TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_X assembled 2004-3-18 md5checksum:d304f6c7f10939bacf40e33958147342 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 22224390 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Warning! 8514 characters in sequence are not A, C, G, or T Found at i: i:7845568 original size:8 final size:8 Alignment explanation
Indices: 7845555--7845575 Score: 42 Period size: 8 Copynumber: 2.6 Consensus size: 8 7845545 AATTCGCACC 7845555 CACCCGCA 1 CACCCGCA 7845563 CACCCGCA 1 CACCCGCA 7845571 CACCC 1 CACCC 7845576 CCGCACAATC Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 13 1.00 ACGTcount: A:0.24, C:0.67, G:0.10, T:0.00 Consensus pattern (8 bp): CACCCGCA Left flanking sequence: Indices 7845055 -- 7845554 CAGTTCAATACGAATTCAGCGTGGTATTAAATTATTTTGCTTGTATTGTGAAAAACCCTTATTAT TTGTAGCGGAAAATAAGGTCAAGATCCTTGGCTTGGCATCAATCGAAACTCTCACGCCGTCATCT CAATTACGCAAATGCATAGGCGGGACAGCATTTTGGGAAGGCAAGTTCAGTTGCCTGTTTGCCTG CTTGTTTATAAAGCCTGTCCTTCCGTACGTCCGTTTGTCCGTCCGGATGGATGGCTGTCCGTCCG TCCGGATGACTGTCTGTCTGTCTCCGTGAGTGTCAGTCCGTGTGTACGGGTAATGGCGTATGTGT GCGTGTGCTTGTGCGTGTGTCGAGGAATGTGGATGTGGAAGCATGCGTGGGGCATTAAGTTATCA AGTGGAGCAATGGCAATGGCATCGCCGAAGAAGATGGCGGATTTGCGGCCAGCCCTCTCGACTGT GACATGTTTGTTTGTTTCCCAGCTACAAGCATTAAAATTCGCACC Right flanking sequence: Indices 7845576 -- 7846075 CCGCACAATCCGAAGAAACGCAGAGTAGGGTAAAATTGAGATGTAGCAGGACGAAGGAACAAGGA CTAAGGACGATGGTATGCCAGACGGAGTCTGGGCCCGTGTAGGTGGCTTCCTCGCCTCGTAAAGT TCATGGCTTGGTGGCTTGTTCCGAACACCGACTACGACTACTCAGACTACGACTACGACGACGCC TTGGCTGGCAGGACAGAAGGCGTGCATTAAAAATCAATAGAAGTTACAAATGTATCCTTCCATTG CGAAAAAGGGGCAAAACATTTGTGGCGCCATTTGTGCGCTGACAGACTGACTGACTGACTGGCTG ACTAACTGAATGGCCGACTGGCTGACTGGTTCGCTTCGATGCTCCACTGCCCACGACGTCGCTGG TAACTACAAGGGTTATAGGTGTTCCGGGGAACGGAATGTGGACCGTGCAGGTGTGCCAACGTCAT CGGACGACTGATTTTGCAGATCCCCAGCCACAATAGTCCATGCAG Found at i:7846251 original size:9 final size:8 Alignment explanation
Indices: 7846231--7846251 Score: 35 Period size: 8 Copynumber: 2.6 Consensus size: 8 7846221 TATTAAATTT 7846231 TTTTTTCA 1 TTTTTTCA 7846239 TTTTTTCA 1 TTTTTTCA * 7846247 CTTTT 1 TTTTT 7846252 GTCGCCAAAA Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 12 1.00 ACGTcount: A:0.10, C:0.14, G:0.00, T:0.76 Consensus pattern (8 bp): TTTTTTCA Left flanking sequence: Indices 7845731 -- 7846230 CACCGACTACGACTACTCAGACTACGACTACGACGACGCCTTGGCTGGCAGGACAGAAGGCGTGC ATTAAAAATCAATAGAAGTTACAAATGTATCCTTCCATTGCGAAAAAGGGGCAAAACATTTGTGG CGCCATTTGTGCGCTGACAGACTGACTGACTGACTGGCTGACTAACTGAATGGCCGACTGGCTGA CTGGTTCGCTTCGATGCTCCACTGCCCACGACGTCGCTGGTAACTACAAGGGTTATAGGTGTTCC GGGGAACGGAATGTGGACCGTGCAGGTGTGCCAACGTCATCGGACGACTGATTTTGCAGATCCCC AGCCACAATAGTCCATGCAGTGGGATACAATTTATTCGCTCGACATGAAAGCGATAAAAACTGGA AAAAGATAAGCAAGCGGGAGTAAGACTTTTTATGCCAATCATAAAAGACAACTACACTTGCTTAA TATCATTGATAAAGAAAAGGGTAGAAATCCGAAAATATTAAATTT Right flanking sequence: Indices 7846252 -- 7846751 GTCGCCAAAAAATAATCAGTATTTTTGTGATAAGCAAAAAAGTAATGGTCCAAATATGGAATGTC ATACCTCATTGAACTCGTAATAAAATTTCCAATCAAGTGGCATTCACAGCTAGAAATTTTTAATT TGGACCGTTTTTTGCAAAAAAGGATGATGTTACCCCTTACAAAAAATTTGAAAAATTACAAAATT TTAGATTTCTTGAAATCAGCAGGAAAGTGATAGGGATCGTTAGCTAAGATATTAAGCTGCACAAA TCAGTCATTATTTTAGCTGTGCGACCAATTTTAACGAAGTTATGTCCAAAAATTCACTCAAGAAT ATGCAATTTTTCCATTATTTCTTAACTGGATTTTTCGCAAAAAATACTCAGTATTTTTGTCATTA GCAAAAAAGTAATGGTCCAAATATGGAATGCCATACCTCGTTGAACTCGTAATAAAATTTCCAAT CAAGTGGCGTTCACAACTAGAAATTTTTGATTTTTTCAATTTTTC Found at i:7847135 original size:8 final size:8 Alignment explanation
Indices: 7847122--7847138 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 7847112 ATTCGAGTGC 7847122 CCAAACAT 1 CCAAACAT 7847130 CCAAACAT 1 CCAAACAT 7847138 C 1 C 7847139 GAAGGCAACA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.47, C:0.41, G:0.00, T:0.12 Consensus pattern (8 bp): CCAAACAT Left flanking sequence: Indices 7846622 -- 7847121 ACTCAGTATTTTTGTCATTAGCAAAAAAGTAATGGTCCAAATATGGAATGCCATACCTCGTTGAA CTCGTAATAAAATTTCCAATCAAGTGGCGTTCACAACTAGAAATTTTTGATTTTTTCAATTTTTC GCAAAAAAGGATGATGTTACCCCTTAAAAAAAATTTGAAAAATTCAAAAATTTTAAAATTTTTGA AATCAGTAGAAAATTGATAGGGATGGTTAATTTATATAATTAGCTACACGAAACAGTCAATCATT AATCTGTACGACGATTTTTAGCCAAGCGAGATGCCAAAAACACTTTAATACACGAGCTCAAGTCT TGAATTTGTTGTTGTTTGTGCTTATGTGTCGCATTTAATGGCATATTGTTTGGATATCAAATTGA ACTCCAATCAATGCTATATATACACCTTCAATCAAGTACATTTCTATGAGTTTAGGCAAATCCAT TTACTCGATACTCTTGAAGAGATGTAAAGTAAACGATTCGAGTGC Right flanking sequence: Indices 7847139 -- 7847638 GAAGGCAACAAGTCCAAATTGATGCTCAAGTTACGCCAGCTATTTGATGACAGTTCATTGGTCCG ATGGCAGCAACAAAGAGCATTCATGAATCATAAACGGGACAAACATTCTTAATGGCCATCCTAGC TGATGCTCCACTCGATGCACTGTGAAAAAAATAAGTTTCAAATCAAACGAAACATATCGTTGGGC AAGTGAAGACTGTGAGATGAGCAGGCAAGCAGCCCATACGATTTTGTTAGTTACTTCTTTAAAGT AACTAAGCTTTGACTAACTTTTATTGTTTTTTTTTTTTTTGTGCAGTGTAAGTGGCAGTGTGTAT GCGAATGAAACTTTATATGTTCCTTTCGTATTGGCCATCGAGTGTCCATAAAACAAAATTTGAAT GCGAAGCGTAAACATCGAAATAAGCAAAATAATTTGCTATTTTTTATTTCGTCCTTCTGCTTCAT TTTTCCCCATTTGCTGCTCAAATTACGTATCCGACGTGTGGGCGC Found at i:7847858 original size:7 final size:7 Alignment explanation
Indices: 7847846--7847867 Score: 37 Period size: 7 Copynumber: 3.1 Consensus size: 7 7847836 TTTTCTCCTA 7847846 TTTTCTT 1 TTTTCTT 7847853 TTTTCTT 1 TTTTCTT * 7847860 TTTTTTT 1 TTTTCTT 7847867 T 1 T 7847868 ATGTCTGCCG Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 7 14 1.00 ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91 Consensus pattern (7 bp): TTTTCTT Left flanking sequence: Indices 7847346 -- 7847845 TGAGATGAGCAGGCAAGCAGCCCATACGATTTTGTTAGTTACTTCTTTAAAGTAACTAAGCTTTG ACTAACTTTTATTGTTTTTTTTTTTTTTGTGCAGTGTAAGTGGCAGTGTGTATGCGAATGAAACT TTATATGTTCCTTTCGTATTGGCCATCGAGTGTCCATAAAACAAAATTTGAATGCGAAGCGTAAA CATCGAAATAAGCAAAATAATTTGCTATTTTTTATTTCGTCCTTCTGCTTCATTTTTCCCCATTT GCTGCTCAAATTACGTATCCGACGTGTGGGCGCTCGTCCGTCCGGGCTGCCTGCCCACAGGACAT CCCAAATCCGACATAAGTGTCTGATTAGTTCAGGATGGGGCTACTCCACTTATTTACCTTCGACG GTTGGGCCTCATAAATCCATAAGGAACTGACAAAAAAAAAAAAAATAGAAAGAAAAAATGTAAAA GAAACTCGAGTGAAATCACTTTGCTTGTCGTGTGTTTTTCTCCTA Right flanking sequence: Indices 7847868 -- 7848367 ATGTCTGCCGATTGGCCGGCTTACGAGAGCTTTGGAATCAACGGGGCGCCATGGCACGGAGTTGC CCGCAAAAGCCTTGGCCACTTTCTATGCGCCAGACACACGCACATGGTGTATGGAGGAGGAGCTC TGCTCCAGCTTCCTGCTCAATGGCCAGGGCCATGTTGTACCAAACAATTCAATTTATATAATCCG GCGGACAGTGGGTGCCCGGTGGACGGTGCTCCTCCGATTTCTACGTTCCAGGTTAATGTGTCACC AACAGACATCCACGGTGGATGCGAATGTCACGTTAAATGTATCACGTAACTGGATGCGTGTTACA TATTGCTGTGCCCTCCCACAATATCTGTTGTATTTTTTGTAATTTGTATGATTTTTTTTTTTGCC ATTTCCAATCCTTTTGGGCTTTTAAAGTTGCATTTGACTTGTGTAACGCCATTTATGCAAACGCA CATTTGATTGAATTTCGCTCGCAACAAAGTTTATACGAAAAGTAA Found at i:7848807 original size:7 final size:7 Alignment explanation
Indices: 7848792--7848809 Score: 29 Period size: 7 Copynumber: 2.6 Consensus size: 7 7848782 CCGTTAAATC * 7848792 CCCATCA 1 CCCACCA 7848799 CCCACCA 1 CCCACCA 7848806 CCCA 1 CCCA 7848810 ACCTACCCTT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.28, C:0.67, G:0.00, T:0.06 Consensus pattern (7 bp): CCCACCA Left flanking sequence: Indices 7848292 -- 7848791 TGACTTGTGTAACGCCATTTATGCAAACGCACATTTGATTGAATTTCGCTCGCAACAAAGTTTAT ACGAAAAGTAAGCAGTTTAAGTGCGAAAACGAAAGGCTTAATTGCTGTCACTAGAGATGTTCAAT TTGATTCAACAAAAAAAAAAAACTGTTCTTAATTGCTAAATTGAATTTAGCACGCTGTGCAGAAG ATAATGCCTCGCTATCAACAATTGAATTGCAGTTCGCCAATGCGCTGGCATAATAAAGTTATTTG GATTTGATTAGTTAGCTTAAATATTTTATTTAAACTGAATAGTTCTACAAAAATGTTGTAGAATT GTCAGAAATCATATCGGTTATTGTTTATTTTATTAAAAAATCAAAAGATTTTTAACAACGTATTT TTCCAGATTTGTTATGCCAAATACAGTAAATTGGAAAAAAAGCACATTCTGTAAATTGCAACCCA ATCGATTTTCATGAGAGCACAATTAAATGCTTTTACCGTTAAATC Right flanking sequence: Indices 7848810 -- 7849309 ACCTACCCTTTAATTCAGCGGGCGTTTTATGTCTGTCGTCTTAATTGTGTTTGTAGGTCTCACCT TTTTGTGGCACCTGTCCTGACCAACTGCTTCTGAATCCAGCTGGTATTTATTTAATTCGCGTAGA TTTTTATTAATTTTAATTGAAAGCTTTACGAGCATTTCGCTGTGCGCTTTGAGGCTTTGGCCCCC TCTCCTTTTGCCACTTTATACACCCCCACCCCCCCTCACCCACTTTTTCGCAAGCGGCGCCTTTG TTTGAGATTAACTTTGTTTTTGTTTTTTATTTCTCTGCTGGCTGCATTGCTTTTGTTTTATGTGC TCAGCTGCAGTTCTTGCTCACTTGCCCCTTTCTCCCTCTCTCCTCTCTCTCTCTCTCTTCACCAT CTCCTTATTTCTTTCTTCGAGCTTCTGTCCCTTTCTTAGGCCCCTTCTGCTCGACTTTCATCTCT GTCTGTCTCTTTCTTTCGCTTGGTGCTTTTGCTTTTAATGCTCCG Found at i:7850878 original size:9 final size:9 Alignment explanation
Indices: 7850866--7850892 Score: 47 Period size: 9 Copynumber: 3.0 Consensus size: 9 7850856 GTATATGGTG 7850866 TATGCTATA 1 TATGCTATA 7850875 TATGCTATA 1 TATGCTATA * 7850884 TATGCAATA 1 TATGCTATA 7850893 CATATAGGAT Statistics Matches: 17, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 9 17 1.00 ACGTcount: A:0.37, C:0.11, G:0.11, T:0.41 Consensus pattern (9 bp): TATGCTATA Left flanking sequence: Indices 7850366 -- 7850865 TTTTTACTTACCTACCACCAACGACCTCGTCTCATCCACCCACAAATCCCCTTGACAGCTGGAAG TTGCCCTTGTATCTGAATTCATCCGGATTCGGTGTCCTGTTTTTCGGCTTTTTGGCCAACTTGGG TGCGACTGCAATCAGTTGACAATCGAGCAAATCATCCGCTAACTAAGAACAGCCCAAACGACTAA CTAATGAGATAGCCCCTTATTTACATACATACATATATCGCAAATACGTATTAAAGTCTATATAT AGCCTATGCCCATATGGACCCAATAAACGGGGGACATGTATTGGGATTTGGTGTCAGAGTGAAAA CTTGACTGAATAAATAATAAGCTCGAACCAAAGCGGGCCAAAAACTTTGCCCAACATTTATTGGA GTGACTTGAGAGTTTGTTGGGCAAACTTTTAGCTACTCGTGTCGCCGCCGTTCGCCTTTCGGTGG CAGCCCTAATATGTCCGAGGCTAACGTGAGCAGTAGTATATGGTG Right flanking sequence: Indices 7850893 -- 7851392 CATATAGGATATGGTACGTGGATGGCACAGGTCAGGGGGTCAGGAGAGGCCAATGATGGCCATTC TGCGACGTTTGCCAATTTCAGTTCGATTTATTTAGTGGAAACCAATAAATAACCAATGATGTATG TCCTGCTCGCACAAACACTTGCACAACTCGTTCCCCCGAGTGCAGTGTGTGCACAGTGGTGCAAT GTTAACAAAAAATAAAAATAAAAAGAAAACACTAAATGCAACTTTAATATTCATGTGCATTTAAT ACGTTTCGGCTGCCGTTGAATGTTTTGTAGCTATGTAGCTGGCAAACTCGTTTGATAAGATTTGC GACATGAATTTTCGCATTATTTTCGACTTCAACCACTGTTAATCAATTGAAAATTAAATGACTTG ATTAATAATCTGCCCGATTTGGGGATAATTGTCGTTGCACTGTGCCGCGGGTATTGCCTGCAGCT CTCGGTGACATAAAATGGGAATTCCCCCGATCTCTGGCTGTCTTC Found at i:7852706 original size:9 final size:9 Alignment explanation
Indices: 7852694--7852712 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 7852684 GTTTTTTCCA 7852694 TTTTTTGTT 1 TTTTTTGTT 7852703 TTTTTTGTT 1 TTTTTTGTT 7852712 T 1 T 7852713 GTAATTCTCA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89 Consensus pattern (9 bp): TTTTTTGTT Left flanking sequence: Indices 7852194 -- 7852693 ATTCTTAAGAGACCACGATTGGCTGACTTCGATGGTGGTTGTAAGAACTTTAATACGATTTAAGA TGACCAAAGGAATGGTGGGATGTGGCGTGTGGCATGTGGCATGTGGAAGGTAGGTGGGTAACACA ACCGCGAGACCTTCACGGAATGCAATCCGGTAGATGCTTACAACGCTCCAGGGGCAAATCCCACT TGATCATATTGGTATACAAACACTAAAAAGAAGGCGAGCTGCTTAAAAAAAATAACGATATGTAA GGAATAAAAAGTATATATTTCAATGTTATTTGAAGGAATTCTTTTCGGATGCACAGCGTTCACAA ATTTGATCCGTTTTGCGGCCATTTGGATGGGCTTATCATTGACTTGGAAAATTGTTTTCGCCAGT TTTAAGAGATGGGGTATTTTGGATGAAAGAAAAGTGACTCCAAAGAATTTTCTGGGAATATGTAA TTTCATCAGCACGAGTGAATGAGCTTAAAATGTATGTTTTTTCCA Right flanking sequence: Indices 7852713 -- 7853212 GTAATTCTCAGAGCACACAATGCATTAATTGATAACAATAACTTGACAGACAGAGCTGTTGAATA AATAATGACATTCAGTACAGCTTATTAAATATTAATACGAGAATTTTTGATTTCGAAAACATTTT AAAAGTTCGCCATGCAGCTGGAATGATGGTTTACTTTAACACATTTGTTTTCATCTTTTATTTTA TATTATTTAAATGCTCACCTGGTGAAAGTGTGCACTTTTTTCTTTTTCTTAATAAGCTTTACGAT TGCTTCGCGGTTTCGCAAGTATTTCGTTAAGGAAATCAGATTTTATTTTCCGAGTGAAATGGTCA CTTGATTGAATTTCGATTCAAATGGAAACTGAAAGGGAACCTTCGATAACTTTGACCTGAATATC TACTTTTTTTTTTTTGCCAGGTAACACGGATCGGTTAATGCGCATTCATTTATTTACTCGCAGTT TTCTGGCCTCTTTCTTCGTTAGTGGCTCATTCAGGGCTTCGTTTC Found at i:7853920 original size:7 final size:7 Alignment explanation
Indices: 7853908--7853921 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 7853898 TTTTTTTTTT 7853908 GTCCAAA 1 GTCCAAA 7853915 GTCCAAA 1 GTCCAAA 7853922 AACTACTTGA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.29, G:0.14, T:0.14 Consensus pattern (7 bp): GTCCAAA Left flanking sequence: Indices 7853408 -- 7853907 GGCTTCCACTTCTGCTTGAGCTTTATGCGGACGATTGGCAACAAAAGCTGCCAATTTGTATTTCA ATTAAATTTGAATGTATTTGTGGGCACTTGGCTGCTGCTTTCTCCCCAGCTTTTCCAGACTTCCG CTCTCGCTTTTTCTTAGCCGCTTCGCGAAGACGCTTCTTCATCAGCTCCTTGGCTAAAGGGTATG CGCTTAATATCGGGGTATATTCCATTTGTGCACTTACAAATTATATTTTCGAAATATTTGAATTG AAAGATAAAGATAAGTGTCGAAAGTTATGGACAGCACTGCGTATACGTAATATTTTAGCTTCGAC CAAGAGGCAACGGTGCGTATGACTTTTTAACTGGAATATTACTTCGCAGGCAATCTTATGATTTT AGATACAATCTGTTATATACTCTCAATGTCAGAATATGAATTTTATGAATATAATATGTTATTAA CCGAGTTTAAATGTTTTTATCATTGCCCTTATAAATTTTTTTTTT Right flanking sequence: Indices 7853922 -- 7854421 AACTACTTGAAGTGTATCCAAACCAATGGGTAACTCGCAATTGAAAGCTGTTTCCCCTTGTTTAC ACTTTTTGCTGAGAACTTAAATCCATCAGTGAAGCGTGGGAGTGGCCAAAAAAAGGGGGCGAACG GATATTCCGGGAAAGGGGTTCTTTTCCAGAAGGTGGCGGTGGCAGCGGTGGGCGACGGACTGTGG AATTGCCGCCGCCAGCCAAGTGTCAAAATGGCGCTTCCAAGTAATTTACTTATGTCTAAACAACT TTTATTGTTGTTGCCGTTACGCTGCTTGTTAACGCGTTGTTTCTGGCCCAGTTGCTTCTGCTGTC GTTGCTGTTGCTGTTGTTGCTGTTGCTGTTGTTATTTCTGGGGCGTTGAAAAGCGTTTAATTAAC TAACTGCTCACCATATAGCCGCGCTTAGTTTTCGGCAAATATTTGTTAATTCCCAAACCACTTGA ATGCGCTCGTTTTGGCTGCGCCTCAATTAGCGCGCCAAAGTAAAT Found at i:7854565 original size:7 final size:8 Alignment explanation
Indices: 7854548--7854565 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 7854538 TTGAATCCAT 7854548 CCCACATC 1 CCCACATC * 7854556 CCCACACC 1 CCCACATC 7854564 CC 1 CC 7854566 TCCGCACGTC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.22, C:0.72, G:0.00, T:0.06 Consensus pattern (8 bp): CCCACATC Left flanking sequence: Indices 7854048 -- 7854547 AACGGATATTCCGGGAAAGGGGTTCTTTTCCAGAAGGTGGCGGTGGCAGCGGTGGGCGACGGACT GTGGAATTGCCGCCGCCAGCCAAGTGTCAAAATGGCGCTTCCAAGTAATTTACTTATGTCTAAAC AACTTTTATTGTTGTTGCCGTTACGCTGCTTGTTAACGCGTTGTTTCTGGCCCAGTTGCTTCTGC TGTCGTTGCTGTTGCTGTTGTTGCTGTTGCTGTTGTTATTTCTGGGGCGTTGAAAAGCGTTTAAT TAACTAACTGCTCACCATATAGCCGCGCTTAGTTTTCGGCAAATATTTGTTAATTCCCAAACCAC TTGAATGCGCTCGTTTTGGCTGCGCCTCAATTAGCGCGCCAAAGTAAATCTATTTTAAATTGATT TTCGTTGCCTGATTAAATTAGTTTCGCCCGTGCAACGTTTGCTCAGCCCCATCCACTTTTAGCCA TCCCGTTCTTGTCCTTGTGGTGTATAATTTCATTTTTGAATCCAT Right flanking sequence: Indices 7854566 -- 7855065 TCCGCACGTCGCTCTCTTTTAGCCAATTACAAAACGCTGGCGGGCTTCATTTCGTTCTCAAATGT TTCCATGTGGAACATTTCGCAACTCATTAAAGTCGACGAAGTGGAGGCGGCATTGCGCTGCAAAG AATAAGTATTTAAGATCTATTATAATCGTTCATTTAGTTTACATTTCAGATTTTAATATTTAATT TTTTTGTATAAATTGTATTTATTTTTAGACAGAAGCACACGCATGAAATCCGCATTTTAATGATC TTTAATCCGCTTTTTCTCTCAGTAGTAGCACTAAAATTTGTGCGGATTTATTATGGCTTCAAAAT GTTCTATGCAAAATTCAAATTTCTCTTCTGTCTGCCGCCAGTCATTTTGGCGGAGTTGGCCTGGC CCAAAACCAAAGTCCATACCAGAAGCAACTCCAGCTCTAGAGCCAAATCCAAATCCACATCCAAA TCCATATCCATGAAGCGACTGAGGCAACCAAGCAGCCACTGCTCC Found at i:7854757 original size:7 final size:7 Alignment explanation
Indices: 7854747--7854763 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 7854737 CATTTCAGAT 7854747 TTTAATA 1 TTTAATA * 7854754 TTTAATT 1 TTTAATA 7854761 TTT 1 TTT 7854764 TTGTATAAAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71 Consensus pattern (7 bp): TTTAATA Left flanking sequence: Indices 7854247 -- 7854746 GTTGCTGTTGCTGTTGTTGCTGTTGCTGTTGTTATTTCTGGGGCGTTGAAAAGCGTTTAATTAAC TAACTGCTCACCATATAGCCGCGCTTAGTTTTCGGCAAATATTTGTTAATTCCCAAACCACTTGA ATGCGCTCGTTTTGGCTGCGCCTCAATTAGCGCGCCAAAGTAAATCTATTTTAAATTGATTTTCG TTGCCTGATTAAATTAGTTTCGCCCGTGCAACGTTTGCTCAGCCCCATCCACTTTTAGCCATCCC GTTCTTGTCCTTGTGGTGTATAATTTCATTTTTGAATCCATCCCACATCCCCACACCCCTCCGCA CGTCGCTCTCTTTTAGCCAATTACAAAACGCTGGCGGGCTTCATTTCGTTCTCAAATGTTTCCAT GTGGAACATTTCGCAACTCATTAAAGTCGACGAAGTGGAGGCGGCATTGCGCTGCAAAGAATAAG TATTTAAGATCTATTATAATCGTTCATTTAGTTTACATTTCAGAT Right flanking sequence: Indices 7854764 -- 7855263 TTGTATAAATTGTATTTATTTTTAGACAGAAGCACACGCATGAAATCCGCATTTTAATGATCTTT AATCCGCTTTTTCTCTCAGTAGTAGCACTAAAATTTGTGCGGATTTATTATGGCTTCAAAATGTT CTATGCAAAATTCAAATTTCTCTTCTGTCTGCCGCCAGTCATTTTGGCGGAGTTGGCCTGGCCCA AAACCAAAGTCCATACCAGAAGCAACTCCAGCTCTAGAGCCAAATCCAAATCCACATCCAAATCC ATATCCATGAAGCGACTGAGGCAACCAAGCAGCCACTGCTCCTCTGCCGATTTGGGTCAACTATG GTATGTGGCGCACATTAAAAGGAAAACCATTTGGAAATCGGGAATCATCAGCCGATCCATTCTGC ATCCTTCAGCCTTCATCCTTCATCTTGCATGCATCCTCCATTCAACAATCTCCATGCAGCCATTA TCGCATCGCCGGGCGTTCGAGTGCGATGCATCAAGTGCCCAAGAG Found at i:7855393 original size:7 final size:7 Alignment explanation
Indices: 7855383--7855397 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 7855373 CAGCGAGCAG 7855383 GGAATAT 1 GGAATAT 7855390 GGAATAT 1 GGAATAT 7855397 G 1 G 7855398 AAAGGAGTAG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.40, C:0.00, G:0.33, T:0.27 Consensus pattern (7 bp): GGAATAT Left flanking sequence: Indices 7854883 -- 7855382 TTCAAAATGTTCTATGCAAAATTCAAATTTCTCTTCTGTCTGCCGCCAGTCATTTTGGCGGAGTT GGCCTGGCCCAAAACCAAAGTCCATACCAGAAGCAACTCCAGCTCTAGAGCCAAATCCAAATCCA CATCCAAATCCATATCCATGAAGCGACTGAGGCAACCAAGCAGCCACTGCTCCTCTGCCGATTTG GGTCAACTATGGTATGTGGCGCACATTAAAAGGAAAACCATTTGGAAATCGGGAATCATCAGCCG ATCCATTCTGCATCCTTCAGCCTTCATCCTTCATCTTGCATGCATCCTCCATTCAACAATCTCCA TGCAGCCATTATCGCATCGCCGGGCGTTCGAGTGCGATGCATCAAGTGCCCAAGAGTCCCAGTGC CCAAGTGCCCGAGTGCCCAAAAGGGTCGTTCTGTCCAACATCGAAGAATGGAAAAAAATTCCAAA TCGAGGACGTTGCGATTAAGGGGCGTGGCCAGGAGCAGCGAGCAG Right flanking sequence: Indices 7855398 -- 7855897 AAAGGAGTAGAGCGGAGAGTGAAGGTGGAGTGGACCGAAGCGATGGGGTACTTTCATTGAGTACT TTCCATTTGAAACTCATTAGTGAGAGTTCAGTTGGGTTGCAAATGTGGGAGTTGCCATGCAGAGA ATGCGGGCGATGTGAAGAATGTTGTGGAATGTGACGGCGATGGGCGGTATTTTAGCCTGGGGGCG TGTCAATGTCTTCATTGCAGCCAAATTGAATCATACATACAAGCATGAGTATGTGTGTGTGTGTG TGTTGGCCATGTGCAGCAGCTGTGTGTGTGTGTTAGCCATGCAAATGTTGAGCCATTATTAAGTC ACTAAAGCGCTCGACGATGGGCGCCTATATTGGTCAAGCCCCCAGTCAGACCTCGGTAATTTTTC TACTTTTGGCCTACATTTCATTAACAGCAGCGCATTAATTAGTGACTTGTTTTTTTTTTTTTTTA ATTGCCAGCGGAGGTCTAATGATGACATTTTGATGTTAAAATGAA Found at i:7856035 original size:9 final size:8 Alignment explanation
Indices: 7856023--7856040 Score: 27 Period size: 8 Copynumber: 2.1 Consensus size: 8 7856013 AGCAGTATTT 7856023 TGTTAATAA 1 TGTT-ATAA 7856032 TGTTATAA 1 TGTTATAA 7856040 T 1 T 7856041 AAAATATGAT Statistics Matches: 9, Mismatches: 0, Indels: 1 0.90 0.00 0.10 Matches are distributed among these distances: 8 5 0.56 9 4 0.44 ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50 Consensus pattern (8 bp): TGTTATAA Left flanking sequence: Indices 7855523 -- 7856022 AGAGAATGCGGGCGATGTGAAGAATGTTGTGGAATGTGACGGCGATGGGCGGTATTTTAGCCTGG GGGCGTGTCAATGTCTTCATTGCAGCCAAATTGAATCATACATACAAGCATGAGTATGTGTGTGT GTGTGTGTTGGCCATGTGCAGCAGCTGTGTGTGTGTGTTAGCCATGCAAATGTTGAGCCATTATT AAGTCACTAAAGCGCTCGACGATGGGCGCCTATATTGGTCAAGCCCCCAGTCAGACCTCGGTAAT TTTTCTACTTTTGGCCTACATTTCATTAACAGCAGCGCATTAATTAGTGACTTGTTTTTTTTTTT TTTTAATTGCCAGCGGAGGTCTAATGATGACATTTTGATGTTAAAATGAAAACTGCAAGCCGAAG CTTTAATGCACTTTTTGCTATACGAAACTGAAATGTCAACTTGCTTTTACTTACTTTGGGCATAT ATATATTATTAATAATGTAATTTATATAATTTATTAGCAGTATTT Right flanking sequence: Indices 7856041 -- 7856540 AAAATATGATTGAATGCGAAACAATAATTCATCAACAATTTATGTTAGATACCACCATTGTACTT TGTACTCATCCTAGGCATATATGAAATCAACATTATGCAAATGCATATGTGTACATATATGTATA TACTAACATATATGTACATGTGTACATATACATATGTATACGTATCTGGCTCAGCCCTCGACATA TGTACATTTAATTCAATTCAGTTACATTCCATACGTTCTCGTCGTCTGTTTGTCTATTTTAATGT TATTTTATTTTTTTTTTTATTTTTTTTAATTTAAATTTCATTTCCATTTCTTGCTGGCACATCCC AAGGTGGCGGGTGTTGCAAGGGACACAAAAGGCGGGGCAGATGTGAATGGGCATGCTGCATTAGC ACAAAGCCAACAACAACGGCAGACAACAGTTGTTGCTAAAATAATTCAACCAGAGTTTGGACTTC ATAAAGGGGCAAAAGTGGTGTTGGTGGACGACCACTTTCATATGC Found at i:7856110 original size:7 final size:7 Alignment explanation
Indices: 7856098--7856111 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 7856088 GATACCACCA 7856098 TTGTACT 1 TTGTACT 7856105 TTGTACT 1 TTGTACT 7856112 CATCCTAGGC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.14, G:0.14, T:0.57 Consensus pattern (7 bp): TTGTACT Left flanking sequence: Indices 7855598 -- 7856097 ATGTCTTCATTGCAGCCAAATTGAATCATACATACAAGCATGAGTATGTGTGTGTGTGTGTGTTG GCCATGTGCAGCAGCTGTGTGTGTGTGTTAGCCATGCAAATGTTGAGCCATTATTAAGTCACTAA AGCGCTCGACGATGGGCGCCTATATTGGTCAAGCCCCCAGTCAGACCTCGGTAATTTTTCTACTT TTGGCCTACATTTCATTAACAGCAGCGCATTAATTAGTGACTTGTTTTTTTTTTTTTTTAATTGC CAGCGGAGGTCTAATGATGACATTTTGATGTTAAAATGAAAACTGCAAGCCGAAGCTTTAATGCA CTTTTTGCTATACGAAACTGAAATGTCAACTTGCTTTTACTTACTTTGGGCATATATATATTATT AATAATGTAATTTATATAATTTATTAGCAGTATTTTGTTAATAATGTTATAATAAAATATGATTG AATGCGAAACAATAATTCATCAACAATTTATGTTAGATACCACCA Right flanking sequence: Indices 7856112 -- 7856611 CATCCTAGGCATATATGAAATCAACATTATGCAAATGCATATGTGTACATATATGTATATACTAA CATATATGTACATGTGTACATATACATATGTATACGTATCTGGCTCAGCCCTCGACATATGTACA TTTAATTCAATTCAGTTACATTCCATACGTTCTCGTCGTCTGTTTGTCTATTTTAATGTTATTTT ATTTTTTTTTTTATTTTTTTTAATTTAAATTTCATTTCCATTTCTTGCTGGCACATCCCAAGGTG GCGGGTGTTGCAAGGGACACAAAAGGCGGGGCAGATGTGAATGGGCATGCTGCATTAGCACAAAG CCAACAACAACGGCAGACAACAGTTGTTGCTAAAATAATTCAACCAGAGTTTGGACTTCATAAAG GGGCAAAAGTGGTGTTGGTGGACGACCACTTTCATATGCACACACACACACACACACATACACAC ACACAGGCAGAAACAAACGGCAGCATGAGCAACACAACAAGCATA Found at i:7857056 original size:7 final size:7 Alignment explanation
Indices: 7857041--7857057 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 7857031 GATACCACAA * 7857041 GAGAGGG 1 GAGACGG 7857048 GAGACGG 1 GAGACGG 7857055 GAG 1 GAG 7857058 CAGCAGCAGA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.29, C:0.06, G:0.65, T:0.00 Consensus pattern (7 bp): GAGACGG Left flanking sequence: Indices 7856541 -- 7857040 ACACACACACACACACACATACACACACACAGGCAGAAACAAACGGCAGCATGAGCAACACAACA AGCATACATACATATACATATACACGAGCACTGAGAGAAATTTGTTGGGCGATCCATTCATTTGA ATTTTAATCGAATCAAAACTTTAATATATATATATAACTGATATTATTTACATTCTTTAAACTTT TTTTCTCTGTGTATGCAAAGGACACATGACGGTGGGCCGACCGAAAACTTTATGTGTCAGTTGAA AAGTATCTTGGAGATACTTTCTTGCCTCCTTCTTAGCCATGAATCCCCATCGCCATTGCCATTCC CATGCCACCCCCAATTCCCCTCCTTTCGCCTACTGTGGCTTTTGGCGCAGCAACCGCCACAATGT CATTAACCAAATGAATGGCTGACACTGCAGATTCGAATGACTGAAACAACGGGCAATGGAAGGGG GGGGGGGCTGTGAAACGGGGAGATACATATACAAAGATACCACAA Right flanking sequence: Indices 7857058 -- 7857557 CAGCAGCAGAGGAGCAGGCCAAGTTAAGACTGTGACGTCCTTTTCTTGTGATTAAGTCGGTTACC CACCCAGTGGATACCAGTCAGCCCATCAGTCTCCCCAACCTCATTCAAATCCCATTCCCACACCC CACACCCCACCGACCATTTGCCGTTTAGCCGTAGATTACCTAGTGACTTGTTCCCTTACCTTTCT CTTAGCCCGGCCTAAACAAACCCAAAATAAGGCAAGGAGTCCGACAAAGACAGCCTCGTCAACGG TTCTGATACACTTGTTATTCGAACAGTTTTCGAATTTAAGGGAATGGTTTTTAATGCTTGTTAAG TTTAAAAAAAAATATATTGAAAAGATATGAACTTATTATACACGTAACTAAAGATAAAAGATACA CAACAATATTTTCTATAAGCAGTTCACACAGTTTTTTCTTCTTTTTGAATATTTAATAAAGATGC TTTAAAGTGGATAGGTGATATATATATATATATTTTGAAATACCC Found at i:7857191 original size:7 final size:7 Alignment explanation
Indices: 7857179--7857197 Score: 38 Period size: 7 Copynumber: 2.7 Consensus size: 7 7857169 AAATCCCATT 7857179 CCCACAC 1 CCCACAC 7857186 CCCACAC 1 CCCACAC 7857193 CCCAC 1 CCCAC 7857198 CGACCATTTG Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.26, C:0.74, G:0.00, T:0.00 Consensus pattern (7 bp): CCCACAC Left flanking sequence: Indices 7856679 -- 7857178 CGAATCAAAACTTTAATATATATATATAACTGATATTATTTACATTCTTTAAACTTTTTTTCTCT GTGTATGCAAAGGACACATGACGGTGGGCCGACCGAAAACTTTATGTGTCAGTTGAAAAGTATCT TGGAGATACTTTCTTGCCTCCTTCTTAGCCATGAATCCCCATCGCCATTGCCATTCCCATGCCAC CCCCAATTCCCCTCCTTTCGCCTACTGTGGCTTTTGGCGCAGCAACCGCCACAATGTCATTAACC AAATGAATGGCTGACACTGCAGATTCGAATGACTGAAACAACGGGCAATGGAAGGGGGGGGGGGC TGTGAAACGGGGAGATACATATACAAAGATACCACAAGAGAGGGGAGACGGGAGCAGCAGCAGAG GAGCAGGCCAAGTTAAGACTGTGACGTCCTTTTCTTGTGATTAAGTCGGTTACCCACCCAGTGGA TACCAGTCAGCCCATCAGTCTCCCCAACCTCATTCAAATCCCATT Right flanking sequence: Indices 7857198 -- 7857697 CGACCATTTGCCGTTTAGCCGTAGATTACCTAGTGACTTGTTCCCTTACCTTTCTCTTAGCCCGG CCTAAACAAACCCAAAATAAGGCAAGGAGTCCGACAAAGACAGCCTCGTCAACGGTTCTGATACA CTTGTTATTCGAACAGTTTTCGAATTTAAGGGAATGGTTTTTAATGCTTGTTAAGTTTAAAAAAA AATATATTGAAAAGATATGAACTTATTATACACGTAACTAAAGATAAAAGATACACAACAATATT TTCTATAAGCAGTTCACACAGTTTTTTCTTCTTTTTGAATATTTAATAAAGATGCTTTAAAGTGG ATAGGTGATATATATATATATATTTTGAAATACCCAAAACTCCAACCAGAATCGAAGAGTATGTG GGCAGAAGGAGCAAATTTTGTTTTGGCCAAGTGCCGTTGGCGATGGTCAAATGGGGCTCGCAGGA ATGTTAGTGATGACAACAACTTAATGGAAATAGCTGCACATTTAT Found at i:7857444 original size:7 final size:7 Alignment explanation
Indices: 7857432--7857445 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 7857422 ACACGTAACT 7857432 AAAGATA 1 AAAGATA 7857439 AAAGATA 1 AAAGATA 7857446 CACAACAATA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14 Consensus pattern (7 bp): AAAGATA Left flanking sequence: Indices 7856932 -- 7857431 ATTAACCAAATGAATGGCTGACACTGCAGATTCGAATGACTGAAACAACGGGCAATGGAAGGGGG GGGGGGCTGTGAAACGGGGAGATACATATACAAAGATACCACAAGAGAGGGGAGACGGGAGCAGC AGCAGAGGAGCAGGCCAAGTTAAGACTGTGACGTCCTTTTCTTGTGATTAAGTCGGTTACCCACC CAGTGGATACCAGTCAGCCCATCAGTCTCCCCAACCTCATTCAAATCCCATTCCCACACCCCACA CCCCACCGACCATTTGCCGTTTAGCCGTAGATTACCTAGTGACTTGTTCCCTTACCTTTCTCTTA GCCCGGCCTAAACAAACCCAAAATAAGGCAAGGAGTCCGACAAAGACAGCCTCGTCAACGGTTCT GATACACTTGTTATTCGAACAGTTTTCGAATTTAAGGGAATGGTTTTTAATGCTTGTTAAGTTTA AAAAAAAATATATTGAAAAGATATGAACTTATTATACACGTAACT Right flanking sequence: Indices 7857446 -- 7857945 CACAACAATATTTTCTATAAGCAGTTCACACAGTTTTTTCTTCTTTTTGAATATTTAATAAAGAT GCTTTAAAGTGGATAGGTGATATATATATATATATTTTGAAATACCCAAAACTCCAACCAGAATC GAAGAGTATGTGGGCAGAAGGAGCAAATTTTGTTTTGGCCAAGTGCCGTTGGCGATGGTCAAATG GGGCTCGCAGGAATGTTAGTGATGACAACAACTTAATGGAAATAGCTGCACATTTATAAGTGACA ACTCTGCAGCTGTGTTCGTGCGTGTATCTGTGTGTGAGTATATGTATCTGTATCTGTATCCGTAT CTGTATCTGTAGGTACGTGTGTGTGGCACGTTTGTGTTGGTGTATCCAGGACCCTAAAGAACGTG TTATTTATGGTCAAGGCGTGGCAGACAAATGGCCGGCATATGCATGCTGAGATAGACACACAGAC ACACACACACACACACACACACACAGATGCCAAGTAATAACTAAC Found at i:7858486 original size:9 final size:8 Alignment explanation
Indices: 7858468--7858486 Score: 38 Period size: 8 Copynumber: 2.4 Consensus size: 8 7858458 TTTCATCAGC 7858468 TTTCTTTT 1 TTTCTTTT 7858476 TTTCTTTT 1 TTTCTTTT 7858484 TTT 1 TTT 7858487 GATCACCTTA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89 Consensus pattern (8 bp): TTTCTTTT Left flanking sequence: Indices 7857968 -- 7858467 GTGCAAAAAAGGCAGCAAAATAGCAAAAGGAAAATTGCCCAAAGATGAAACCTAATTTAGCCAAC ACGCACACACACTCACTCACCCACTCAGGCACACTGATAAGCCTGTGAGCCACAACGCCAACAGC CAACCACCATCCACAGGCCACTGCCACGCCCCATTCGCCCCTTTTTTTTTTTTTGCTTTTGTAGT ACCAAGTTAACGGGACAAGTGCCTTATAGCCAAGAACATCAAAGGGGACTTTCGGTACATCATAA AACCCGAATCAGTTGGGTGGACTGATTAGCTCTCAAGAACTTGACTTGAGATCCGGAAATCCGTG ATAACACGGCATACATACTTGTATTTATTAAATACTAATTGGATTAATATATTGTATATATATAT ATACCTGTGATTGAAACTAGAGAAATGAGAAAGACCATCTAAGCAATGTAGGCTTTTAGAGAGTC CTGCATAGTTGGCATATGGAAACCCAATATGTTTCTTTCATCAGC Right flanking sequence: Indices 7858487 -- 7858986 GATCACCTTAGATTGTTCTTCTTCGGTTTCTCCGTTTGCTACTCGGCCGATTTAGACATTTTTTT TTGCTAGAGGCATCAAAGGACCAAATGAAAACGTGGTCCTTGGTCCTTGGTCCTTCGTCACCAAG CAGCCAGCATGCAGTTTTGCAGCTGCACTCGTTTGAACATCGCTTGTTATCCATTTGAAGTTGAA GTGGGTATTTTTTATTTATTTTTTGTTACTATATAAATTGGTTGTTTTGTTGCGGACGCAAAGTT TGCAAATGGCGAAAAAGTATTTACAAAAAAAACCCTATTTCGTTCGCATCAACAGCTGGGATAAA CTTTCGCAATTCATTATTACGAACAGATCAGAAAGTTGATAGTTTTATTTAATTTGTGTCACTAA CCCTTTTCGAACTTTTGCACACAGAGAAAATCAAAAATTAAATGTTCTGCGCAAAAGGTAAAAGT TATATTTTTAAATTGTATTGTTTTGTTTTACGCTTGAATGCGTTG Found at i:7858597 original size:7 final size:7 Alignment explanation
Indices: 7858585--7858610 Score: 45 Period size: 7 Copynumber: 3.7 Consensus size: 7 7858575 AATGAAAACG 7858585 TGGTCCT 1 TGGTCCT 7858592 TGGTCCT 1 TGGTCCT 7858599 TGGTCCT 1 TGGTCCT * 7858606 TCGTC 1 TGGTC 7858611 ACCAAGCAGC Statistics Matches: 18, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 7 18 1.00 ACGTcount: A:0.00, C:0.31, G:0.27, T:0.42 Consensus pattern (7 bp): TGGTCCT Left flanking sequence: Indices 7858085 -- 7858584 CAACGCCAACAGCCAACCACCATCCACAGGCCACTGCCACGCCCCATTCGCCCCTTTTTTTTTTT TTGCTTTTGTAGTACCAAGTTAACGGGACAAGTGCCTTATAGCCAAGAACATCAAAGGGGACTTT CGGTACATCATAAAACCCGAATCAGTTGGGTGGACTGATTAGCTCTCAAGAACTTGACTTGAGAT CCGGAAATCCGTGATAACACGGCATACATACTTGTATTTATTAAATACTAATTGGATTAATATAT TGTATATATATATATACCTGTGATTGAAACTAGAGAAATGAGAAAGACCATCTAAGCAATGTAGG CTTTTAGAGAGTCCTGCATAGTTGGCATATGGAAACCCAATATGTTTCTTTCATCAGCTTTCTTT TTTTCTTTTTTTGATCACCTTAGATTGTTCTTCTTCGGTTTCTCCGTTTGCTACTCGGCCGATTT AGACATTTTTTTTTGCTAGAGGCATCAAAGGACCAAATGAAAACG Right flanking sequence: Indices 7858611 -- 7859110 ACCAAGCAGCCAGCATGCAGTTTTGCAGCTGCACTCGTTTGAACATCGCTTGTTATCCATTTGAA GTTGAAGTGGGTATTTTTTATTTATTTTTTGTTACTATATAAATTGGTTGTTTTGTTGCGGACGC AAAGTTTGCAAATGGCGAAAAAGTATTTACAAAAAAAACCCTATTTCGTTCGCATCAACAGCTGG GATAAACTTTCGCAATTCATTATTACGAACAGATCAGAAAGTTGATAGTTTTATTTAATTTGTGT CACTAACCCTTTTCGAACTTTTGCACACAGAGAAAATCAAAAATTAAATGTTCTGCGCAAAAGGT AAAAGTTATATTTTTAAATTGTATTGTTTTGTTTTACGCTTGAATGCGTTGTTTTTTATTAAGTG TTTGGAATTTAAGTAATATATTGTTTTGTGCTTGTTTTTTGTTTAGATTGGGACTAAGCTGAAAT GGCTTAAATTATAGGGTATTTTTGGCATCGATCATGATTCATGCG Found at i:7859708 original size:8 final size:8 Alignment explanation
Indices: 7859695--7859718 Score: 41 Period size: 8 Copynumber: 3.0 Consensus size: 8 7859685 TATGCAGCTC 7859695 CCGGTTTT 1 CCGGTTTT 7859703 CCGGTTTT 1 CCGGTTTT * 7859711 CCGTTTTT 1 CCGGTTTT 7859719 TCCCTTTCCG Statistics Matches: 15, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 8 15 1.00 ACGTcount: A:0.00, C:0.25, G:0.21, T:0.54 Consensus pattern (8 bp): CCGGTTTT Left flanking sequence: Indices 7859195 -- 7859694 CCGTTGTGTGGCCACGCGTTGGCTGTTTTGTTTTTTTTTTTTTTACCGACTGCCTGGCTCTGTGG CCACACATGTACCATCCGCCCAACCACGCCCACCGCCTCATTCCCCTCAGCCGCCCAGTTTGCGG TGCGTGGTCAGCTTTATTAGGTTCAAGTTGCATGGGAAACTTTGGGCTATTCCCGCTGTTTTGCG TGTGCCTTTTAATTTATTTATCACAGGCCGCAGAGTCGCAGCCGCAGTTTTGGACCTTCCCACTC TAGTTCTTTTTTATTTTTTTTTTGTGGTTTATGCTGGTTTCCTTTTGGTTTCGGTTTTGGTTTTC ATTATTTTTTTTTTTTTTTTTTTTTTGCGAGTGGTCATAGCGTCATTTGGGCCAAAAACGTGGCC GTGGCAATTTGGCGGCTTTGTTATTTATGCAACAGCCTGCGGCAGTTAACATTCACGTGCGTTTT GGCCACGCCACGTTTATCCTCGCCACCTTCTAACATATGCAGCTC Right flanking sequence: Indices 7859719 -- 7860218 TCCCTTTCCGTTTTCCCGCTTCCTTTTCCCATATTGCATGCCCAAATGTCGCCTTTGGGGGCTAT CCATATGCCACGTGAACTGGCCAAAAAAAAAAAGAAAGAAAAAAAAAAAAAACTGCAAACTAAAT TAACGCGTAAAATACGCTTGCTGTTTTATGGCTCTTTATGACTCTTTATGATCGAAGCTAAGCCT GCGAAGGACTTGTCGCAGATCCTTGAGAATGACGACCTTGAAAGCTTAACTACACTTCGAAAAAC AATAGTGATGGCGATGAGCTTCGCTATTTCGATATACATTGCTCTTAGTGTATTATTACCAAACT TAAGGCCTTGGCATAGTTTAGTTTCACTTTGCTTTTGATAAGTTTGACAGTTGGCCATTTAACTT GGCTTCGAGTTATGGCAAAACGCTCTTCTCACATCGGTTACAATTCTACCACTTACAGCCATTTA GCCCAGATCCTTTTTATTCGCATAAAAAAAAAGAAATAAGTAAAA Found at i:7859888 original size:10 final size:10 Alignment explanation
Indices: 7859873--7859899 Score: 47 Period size: 10 Copynumber: 2.7 Consensus size: 10 7859863 CGCTTGCTGT * 7859873 TTTATGGCTC 1 TTTATGACTC 7859883 TTTATGACTC 1 TTTATGACTC 7859893 TTTATGA 1 TTTATGA 7859900 TCGAAGCTAA Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 10 16 1.00 ACGTcount: A:0.19, C:0.15, G:0.15, T:0.52 Consensus pattern (10 bp): TTTATGACTC Left flanking sequence: Indices 7859373 -- 7859872 ATTCCCGCTGTTTTGCGTGTGCCTTTTAATTTATTTATCACAGGCCGCAGAGTCGCAGCCGCAGT TTTGGACCTTCCCACTCTAGTTCTTTTTTATTTTTTTTTTGTGGTTTATGCTGGTTTCCTTTTGG TTTCGGTTTTGGTTTTCATTATTTTTTTTTTTTTTTTTTTTTTGCGAGTGGTCATAGCGTCATTT GGGCCAAAAACGTGGCCGTGGCAATTTGGCGGCTTTGTTATTTATGCAACAGCCTGCGGCAGTTA ACATTCACGTGCGTTTTGGCCACGCCACGTTTATCCTCGCCACCTTCTAACATATGCAGCTCCCG GTTTTCCGGTTTTCCGTTTTTTCCCTTTCCGTTTTCCCGCTTCCTTTTCCCATATTGCATGCCCA AATGTCGCCTTTGGGGGCTATCCATATGCCACGTGAACTGGCCAAAAAAAAAAAGAAAGAAAAAA AAAAAAAACTGCAAACTAAATTAACGCGTAAAATACGCTTGCTGT Right flanking sequence: Indices 7859900 -- 7860399 TCGAAGCTAAGCCTGCGAAGGACTTGTCGCAGATCCTTGAGAATGACGACCTTGAAAGCTTAACT ACACTTCGAAAAACAATAGTGATGGCGATGAGCTTCGCTATTTCGATATACATTGCTCTTAGTGT ATTATTACCAAACTTAAGGCCTTGGCATAGTTTAGTTTCACTTTGCTTTTGATAAGTTTGACAGT TGGCCATTTAACTTGGCTTCGAGTTATGGCAAAACGCTCTTCTCACATCGGTTACAATTCTACCA CTTACAGCCATTTAGCCCAGATCCTTTTTATTCGCATAAAAAAAAAGAAATAAGTAAAAGTAAAC TAAAGAGCACTCCCCGGAGACATTAACGATTCATAGGGCCCAGTGTGTCGGACATCCTAATGGAT TATCGACTGGAGGGTGTCATTACTCAATGTGTCACGGCGTTTGGGTGAACAGCCTCCCTCTGCCT CCGCCCATTTTCGTCTATATATGTACTGGAACACACCTTTCCCCG Found at i:7860538 original size:8 final size:8 Alignment explanation
Indices: 7860525--7860545 Score: 35 Period size: 8 Copynumber: 2.6 Consensus size: 8 7860515 CAATGTGCGA 7860525 ATTTGGCG 1 ATTTGGCG * 7860533 ATTTGGTG 1 ATTTGGCG 7860541 ATTTG 1 ATTTG 7860546 TTAAAGGGAG Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 12 1.00 ACGTcount: A:0.14, C:0.05, G:0.33, T:0.48 Consensus pattern (8 bp): ATTTGGCG Left flanking sequence: Indices 7860025 -- 7860524 AGTGTATTATTACCAAACTTAAGGCCTTGGCATAGTTTAGTTTCACTTTGCTTTTGATAAGTTTG ACAGTTGGCCATTTAACTTGGCTTCGAGTTATGGCAAAACGCTCTTCTCACATCGGTTACAATTC TACCACTTACAGCCATTTAGCCCAGATCCTTTTTATTCGCATAAAAAAAAAGAAATAAGTAAAAG TAAACTAAAGAGCACTCCCCGGAGACATTAACGATTCATAGGGCCCAGTGTGTCGGACATCCTAA TGGATTATCGACTGGAGGGTGTCATTACTCAATGTGTCACGGCGTTTGGGTGAACAGCCTCCCTC TGCCTCCGCCCATTTTCGTCTATATATGTACTGGAACACACCTTTCCCCGGATCGGTCATCATCA TCATCATCATCACATTGGGAATCATCATCGAAAGGTGGCGCAAAGTGGTTGCCATAAATATGCTT TATGATAAACTAAACGTGCGCTCATTTGTACAAGACAATGTGCGA Right flanking sequence: Indices 7860546 -- 7861045 TTAAAGGGAGAAAGCGAAGAAAATGCAAATTCTTCTACACAAAAAAAAAAATATATTTTTAATAC CAAAATATTTCATATTAACATAGCATTTAAATGTTCGAAACTTTGGGTTTCTTTGTTGCCGTTTT GATGCAAGGATCACAAAAAAAGCTATCATCATCAAGGAGTTTTTTTTTTTTGTGCGTGGAAGTGA AAGGAAGTCCATTAAAATGCCAATAGACATGTGTGTGTATGTGCGCGTGGGTGTGTGTGTGTAGG CAGTACATCCAATAAATCCTCAATAATTTATATTGAGCTGCCACCGCATTTCTGAGGGTTTTGCC ATCGAAAAGGAATGTTTGTGGGTTGTCTAAGCGAAAGCGAAATTTGTTCAAATATTTGTCTCAAT CAAAGAGTAGGCGCGACCATATCGCAAGCTCATGAAAAAGTCGACTAAATGATACTTATTATTCA ACTTGTGCAAGCTATAAAAAGGAAGGCAGCACTTTTCAAAACATT Found at i:7861244 original size:7 final size:7 Alignment explanation
Indices: 7861227--7861252 Score: 45 Period size: 7 Copynumber: 3.9 Consensus size: 7 7861217 TGAGGGCGCG 7861227 GATAA-T 1 GATAAGT 7861233 GATAAGT 1 GATAAGT 7861240 GATAAGT 1 GATAAGT 7861247 GATAAG 1 GATAAG 7861253 AGGAACAGCA Statistics Matches: 19, Mismatches: 0, Indels: 1 0.95 0.00 0.05 Matches are distributed among these distances: 6 5 0.26 7 14 0.74 ACGTcount: A:0.46, C:0.00, G:0.27, T:0.27 Consensus pattern (7 bp): GATAAGT Left flanking sequence: Indices 7860727 -- 7861226 GTGCGTGGAAGTGAAAGGAAGTCCATTAAAATGCCAATAGACATGTGTGTGTATGTGCGCGTGGG TGTGTGTGTGTAGGCAGTACATCCAATAAATCCTCAATAATTTATATTGAGCTGCCACCGCATTT CTGAGGGTTTTGCCATCGAAAAGGAATGTTTGTGGGTTGTCTAAGCGAAAGCGAAATTTGTTCAA ATATTTGTCTCAATCAAAGAGTAGGCGCGACCATATCGCAAGCTCATGAAAAAGTCGACTAAATG ATACTTATTATTCAACTTGTGCAAGCTATAAAAAGGAAGGCAGCACTTTTCAAAACATTATGCTG CTGTAAACATATTTTACAACTGGTCAGGGATGGATTATGGATAATGGATAATGAATAATGGTGCT TTGACGATTGGCGAACTGCTCATGACGAGTTATTGCATAACCCAATGGATCTATATTGTGAGCCA ATGTCCCGGGCAACATGGCAATCGAAGTGGACAGCTGAGGGCGCG Right flanking sequence: Indices 7861253 -- 7861752 AGGAACAGCAAGAACAGCAAACCGACTGGCATCCGCAAATGGAATCCAATAAAGTGTTAAGTGGG GCAGCCAAAAAAAAAAAAGGGGGATGGGTGGGGAAATGATGGAATACAGGGAGAAAGTCCGGGGA AAGCACGAACATTTCATTCCCCAGATGCTTTTGCGTCACTTGAGCGCCAATTTGAATGAGCGAAT GGGAATCGGAATGCGAGTGGATCAGGGAAGGGAATGGGAATGGGAAGGGAAGGGGAAGGGGAACC AGAAAGGAAATGCTCGAAATGCGACAAATAAGAGGGGGGGGGGGGAATGGAGGGGCGATGGTTAA AGCCATGCTAAATCGTCCTCGGGCCAAACCAATTGACGATTTGTGCATATAACATTATTATAATG ACATCATCCCAGAGCGCCTTTGGCAGCCCAACGTCCGAATGCAAAAATTACACTGCCAAAAATGT GAAGTTAAATGTGGCCAATCAAATAAATAAAGAGCGTTTTTTTTT Found at i:7861269 original size:9 final size:9 Alignment explanation
Indices: 7861255--7861272 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 7861245 GTGATAAGAG 7861255 GAACAGCAA 1 GAACAGCAA 7861264 GAACAGCAA 1 GAACAGCAA 7861273 ACCGACTGGC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.56, C:0.22, G:0.22, T:0.00 Consensus pattern (9 bp): GAACAGCAA Left flanking sequence: Indices 7860755 -- 7861254 AAATGCCAATAGACATGTGTGTGTATGTGCGCGTGGGTGTGTGTGTGTAGGCAGTACATCCAATA AATCCTCAATAATTTATATTGAGCTGCCACCGCATTTCTGAGGGTTTTGCCATCGAAAAGGAATG TTTGTGGGTTGTCTAAGCGAAAGCGAAATTTGTTCAAATATTTGTCTCAATCAAAGAGTAGGCGC GACCATATCGCAAGCTCATGAAAAAGTCGACTAAATGATACTTATTATTCAACTTGTGCAAGCTA TAAAAAGGAAGGCAGCACTTTTCAAAACATTATGCTGCTGTAAACATATTTTACAACTGGTCAGG GATGGATTATGGATAATGGATAATGAATAATGGTGCTTTGACGATTGGCGAACTGCTCATGACGA GTTATTGCATAACCCAATGGATCTATATTGTGAGCCAATGTCCCGGGCAACATGGCAATCGAAGT GGACAGCTGAGGGCGCGGATAATGATAAGTGATAAGTGATAAGAG Right flanking sequence: Indices 7861273 -- 7861772 ACCGACTGGCATCCGCAAATGGAATCCAATAAAGTGTTAAGTGGGGCAGCCAAAAAAAAAAAAGG GGGATGGGTGGGGAAATGATGGAATACAGGGAGAAAGTCCGGGGAAAGCACGAACATTTCATTCC CCAGATGCTTTTGCGTCACTTGAGCGCCAATTTGAATGAGCGAATGGGAATCGGAATGCGAGTGG ATCAGGGAAGGGAATGGGAATGGGAAGGGAAGGGGAAGGGGAACCAGAAAGGAAATGCTCGAAAT GCGACAAATAAGAGGGGGGGGGGGGAATGGAGGGGCGATGGTTAAAGCCATGCTAAATCGTCCTC GGGCCAAACCAATTGACGATTTGTGCATATAACATTATTATAATGACATCATCCCAGAGCGCCTT TGGCAGCCCAACGTCCGAATGCAAAAATTACACTGCCAAAAATGTGAAGTTAAATGTGGCCAATC AAATAAATAAAGAGCGTTTTTTTTTTGTGCTGCTTATTTTGTTAA Found at i:7862112 original size:9 final size:9 Alignment explanation
Indices: 7862098--7862115 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 7862088 CCTTCGCCTG 7862098 CAAAAAAAA 1 CAAAAAAAA 7862107 CAAAAAAAA 1 CAAAAAAAA 7862116 AGGGGAAAAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00 Consensus pattern (9 bp): CAAAAAAAA Left flanking sequence: Indices 7861598 -- 7862097 GGGCCAAACCAATTGACGATTTGTGCATATAACATTATTATAATGACATCATCCCAGAGCGCCTT TGGCAGCCCAACGTCCGAATGCAAAAATTACACTGCCAAAAATGTGAAGTTAAATGTGGCCAATC AAATAAATAAAGAGCGTTTTTTTTTTGTGCTGCTTATTTTGTTAAATTTTGCTTTTTCTATTGTG AGGCAATGAAGCATTTCTCATTTCACGCACCAATTTATCGCAGTGTAGTTTTGGAGAAGCACTTC GGTATGTTCGATGGGCGTGCGGAGAATCCACACTGAGAACTGGTGGGTTGGCAAGAAATTGGACA TGCCTTCAAGTGCCGTCCGCATCGCATCGAGTAAATAATAAAGAAAATTCCTGTGCGCCTTGGCA TTTCCGCCAACGCCAACATTGTCATCGCTTCCGTCATCCCATCAGTCCGGAGACACAAAACTATG CGGCGCAGTCCCAAGGATCCGCCGCAGTTTAACTTCCTTCGCCTG Right flanking sequence: Indices 7862116 -- 7862615 AGGGGAAAAACAAAACAAAAATGAAGCCGAATGAGTGGTGCGTCAAAATGGCATTTCAAGTTCAA GCGGATTGGAAAAATCGAAAAACTTTTCGATTGGCTAAGGGACGCAGTCGAGCAAATGCAATAAA CTTCAAGTTTATTAAATTTTATCACACTTATACCGACATCGTCTTATGGACTGGATGTGCGGATA TATGTATTTTCTTGTATATAATGCATATTGGCAATTGTTCGCCGTGTTCGCAAAATAGGCCAAAA GATCGAACAGATAGTGTGTAAATTTCGATTGGCAACCCAATCAATGCCAAATCAAATCAACTGGG CCAGTTCCATCAACTGAATCTACAATGAACGCGCACCAACCCATTCCAAACGAAACGAAAAAGTA ATACAAAAGAGCAGCGATACAAATTGAATTACTTAGGTAGATATGGATATTTGTGAGTATCAGTA TAGTACGGCTATTATGTTGGAAAGGTGGGGTGTATATGGCGAGAC Found at i:7868806 original size:10 final size:10 Alignment explanation
Indices: 7868791--7868811 Score: 35 Period size: 10 Copynumber: 2.1 Consensus size: 10 7868781 TCAATTGATA * 7868791 ATATATGTAC 1 ATATATCTAC 7868801 ATATATCTAC 1 ATATATCTAC 7868811 A 1 A 7868812 GCGAAATTAA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.43, C:0.14, G:0.05, T:0.38 Consensus pattern (10 bp): ATATATCTAC Left flanking sequence: Indices 7868291 -- 7868790 GATCACACTGCAGGAGGCGCCAATTCCCAGTCAGGAGACCACGTACTGGTGTCACGTTCAGCGAC TGGAGGGCAATCTCCGGCGTCGCCATCATATCGTTCAGTTCGAGCCGCTCATCCGAACGCCGGGC ATCGTGCATCACATGGAAGTGTTTCACTGCGAGGCCGGTGAGCACGAGGAGATTCCCCTGTACAA CGGCGACTGTGAACAGTTGCCGCCACGGGCCAAGATCTGCTCAAAAGTGATGGTCCTGTGGGCCA TGGGCGCGGGCACCTTTACCTATCCTCCGGAAGCCGGTCTACCAATCGGCGGACCCGGCTTCAAT CCGTACGTTCGACTGGAGGTACATTTCAATAATCCGGAGAAGCAGTCGGGTGAGTAGAGTAGGGC GAAATGGAAGTGGTTGATTCTAAGAAGATTACACTGAAACGATTTGGGTAAGTGATGAGCAGCAT CGCTTGTGTTTGAGTGGAAAACGTTGGCTTATCGATCAATTGATA Right flanking sequence: Indices 7868812 -- 7869311 GCGAAATTAAAGAAAAATGTGAAACTTACATACCGTTTAACTAGTCGTATACGCAATATTGTTTC CCATATTAATCATTCAATGTCAATTCTCGTTTCAGGCTTGGTGGACAACTCCGGCTTTCGCATCA AGATGTCGAAGACACTGCGTCAGTATGACGCCGCCGTTATGGAACTGGGTCTGGAGTACACCGAC AAAATGGCCATTCCGCCTGGCCAAACCGCTTTCCCGCTGAGCGGCTATTGTGTGGCGGACTGCAC ACGAGCCGCTCTGCCGGCGACGGGCATCATCATCTTTGGCTCTCAGCTGCATACGCATCTGCGTG GCGTTCGCGTCCTAACCCGGCACTTTCGCGGCGAACAGGAGCTGCGCGAGGTGAACCGCGATGAC TACTACTCGAATCACTTCCAGGAGATGCGCACCCTGCACTACAAGCCGCGTGTCCTGCCCGTAAG ATCCTGCATCGCGATCATAGTTATTTAAAAAACATTAATACAATG Found at