TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_X assembled 2004-3-18 md5checksum:d304f6c7f10939bacf40e33958147342 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 22224390 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29 Warning! 8514 characters in sequence are not A, C, G, or T Found at i: i:9336452 original size:8 final size:8 Alignment explanation
Indices: 9336439--9336456 Score: 36 Period size: 8 Copynumber: 2.2 Consensus size: 8 9336429 AATTTCTACT 9336439 TAAGCATC 1 TAAGCATC 9336447 TAAGCATC 1 TAAGCATC 9336455 TA 1 TA 9336457 TATATATGTA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28 Consensus pattern (8 bp): TAAGCATC Left flanking sequence: Indices 9335939 -- 9336438 GCCGAAAATAATTATACCCGAATTATCATTTCCATTAGAAGTATTTGGCCCAACTTCGCGGGCCG CCAACAATTAAAGCCACAGCGAAATGAAATAAAATTAGCATAAGCCATTCACATGACTGGGTTCG AAGCCGCTTCTTTTTTTTTTTTTGTAAACTTTTTTTTTTTTGTTCAGGGGAATAAGAAATAAGAA TAACAACAAGCGTCAAAGCCACGTATCCACTACAGATGCTCAACAACTTTAGCAACATTTCAAGA TTTCTAATTTTTATTTGCCTCGCCGCAGTTGTTGGTGTTGTTTCTAATTAAGTTTGCCGTAGTGC TTGGATTTTTTCTCTCAACTTTTTATATCTGTTTTTTTTTTTTTATTCTTTTTTTTTCTGTTTCA GAAGCCTCGAGACCTGTTTTTATGGAACCTGGGCACCCCCCGCAAAGTGACCAAATGGAGGGCAA AGAGGGAAAAACTGGAATAATTCTGGGCTCGGGGGAATTTCTACT Right flanking sequence: Indices 9336457 -- 9336956 TATATATGTAAAAAAAAAAAAAAAGGTATATATGGGATTCGATTGTATCAACATTATTTGCAAAT TGTGGCTTTTAATAATTAGCAAATAAATTATCGGTATAGAATAGAGTATTCCACGAAAACAATCT GACGGATACTTCACGTGAGTATCTATCTGATCATCATCACACCGAGTGCAGTTGTTTATTAATAA AAAAAAACAAACTTAATTATCTGCTGCCCCTCTGAGAAGTTATATTATTCAAACGGAACTGGCTT TTTAGTAGAAAAAATAAATTATCGTTGACTTGGGGTCATTCGTATTGGTTGACCAAAGTGTTGAA AGCGCAAGTAATTGAGTTCATGCAATTTTTAATTCCTCCAAGCTTTGTCAATTATTTTTTCTTTG CAATATACATTTTTTAAATAAAAGTCTTGTCTGAATTATAAGCTTTATTCCGGCATTTCATGGTC ACAAGCATAAATGGAGAGAATATAAAGACACAATTTGCTGGGCAC Found at i:9338012 original size:8 final size:8 Alignment explanation
Indices: 9337999--9338015 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 9337989 TATTGATCGG 9337999 ATTTCTCT 1 ATTTCTCT 9338007 ATTTCTCT 1 ATTTCTCT 9338015 A 1 A 9338016 GGTGCATTTA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.18, C:0.24, G:0.00, T:0.59 Consensus pattern (8 bp): ATTTCTCT Left flanking sequence: Indices 9337499 -- 9337998 GTAAACTGAAATTTAAGCGATGTGCTGTTGCTGTGCCGTTGATTAACCGATGGTAATCAGCTACG GAAGCGGAAAGCGGCCCAAACTTGATTAGCATTTTTGGTGGACCAAATCATCGCAGGCATTGGTG CAGATATGGCTGCGACAGTGTTGCAATTGTAACTGCAATTAAAATGCAATTGTTCAAGAGCGATT CGACACACCCGTGCTAAACAAAAAAAATTCCACAGCACAATCGAGTTTGAATTGGTTTGAATCGC TGCATTTCTATGCCCAATGACGTTTTACATTTTTTTTTTTATTTTTTCACTTCTGTAATACACTT GAAACAAAAGCAAAAGCGTATTTAGGAATGATAATAAATGTCATATCACGTCAAAAGCATTATGT ACAACTCTCTCTGTGCGCAAACAAATCAATTACACCTTTAACGATGCTAATGTCTAATTAAATCG AATTAATTGGGCCATTTATTCAAAGCGATGCCAATTATTGATCGG Right flanking sequence: Indices 9338016 -- 9338515 GGTGCATTTAGCCAATGCAAACAGGACTAAAAAAAAAAAAAAAGACTTTCATGCAGATTACCTGC GCCTGCCCACCTGTCAATGGCATTTGCATATGGATTTGGGACTTGTGAGCGGCAGCCCCTCAATC GACACAGACCCCCCAAGACCCTCCGATATCCTTCGGTTATACCGAATAGTTCCACATATGTTGGT TGGCATTGCAATTTGTCAACATGACAAATACCAAAAAACTGCAGTCGAGTTGAGTTCCGGACGGA CAAAAGGACAGGTGGAATAGTATGGGGGGGGCGGAGTGGGGATCCAAGTGAGACAGGCAGGCATC AAGTAGCGGCATCGTCTGATTGGCGAACGTTTGCTAAATGTATGCATGAAAAATGCATTAGAGCC GCCGCAGAAACAGAAGAGCAGCACGAGAATACGAGGGGTCAGGGATCGGGAAGCGGGCGAAATCG GTGTATATTGAGGGTATCCGGCTCGCAGGACCAAATACAACAAGT Found at i:9339775 original size:7 final size:7 Alignment explanation
Indices: 9339759--9339777 Score: 31 Period size: 7 Copynumber: 2.7 Consensus size: 7 9339749 TAAATACGGC * 9339759 GGGCGGT 1 GGGTGGT 9339766 GGGTGGT 1 GGGTGGT 9339773 GGGTG 1 GGGTG 9339778 AAATTTTCCG Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.00, C:0.05, G:0.74, T:0.21 Consensus pattern (7 bp): GGGTGGT Left flanking sequence: Indices 9339259 -- 9339758 CTCGTTGAATATTATGGCCACGTCCCTTGTTAAAAAGTCGTTCGTTTCTCCTTCATCTTTCTTAA TCTCTTCCACCTCGCACACATCTCCTCTTCAGATCTGAATTTTCCAGAGACTCCGAAAAGTTCTA AGTTAAATTTAGCCAGGCATTCATCAGTCTCCAGCCTCTGTGCACTGAGAAAATATTGTCGAGCC TTACATTTGGTACCTTTGTGATTCCCATTGTTGTAAAGAATTGTTTCTTTCACACAGCTAACAAA ATATCAACTATATGATTAAACTATTATTTCCAGAGTGTTCTAATTTTAGGCTTGTATATTTAATA TGCATTTCAATCCAAGAACGAACCTACTTTTTGCTTTGTGTACCCCGTCGACGTATCTTTTGTGC TTTGTTTGGGTTTTTGTGATAAGCGGGACCCGCTGAGCTTCGTAAACTGCCGCAAATTTAAACGA GATAAATGCTGCCTAATTGCACACAGAAATGAAACTAAATACGGC Right flanking sequence: Indices 9339778 -- 9340277 AAATTTTCCGGGCGAAAGTCGACGTGTGGGTGGCGACTTTTCAAGCGGGTGGGGCGGTGGATGGT ACATCAAATTATAAACGAAAGTTCTCAAACAATTTAATCAGCGGCAACAAACAACAAAAACATTT CACACACACACACACATACGCACAGTGCGAACGAGAGGGAAGATATCAAAGGAGGACAGCAAGAT GCTGGCTCCCCCACTAAAAAATGCTATAAGATCTGGTTCTAAATGCATTGCCATCGGAAAGGGAC GGCGAAACAAGCAAAGGCAATGATACAGAACGAAAGGGGGAAAATCAGTTAGTTCCTGGCGGCGT CAAAGGGTCGGAAAACCCGGAAGGGGGGTGGGGCCAAAGTGGAAAGCGCAGAAAACGCATTCTAA CAACAAGCTAGTTGATGAGCGTAAGGGGAATCCCACTAAAGTTACGGGAAGCACAAAACTAAGCA TAAAGACAACCACAAGTTAAAAAGAGCCTTTAAGAAGCGACTTGA Found at i:9339899 original size:7 final size:7 Alignment explanation
Indices: 9339887--9339904 Score: 29 Period size: 7 Copynumber: 2.7 Consensus size: 7 9339877 TAATCAGCGG 9339887 CAACAAA 1 CAACAAA 9339894 CAACAAA 1 CAACAAA 9339901 -AACA 1 CAACA 9339905 TTTCACACAC Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 6 4 0.36 7 7 0.64 ACGTcount: A:0.72, C:0.28, G:0.00, T:0.00 Consensus pattern (7 bp): CAACAAA Left flanking sequence: Indices 9339387 -- 9339886 TAAGTTAAATTTAGCCAGGCATTCATCAGTCTCCAGCCTCTGTGCACTGAGAAAATATTGTCGAG CCTTACATTTGGTACCTTTGTGATTCCCATTGTTGTAAAGAATTGTTTCTTTCACACAGCTAACA AAATATCAACTATATGATTAAACTATTATTTCCAGAGTGTTCTAATTTTAGGCTTGTATATTTAA TATGCATTTCAATCCAAGAACGAACCTACTTTTTGCTTTGTGTACCCCGTCGACGTATCTTTTGT GCTTTGTTTGGGTTTTTGTGATAAGCGGGACCCGCTGAGCTTCGTAAACTGCCGCAAATTTAAAC GAGATAAATGCTGCCTAATTGCACACAGAAATGAAACTAAATACGGCGGGCGGTGGGTGGTGGGT GAAATTTTCCGGGCGAAAGTCGACGTGTGGGTGGCGACTTTTCAAGCGGGTGGGGCGGTGGATGG TACATCAAATTATAAACGAAAGTTCTCAAACAATTTAATCAGCGG Right flanking sequence: Indices 9339905 -- 9340404 TTTCACACACACACACACATACGCACAGTGCGAACGAGAGGGAAGATATCAAAGGAGGACAGCAA GATGCTGGCTCCCCCACTAAAAAATGCTATAAGATCTGGTTCTAAATGCATTGCCATCGGAAAGG GACGGCGAAACAAGCAAAGGCAATGATACAGAACGAAAGGGGGAAAATCAGTTAGTTCCTGGCGG CGTCAAAGGGTCGGAAAACCCGGAAGGGGGGTGGGGCCAAAGTGGAAAGCGCAGAAAACGCATTC TAACAACAAGCTAGTTGATGAGCGTAAGGGGAATCCCACTAAAGTTACGGGAAGCACAAAACTAA GCATAAAGACAACCACAAGTTAAAAAGAGCCTTTAAGAAGCGACTTGAGGATACCTTTAAAAGAT GTTAAAGGATTTCTAAAGGATTTAAAGGATACGCATAACCAACAGCTTTAAAATCTACCCATTAT AAATGGCTACTGGAAATCATTCGACAGCTGTTACTAAAATCTTGT Found at i:9340863 original size:7 final size:7 Alignment explanation
Indices: 9340851--9340864 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 9340841 AAGAAAATTG 9340851 TTTTTCT 1 TTTTTCT 9340858 TTTTTCT 1 TTTTTCT 9340865 GATTTTCTGG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86 Consensus pattern (7 bp): TTTTTCT Left flanking sequence: Indices 9340351 -- 9340850 ACCCATTATAAATGGCTACTGGAAATCATTCGACAGCTGTTACTAAAATCTTGTATTGGTGTGAA AAAATATTTACTGATTAGTATTCTGTACTCATTAATATTTCGCCTTGACCAGTTGCATGTGGAAA ATTCGAGTTGGCTGGCTATAAAAAGAGTTTTTCTTAAAAAGCACAGTGCTTATATATTCGGTAGC TCAAAAGAATGCTGCATACCAAAACTGGCTAATTGAATACGTTCCGAGCCCGAGTTACAGATGGT ACAGAAAGTACCAGAGAGTGCCAGTTAGTGCTATTGGATGGGGGGGAGGGGCGGTCGTGTGTGGG GGATTGGGACAACTTAATTTACCGCTCGACCGGCAAGAGACAGCTTCTTCTTTTTCTGGTTCACA TGTCTTCGTTTGTCTAAAAAAAAAAATTTCAAACGATTTTCTTCGGTGGTTTTCCACATTTTTGT GTGTGCAACGTAACACGTTTTCCAATTAAAATTACAAGAAAATTG Right flanking sequence: Indices 9340865 -- 9341364 GATTTTCTGGTTGTTATTGTTTTTGCTTACCTGTCACTGGCAAAAAGAAGAGCGTAATCCAGACA GAGAGCGAGAGAACGAGCGTGAGCGAGAGAGCAGCATCGTGCGAGAGAGAGAGCAAAAATCCTTG TGCTGGCACTTTTCTTTACAAATTTTCTTAATATATCCTTTTGTTGTTGCTTTCTTCTTGTTGTT GTTGGTGGCAGGCCAATGCAACAGGTAAAATAGAGAAAATATGGAAAAAAAACAGAACCAAAACA GAAACACCGAAAACGAAACAGGCAAAAGGGCAAACACAAAAACAAAAAAAATAAAGAAAACAAAA CACAAACTTTGTCAGCACTTGAAAAAAAAATCGTTTTCGTTTCTAATTTTCTCTTTGTTGAACGC GCGCCATTTTTCTTCTTGCCTTTCTTCGAGAAGGTTTTTTCTTAAATAGACTCTTTTGTAATTAT TTAAATTAAATTGCTGTTGTTTTTTTTTTTATTTTGCTGGCGAGA Found at i:9342089 original size:8 final size:8 Alignment explanation
Indices: 9342076--9342091 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 9342066 GAAATGTGAT 9342076 TTAAAATA 1 TTAAAATA 9342084 TTAAAATA 1 TTAAAATA 9342092 AAAATGAAAT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38 Consensus pattern (8 bp): TTAAAATA Left flanking sequence: Indices 9341576 -- 9342075 GAGAGAGCTGAATTTCAGGTGTGGCAACCGGCAAAATCACAAAAAAAATCTTATTTTATCCAAGT ACACAAGAGACAGAGCGAACGATGGAACGACACGGGGCGAAACATCATTATGACCTGTCCAGAAC TTAATGAGAACAGAGTTTTACATATGAAGACTACTTGTTTCTGGTTTTTGCATATTGGTTTTCGG CCTATATATATATATGTAGCTTAGAGATATACTATGTATGCAAGGCAGAGCCTAAGAATATAACT CCATCAATCGGAATTGAAATAACTAATTAGAAGAATCAGAAAGCTAACAGAAGCACTTTTATCTA TTCAAAACGAAAACGTAGTCATAATATCGTTGGAGTTTCATACCTTTTTACTACCAAATCGTTTG ATTGTTAAATGGAACGCAATTTATTTTATTGTCTAATGTAAAAGATAAGTTATCAACAAATTACA TTGATGGATAATCTTTGAAGTAACACGTGTCACAAGAAATGTGAT Right flanking sequence: Indices 9342092 -- 9342591 AAAATGAAATGAAATGACTTGAAACATTTAACATATATGCAGGTTCCTTTAATCACCCCACTACA GAAACTGGAAATTTTTGAATAATCCCAATAAAATTGATCTGTGAAAAGATCTCTTGTGGTTTGTA GATTCGTGGTAGATTTGTTATAGATTTGTAATAGTTTTAGGCGCATGGCATGGATCGGATTCTTG GCTCTGTTTCTTCTCTTCTTATCTCTCTCACTGGCTCTCTGTTGAAAATCGGGTCGCTGCTTAGT TATTCCGCACAGGTGTGAGTGTGTCTGTAGGTGTGTGCGTGATACCTGTTTGTCCGCACACACAC ACACACATACGTACACAAACAGAAGAAACAGTCATCATCATCGTCTAAGCCAAGTTGCCTCTTTT CACCTTTCCTTTGGCCATTCAATTCCGCTCTCGCTCTCCCTCTCGTCCCCTCTCTTTCGCGCCCG CCTTCATCGGGCGGGAGTGGGAGGGAGAGGGCTAATGTCGCAAGT Found at i:9343134 original size:7 final size:7 Alignment explanation
Indices: 9343118--9343134 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 9343108 AAATACCTAT * 9343118 ATTTATG 1 ATTCATG 9343125 ATTCATG 1 ATTCATG 9343132 ATT 1 ATT 9343135 TAAAAGTGAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.29, C:0.06, G:0.12, T:0.53 Consensus pattern (7 bp): ATTCATG Left flanking sequence: Indices 9342618 -- 9343117 CTGCCTTTTGAGCTCGCTTCCTAATCCATTAACATTTCTCTATCCCTCTCTCCCTTTCTCCTACT CTCTTTCTCGCTCTGTCTCTTTAGCCCTGTCTTCTTCCTCTTCTTCGCCTTCTATGGGCTCGGAT AATTCTTCTTCTATCTTCACCATTAAATGATGACGACGCACTCGCAAGAGAAGAAAAACCCAATA AAAAAAAAAAATAATAAATAAGTCCGACTTCAAAGACTTTTATTAAAATTCAATCAATCAATCGC AAAAATGACAGTTCGATCTTCGCAATGATGAATGGATGGTTTTGAATCTAAAATCTTTGCCTTAT CACCCACACTCTCATAATTATTTATCTATTTAAATATGCCATCGTTCAAAAATTTCCATAAATAT ACATTTTATTATTCCGTTTTTAAATTTTTTTTATTTTACAAAAGTACGTACGTATATACGATTCT GTATTATCGTATTACCCTATATAAAATAGTCACATAAATACCTAT Right flanking sequence: Indices 9343135 -- 9343634 TAAAAGTGAATTAAAACACGTTTTAGCAAAATGAAATCATCTTCAAGCAAGATCATACCGTGATT TTGTATACTTCTGAAGAAGAGATCTGATTAAAACGTCAGTGATAAAAGGGCTTATTCTAGACGCC GAAAACCCATCAAAATTGATGACCAATGTTGGTGACAGATAATTTCTTTGTGCGACGTTGGCCAT ATAAATAATGTGTGTATTTTTTATTTATTTACTTTTTTTTTGCCACGCTCAACGATCAGCAGCGA CAACAATTTAGAAAATTAGTTGCACACTCAACGAAACTCGTTCCATTGGCTTTCTAACCGGCAAT GAGGCAAGCAGATCAGCGGTACAGTTGGCGGGGCGGCTAAGGGGGCTTAATTTTTGTAAGCGGCC GGGGGGGGGGGGGTGTGTTGGTGTTTCGATGGGGGCTTACAAGGGGGTGGCGAGTGGGCCAACTC TCCCATTACATCTGCATATGTGGCATGCAATTGGATCTGCCTGGC Found at i:9343688 original size:7 final size:7 Alignment explanation
Indices: 9343678--9343691 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 9343668 TGTGTGGAGT 9343678 AAGCGAA 1 AAGCGAA 9343685 AAGCGAA 1 AAGCGAA 9343692 GGAAAAAACC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.14, G:0.29, T:0.00 Consensus pattern (7 bp): AAGCGAA Left flanking sequence: Indices 9343178 -- 9343677 CAAGCAAGATCATACCGTGATTTTGTATACTTCTGAAGAAGAGATCTGATTAAAACGTCAGTGAT AAAAGGGCTTATTCTAGACGCCGAAAACCCATCAAAATTGATGACCAATGTTGGTGACAGATAAT TTCTTTGTGCGACGTTGGCCATATAAATAATGTGTGTATTTTTTATTTATTTACTTTTTTTTTGC CACGCTCAACGATCAGCAGCGACAACAATTTAGAAAATTAGTTGCACACTCAACGAAACTCGTTC CATTGGCTTTCTAACCGGCAATGAGGCAAGCAGATCAGCGGTACAGTTGGCGGGGCGGCTAAGGG GGCTTAATTTTTGTAAGCGGCCGGGGGGGGGGGGGTGTGTTGGTGTTTCGATGGGGGCTTACAAG GGGGTGGCGAGTGGGCCAACTCTCCCATTACATCTGCATATGTGGCATGCAATTGGATCTGCCTG GCATATTCCAGATTGCCATTCAATTCGATTTGTGTTGTGTGGAGT Right flanking sequence: Indices 9343692 -- 9344191 GGAAAAAACCGAGAGCCGACATGGTGAATTCTCGAGCGGGGTAACCAGTTAAAAATGGGAGCTAG AGCTGGCCTCCAGTTACTGGCGGGGGGGGCGATAACTGGCGTGGAATATCTTCGAAATTGCTCGA TGTCTCGTATTCATATGCATTAACAACCGCTGCTTGCTAGAACTTGCGAATCTCTCAAGTTCCAG AAACCAACAATTTCATAGATATTATCACACCAGCTGGTTAACTTTTTTAACTGTTCCTATGTTAA ATTACTAATCTATGTCAATTTGAAACCGTATTTGGGTATATTTAATATGCTGAACTGAAGACACT TCGTGAAATCTTTGAAAACTATTGTTTACTCTCAAGTTTACAGTTTTCAATGAAGTTATTATGCG TGTTTGAACTTGAACTATCATGCTGTCACTTCCGATTTCGTCAATTGTTTTCGTTACCAATTCAT TTTTTTTTTTTTTTTTCGTTGGCAACACCTCTGGCCAATTTGCTC Found at i:9344464 original size:7 final size:7 Alignment explanation
Indices: 9344452--9344466 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 9344442 CGGCAATAAA 9344452 AGGGGGG 1 AGGGGGG 9344459 AGGGGGG 1 AGGGGGG 9344466 A 1 A 9344467 CCACATTTTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.20, C:0.00, G:0.80, T:0.00 Consensus pattern (7 bp): AGGGGGG Left flanking sequence: Indices 9343952 -- 9344451 ATTACTAATCTATGTCAATTTGAAACCGTATTTGGGTATATTTAATATGCTGAACTGAAGACACT TCGTGAAATCTTTGAAAACTATTGTTTACTCTCAAGTTTACAGTTTTCAATGAAGTTATTATGCG TGTTTGAACTTGAACTATCATGCTGTCACTTCCGATTTCGTCAATTGTTTTCGTTACCAATTCAT TTTTTTTTTTTTTTTTCGTTGGCAACACCTCTGGCCAATTTGCTCGCCTGGACTTTTCCAAGCCA GTCAAATTTGCACTCGAAGTGGAAAACTTTCGACTGTGAGTGTTTCGGTCGGTTGTTGTGGCAAA TATATAAATTTGTGAAATTGTCAGTGCCACAAGCAGAGATGATTTACCGCCCCGGGGGCTATGCC AGCGACTCATTTATCAAGCAAAAAATAAAGAAACCCGAAAATGAAGAGAGTTCTAAGTTGCGACT GGGAAACTTTCACCGGGTGTCGTTTCAACGCGGTGCGGCAATAAA Right flanking sequence: Indices 9344467 -- 9344966 CCACATTTTTTTTTGCAACTCTCGCACTTGAGAATCTCGGCCGGGGAATGGGGGGAAATGCTAGC AAATCATATTTTTGGTGAGGGCGGGATTGGCGGTTGGGGGTGTGGGATTTAGTTGGTCTCAAAGT CTCTGGGCTTTATCCTGGCCAAGCCGAGTCATAAACAAATACGGTTTGCTGCTGTTTTGTTTACA TTCGCAGTGTTTGGTGCCCACCGACCGACGTCTTTTGGCCAGGGGTCTTTTGGTCTCTTGGCCAG ACTGGTTTTTCTCCGGCCAAAAAAGGAAGTTGCTCGTAAAGTGGCGAAAGCCGCCAACTGACTGA CCCAACAACAAAGTGTGCAAAATAAAAATTGCAAGAAGAAAAATCGTTAAATAAAATAATAAAAG CGCTTTCTTTCTGTCTGCCCCTTTTGTTTTTTCTTTGTGTGTGTGTTGTGTGTTTGTTTTCTTTC TATAAATTTTTGCGGTCTGCGTTTCTTCGATTCAACTATTTTCCA Found at i:9344722 original size:8 final size:8 Alignment explanation
Indices: 9344705--9344722 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 9344695 TTTGGCCAGG * 9344705 GGTCTTTT 1 GGTCTCTT 9344713 GGTCTCTT 1 GGTCTCTT 9344721 GG 1 GG 9344723 CCAGACTGGT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.00, C:0.17, G:0.33, T:0.50 Consensus pattern (8 bp): GGTCTCTT Left flanking sequence: Indices 9344205 -- 9344704 CAAGCCAGTCAAATTTGCACTCGAAGTGGAAAACTTTCGACTGTGAGTGTTTCGGTCGGTTGTTG TGGCAAATATATAAATTTGTGAAATTGTCAGTGCCACAAGCAGAGATGATTTACCGCCCCGGGGG CTATGCCAGCGACTCATTTATCAAGCAAAAAATAAAGAAACCCGAAAATGAAGAGAGTTCTAAGT TGCGACTGGGAAACTTTCACCGGGTGTCGTTTCAACGCGGTGCGGCAATAAAAGGGGGGAGGGGG GACCACATTTTTTTTTGCAACTCTCGCACTTGAGAATCTCGGCCGGGGAATGGGGGGAAATGCTA GCAAATCATATTTTTGGTGAGGGCGGGATTGGCGGTTGGGGGTGTGGGATTTAGTTGGTCTCAAA GTCTCTGGGCTTTATCCTGGCCAAGCCGAGTCATAAACAAATACGGTTTGCTGCTGTTTTGTTTA CATTCGCAGTGTTTGGTGCCCACCGACCGACGTCTTTTGGCCAGG Right flanking sequence: Indices 9344723 -- 9345222 CCAGACTGGTTTTTCTCCGGCCAAAAAAGGAAGTTGCTCGTAAAGTGGCGAAAGCCGCCAACTGA CTGACCCAACAACAAAGTGTGCAAAATAAAAATTGCAAGAAGAAAAATCGTTAAATAAAATAATA AAAGCGCTTTCTTTCTGTCTGCCCCTTTTGTTTTTTCTTTGTGTGTGTGTTGTGTGTTTGTTTTC TTTCTATAAATTTTTGCGGTCTGCGTTTCTTCGATTCAACTATTTTCCATATTTTTCTATTTGAT ATTTTGGCAATTTTGGCGATTTTCACTGATTGGTTTTTAATTTTTGCATTTTTCGGTTTCTGTTG GTGGCACAGCAAAAAAAAAAAAAAGGGAAGAAGATCGAAATATTTACCGCCGCACTCACTCGAAA AAAAAACTCGTAACACTCAATTGGAATTTAATCGGCAGGTTGGCCTTTCTTTCTTTCTTTCTATC TTTCAGTTTACTGTTGTTGTCGGCTCCGATATTCTTGTCACTCTG Found at i:9344906 original size:7 final size:7 Alignment explanation
Indices: 9344892--9344910 Score: 31 Period size: 7 Copynumber: 2.9 Consensus size: 7 9344882 GTTTTTTCTT 9344892 TGTG-TG 1 TGTGTTG 9344898 TGTGTTG 1 TGTGTTG 9344905 TGTGTT 1 TGTGTT 9344911 TGTTTTCTTT Statistics Matches: 12, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 6 4 0.33 7 8 0.67 ACGTcount: A:0.00, C:0.00, G:0.42, T:0.58 Consensus pattern (7 bp): TGTGTTG Left flanking sequence: Indices 9344392 -- 9344891 TTCTAAGTTGCGACTGGGAAACTTTCACCGGGTGTCGTTTCAACGCGGTGCGGCAATAAAAGGGG GGAGGGGGGACCACATTTTTTTTTGCAACTCTCGCACTTGAGAATCTCGGCCGGGGAATGGGGGG AAATGCTAGCAAATCATATTTTTGGTGAGGGCGGGATTGGCGGTTGGGGGTGTGGGATTTAGTTG GTCTCAAAGTCTCTGGGCTTTATCCTGGCCAAGCCGAGTCATAAACAAATACGGTTTGCTGCTGT TTTGTTTACATTCGCAGTGTTTGGTGCCCACCGACCGACGTCTTTTGGCCAGGGGTCTTTTGGTC TCTTGGCCAGACTGGTTTTTCTCCGGCCAAAAAAGGAAGTTGCTCGTAAAGTGGCGAAAGCCGCC AACTGACTGACCCAACAACAAAGTGTGCAAAATAAAAATTGCAAGAAGAAAAATCGTTAAATAAA ATAATAAAAGCGCTTTCTTTCTGTCTGCCCCTTTTGTTTTTTCTT Right flanking sequence: Indices 9344911 -- 9345410 TGTTTTCTTTCTATAAATTTTTGCGGTCTGCGTTTCTTCGATTCAACTATTTTCCATATTTTTCT ATTTGATATTTTGGCAATTTTGGCGATTTTCACTGATTGGTTTTTAATTTTTGCATTTTTCGGTT TCTGTTGGTGGCACAGCAAAAAAAAAAAAAAGGGAAGAAGATCGAAATATTTACCGCCGCACTCA CTCGAAAAAAAAACTCGTAACACTCAATTGGAATTTAATCGGCAGGTTGGCCTTTCTTTCTTTCT TTCTATCTTTCAGTTTACTGTTGTTGTCGGCTCCGATATTCTTGTCACTCTGTTCTGGCTGCCCA CACGCTGGACGTATCTGTTGTGGGCCTGGGATTCGGGTTCGGATCAGAGTCACTATCGCACTGTC ACTACAGTTGGTTACTTATTAGCCGCGCTGGCTGACCGTTCACGACGACGCTCCGCGAGCGACTG ACCAGCGGATGCTAGCGCAGCCCACTCGCCGCCCAACCAAAACCG Found at i:9344997 original size:9 final size:9 Alignment explanation
Indices: 9344983--9345005 Score: 39 Period size: 9 Copynumber: 2.6 Consensus size: 9 9344973 TCTATTTGAT 9344983 ATTTTGGCA 1 ATTTTGGCA * 9344992 ATTTTGGCG 1 ATTTTGGCA 9345001 ATTTT 1 ATTTT 9345006 CACTGATTGG Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 9 13 1.00 ACGTcount: A:0.17, C:0.09, G:0.22, T:0.52 Consensus pattern (9 bp): ATTTTGGCA Left flanking sequence: Indices 9344483 -- 9344982 AACTCTCGCACTTGAGAATCTCGGCCGGGGAATGGGGGGAAATGCTAGCAAATCATATTTTTGGT GAGGGCGGGATTGGCGGTTGGGGGTGTGGGATTTAGTTGGTCTCAAAGTCTCTGGGCTTTATCCT GGCCAAGCCGAGTCATAAACAAATACGGTTTGCTGCTGTTTTGTTTACATTCGCAGTGTTTGGTG CCCACCGACCGACGTCTTTTGGCCAGGGGTCTTTTGGTCTCTTGGCCAGACTGGTTTTTCTCCGG CCAAAAAAGGAAGTTGCTCGTAAAGTGGCGAAAGCCGCCAACTGACTGACCCAACAACAAAGTGT GCAAAATAAAAATTGCAAGAAGAAAAATCGTTAAATAAAATAATAAAAGCGCTTTCTTTCTGTCT GCCCCTTTTGTTTTTTCTTTGTGTGTGTGTTGTGTGTTTGTTTTCTTTCTATAAATTTTTGCGGT CTGCGTTTCTTCGATTCAACTATTTTCCATATTTTTCTATTTGAT Right flanking sequence: Indices 9345006 -- 9345505 CACTGATTGGTTTTTAATTTTTGCATTTTTCGGTTTCTGTTGGTGGCACAGCAAAAAAAAAAAAA AGGGAAGAAGATCGAAATATTTACCGCCGCACTCACTCGAAAAAAAAACTCGTAACACTCAATTG GAATTTAATCGGCAGGTTGGCCTTTCTTTCTTTCTTTCTATCTTTCAGTTTACTGTTGTTGTCGG CTCCGATATTCTTGTCACTCTGTTCTGGCTGCCCACACGCTGGACGTATCTGTTGTGGGCCTGGG ATTCGGGTTCGGATCAGAGTCACTATCGCACTGTCACTACAGTTGGTTACTTATTAGCCGCGCTG GCTGACCGTTCACGACGACGCTCCGCGAGCGACTGACCAGCGGATGCTAGCGCAGCCCACTCGCC GCCCAACCAAAACCGAAGGCATCGAACCTTCGAACCATCGAACCATCGAACATGTTGCGTTGCAG CCGCTACTCACAGGCAGTGCGACTTCAAACAGAGGCGCCGCTTTC Found at i:9345430 original size:8 final size:8 Alignment explanation
Indices: 9345415--9345446 Score: 57 Period size: 8 Copynumber: 4.0 Consensus size: 8 9345405 AAACCGAAGG 9345415 CATCGAAC 1 CATCGAAC * 9345423 CTTCGAAC 1 CATCGAAC 9345431 CATCGAAC 1 CATCGAAC 9345439 CATCGAAC 1 CATCGAAC 9345447 ATGTTGCGTT Statistics Matches: 22, Mismatches: 2, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 22 1.00 ACGTcount: A:0.34, C:0.38, G:0.12, T:0.16 Consensus pattern (8 bp): CATCGAAC Left flanking sequence: Indices 9344915 -- 9345414 TTCTTTCTATAAATTTTTGCGGTCTGCGTTTCTTCGATTCAACTATTTTCCATATTTTTCTATTT GATATTTTGGCAATTTTGGCGATTTTCACTGATTGGTTTTTAATTTTTGCATTTTTCGGTTTCTG TTGGTGGCACAGCAAAAAAAAAAAAAAGGGAAGAAGATCGAAATATTTACCGCCGCACTCACTCG AAAAAAAAACTCGTAACACTCAATTGGAATTTAATCGGCAGGTTGGCCTTTCTTTCTTTCTTTCT ATCTTTCAGTTTACTGTTGTTGTCGGCTCCGATATTCTTGTCACTCTGTTCTGGCTGCCCACACG CTGGACGTATCTGTTGTGGGCCTGGGATTCGGGTTCGGATCAGAGTCACTATCGCACTGTCACTA CAGTTGGTTACTTATTAGCCGCGCTGGCTGACCGTTCACGACGACGCTCCGCGAGCGACTGACCA GCGGATGCTAGCGCAGCCCACTCGCCGCCCAACCAAAACCGAAGG Right flanking sequence: Indices 9345447 -- 9345946 ATGTTGCGTTGCAGCCGCTACTCACAGGCAGTGCGACTTCAAACAGAGGCGCCGCTTTCGAGAGC GAAAGAATTGCATTGGTATGCTCATGACTGCCCAAGGAGCTTGCTTCATCATCAAACCAATTCAT TATTATTATTTAGTTCTTATTATTGAGATTATTGTACATACTTAATAGCAAGTAATAGTTCTACT AAAATGCTAGCTTCATTTTATTTGAGAACTCCGCAGCTTCGGAGTGCACATTTCTTTGTTCTCTG CTCTGCGTTTAAGTTCTAATACTATTTAGTTACGCTGCAATTCCTAATAGCCCCCATCTACACCT CTGATGCAACATCGATTCCATGGCAAGGCTATGTTCGAGCGTGCAACATGCAGCATGTTGTGTTT TCATTCGAACAATTGTTGCTGCCACAGTGCGTGTTGGTGGTTCTAATTGACAGTTTTCCAGAACA ACTTGTTGAGCTTATTGTTGTCTTAATGGGGTGCTTATCTACACC Found at i:9346338 original size:7 final size:7 Alignment explanation
Indices: 9346324--9346340 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 9346314 AATTGCTGCT * 9346324 TGCCACG 1 TGCAACG 9346331 TGCAACG 1 TGCAACG 9346338 TGC 1 TGC 9346341 TCGATGCTGG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.18, C:0.35, G:0.29, T:0.18 Consensus pattern (7 bp): TGCAACG Left flanking sequence: Indices 9345824 -- 9346323 GCATGTTGTGTTTTCATTCGAACAATTGTTGCTGCCACAGTGCGTGTTGGTGGTTCTAATTGACA GTTTTCCAGAACAACTTGTTGAGCTTATTGTTGTCTTAATGGGGTGCTTATCTACACCTGCCACC CCCCCCCCTCCCAGACTTTTGCTTGCCTCGCGGATTATTGGAGGACAATTCCACCCCCCCCCCCC CCCACGTCACACTCTTACACTCTCTCTATCTCACTCTCTGTCCGGGTAAATTGACGATTTGAATA TTTACATAAACGATTCTGATTACAATTGAATTTATTATTTAGAGCAGCTACTTAAGCCGCTAAGT CGTTGGGTACATAGGACATACATACATACATACATACATGCATATGTGTATTCATTTGTCGGCTG TCGCTTGACAAATGATACCTTTTCATGGAACTTTTATTTGTTTATTTTGCTTTCTGGAAGGCACA ATCTGCGGCACGCCGAGAATATTGAGTAAACACACAATTGCTGCT Right flanking sequence: Indices 9346341 -- 9346840 TCGATGCTGGCAGCGAACGCGGTTCGAGTTGCAAGCCCCTTCAACAGGTTGCCAGGTTGCTCTAC GAAAATAATGTAAGCTCCTTTACAAGTCCGTACGAAAATTAATTCAATACTCGGCTAAAAATAAA CGCACTTGTTCTCAAGTACAAGCTTACACTCACACACATATGAAACGGAACCTAAGTAAATCCCA TTGTTTTGGTTTTAGAACTGAGCAGGAGAATTTTGAAGAAGTTCTTCAATATTTACTCCCAAGAA TTCGAGTGTATCCAAACTATTCGAATAGGGCCTTCTTCCGCGAAAAAAATCGCTTTAATTGCAGA GCAAGTCAGTCACCAGCCAAATGAACAGCTGTTTCGGCTCCTAAAAACTTTTGCCTGACCGCCTG CTGGCCGTTCCGCATTCTTGGAAGCGGAATTGAACAATTTGAGATTTTCGAAGGGGAAAAGCTGT TTCGCCTATCAGGTGGCCAAGTAGAAAGATATATACATTTCCAAT Found at i:9346398 original size:8 final size:8 Alignment explanation
Indices: 9346385--9346400 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 9346375 GCCCCTTCAA 9346385 CAGGTTGC 1 CAGGTTGC 9346393 CAGGTTGC 1 CAGGTTGC 9346401 TCTACGAAAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.12, C:0.25, G:0.38, T:0.25 Consensus pattern (8 bp): CAGGTTGC Left flanking sequence: Indices 9345885 -- 9346384 GACAGTTTTCCAGAACAACTTGTTGAGCTTATTGTTGTCTTAATGGGGTGCTTATCTACACCTGC CACCCCCCCCCCTCCCAGACTTTTGCTTGCCTCGCGGATTATTGGAGGACAATTCCACCCCCCCC CCCCCCCACGTCACACTCTTACACTCTCTCTATCTCACTCTCTGTCCGGGTAAATTGACGATTTG AATATTTACATAAACGATTCTGATTACAATTGAATTTATTATTTAGAGCAGCTACTTAAGCCGCT AAGTCGTTGGGTACATAGGACATACATACATACATACATACATGCATATGTGTATTCATTTGTCG GCTGTCGCTTGACAAATGATACCTTTTCATGGAACTTTTATTTGTTTATTTTGCTTTCTGGAAGG CACAATCTGCGGCACGCCGAGAATATTGAGTAAACACACAATTGCTGCTTGCCACGTGCAACGTG CTCGATGCTGGCAGCGAACGCGGTTCGAGTTGCAAGCCCCTTCAA Right flanking sequence: Indices 9346401 -- 9346900 TCTACGAAAATAATGTAAGCTCCTTTACAAGTCCGTACGAAAATTAATTCAATACTCGGCTAAAA ATAAACGCACTTGTTCTCAAGTACAAGCTTACACTCACACACATATGAAACGGAACCTAAGTAAA TCCCATTGTTTTGGTTTTAGAACTGAGCAGGAGAATTTTGAAGAAGTTCTTCAATATTTACTCCC AAGAATTCGAGTGTATCCAAACTATTCGAATAGGGCCTTCTTCCGCGAAAAAAATCGCTTTAATT GCAGAGCAAGTCAGTCACCAGCCAAATGAACAGCTGTTTCGGCTCCTAAAAACTTTTGCCTGACC GCCTGCTGGCCGTTCCGCATTCTTGGAAGCGGAATTGAACAATTTGAGATTTTCGAAGGGGAAAA GCTGTTTCGCCTATCAGGTGGCCAAGTAGAAAGATATATACATTTCCAATCCAGTGCTGCGGAGA CATCACCGAACGCTCTACGAGCTATAGGAAAATTCTCTATTGCGT Found at i:9347769 original size:7 final size:7 Alignment explanation
Indices: 9347757--9347773 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 9347747 AGCTAACACT 9347757 TTTAAGC 1 TTTAAGC 9347764 TTTAAGC 1 TTTAAGC 9347771 TTT 1 TTT 9347774 TGCAGAAAGC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.24, C:0.12, G:0.12, T:0.53 Consensus pattern (7 bp): TTTAAGC Left flanking sequence: Indices 9347257 -- 9347756 CTTAAGCCAATACATCAAAATATGTTTAAATATTATATCAAAAATAATAAAGTTTTTATTTCAAG AAATTCCCCACCAACCATAACATTTCCTAAGTTATTTATTGAATAATCAGAAACCACGTAGATAT TAACTATACGTACTAATCGTGTTGTTAATCTCGAAATTGGTTTAACTATTGTTCCGGATATGTAA CTGGATGCAACGGATATGATATAAGGTAAATTATTTGGGTGAGCCCAAGTGCATGTGAGTAATTG GAAAAGTTTGACACGTTAACACGACACAAGTTGGTTAACTGATGTTATATTTTTTCAACAAGCTA TTTTCCACGTAACCCAGGGGAAAAATAACCTTTGCTTAGCAAAAAAAACGGAAATCCGTTTAAAA ATAAAGCTTAAACGACCACAGCTTTTAGCCAGCATTTCACTCTGGTTTATTGGTTTAAGCCAAAA TAAACCTATAATATCGACTTTTAACAGCTTCAAAAAGCTAACACT Right flanking sequence: Indices 9347774 -- 9348273 TGCAGAAAGCAGTGTTACTGTGACTTGGGAAAGTGACCGTTAAAAGCTTTTCTATTTCCTTCAAC AACTTCTGTTAAGCCAAAAGAGCTTTTCCGAAAAATGTTACACCAATGTTAATGTAAGGAAATCG TTTTCTTTATTTAATCATTGTATTCTTAAGTCTACTGTAAGTAATCGTTTTAATTAGTAATTTTA ATTTCTGTTGTGGATTCCATTCCGCGTCTCCTGCGTTTTTGCTTTCTTACTTTTCTTTTCTTTTT TTTTGTTACTTTTGCTTTAGTTTAGTAATAATATTCATTATAAGATACGAGTAATCTCAAACACA ATAGAGACAGTTACAGAGCGACACACACATTTTAATTATATTATTATTGCTAAGACACAAGAAAT AACGATTTTGAAATAAATGCTAACAAAAAAAAAATTAGAAAGAGTGCCAGCCCGGTTTTTTTTTT CAAACCGTGCCTTTCCAAAATTTCTTCTTTTGTGGTTTGCTTATT Found at i:9348580 original size:7 final size:7 Alignment explanation
Indices: 9348568--9348582 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 9348558 TTCATTAAGT 9348568 ATATTTA 1 ATATTTA 9348575 ATATTTA 1 ATATTTA 9348582 A 1 A 9348583 AACTCTTTGT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53 Consensus pattern (7 bp): ATATTTA Left flanking sequence: Indices 9348068 -- 9348567 TCATTATAAGATACGAGTAATCTCAAACACAATAGAGACAGTTACAGAGCGACACACACATTTTA ATTATATTATTATTGCTAAGACACAAGAAATAACGATTTTGAAATAAATGCTAACAAAAAAAAAA TTAGAAAGAGTGCCAGCCCGGTTTTTTTTTTCAAACCGTGCCTTTCCAAAATTTCTTCTTTTGTG GTTTGCTTATTTTGAATATAAGGATTGTGGTTCACGATTATTTATTTGGCGGGTACAATAGATTT ACAAATGGAGTTTTATGAGATTCTGGAAAACCTTTTGCTAAATACAATAATTTCCCTCGAATTTC TGCAATGGCTGACACAACTTTTCTTACATTTATCTCCGATTTTTGGCAAACATAATGGCGAACTA CGAGTACGACTAGTATTTTTTATTCATTTTCATCTCAGCTTCACCTACAAATTATATGTATAGAA TATAATCTGCAATATATAGGTATATCTGTATATATTTCATTAAGT Right flanking sequence: Indices 9348583 -- 9349082 AACTCTTTGTAACATTTAATAAAGTTAAACATTGATTGCTCTTGCGTTGTGACAATAAGTTACTA TATAATCATATAATCAATCTGTCATTATGTATACATATAGCTCATTTCTATAAATATATCTTTTA CATCCTTGCATTCTCATCATCATTTTTGCCATCATCATCCAAATTCTCCATCATCTCGTGTTGAT TATCCTTGACTATGTTTAATAATAAAAAAATTCTCTAGTTTTGTTTTACACACATCTTTTGTATT TTTCCTTCGTCGTCCAGCGACATTTTGCTCAGGTCAAATTAGAGGAAAGGGAAATTTTTAGTTAC GGGTCTCTTTAATTCTCCACCCATTTCATATTGAAAATTGGGGCATTTTCCTTCATTTTCCTGGA GTGCTAAGAAGACGCAAACTCGTTTCCGGTTCGAATAGAGGAACACAGAGAGTAAATTAAATATT CGAGTATTTTGTTATGTACATTCTAAATATATTTATGACGAGGAC Found at i:9348660 original size:8 final size:8 Alignment explanation
Indices: 9348647--9348663 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 9348637 ATAAGTTACT 9348647 ATATAATC 1 ATATAATC 9348655 ATATAATC 1 ATATAATC 9348663 A 1 A 9348664 ATCTGTCATT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35 Consensus pattern (8 bp): ATATAATC Left flanking sequence: Indices 9348147 -- 9348646 GCTAAGACACAAGAAATAACGATTTTGAAATAAATGCTAACAAAAAAAAAATTAGAAAGAGTGCC AGCCCGGTTTTTTTTTTCAAACCGTGCCTTTCCAAAATTTCTTCTTTTGTGGTTTGCTTATTTTG AATATAAGGATTGTGGTTCACGATTATTTATTTGGCGGGTACAATAGATTTACAAATGGAGTTTT ATGAGATTCTGGAAAACCTTTTGCTAAATACAATAATTTCCCTCGAATTTCTGCAATGGCTGACA CAACTTTTCTTACATTTATCTCCGATTTTTGGCAAACATAATGGCGAACTACGAGTACGACTAGT ATTTTTTATTCATTTTCATCTCAGCTTCACCTACAAATTATATGTATAGAATATAATCTGCAATA TATAGGTATATCTGTATATATTTCATTAAGTATATTTAATATTTAAAACTCTTTGTAACATTTAA TAAAGTTAAACATTGATTGCTCTTGCGTTGTGACAATAAGTTACT Right flanking sequence: Indices 9348664 -- 9349163 ATCTGTCATTATGTATACATATAGCTCATTTCTATAAATATATCTTTTACATCCTTGCATTCTCA TCATCATTTTTGCCATCATCATCCAAATTCTCCATCATCTCGTGTTGATTATCCTTGACTATGTT TAATAATAAAAAAATTCTCTAGTTTTGTTTTACACACATCTTTTGTATTTTTCCTTCGTCGTCCA GCGACATTTTGCTCAGGTCAAATTAGAGGAAAGGGAAATTTTTAGTTACGGGTCTCTTTAATTCT CCACCCATTTCATATTGAAAATTGGGGCATTTTCCTTCATTTTCCTGGAGTGCTAAGAAGACGCA AACTCGTTTCCGGTTCGAATAGAGGAACACAGAGAGTAAATTAAATATTCGAGTATTTTGTTATG TACATTCTAAATATATTTATGACGAGGACATATATCCTATGTTTATGTGTACACTCTATGAGAAA CAACAACATCGAGACTTATATAAAAGAAAACTTCAACGACTTGAG Found at i:9351639 original size:7 final size:7 Alignment explanation
Indices: 9351627--9351647 Score: 42 Period size: 7 Copynumber: 3.0 Consensus size: 7 9351617 GTTGTGGGCG 9351627 TGGCACA 1 TGGCACA 9351634 TGGCACA 1 TGGCACA 9351641 TGGCACA 1 TGGCACA 9351648 GGTGTTAACC Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 14 1.00 ACGTcount: A:0.29, C:0.29, G:0.29, T:0.14 Consensus pattern (7 bp): TGGCACA Left flanking sequence: Indices 9351127 -- 9351626 CAAATACGACAAAAAAAAAAAACGAAAAATGTAAACATAAAACTGGGCGAAACTATAATTTTAGC ACAACTTAGGTTTCACACGAGCACTTCGTATGTCTGCAATTAAAGGACCCCATTTTCACAAGGAT TTTGAATAATTTGTGCCACAAATTATGGCGAATTTCGAAAGAACGTATATAACTGAAAAAATGTA CACAAAACCAAGCGAATTGTGGGTAAAATGAAAGTGAATTGAGACAGAAATTCAGTGAAATACCA CTTACGTTTTGGGTAGTTGTTCTGTTTTTTTTTTTTTTTTTTTTTGACCACTTGGGAATTTTAAT TATTTCGAGGATGGGTATCGAGTGTTGCGCTATCTTTGGTTTCCTGTTGTCCTTTCGTCCTTAAC ACACCAATTAAATATTATTTGCAATTGTCCTTGCATAGGGAGGATGTGTCCATTTTTAAGTCGTA ATTGTGGGCGATGTGTCTTTGGGGAGCGGGCGACAGTTGTGGGCG Right flanking sequence: Indices 9351648 -- 9352147 GGTGTTAACCAAAATTGCTGGCAATCAAAATGGTCACGATGTGTTTTTCTCAGTTGGTTTTTTTT TTTGGTTCTCTTTCACGTTCGTTTTGCTTTATTTGTCCGCCTTTTCGCGTTTTCCGCCCATTCTT TTCATCTTAAATTGGTCTTGTCATCTCGCTCTTTGTTTAACTGCAGTTTTTCATTTTCGAAGTTT TATATTTTCCTGTTCTTTTTTTTTCTGTGTGTATTTCGTTTTTTTATCTTCAGTTTCCACCTACC ATTCTTTGCCATTTTCCATGCGATTTTTTTTTCTTTTTTTTGTTTCATGCGGTTTTTGTGGTTTG TTTGTTTGCTTTATGCGGCAGCCGCGAAAAGCAATTTCCCGGTGGAAAATCGTAGGGGGGCAGAG TGTGAGGGGTGTGTTTTTTTTTTCCTTTGTCGGGTGGAAAGCACGAAATGTTAATAAAGGTCCAG TTGCAGTTCGAGTTGGTTCGGAGTTTCCAGGCATTTGGTTGTTTG Found at i:9351946 original size:9 final size:9 Alignment explanation
Indices: 9351932--9351952 Score: 35 Period size: 9 Copynumber: 2.3 Consensus size: 9 9351922 TCCATGCGAT 9351932 TTTTTTTTC 1 TTTTTTTTC * 9351941 TTTTTTTTG 1 TTTTTTTTC 9351950 TTT 1 TTT 9351953 CATGCGGTTT Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.00, C:0.05, G:0.05, T:0.90 Consensus pattern (9 bp): TTTTTTTTC Left flanking sequence: Indices 9351432 -- 9351931 GACCACTTGGGAATTTTAATTATTTCGAGGATGGGTATCGAGTGTTGCGCTATCTTTGGTTTCCT GTTGTCCTTTCGTCCTTAACACACCAATTAAATATTATTTGCAATTGTCCTTGCATAGGGAGGAT GTGTCCATTTTTAAGTCGTAATTGTGGGCGATGTGTCTTTGGGGAGCGGGCGACAGTTGTGGGCG TGGCACATGGCACATGGCACAGGTGTTAACCAAAATTGCTGGCAATCAAAATGGTCACGATGTGT TTTTCTCAGTTGGTTTTTTTTTTTGGTTCTCTTTCACGTTCGTTTTGCTTTATTTGTCCGCCTTT TCGCGTTTTCCGCCCATTCTTTTCATCTTAAATTGGTCTTGTCATCTCGCTCTTTGTTTAACTGC AGTTTTTCATTTTCGAAGTTTTATATTTTCCTGTTCTTTTTTTTTCTGTGTGTATTTCGTTTTTT TATCTTCAGTTTCCACCTACCATTCTTTGCCATTTTCCATGCGAT Right flanking sequence: Indices 9351953 -- 9352452 CATGCGGTTTTTGTGGTTTGTTTGTTTGCTTTATGCGGCAGCCGCGAAAAGCAATTTCCCGGTGG AAAATCGTAGGGGGGCAGAGTGTGAGGGGTGTGTTTTTTTTTTCCTTTGTCGGGTGGAAAGCACG AAATGTTAATAAAGGTCCAGTTGCAGTTCGAGTTGGTTCGGAGTTTCCAGGCATTTGGTTGTTTG TATTGCCCAGTGTCCAACCGAATTCATCCGTCCATCTGTCGAAGAAATCCCCATCCAACCATCCA GCCATCCATTCATCCATCCATCCTTCTCCACATTCGTCCATTTTTCGTCCTTTTCCCCCCTTGCT ATCGTGCGTGTCCTTCAGCTGCTTATGTCTGCACGGGCACATTGCTATCGGCCTCCTGCAGAACG GGCGCTGTCCAGACGCCGCTTCCGCTGCGCGTCTTCCGCTGCTGGACGATGCCATCCATGATGTC CAGCTGCAAGTTGTGCACGCTGCCGCGGTGATCGGTTAATGGCGG Found at i:9352571 original size:11 final size:10 Alignment explanation
Indices: 9352555--9352575 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 9352545 TTTTCTGAAA 9352555 TTATATTAATT 1 TTATA-TAATT 9352566 TTATATAATT 1 TTATATAATT 9352576 AATAATGTGT Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 10 5 0.50 11 5 0.50 ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62 Consensus pattern (10 bp): TTATATAATT Left flanking sequence: Indices 9352055 -- 9352554 TTTTTTCCTTTGTCGGGTGGAAAGCACGAAATGTTAATAAAGGTCCAGTTGCAGTTCGAGTTGGT TCGGAGTTTCCAGGCATTTGGTTGTTTGTATTGCCCAGTGTCCAACCGAATTCATCCGTCCATCT GTCGAAGAAATCCCCATCCAACCATCCAGCCATCCATTCATCCATCCATCCTTCTCCACATTCGT CCATTTTTCGTCCTTTTCCCCCCTTGCTATCGTGCGTGTCCTTCAGCTGCTTATGTCTGCACGGG CACATTGCTATCGGCCTCCTGCAGAACGGGCGCTGTCCAGACGCCGCTTCCGCTGCGCGTCTTCC GCTGCTGGACGATGCCATCCATGATGTCCAGCTGCAAGTTGTGCACGCTGCCGCGGTGATCGGTT AATGGCGGTCCGGCGATGACGCTGCCACGGCGACTGCCACTGCAAAAAAATTAAATTTAATTCTT AAAAATCATTTAAAAAAATTTATTTATTGTAGTATTTTTCTGAAA Right flanking sequence: Indices 9352576 -- 9353075 AATAATGTGTAATATTAACTTGCTTTAAAGGTTTTTTCCTTTGTGTATTTTTTATTTATATCCCT TCTGGTCTAATCCTAATTTACCTTTTTTTGTTTAGGTATTGCAGATATTGCAGAAAGCGTAACAA TTTGGCATTTTAGCTGAGGCTGTTACAATTTTTATTTTACTACCATGACTATTTCCACATTCACA TTCATGTGAACCGATAGTAAGTGGTTGATGGTTGTGCGGTTATCACTTTAGCATAAATTATACGC CCCGTTGGCGCTCCTTCCCGTGCACCACACCCCTTGGAAATTCCACGACCCGAGGCCGCTCATCT ACAGCCGCCAACTTGGAATCGTAAAGTGCGTTGGTCGTTTAATGGACACGCGACACGGGAAAAAT TGTGGCACGGTGGAGGTGGGGGATTTTAGGAGTTTGGCTAGCCAAGATGGGTGGAATGCAATTTA AATGACCACCACACCAAACTTGCACAAAGTCAGGGGCAAAAGCAA Found at i:9352691 original size:9 final size:9 Alignment explanation
Indices: 9352677--9352694 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 9352667 TTTGTTTAGG 9352677 TATTGCAGA 1 TATTGCAGA 9352686 TATTGCAGA 1 TATTGCAGA 9352695 AAGCGTAACA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.33, C:0.11, G:0.22, T:0.33 Consensus pattern (9 bp): TATTGCAGA Left flanking sequence: Indices 9352177 -- 9352676 GTCCATCTGTCGAAGAAATCCCCATCCAACCATCCAGCCATCCATTCATCCATCCATCCTTCTCC ACATTCGTCCATTTTTCGTCCTTTTCCCCCCTTGCTATCGTGCGTGTCCTTCAGCTGCTTATGTC TGCACGGGCACATTGCTATCGGCCTCCTGCAGAACGGGCGCTGTCCAGACGCCGCTTCCGCTGCG CGTCTTCCGCTGCTGGACGATGCCATCCATGATGTCCAGCTGCAAGTTGTGCACGCTGCCGCGGT GATCGGTTAATGGCGGTCCGGCGATGACGCTGCCACGGCGACTGCCACTGCAAAAAAATTAAATT TAATTCTTAAAAATCATTTAAAAAAATTTATTTATTGTAGTATTTTTCTGAAATTATATTAATTT TATATAATTAATAATGTGTAATATTAACTTGCTTTAAAGGTTTTTTCCTTTGTGTATTTTTTATT TATATCCCTTCTGGTCTAATCCTAATTTACCTTTTTTTGTTTAGG Right flanking sequence: Indices 9352695 -- 9353194 AAGCGTAACAATTTGGCATTTTAGCTGAGGCTGTTACAATTTTTATTTTACTACCATGACTATTT CCACATTCACATTCATGTGAACCGATAGTAAGTGGTTGATGGTTGTGCGGTTATCACTTTAGCAT AAATTATACGCCCCGTTGGCGCTCCTTCCCGTGCACCACACCCCTTGGAAATTCCACGACCCGAG GCCGCTCATCTACAGCCGCCAACTTGGAATCGTAAAGTGCGTTGGTCGTTTAATGGACACGCGAC ACGGGAAAAATTGTGGCACGGTGGAGGTGGGGGATTTTAGGAGTTTGGCTAGCCAAGATGGGTGG AATGCAATTTAAATGACCACCACACCAAACTTGCACAAAGTCAGGGGCAAAAGCAAAGTGAATGT GGTCGAAATGGCAGTAGATTTTGTGCCAGCCAAGTCGGTTAGAAGTTGCTCTGAGTTATAGAAAA AAGATTTAAAATTAAACCTATGCAATAAAATCGATCTGTGATAAA Found at i:9356277 original size:7 final size:7 Alignment explanation
Indices: 9356265--9356282 Score: 36 Period size: 7 Copynumber: 2.6 Consensus size: 7 9356255 GACTTAAAAG 9356265 AAATGGC 1 AAATGGC 9356272 AAATGGC 1 AAATGGC 9356279 AAAT 1 AAAT 9356283 AAAATGAAAA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.50, C:0.11, G:0.22, T:0.17 Consensus pattern (7 bp): AAATGGC Left flanking sequence: Indices 9355765 -- 9356264 CCATCCTCGGCGGTGTGCGATTCCTCCACCACGATCAGCGGCTCCTGGGTGCTCAAGTTGAAGAC GGGCGTGAACGAGGAGCGACGCATTTTTTCTGGCTGCTTCAATTACTTTGCTTACTCTGCAATTG TTCAAAATGAAATAGATATTATTTGACTATTGTCAATGTCCATTGACATTGTTATCACAGTTCCC AATGAAATTCCCATTTGCATGACCTACTCGATTGTTTTTGTTCGTGCAGCTTAAAAGCAAAAAAG TGCTGTTGACATTTTGCGGTCACTGTGCACAGGCGGCAACTTTCGAACAATCAAATTCGGTTAGC AAAAATTTTGTATCAACTGCAAAAGTTTGCCACAGCTGAGCTTGATTTTTGCGGCGCCAACTTTT GTTTACTTTGATTGTTGAATTGTCCACGAAGGCGTTGTGTAAATTCATTTGCAATGCTGATGATG ATGGTGGCAAATGTGGTATGAAAATGCGACCTAAAGACTTAAAAG Right flanking sequence: Indices 9356283 -- 9356782 AAAATGAAAAACATTGAAAGTGTCGAATAAACATCGAATCAATTTGTCACTCCATAAAGCTCTGA ACTGGATTATTGATATATCCCTGGGTCGGCCGGTAGTTATGAATTGTGGTATTGCATTATTAATA CATGTATTAAAATATTAAGCGAGACATGCAGTTGATCGGTTTATATTGTTCGCTTTTTCCTTTAA TATAATCTCTTTTGGTGTTTCGCTTTTAATTAAATAAATACAAGCATTTACAAACGTTTTCAAAT TGATTAATCGCGATTAATGCGCGACATGGGCGGGTAATGTTTAAATAATTGCTATCTACTGAATT TAAATGTGTTAACGCTCTTTTTTTTTTTTTTTTTTTTTTGTTGAACCGGAAATCTGTAGCGAATT AGTCACAAAACATTCATATAAATATAAATTGAGTTTAAATAGATTTCGAGCAGACAAAAAAACCA ACCAACAATGGGCAGCAAATTGCGAATGCCACCATTACTCATACT Found at i:9358558 original size:10 final size:10 Alignment explanation
Indices: 9358540--9358559 Score: 33 Period size: 10 Copynumber: 2.0 Consensus size: 10 9358530 AAGTACCACA 9358540 AAATATAATT 1 AAATATAATT * 9358550 AAATTTAATT 1 AAATATAATT 9358560 TTCACAACTA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 10 9 1.00 ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45 Consensus pattern (10 bp): AAATATAATT Left flanking sequence: Indices 9358040 -- 9358539 TACAAAATGTACATACACATATATAAGTAAAACCCTTTCTAGGTCGCAAAAACAATGGATGCCAA CCAAAAATGAAACAAAAATAAAATGCGAAGGAATAAATACCTTTCGGCATCGGGACATTGCGCAT ACGCCACGTGGCCCAAAAGCCGATGCGACGCAATGTGCCGAAAATGTAAATGAAATTGTTATTAA GCATTAGGACCATCGGCATCACAAAAGGGAAAAAGGAATCCGATTCGTGTGTAGGCAACAAGACG CCGGCTTAATTCGTCGACTCAAGGACGAGAGATGAGTCCTTGAGAGATACTGACAAGTCGACTTG TTTGGAAGTTGAAAAATTGCCTGATTTCTTTATCGCAAAATTCATGGTGCTGACATTTCTTTAAA GCTCCGCTTATTTATCAAGCTAAATAGGGTAAAAAGTAATGAAAGTGTAAGTCAAAAAAAAAAAA AAAGTATGCAAAATTTAAACATTAATTTTGAAGTAAAGTACCACA Right flanking sequence: Indices 9358560 -- 9359059 TTCACAACTATAACTTGTAATATATATTTTAAGCTTCTTTATCTCTATAAAGACTTTTAGCATCT TCAACCCTGTCATTCGGCCTACTTCACTGGCGTCAAAGTGCTTCAAATTGCCGGAAAAACAAGGA AAATAGGAAAAACACCCTGGCACGTGTGAGTCTCACTTTGGCCAATGCCAAAAATGCCAATAATG AGCGTCTATTAATAGCGAAGAGCGACGACGATTTGCAGCGATGTGATTCGATTTCGATTGCGGAT CGAGTTCTGGCATAACCTTTGAACCCACTTCACTGCTAAGCAGCAAGTAATTAGCAAAAGAGCCA ACTCACACACACACACACACGCACACGTACGCCTTTAAGCCTGATAAACAACGCAAATAAACGAA CACACACACACGGACAATAATAAAAAAAAAACCCAAACCGAAAGATAGCCTCATTTAAATTTCTC TTTTTGGCGCGCTCGCAATGAAAATGAAAATTGACACCCATCGCT Found at i:9358747 original size:9 final size:9 Alignment explanation
Indices: 9358733--9358754 Score: 37 Period size: 9 Copynumber: 2.4 Consensus size: 9 9358723 CACTTTGGCC 9358733 AATGCCAAA 1 AATGCCAAA * 9358742 AATGCCAAT 1 AATGCCAAA 9358751 AATG 1 AATG 9358755 AGCGTCTATT Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 9 12 1.00 ACGTcount: A:0.50, C:0.18, G:0.14, T:0.18 Consensus pattern (9 bp): AATGCCAAA Left flanking sequence: Indices 9358233 -- 9358732 AAGCATTAGGACCATCGGCATCACAAAAGGGAAAAAGGAATCCGATTCGTGTGTAGGCAACAAGA CGCCGGCTTAATTCGTCGACTCAAGGACGAGAGATGAGTCCTTGAGAGATACTGACAAGTCGACT TGTTTGGAAGTTGAAAAATTGCCTGATTTCTTTATCGCAAAATTCATGGTGCTGACATTTCTTTA AAGCTCCGCTTATTTATCAAGCTAAATAGGGTAAAAAGTAATGAAAGTGTAAGTCAAAAAAAAAA AAAAAGTATGCAAAATTTAAACATTAATTTTGAAGTAAAGTACCACAAAATATAATTAAATTTAA TTTTCACAACTATAACTTGTAATATATATTTTAAGCTTCTTTATCTCTATAAAGACTTTTAGCAT CTTCAACCCTGTCATTCGGCCTACTTCACTGGCGTCAAAGTGCTTCAAATTGCCGGAAAAACAAG GAAAATAGGAAAAACACCCTGGCACGTGTGAGTCTCACTTTGGCC Right flanking sequence: Indices 9358755 -- 9359254 AGCGTCTATTAATAGCGAAGAGCGACGACGATTTGCAGCGATGTGATTCGATTTCGATTGCGGAT CGAGTTCTGGCATAACCTTTGAACCCACTTCACTGCTAAGCAGCAAGTAATTAGCAAAAGAGCCA ACTCACACACACACACACACGCACACGTACGCCTTTAAGCCTGATAAACAACGCAAATAAACGAA CACACACACACGGACAATAATAAAAAAAAAACCCAAACCGAAAGATAGCCTCATTTAAATTTCTC TTTTTGGCGCGCTCGCAATGAAAATGAAAATTGACACCCATCGCTCAGTGCGTCTCTCTCTAGCG CCATATAGCCGTCTCTCTCTCTCTCCCTCTCTGTTTCTCTTTCGCTCTTTCGAGCAGAGCGACGG ATATAGGTTGTTAGGGTTTAAGTCAGAGGCTGCCAAAAAATTCAAATCGCTTTTTATTTCGCCCC AACTAAGTACTCATCGTGCAAGCTGACAGATAGACCCACAAAAGA Found at