCCAGGA 22502439 TCATTCATT 1 TCATTCATT * 22502448 TCATTTATT 1 TCATTCATT 22502457 T 1 T 22502458 TGCAGGAGCT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.21, C:0.16, G:0.00, T:0.63 Consensus pattern (9 bp): TCATTCATT Left flanking sequence: Indices 22501939 -- 22502438 TTTTTGCCTACTGGCGTCGAATCGTTTTCATGTGCACCATGCGGCTTGCTAACGCCTGTCTGTCG CAGCAATACAATAAAACACAAGGCTGACTTCAAATGATGCTGGCTTTTTTGGCAGTGATTAAATT GTTATGGCTGAGCAGTAACCAAGGAGCCTATTGTAGATCCCGAATCTGGTGTTCCTTGTGGCCTC GGCGGAATCACTGATTTTCCAGAAGCCAAAAAAAGTGTGGGGACTCGAGCTATATGACCCCAATG CTTAATGACTACGGATTGAACACGCCGGCTGAACTTCTGTGATTTCAATGGCCTGGGACAGGTTC AATTTATGCGTTTTGCTGTCATTTGTTTTGCTTGACCACACGGCTGTGCGCTTATGGGCTAAGCT CTTTCGGATCCCGGGGTCCAGAAATTTATGCGCCATCACTTTGGTCTTTGGTATCCGGCTGCCTT CCGCTCAAATCCCTTAAAACCTCAGGAAAAAGGCAACGGCCAGGA Right flanking sequence: Indices 22502458 -- 22502957 TGCAGGAGCTGCCGGCAGCGTTTCACTTTGCTCCTGCTTTAAACTGCTCTCGACCTTTGTCAAAA GTTTTGCGGCCTGAAAACTTTGTGGCAAAAATCAAACTGTGGATAATGATGAATGCGGCCAGCAG GTTGTGGGCTCTTGGCATGTGGGCCTGAATAATTATCGCATCGCTGAGTTCGGTATTCGAGGTGG AGTCATGACTTTTGTCTCTGAATGGGCAAACTTGGTCAATTTACATGTCGATTTTAATGGCGAAT TTTTGTCAGCTCTTCCGCATTGCGTGTGGCCATCCAATTTATGGATTTTCCTCAAGTCCCTTTCG GGTCGACGCTCTGATTAGGGTTTGCCTGACCGAGATTTATGCTGCATTTGTTTCCTGCTGTGAGC GTTCCTATTAAGGCTCATTAAGGATCAAGTTCATGAAGCGGAGTGGTGAGTGGTGAGCCAATAAA ATATATTTGTCATCGGTTCTGCTTTAATGGAAAAGAAGTGGTGGC Found at i:22502869 original size:10 final size:10 Alignment explanation
Indices: 22502854--22502874 Score: 35 Period size: 10 Copynumber: 2.1 Consensus size: 10 22502844 GAGCGTTCCT * 22502854 ATTAAGGCTC 1 ATTAAGGATC 22502864 ATTAAGGATC 1 ATTAAGGATC 22502874 A 1 A 22502875 AGTTCATGAA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29 Consensus pattern (10 bp): ATTAAGGATC Left flanking sequence: Indices 22502354 -- 22502853 TTATGCGCCATCACTTTGGTCTTTGGTATCCGGCTGCCTTCCGCTCAAATCCCTTAAAACCTCAG GAAAAAGGCAACGGCCAGGATCATTCATTTCATTTATTTTGCAGGAGCTGCCGGCAGCGTTTCAC TTTGCTCCTGCTTTAAACTGCTCTCGACCTTTGTCAAAAGTTTTGCGGCCTGAAAACTTTGTGGC AAAAATCAAACTGTGGATAATGATGAATGCGGCCAGCAGGTTGTGGGCTCTTGGCATGTGGGCCT GAATAATTATCGCATCGCTGAGTTCGGTATTCGAGGTGGAGTCATGACTTTTGTCTCTGAATGGG CAAACTTGGTCAATTTACATGTCGATTTTAATGGCGAATTTTTGTCAGCTCTTCCGCATTGCGTG TGGCCATCCAATTTATGGATTTTCCTCAAGTCCCTTTCGGGTCGACGCTCTGATTAGGGTTTGCC TGACCGAGATTTATGCTGCATTTGTTTCCTGCTGTGAGCGTTCCT Right flanking sequence: Indices 22502875 -- 22503374 AGTTCATGAAGCGGAGTGGTGAGTGGTGAGCCAATAAAATATATTTGTCATCGGTTCTGCTTTAA TGGAAAAGAAGTGGTGGCTGACAGTACAGCGAACGCAGCGATGCTGGTCGCTCATAAACTCATAA ATTTGGTGAAAAATGGCAAATCGATTCCGCTCTTTTTTGCGGTCATTGTTATTACAAAACTGTCA GAGCCCCGGACCAAGTGGAAGGCAAATGCAGGCTCTATATCTCCAGAGTTCACCTCCCCCCATCT TCAAGTCCCCGGGCAGTTGGCAAATCCCTTTTGATAAAGTGCCTTTCGTCCTTCCAGGCAGACAG GCTCCTTCGAGCTTTTGGCTTCGAGTGTCGCATTATGGCCATTCTCGAAAGGCAACGCCTCGATG GCTTCGCAATTTCCAGCTCAGTTCGCTTTAGTGGCGGATTTGGCAATAAGAGGCGGCCAGATTTA TACAACTGCTTTCATGCATAATTATTTGCTGACATCTTAATAGTT Found at i:22502900 original size:7 final size:7 Alignment explanation
Indices: 22502888--22502904 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 22502878 TCATGAAGCG 22502888 GAGTGGT 1 GAGTGGT 22502895 GAGTGGT 1 GAGTGGT 22502902 GAG 1 GAG 22502905 CCAATAAAAT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.18, C:0.00, G:0.59, T:0.24 Consensus pattern (7 bp): GAGTGGT Left flanking sequence: Indices 22502388 -- 22502887 TGCCTTCCGCTCAAATCCCTTAAAACCTCAGGAAAAAGGCAACGGCCAGGATCATTCATTTCATT TATTTTGCAGGAGCTGCCGGCAGCGTTTCACTTTGCTCCTGCTTTAAACTGCTCTCGACCTTTGT CAAAAGTTTTGCGGCCTGAAAACTTTGTGGCAAAAATCAAACTGTGGATAATGATGAATGCGGCC AGCAGGTTGTGGGCTCTTGGCATGTGGGCCTGAATAATTATCGCATCGCTGAGTTCGGTATTCGA GGTGGAGTCATGACTTTTGTCTCTGAATGGGCAAACTTGGTCAATTTACATGTCGATTTTAATGG CGAATTTTTGTCAGCTCTTCCGCATTGCGTGTGGCCATCCAATTTATGGATTTTCCTCAAGTCCC TTTCGGGTCGACGCTCTGATTAGGGTTTGCCTGACCGAGATTTATGCTGCATTTGTTTCCTGCTG TGAGCGTTCCTATTAAGGCTCATTAAGGATCAAGTTCATGAAGCG Right flanking sequence: Indices 22502905 -- 22503404 CCAATAAAATATATTTGTCATCGGTTCTGCTTTAATGGAAAAGAAGTGGTGGCTGACAGTACAGC GAACGCAGCGATGCTGGTCGCTCATAAACTCATAAATTTGGTGAAAAATGGCAAATCGATTCCGC TCTTTTTTGCGGTCATTGTTATTACAAAACTGTCAGAGCCCCGGACCAAGTGGAAGGCAAATGCA GGCTCTATATCTCCAGAGTTCACCTCCCCCCATCTTCAAGTCCCCGGGCAGTTGGCAAATCCCTT TTGATAAAGTGCCTTTCGTCCTTCCAGGCAGACAGGCTCCTTCGAGCTTTTGGCTTCGAGTGTCG CATTATGGCCATTCTCGAAAGGCAACGCCTCGATGGCTTCGCAATTTCCAGCTCAGTTCGCTTTA GTGGCGGATTTGGCAATAAGAGGCGGCCAGATTTATACAACTGCTTTCATGCATAATTATTTGCT GACATCTTAATAGTTTTTCCAAGTCTCTTTAGCCGCTTTGACGTT Found at i:22503003 original size:8 final size:8 Alignment explanation
Indices: 22502990--22503005 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 22502980 ATGCTGGTCG 22502990 CTCATAAA 1 CTCATAAA 22502998 CTCATAAA 1 CTCATAAA 22503006 TTTGGTGAAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25 Consensus pattern (8 bp): CTCATAAA Left flanking sequence: Indices 22502490 -- 22502989 CCTGCTTTAAACTGCTCTCGACCTTTGTCAAAAGTTTTGCGGCCTGAAAACTTTGTGGCAAAAAT CAAACTGTGGATAATGATGAATGCGGCCAGCAGGTTGTGGGCTCTTGGCATGTGGGCCTGAATAA TTATCGCATCGCTGAGTTCGGTATTCGAGGTGGAGTCATGACTTTTGTCTCTGAATGGGCAAACT TGGTCAATTTACATGTCGATTTTAATGGCGAATTTTTGTCAGCTCTTCCGCATTGCGTGTGGCCA TCCAATTTATGGATTTTCCTCAAGTCCCTTTCGGGTCGACGCTCTGATTAGGGTTTGCCTGACCG AGATTTATGCTGCATTTGTTTCCTGCTGTGAGCGTTCCTATTAAGGCTCATTAAGGATCAAGTTC ATGAAGCGGAGTGGTGAGTGGTGAGCCAATAAAATATATTTGTCATCGGTTCTGCTTTAATGGAA AAGAAGTGGTGGCTGACAGTACAGCGAACGCAGCGATGCTGGTCG Right flanking sequence: Indices 22503006 -- 22503505 TTTGGTGAAAAATGGCAAATCGATTCCGCTCTTTTTTGCGGTCATTGTTATTACAAAACTGTCAG AGCCCCGGACCAAGTGGAAGGCAAATGCAGGCTCTATATCTCCAGAGTTCACCTCCCCCCATCTT CAAGTCCCCGGGCAGTTGGCAAATCCCTTTTGATAAAGTGCCTTTCGTCCTTCCAGGCAGACAGG CTCCTTCGAGCTTTTGGCTTCGAGTGTCGCATTATGGCCATTCTCGAAAGGCAACGCCTCGATGG CTTCGCAATTTCCAGCTCAGTTCGCTTTAGTGGCGGATTTGGCAATAAGAGGCGGCCAGATTTAT ACAACTGCTTTCATGCATAATTATTTGCTGACATCTTAATAGTTTTTCCAAGTCTCTTTAGCCGC TTTGACGTTTATTTCAGTAAAGTCAATTTTACAGCCAAAAATTGCTGACAATCGACTGTGCATTG CTTTCGCGAGTGGAAGTGGAAAAGCTGGCTTCATAAATATTTTAG Found at i:22503716 original size:9 final size:9 Alignment explanation
Indices: 22503702--22503722 Score: 35 Period size: 9 Copynumber: 2.3 Consensus size: 9 22503692 GGAGCTCCAT 22503702 AAATAATAC 1 AAATAATAC * 22503711 AAATAATAG 1 AAATAATAC 22503720 AAA 1 AAA 22503723 ACGCTGAAAT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.71, C:0.05, G:0.05, T:0.19 Consensus pattern (9 bp): AAATAATAC Left flanking sequence: Indices 22503202 -- 22503701 TCCTTCGAGCTTTTGGCTTCGAGTGTCGCATTATGGCCATTCTCGAAAGGCAACGCCTCGATGGC TTCGCAATTTCCAGCTCAGTTCGCTTTAGTGGCGGATTTGGCAATAAGAGGCGGCCAGATTTATA CAACTGCTTTCATGCATAATTATTTGCTGACATCTTAATAGTTTTTCCAAGTCTCTTTAGCCGCT TTGACGTTTATTTCAGTAAAGTCAATTTTACAGCCAAAAATTGCTGACAATCGACTGTGCATTGC TTTCGCGAGTGGAAGTGGAAAAGCTGGCTTCATAAATATTTTAGATCCCCACACTTAGGCATAAT TGTTTTGCGGAAGCTTTCCATTTTTATTTGCTTGCTGTGATCCGCAGTGCTCCTTCTGTTTTTTT CTAGGCCGCCCCCTTTGGAGCAGCTGGCATCTGTCAGCCACACACACGCGTGTATTTATTGGAGG CCTCTTAATGGGGCTCCCGTTTAACGACATTGCCAGGAGCTCCAT Right flanking sequence: Indices 22503723 -- 22504222 ACGCTGAAATATAAAATTCCGTTTCCTCGTTTCTGGGCTGCTGGTGCCGAGTCTCGGTATTTGCG TCAATTTGTCGTGTGAGCAACTTTTTTTTGATAGGCCAGCGAGGAAGAATATAGCACGCCGATAA ACCTGGCTGGATTCCACGACTTTCTGCGTACACATCTCTGCCTCTCTATTTGTATGTCTTTCTGT CCCCTTCTCGCCTGGAGGCGGCCCAAAAACAAGCTTAAGTCCTTGTCGTCCTTGGCGTGGCGACG CCACCTTGGGGCTTTTAAGTTTGACGCTCGTTTATAGACTTTGCACAATCTGCATTTACTTTACG GCGCCGCTGATGCGGCTGATAATAAGACCACGCGGCGTATGCGCAATGTTAGGCAGCCAGGATGG GAGGACGGCAGGCGGGCACAGCGGCAGAAAAACAATGGAATCAGCGAAAGTTGCCCAAACTTTTT ACAGCCCGATACACACACGCCTCAGAGACACCTATACAGGAACCA Found at i:22503970 original size:9 final size:9 Alignment explanation
Indices: 22503956--22503975 Score: 33 Period size: 9 Copynumber: 2.2 Consensus size: 9 22503946 ACAAGCTTAA * 22503956 GTCCTTGTC 1 GTCCTTGGC 22503965 GTCCTTGGC 1 GTCCTTGGC 22503974 GT 1 GT 22503976 GGCGACGCCA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.00, C:0.30, G:0.30, T:0.40 Consensus pattern (9 bp): GTCCTTGGC Left flanking sequence: Indices 22503456 -- 22503955 CATTGCTTTCGCGAGTGGAAGTGGAAAAGCTGGCTTCATAAATATTTTAGATCCCCACACTTAGG CATAATTGTTTTGCGGAAGCTTTCCATTTTTATTTGCTTGCTGTGATCCGCAGTGCTCCTTCTGT TTTTTTCTAGGCCGCCCCCTTTGGAGCAGCTGGCATCTGTCAGCCACACACACGCGTGTATTTAT TGGAGGCCTCTTAATGGGGCTCCCGTTTAACGACATTGCCAGGAGCTCCATAAATAATACAAATA ATAGAAAACGCTGAAATATAAAATTCCGTTTCCTCGTTTCTGGGCTGCTGGTGCCGAGTCTCGGT ATTTGCGTCAATTTGTCGTGTGAGCAACTTTTTTTTGATAGGCCAGCGAGGAAGAATATAGCACG CCGATAAACCTGGCTGGATTCCACGACTTTCTGCGTACACATCTCTGCCTCTCTATTTGTATGTC TTTCTGTCCCCTTCTCGCCTGGAGGCGGCCCAAAAACAAGCTTAA Right flanking sequence: Indices 22503976 -- 22504475 GGCGACGCCACCTTGGGGCTTTTAAGTTTGACGCTCGTTTATAGACTTTGCACAATCTGCATTTA CTTTACGGCGCCGCTGATGCGGCTGATAATAAGACCACGCGGCGTATGCGCAATGTTAGGCAGCC AGGATGGGAGGACGGCAGGCGGGCACAGCGGCAGAAAAACAATGGAATCAGCGAAAGTTGCCCAA ACTTTTTACAGCCCGATACACACACGCCTCAGAGACACCTATACAGGAACCAGCAGCCAACATCT CAGCCAGCATCCAACATTCCGCCAGCGGCCATTCGACTCTTGAGGAACTCTCGGGCCACGCTTTT GTTTCGCCGAAGCTTGTTTTATAACTTTTTGATTGTCTTTGCGCCAAATTTGTGCAAAATTGCTC AAGTCTGTGGGCCGAGTTGCTGTCTTGTTGCTCGCACCTGCAAATTGTGCGCGGCATACATTACG GCTGCCATGTATAATATTTGGCTTAATCTGATTTCTGCCACTCAA Found at i:22504858 original size:7 final size:7 Alignment explanation
Indices: 22504846--22504863 Score: 36 Period size: 7 Copynumber: 2.6 Consensus size: 7 22504836 TTGGCATCCT 22504846 GGCAGCA 1 GGCAGCA 22504853 GGCAGCA 1 GGCAGCA 22504860 GGCA 1 GGCA 22504864 TCCTGGCATC Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.28, C:0.28, G:0.44, T:0.00 Consensus pattern (7 bp): GGCAGCA Left flanking sequence: Indices 22504346 -- 22504845 AAATTTGTGCAAAATTGCTCAAGTCTGTGGGCCGAGTTGCTGTCTTGTTGCTCGCACCTGCAAAT TGTGCGCGGCATACATTACGGCTGCCATGTATAATATTTGGCTTAATCTGATTTCTGCCACTCAA GTTAACTTCGACAGCGGGCGAGTCGAAACTTTGCCCGCTGGCAGAGCAACAATTTATAGACCGTT TACAATATTTATTTCGATTCGTGGGCCAACTTTTCTTCCCTGTCCTGGCGTGGCCTGGCCTGGCC TGACCTTACCTGGCCCCCAATTTGTATGACTTTATTTCAGTGCGAGTGCGGTGAGAGTCCATTAA AGTGCAATGGCAGAGAGGCGGGGAAACTTTCATTAGAAATGCCAAAAGCGTCTTTGCACAAGTCA GTACTTACTAGTCCCGGGGGCGGAAGGAGCAGCTAGCTTTGTCAAAGTCCTCACATGTCATACGG CAGACAGGCTGGCTGGCAGAAGGCATCCTGGCATTTTGGCATCCT Right flanking sequence: Indices 22504864 -- 22505363 TCCTGGCATCCCGGCAACAGCCACGCAGTCAGTTAGTCTGCTGCAGGCTACGGGCGTCCATCTAC CCGACTGTCGTCGCCTGTCGTCGCCGTGATGTGTGTACAGTGTACACTGAACACATCCTCGTCGT CGTCCTCGGAATCGTCCTTCTGTGTGGGAACACAGTTACGTCTTCAGTTGTCCTGGGGGCAGGAC GAACCCTGCCATTGAGGCTGCAAGCGAGTGCACATGTGGAAGCAACCACAGTTGCTGGCGGCTGT AGCAATTATTACATCTGTATGGACATGTGGCCACATTAAGTATACGACGCGAAGGCCAGCCAGGA CCTGCGGCTGTTGCTTCTCTTGTCGTCGTGGTGGCCCTGTCGCCCAAGTGGCCTGGCATAATATT TATTCAAATTTGAGTATCGTTAGTGGGCAGCCCTCTGTTTAGCTAGGCAAATTGATTTATGTTTT GCTTTAATTTCAAAATTAAATCCATCTTGAAGAGCTGGGCAAACA Found at i:22504948 original size:10 final size:10 Alignment explanation
Indices: 22504933--22504953 Score: 42 Period size: 10 Copynumber: 2.1 Consensus size: 10 22504923 ATCTACCCGA 22504933 CTGTCGTCGC 1 CTGTCGTCGC 22504943 CTGTCGTCGC 1 CTGTCGTCGC 22504953 C 1 C 22504954 GTGATGTGTG Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.00, C:0.43, G:0.29, T:0.29 Consensus pattern (10 bp): CTGTCGTCGC Left flanking sequence: Indices 22504433 -- 22504932 TGCCATGTATAATATTTGGCTTAATCTGATTTCTGCCACTCAAGTTAACTTCGACAGCGGGCGAG TCGAAACTTTGCCCGCTGGCAGAGCAACAATTTATAGACCGTTTACAATATTTATTTCGATTCGT GGGCCAACTTTTCTTCCCTGTCCTGGCGTGGCCTGGCCTGGCCTGACCTTACCTGGCCCCCAATT TGTATGACTTTATTTCAGTGCGAGTGCGGTGAGAGTCCATTAAAGTGCAATGGCAGAGAGGCGGG GAAACTTTCATTAGAAATGCCAAAAGCGTCTTTGCACAAGTCAGTACTTACTAGTCCCGGGGGCG GAAGGAGCAGCTAGCTTTGTCAAAGTCCTCACATGTCATACGGCAGACAGGCTGGCTGGCAGAAG GCATCCTGGCATTTTGGCATCCTGGCAGCAGGCAGCAGGCATCCTGGCATCCCGGCAACAGCCAC GCAGTCAGTTAGTCTGCTGCAGGCTACGGGCGTCCATCTACCCGA Right flanking sequence: Indices 22504954 -- 22505453 GTGATGTGTGTACAGTGTACACTGAACACATCCTCGTCGTCGTCCTCGGAATCGTCCTTCTGTGT GGGAACACAGTTACGTCTTCAGTTGTCCTGGGGGCAGGACGAACCCTGCCATTGAGGCTGCAAGC GAGTGCACATGTGGAAGCAACCACAGTTGCTGGCGGCTGTAGCAATTATTACATCTGTATGGACA TGTGGCCACATTAAGTATACGACGCGAAGGCCAGCCAGGACCTGCGGCTGTTGCTTCTCTTGTCG TCGTGGTGGCCCTGTCGCCCAAGTGGCCTGGCATAATATTTATTCAAATTTGAGTATCGTTAGTG GGCAGCCCTCTGTTTAGCTAGGCAAATTGATTTATGTTTTGCTTTAATTTCAAAATTAAATCCAT CTTGAAGAGCTGGGCAAACACAGTGTGGGCATCGGCTGGATTAATCCTTTGTGCGCCAGTATGCC CGTCACGTGCGCCTTTTGTTACTTCAGTAAATAAGTGCTCGACAG Found at i:22504973 original size:7 final size:7 Alignment explanation
Indices: 22504961--22504974 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 22504951 GCCGTGATGT 22504961 GTGTACA 1 GTGTACA 22504968 GTGTACA 1 GTGTACA 22504975 CTGAACACAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29 Consensus pattern (7 bp): GTGTACA Left flanking sequence: Indices 22504461 -- 22504960 ATTTCTGCCACTCAAGTTAACTTCGACAGCGGGCGAGTCGAAACTTTGCCCGCTGGCAGAGCAAC AATTTATAGACCGTTTACAATATTTATTTCGATTCGTGGGCCAACTTTTCTTCCCTGTCCTGGCG TGGCCTGGCCTGGCCTGACCTTACCTGGCCCCCAATTTGTATGACTTTATTTCAGTGCGAGTGCG GTGAGAGTCCATTAAAGTGCAATGGCAGAGAGGCGGGGAAACTTTCATTAGAAATGCCAAAAGCG TCTTTGCACAAGTCAGTACTTACTAGTCCCGGGGGCGGAAGGAGCAGCTAGCTTTGTCAAAGTCC TCACATGTCATACGGCAGACAGGCTGGCTGGCAGAAGGCATCCTGGCATTTTGGCATCCTGGCAG CAGGCAGCAGGCATCCTGGCATCCCGGCAACAGCCACGCAGTCAGTTAGTCTGCTGCAGGCTACG GGCGTCCATCTACCCGACTGTCGTCGCCTGTCGTCGCCGTGATGT Right flanking sequence: Indices 22504975 -- 22505474 CTGAACACATCCTCGTCGTCGTCCTCGGAATCGTCCTTCTGTGTGGGAACACAGTTACGTCTTCA GTTGTCCTGGGGGCAGGACGAACCCTGCCATTGAGGCTGCAAGCGAGTGCACATGTGGAAGCAAC CACAGTTGCTGGCGGCTGTAGCAATTATTACATCTGTATGGACATGTGGCCACATTAAGTATACG ACGCGAAGGCCAGCCAGGACCTGCGGCTGTTGCTTCTCTTGTCGTCGTGGTGGCCCTGTCGCCCA AGTGGCCTGGCATAATATTTATTCAAATTTGAGTATCGTTAGTGGGCAGCCCTCTGTTTAGCTAG GCAAATTGATTTATGTTTTGCTTTAATTTCAAAATTAAATCCATCTTGAAGAGCTGGGCAAACAC AGTGTGGGCATCGGCTGGATTAATCCTTTGTGCGCCAGTATGCCCGTCACGTGCGCCTTTTGTTA CTTCAGTAAATAAGTGCTCGACAGCCAGTTGGCAACTCAATTAGG Found at i:22506242 original size:7 final size:7 Alignment explanation
Indices: 22506230--22506243 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 22506220 AATAAGCCAG 22506230 CAATTTA 1 CAATTTA 22506237 CAATTTA 1 CAATTTA 22506244 TATAAATTAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43 Consensus pattern (7 bp): CAATTTA Left flanking sequence: Indices 22505730 -- 22506229 CAAGTCGCTCCATAAAGATTCATTTCGTTTAATGACTTGAAATTGATTTCACTGTGCCATCGGCG CATTTTATATGACGCTGCCTTAAGGATGCCCCACTCCGGCGGGGGTAAATTGCAAAAACGTGCTT TACGACGTCAGGGATGATCACCGTTTGGTTGGGGGTTCTGCTCCGTTTTTATCCCGTCTCCGACT CTGGCTCCTTGGCGTATTAATTTTTGAGCAATTACGTTGCCAGCGACAACGTGAAATAGATACAG GCGAGGAGCCTTCAACCGCTCGAGTTTTACAAGCTTCTCATCGGTTTTTTGATTAACTTTCGCTC GAAATGAAGCTGTAATGAAATTTAATTTTGTGGCATACTTTGGCGTGCTCATTGGATGGTTAATC AAATCAAACTGCCAGAGGCAATACCCATTAGCAGTGACATTTGCAATTCATCGAACTTAACAACG AGGATCGCATGTTGCAAGTGAGTACCGCTGCTGCTAATAAGCCAG Right flanking sequence: Indices 22506244 -- 22506743 TATAAATTAAAAGCATGCGCTACCTGTAAATTGCCAGACATTGCCCACTCCCATATATACTGCGC CCTCGAAATCCCCTTTAAAGAGCGAGACCGGACCGTGGTGGTATATTTATAAAGTAAATAATCGA AGCGTGCCCAATGAATTATTCATGAGCCTTATGGAAAAGCCAGCAGCTAAAGGTGCCAGGTGCTG AGAACGCGTACAGTGCGTGACTTTCGTCCTTTTCGAAGGGCCAAGAAGGACCAATCGATGTCCAG CCGCCCACATACTTGCGCACTATTTGCAATTAGCCATTCAAAAACCTCCATTCATCAGTTTTGCA TATGCATAAAAGTGTTCAACGGCAACATTTATAAAAAGTTAAATTCGGAGAATTCGTTCAGCTCA AACAAGCCTTTAACTCTATTATTCATCTGTATTTATTAAAAGCTAAAAATAAAGTTTTCCTGGTA AATTGGTATAATAAACGAGAAGGACTTATCTGACCTACGCCCACA Found at i:22506492 original size:10 final size:10 Alignment explanation
Indices: 22506473--22506492 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 22506463 CGTCCTTTTC * 22506473 GAAGGGCCAA 1 GAAGGACCAA 22506483 GAAGGACCAA 1 GAAGGACCAA 22506493 TCGATGTCCA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.45, C:0.20, G:0.35, T:0.00 Consensus pattern (10 bp): GAAGGACCAA Left flanking sequence: Indices 22505973 -- 22506472 ACGTGAAATAGATACAGGCGAGGAGCCTTCAACCGCTCGAGTTTTACAAGCTTCTCATCGGTTTT TTGATTAACTTTCGCTCGAAATGAAGCTGTAATGAAATTTAATTTTGTGGCATACTTTGGCGTGC TCATTGGATGGTTAATCAAATCAAACTGCCAGAGGCAATACCCATTAGCAGTGACATTTGCAATT CATCGAACTTAACAACGAGGATCGCATGTTGCAAGTGAGTACCGCTGCTGCTAATAAGCCAGCAA TTTACAATTTATATAAATTAAAAGCATGCGCTACCTGTAAATTGCCAGACATTGCCCACTCCCAT ATATACTGCGCCCTCGAAATCCCCTTTAAAGAGCGAGACCGGACCGTGGTGGTATATTTATAAAG TAAATAATCGAAGCGTGCCCAATGAATTATTCATGAGCCTTATGGAAAAGCCAGCAGCTAAAGGT GCCAGGTGCTGAGAACGCGTACAGTGCGTGACTTTCGTCCTTTTC Right flanking sequence: Indices 22506493 -- 22506992 TCGATGTCCAGCCGCCCACATACTTGCGCACTATTTGCAATTAGCCATTCAAAAACCTCCATTCA TCAGTTTTGCATATGCATAAAAGTGTTCAACGGCAACATTTATAAAAAGTTAAATTCGGAGAATT CGTTCAGCTCAAACAAGCCTTTAACTCTATTATTCATCTGTATTTATTAAAAGCTAAAAATAAAG TTTTCCTGGTAAATTGGTATAATAAACGAGAAGGACTTATCTGACCTACGCCCACAGCAGATGGA GTTTCTACTTAATTTAATCAAAATATGTTTTGTTTCTATTAGAACAGCAAAATAAATTTCAAAAT GTTATTTGCAAAAGCAATGATGCTTCTAAATAACTGGAAGGTTTTAAGTTACCCCAAATATTCTT TTTTTTTTCCAGAAGAAAAATAACTTTTTTGCTTTGGTGTGTGTTTATAACACGAACATTAACAA CTGAAATAGCTCATATTTCCATAGAACCCTAATGATGAGCTGGTC Found at i:22507380 original size:8 final size:8 Alignment explanation
Indices: 22507363--22507381 Score: 31 Period size: 8 Copynumber: 2.4 Consensus size: 8 22507353 CTTTGGCACC 22507363 ACCACCAA 1 ACCACCAA * 22507371 ACCACTAA 1 ACCACCAA 22507379 ACC 1 ACC 22507382 TAAGTAATTA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.47, C:0.47, G:0.00, T:0.05 Consensus pattern (8 bp): ACCACCAA Left flanking sequence: Indices 22506863 -- 22507362 AAGTTACCCCAAATATTCTTTTTTTTTTCCAGAAGAAAAATAACTTTTTTGCTTTGGTGTGTGTT TATAACACGAACATTAACAACTGAAATAGCTCATATTTCCATAGAACCCTAATGATGAGCTGGTC AATATGTCCTATTTTTAATGTACCCAAAACTAATCATCAGAAAGCAATCAGAAATGCCACTACAA ATGGGAGAAACAAACATGAAATCCACAGGAAAAGTACTTACTTATTGGCTTTGTTTGCTGTAATC CTAAAAGTAAAGCGATTATCCAAAACCTATTCATATTTCCGTATTGATTGGTTCCAGCTGCAGTG GCAGATGGGGTAATAGCTTTGTTTAGCCTTAGATTGAAATCAAAAATGGGCACTCGGTACGTTTG CAATATCTAAACTGTAGCACTTGAGCGATCTGATTATCTTCACAAAAATTAATAGCAATAATTTA TCGGTGGCTCGTTCTGGGAATCGGGGGGTTACTACCTTTGGCACC Right flanking sequence: Indices 22507382 -- 22507881 TAAGTAATTATCGATCGCAGTTTCGATTTGGGGAAAGGGAGTTACATGTTTGATTGAACGCGCGC AGCTATTGAGAATTTTATCCTGCGGATCGGATCGCGCGCACTCGCAGGACTCGAAGGACCACGCC GGCAGGTGTCCAGCCCAGCCTTTCACTCTCACAGTAACTCTTCAGCAGGATGCACTTTCACTTTC GGTAACACTACACTACACAGCAGGGTGGAACTTTCGGGCTGAGGCAGTGGCTCACTGGCTCTGGC TTAAAACCACTGGCTCCGGTGCTCTTTGCATGCGCGCACTTGTTGTGCTCGTCGCAAGCGTTTAT CCTAGACTGAAGTGGCAGGCGACACGCACTGGCAGCCTGGAAAGTGGACGGCTCAGGATACACCC ACACCTGCGGCCCCCTTTTTTTTAGTGGGAGTCGAGCCTTTCCAGCCACTTTTCCGAGCCAAGCA CGTAGAGAGAATGGGAGAGAGAGAGAAAGAGCGAAAGCTCGTCGG Found at i:22507504 original size:9 final size:9 Alignment explanation
Indices: 22507486--22507505 Score: 33 Period size: 9 Copynumber: 2.2 Consensus size: 9 22507476 GATCGCGCGC * 22507486 ACTCGCAGG 1 ACTCGAAGG 22507495 ACTCGAAGG 1 ACTCGAAGG 22507504 AC 1 AC 22507506 CACGCCGGCA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.30, C:0.30, G:0.30, T:0.10 Consensus pattern (9 bp): ACTCGAAGG Left flanking sequence: Indices 22506986 -- 22507485 GCTGGTCAATATGTCCTATTTTTAATGTACCCAAAACTAATCATCAGAAAGCAATCAGAAATGCC ACTACAAATGGGAGAAACAAACATGAAATCCACAGGAAAAGTACTTACTTATTGGCTTTGTTTGC TGTAATCCTAAAAGTAAAGCGATTATCCAAAACCTATTCATATTTCCGTATTGATTGGTTCCAGC TGCAGTGGCAGATGGGGTAATAGCTTTGTTTAGCCTTAGATTGAAATCAAAAATGGGCACTCGGT ACGTTTGCAATATCTAAACTGTAGCACTTGAGCGATCTGATTATCTTCACAAAAATTAATAGCAA TAATTTATCGGTGGCTCGTTCTGGGAATCGGGGGGTTACTACCTTTGGCACCACCACCAAACCAC TAAACCTAAGTAATTATCGATCGCAGTTTCGATTTGGGGAAAGGGAGTTACATGTTTGATTGAAC GCGCGCAGCTATTGAGAATTTTATCCTGCGGATCGGATCGCGCGC Right flanking sequence: Indices 22507506 -- 22508005 CACGCCGGCAGGTGTCCAGCCCAGCCTTTCACTCTCACAGTAACTCTTCAGCAGGATGCACTTTC ACTTTCGGTAACACTACACTACACAGCAGGGTGGAACTTTCGGGCTGAGGCAGTGGCTCACTGGC TCTGGCTTAAAACCACTGGCTCCGGTGCTCTTTGCATGCGCGCACTTGTTGTGCTCGTCGCAAGC GTTTATCCTAGACTGAAGTGGCAGGCGACACGCACTGGCAGCCTGGAAAGTGGACGGCTCAGGAT ACACCCACACCTGCGGCCCCCTTTTTTTTAGTGGGAGTCGAGCCTTTCCAGCCACTTTTCCGAGC CAAGCACGTAGAGAGAATGGGAGAGAGAGAGAAAGAGCGAAAGCTCGTCGGAGCTTTTGCCCGCT CACTTATCCGGCCAGTTGTTGCGCCACGGCAACAGTTCCCTGCCGAATCCTGCCCCGAATCCTGC GAGTTCTGCCTGAATCAACAGGCTGCCATTCGGAGCCATTCCATT Found at i:22508092 original size:8 final size:8 Alignment explanation
Indices: 22508079--22508100 Score: 44 Period size: 8 Copynumber: 2.8 Consensus size: 8 22508069 CCAGCCGCGG 22508079 GCCATCTA 1 GCCATCTA 22508087 GCCATCTA 1 GCCATCTA 22508095 GCCATC 1 GCCATC 22508101 CTGCCGACAG Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 14 1.00 ACGTcount: A:0.23, C:0.41, G:0.14, T:0.23 Consensus pattern (8 bp): GCCATCTA Left flanking sequence: Indices 22507579 -- 22508078 TAACACTACACTACACAGCAGGGTGGAACTTTCGGGCTGAGGCAGTGGCTCACTGGCTCTGGCTT AAAACCACTGGCTCCGGTGCTCTTTGCATGCGCGCACTTGTTGTGCTCGTCGCAAGCGTTTATCC TAGACTGAAGTGGCAGGCGACACGCACTGGCAGCCTGGAAAGTGGACGGCTCAGGATACACCCAC ACCTGCGGCCCCCTTTTTTTTAGTGGGAGTCGAGCCTTTCCAGCCACTTTTCCGAGCCAAGCACG TAGAGAGAATGGGAGAGAGAGAGAAAGAGCGAAAGCTCGTCGGAGCTTTTGCCCGCTCACTTATC CGGCCAGTTGTTGCGCCACGGCAACAGTTCCCTGCCGAATCCTGCCCCGAATCCTGCGAGTTCTG CCTGAATCAACAGGCTGCCATTCGGAGCCATTCCATTCCATTCCTTCCACTTTGTTTGCGGGCGG CCAAAAGCAGTCGCTTTAAATGCATTAAGTGTGGCCCAGCCGCGG Right flanking sequence: Indices 22508101 -- 22508600 CTGCCGACAGCACGTCCGTCCGTTGGCCTTGTTTTTTTTAATTACCCAAGCAATTGTCTGTAATT GGTTTCTGTAAAAACAATTTGTGTTATAGTTTCTATTATCGAATTATAGCATAAACCAGTCAGTT TAACAACTAATGGCTGTGCCCTTCAGGAAAATTTATACTTGTTAGCGTGTATGCTTTATAAAGCA AATCAATTGGATTTAATTGATTTTGGTAAAATTATTGTGCTCACTGTTTATTTTTATCAAGAACT TGTTTACAACTATTCTTTCTATGAAATGCCATTTTCTTTTGAGGTCAATATATTTAATATATTCA AATTTTAATTACATTAGGATAACTTATATTTGTCTTCCATTACTGAAAAGTAATTTACATTTGCC ACCATTCTCCTTGTCGAATATTTAAACGTGAATCTACAATATTGTAATGCCTGGCCTTCCTGGCC GACTCGCTCTAATTCATGCGACTCCTTCCGCTCCTTTGACCATGA Found at i:22510281 original size:7 final size:7 Alignment explanation
Indices: 22510269--22510282 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 22510259 GCTCGACCAG 22510269 GAGGATT 1 GAGGATT 22510276 GAGGATT 1 GAGGATT 22510283 TTGGAGTGAG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.00, G:0.43, T:0.29 Consensus pattern (7 bp): GAGGATT Left flanking sequence: Indices 22509769 -- 22510268 ATTTGCAAATTTTAAACGCGAAACTAAAAATGTTTGGTGTGGCTGAGGTCATAAGAAATTTGCTG CCTGTAAAGAAAAAAAAACATGACCCCGGGTAATTTCCAGCACTCAGCCGCAGGAACTTTGGACC GCCCCCGAAATGCCTTTCCATTTAGCCATGTTAAGTTGGCAAAAAGCTCGGCCTTTACTCTGTTT TTTGCGTTGCCTTTTCGGCTGCTGTTCAGCCAACAAAGCTCATTTACAGGGGAAATAGCCTAAGT GCAAAAACCATTTAAATGCAAATTAAGCACAAAGTGAAAACATGTGAACAAAGAGGCTAAAACAC ATACATACGTACCGAATGCTTGTGGAAGCCACGTATTTGGGCCATGCTCCTGGTTTTGGCTCCTA ACGTGGCTTACACATCGGCTCCGGTTTCGCAGGAATGCCCAACAACTTTGGGCTGCTCTAAATGT AAAATAGTTTAGCGCCGCCAGCGCCACAACAAATAGCTCGACCAG Right flanking sequence: Indices 22510283 -- 22510782 TTGGAGTGAGCCCCATGTCCTTCGAACCCTGCTCCTGCTCGGTCTCCGATTTGAATAAATTCATA TGCATAAATGGGCCAGGGAAGTCAACTGCAGCTGACAAAATCAACAACCTGCTCGGAATGCCCGG TAATTGAGTTAAAGATCCAGGTCCCAAGATATCGCCGGCTGCTCCGATGGCCCGGTGGTCGATGG TCTATGGACGGTGGCCATTGCTCCGTTGTCCGGCAACTTCACGAGCAATTTACTCGCTGCGTATC AGCCACGGGCTAATGAAGTTACACACAGCCAGCTGCAGGGGTTGGTTTTATGGCCAAGGTGCATT ACATCGAGCCATGGGTGCCCGTCGATTGCACACCAGTTGAATGAGCTCGGCTCGATGGACACGGA AAGCCAGGGGGCTTCAAATCCTGTCCCCTAGAGGCTCCTGTTTGGGGTGGCATCCTACGAGTAGG TGGCAGGAGCGAGGACTTAAAATATTTTATAGGGGGCTTTACATT Found at