TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_2R assembled 2004-3-18 md5checksum:9f4c91a2cad3c68020b05fff1adf27ee Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 20766785 ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28 Warning! 200 characters in sequence are not A, C, G, or T Found at i: i:6843653 original size:10 final size:10 Alignment explanation
Indices: 6843638--6843660 Score: 39 Period size: 10 Copynumber: 2.3 Consensus size: 10 6843628 GCGGCGGATG * 6843638 ATGGGCTGCA 1 ATGGGCTGAA 6843648 ATGGGCTGAA 1 ATGGGCTGAA 6843658 ATG 1 ATG 6843661 AGATGGAATA Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 10 12 1.00 ACGTcount: A:0.26, C:0.13, G:0.39, T:0.22 Consensus pattern (10 bp): ATGGGCTGAA Left flanking sequence: Indices 6843138 -- 6843637 CCCTTTTAAAATGCTGTTTTTAACTTAACTGCGCTTAAACCAGCAATCGTAAACAATAAACTGGC CATTAACTAACCATTAGCTGCCTGATTTTAGTTGCCAAAAAGTGACTCAAATCTTGAACAAATTA GTTTTTATTTATTTTATTTTACTTCATTACACATAAAATTAAATAAAGAGGAGTGAATTCAAGAA AACTCATCTTAAAGTATACTGAACTTCTTAAAGTATAAATATTTGCTCGTTAAATAAATAAACAA TAATGCGAAACAGCCACAAATCGCTTTCGAGCTCACCAAATCTAATGGTCAGTTATGCTGCACTT TCCGCTCCGTTGGCCAAGTCCAGAATTTTAGGGGTATGTTCCGGGTCGATCATGTTGGGTTTCGG ACAACTGCCACTTGTTTATTATGGATAAATTTATGCACAGACTTAGAACAATGCGCACACGCTCT TTCGTGTTGCCCAATAATTAATGATCGCGTACATGGCGGCGGATG Right flanking sequence: Indices 6843661 -- 6844160 AGATGGAATAGATGGAATATGGCTAATTTATGCAGTTGGGTTCAATTACCTGTTAATTGAGTTTA GTCGAGTGCGCAAGAGTCAAGACCCTGCACAGGTGCCCCATGGAGAAGTTATCCAGCGACTGCAT ATGGCAAGAGACCACAAATAACAGATCTCAGAATTAGCAAAAGTTTTCTTCTTTTTGTCTTTTTC CCAGCATCATCAAAATCGCATCAGTTTCAGTTGGTATTGTTGCTCTGTGAGCTTTGCTGATGTTG CAGTTGGAAAAGCGAAAAGCAGGTCATTACTGCCATTAAATTCGTTTCGAAAATGCAGACAAGCC GAAAAGCGAGACTAGATAACCCAAAATCAAACCAAATCCGAATAACTATGGCACAGTCGTAAACA TATTGGAAAAGAAAGAGAAATAATGGAAATGTTATTGTTGTTTGTTTTTAAATGCCATAACTGTA CAGCAGGTCGAGTGATAGATGGAGATGGAGATGTAGATGGAGCTA Found at i:6843675 original size:9 final size:9 Alignment explanation
Indices: 6843661--6843679 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 6843651 GGCTGAAATG 6843661 AGATGGAAT 1 AGATGGAAT 6843670 AGATGGAAT 1 AGATGGAAT 6843679 A 1 A 6843680 TGGCTAATTT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.47, C:0.00, G:0.32, T:0.21 Consensus pattern (9 bp): AGATGGAAT Left flanking sequence: Indices 6843161 -- 6843660 CTTAACTGCGCTTAAACCAGCAATCGTAAACAATAAACTGGCCATTAACTAACCATTAGCTGCCT GATTTTAGTTGCCAAAAAGTGACTCAAATCTTGAACAAATTAGTTTTTATTTATTTTATTTTACT TCATTACACATAAAATTAAATAAAGAGGAGTGAATTCAAGAAAACTCATCTTAAAGTATACTGAA CTTCTTAAAGTATAAATATTTGCTCGTTAAATAAATAAACAATAATGCGAAACAGCCACAAATCG CTTTCGAGCTCACCAAATCTAATGGTCAGTTATGCTGCACTTTCCGCTCCGTTGGCCAAGTCCAG AATTTTAGGGGTATGTTCCGGGTCGATCATGTTGGGTTTCGGACAACTGCCACTTGTTTATTATG GATAAATTTATGCACAGACTTAGAACAATGCGCACACGCTCTTTCGTGTTGCCCAATAATTAATG ATCGCGTACATGGCGGCGGATGATGGGCTGCAATGGGCTGAAATG Right flanking sequence: Indices 6843680 -- 6844179 TGGCTAATTTATGCAGTTGGGTTCAATTACCTGTTAATTGAGTTTAGTCGAGTGCGCAAGAGTCA AGACCCTGCACAGGTGCCCCATGGAGAAGTTATCCAGCGACTGCATATGGCAAGAGACCACAAAT AACAGATCTCAGAATTAGCAAAAGTTTTCTTCTTTTTGTCTTTTTCCCAGCATCATCAAAATCGC ATCAGTTTCAGTTGGTATTGTTGCTCTGTGAGCTTTGCTGATGTTGCAGTTGGAAAAGCGAAAAG CAGGTCATTACTGCCATTAAATTCGTTTCGAAAATGCAGACAAGCCGAAAAGCGAGACTAGATAA CCCAAAATCAAACCAAATCCGAATAACTATGGCACAGTCGTAAACATATTGGAAAAGAAAGAGAA ATAATGGAAATGTTATTGTTGTTTGTTTTTAAATGCCATAACTGTACAGCAGGTCGAGTGATAGA TGGAGATGGAGATGTAGATGGAGCTAGAGCTGGCTAAGCTTGTAG Found at i:6843939 original size:7 final size:7 Alignment explanation
Indices: 6843927--6843940 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 6843917 GTTGCAGTTG 6843927 GAAAAGC 1 GAAAAGC 6843934 GAAAAGC 1 GAAAAGC 6843941 AGGTCATTAC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.14, G:0.29, T:0.00 Consensus pattern (7 bp): GAAAAGC Left flanking sequence: Indices 6843427 -- 6843926 AGCTCACCAAATCTAATGGTCAGTTATGCTGCACTTTCCGCTCCGTTGGCCAAGTCCAGAATTTT AGGGGTATGTTCCGGGTCGATCATGTTGGGTTTCGGACAACTGCCACTTGTTTATTATGGATAAA TTTATGCACAGACTTAGAACAATGCGCACACGCTCTTTCGTGTTGCCCAATAATTAATGATCGCG TACATGGCGGCGGATGATGGGCTGCAATGGGCTGAAATGAGATGGAATAGATGGAATATGGCTAA TTTATGCAGTTGGGTTCAATTACCTGTTAATTGAGTTTAGTCGAGTGCGCAAGAGTCAAGACCCT GCACAGGTGCCCCATGGAGAAGTTATCCAGCGACTGCATATGGCAAGAGACCACAAATAACAGAT CTCAGAATTAGCAAAAGTTTTCTTCTTTTTGTCTTTTTCCCAGCATCATCAAAATCGCATCAGTT TCAGTTGGTATTGTTGCTCTGTGAGCTTTGCTGATGTTGCAGTTG Right flanking sequence: Indices 6843941 -- 6844440 AGGTCATTACTGCCATTAAATTCGTTTCGAAAATGCAGACAAGCCGAAAAGCGAGACTAGATAAC CCAAAATCAAACCAAATCCGAATAACTATGGCACAGTCGTAAACATATTGGAAAAGAAAGAGAAA TAATGGAAATGTTATTGTTGTTTGTTTTTAAATGCCATAACTGTACAGCAGGTCGAGTGATAGAT GGAGATGGAGATGTAGATGGAGCTAGAGCTGGCTAAGCTTGTAGACTCCAATGTCCAATGTAGAT GGATGGCGATTATGATGCCAGCGCTGGTGGTGACTGGTCAATCAAAAGACTTAGGCAACGAACTT TACTATGCTGTTCGTAGTTTTTGTTGCTGTGTTCTACTGCGTTTTGTAAAGAAATTTTACTTTCA AATTAGGCCGCAACTGTTGCTTTTTATCGCTTTCTTCTCTCATTCATTCGCGCGCACATTATGAC TCCAGATAATATGCCTTTACCTCTACGCACCCGTCTCTTTTGTTC Found at i:6844194 original size:7 final size:7 Alignment explanation
Indices: 6844182--6844196 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 6844172 GCTTGTAGAC 6844182 TCCAATG 1 TCCAATG 6844189 TCCAATG 1 TCCAATG 6844196 T 1 T 6844197 AGATGGATGG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.27, C:0.27, G:0.13, T:0.33 Consensus pattern (7 bp): TCCAATG Left flanking sequence: Indices 6843682 -- 6844181 GCTAATTTATGCAGTTGGGTTCAATTACCTGTTAATTGAGTTTAGTCGAGTGCGCAAGAGTCAAG ACCCTGCACAGGTGCCCCATGGAGAAGTTATCCAGCGACTGCATATGGCAAGAGACCACAAATAA CAGATCTCAGAATTAGCAAAAGTTTTCTTCTTTTTGTCTTTTTCCCAGCATCATCAAAATCGCAT CAGTTTCAGTTGGTATTGTTGCTCTGTGAGCTTTGCTGATGTTGCAGTTGGAAAAGCGAAAAGCA GGTCATTACTGCCATTAAATTCGTTTCGAAAATGCAGACAAGCCGAAAAGCGAGACTAGATAACC CAAAATCAAACCAAATCCGAATAACTATGGCACAGTCGTAAACATATTGGAAAAGAAAGAGAAAT AATGGAAATGTTATTGTTGTTTGTTTTTAAATGCCATAACTGTACAGCAGGTCGAGTGATAGATG GAGATGGAGATGTAGATGGAGCTAGAGCTGGCTAAGCTTGTAGAC Right flanking sequence: Indices 6844197 -- 6844696 AGATGGATGGCGATTATGATGCCAGCGCTGGTGGTGACTGGTCAATCAAAAGACTTAGGCAACGA ACTTTACTATGCTGTTCGTAGTTTTTGTTGCTGTGTTCTACTGCGTTTTGTAAAGAAATTTTACT TTCAAATTAGGCCGCAACTGTTGCTTTTTATCGCTTTCTTCTCTCATTCATTCGCGCGCACATTA TGACTCCAGATAATATGCCTTTACCTCTACGCACCCGTCTCTTTTGTTCTTCTTTTGAAGAGCCA AAAAAGCAAAGCACAGAACAACAAAAAAAAAAAAAAAAAAAAAACAAGCACAGTCTTCTGAGATC AGTAGAACTCGTAGATATGAACAGTTAGGAGTCCCCAATAATTTTTCTGTGGTGCCTTCGCGCGC TGTGTGTGTGAAATATTTATGTAAATTGGCCTGGCCGAAAGCAGCTGCTAAAGTGCAACTGATTA GCGGTATAAACGGGGTGTTCTGAGCCAAGTGCAGCAGCGGCCGCA Found at i:6844927 original size:8 final size:9 Alignment explanation
Indices: 6844914--6844932 Score: 31 Period size: 8 Copynumber: 2.2 Consensus size: 9 6844904 GATGTTGCTC 6844914 CATTT-CAG 1 CATTTCCAG 6844922 CATTTCCAG 1 CATTTCCAG 6844931 CA 1 CA 6844933 AAACGGACCA Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 8 5 0.50 9 5 0.50 ACGTcount: A:0.26, C:0.32, G:0.11, T:0.32 Consensus pattern (9 bp): CATTTCCAG Left flanking sequence: Indices 6844414 -- 6844913 ACCTCTACGCACCCGTCTCTTTTGTTCTTCTTTTGAAGAGCCAAAAAAGCAAAGCACAGAACAAC AAAAAAAAAAAAAAAAAAAAAACAAGCACAGTCTTCTGAGATCAGTAGAACTCGTAGATATGAAC AGTTAGGAGTCCCCAATAATTTTTCTGTGGTGCCTTCGCGCGCTGTGTGTGTGAAATATTTATGT AAATTGGCCTGGCCGAAAGCAGCTGCTAAAGTGCAACTGATTAGCGGTATAAACGGGGTGTTCTG AGCCAAGTGCAGCAGCGGCCGCAGCAGCAGCAGCAGCGGGGCTTTTGGTAACGGTAAACGCTATA CAGTTTTCCCACTGCGACGCACTTGATCCAGTGCAGCATTATGCCAGCTCCTCGCCGTGTCCCAA CCAATAAGTATATACACTTGCCGCCAGAACGAGTTTTAATTGCAACATTTGTTTAAATGTTGTCC GTTAGCCACCGGCAAACTAGCACCAACTGGATGTAGATGTTGCTC Right flanking sequence: Indices 6844933 -- 6845432 AAACGGACCAAACAATTTCTGCCTCATTAAGCGGGGTCCCAAAGAATGTCAACTGACTAGCTGGT TTTCGTTTCGCTAGCTACGAATTTGGACTTATTTTTAATTAATTAGTGCTTGTTTTCTTTTACTC CACTCCACACCACCACCACCACCGCCCACCCTCCGCCACTCAACCAGTTGCAGCTGCGGCGTCGA ATCCCCCAGAGTGCGTTCCATCCAGCTATGTTGCTGTTAAGATGCGGCTCCAATCCTTACCGCTG CTCCTTCTGCTCGCTGTCGTCACCCTTCCGCCTGCCACGCCCACTTCGGCTGCCCGACCGCTTAC ACACCCGAGGGCGAGGAACCACTATCCCAGCGAAGATCTCGCCGAGGAGCCACTAATGCCGGCCA GCTTGCTGCTCGAGGAACTGCAGCAGACCAACGGGCAGCTCGTCAATCTGACACGACAGCACGAC GGCGATACCTTCCACACAAGCGGTGAGTTAACCACTTGGAAACAG Found at i:6848652 original size:10 final size:10 Alignment explanation
Indices: 6848634--6848655 Score: 37 Period size: 10 Copynumber: 2.2 Consensus size: 10 6848624 AGTATGAGAG 6848634 TTAAAAATGA 1 TTAAAAATGA * 6848644 TTAATAATGA 1 TTAAAAATGA 6848654 TT 1 TT 6848656 TGTTGCATAC Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41 Consensus pattern (10 bp): TTAAAAATGA Left flanking sequence: Indices 6848134 -- 6848633 GTACAAGTATAGGCAGTTTAAAGGAGGATATGGGCATTGTGAAAAATAATCCATTGCTGCAGCAT TTTCCACAGTTGAGTGAACGAGAACACAATTCCGGGTTTGCCAGCGATATTTCAAATTCGAATTC TGAGTGTGAAATGGAGGAAAAGATCAAGGTGGGTTGGCTATATAATTCTGATTGATGAAATATAC AGAACTACACTTTATAGACATCCGTGCTGGTGCATCCACAGCTCAGTAAGTCGCCGAAGCCTTCG GGTGGAACAGATAACGCTGCAATGGATGTGGATGACTTCCTGCAGGACAACGAGTGTCTGCCCGC TGAAAATGTGGCCGTAATTGATGAGCTCATGAGCGAGGAGAAGCTGGAGAACTTGCGTGCCATGG TCAGTGGTAATGTGCGCAAGAAGCTCTACTTCAATCCCGCTTATTTTGAGCCTCATCTACTAGCG GTAAGTTTTAATTAACAAATGCATGAAAATAAATAAGTATGAGAG Right flanking sequence: Indices 6848656 -- 6849155 TGTTGCATACCCGTTCGTTTTTTTTTTACCAACTTTTCAGGAACCGCCTCAAGCTGCCATTGAGT TCCTGCAGAAGATTCGCGAGGTCATCGCCATTGCCAAGTACAAAATGGCCTCAAAGCGTTACCAA CCCTCTCTGAACATAATTCCGGAGGAGCAGCATCCGGAGTCCAGTTCCAGTTCACCCATGTTCAA TATTCCGCTGCAGCAGAGTCTGGCGGGGAAGGGAATGGGCGATAAGCGGAACAGCATCGAGCAGT GGCTGCAAAGTGTACCAAACTCGGATGCGACTCCGGCACCGAAGACGCTCGACCGACCTGCTCCA CCGACTGCAAAGAAGCCATCATCCGGATCTCCCAACAAGGGCTCATTGAGAAAGGAGATAAGTGC ACCCAAGGAGCGACCACCACCACCTCCAATGCAGAAATCAAAAGCAGATGAAGGTAATGCAAAGT CATCTTCTCCAGCGCCTTCGGGTCCACATTCCAGCCGAAGCACCG Found at i:6850235 original size:7 final size:8 Alignment explanation
Indices: 6850223--6850240 Score: 29 Period size: 7 Copynumber: 2.4 Consensus size: 8 6850213 AAGGACCGCT 6850223 TCCTTC-A 1 TCCTTCGA 6850230 TCCTTCGA 1 TCCTTCGA 6850238 TCC 1 TCC 6850241 AGCAACTCAT Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 7 6 0.60 8 4 0.40 ACGTcount: A:0.11, C:0.44, G:0.06, T:0.39 Consensus pattern (8 bp): TCCTTCGA Left flanking sequence: Indices 6849723 -- 6850222 AACCCAGCAAACGCAAGAGTTCCCACTCGTCCAGTTCACCGTCATCCGATGTGAGTTCCCAATTG AGTCCAAGCTTGAGTACCGCTCTTCCGCTCGAGGAGGAGATGGAGATCAGTCACACTGTATACGA TCGTATGAACGGATTTCGCAAGGAGGGCGAGATGAAAAAGCGTTTGGCTGCAAAGCACCAACATC CACATCCTGGGCAGCAACAAAGGCAGAAGGAGGCGGCAGCTCGAATCAAATATGACACGCCCTTT CGGGGAAGCATGACCATCGAGGTGGAACATGAACCCCCTTCCGATCTGGAGCGAACGGATAGCGA TCAATTCGAACCGGATACACTGGATCGTAAGCCCAAGAAGCAGAGCTTCTGCGACATTTCAGCTT GGGATGGGCATAAGCCAATCGACTCGGACTTTAGCCAGATCAGTTCTCTGCCGGATTTGAGTCGG CAAATCAGTCCTGCACCCAATCAGGGCATTAAACCAAGGACCGCT Right flanking sequence: Indices 6850241 -- 6850740 AGCAACTCATTTAGGAACTTGAGAGAGATCTATGAGTCGCCTTTAATCGCTCAGGACAACATCAA GTACGAGAAGAAGGTTGCACAAACACCGGAAGAGGAGGGGCGTATTCTCACCCTGGAGGCCAAGC ACTCTCGTCGCCAGCGTCTGATGGAGACGTCACCAACCCACTCAGTGATGGATATCACAAAAGTA AACAAGACCACTATTACGATTTCATCACCGAAGCCAGCGGATAAAGCTCCTCCTACTCGACCAAA GGTCAATCAGCATTACTGCCCACCGTTGGTGCAAAGCAAACGACCACTACCACCTCCTCCCCCAA ACTCATCGGAACATCAGGCTCCAGATGAAGATGCCTACAGCCTGCACAGTGAGATCACAGGCACC TCGGAGTTCGAGAACTCCTGCAACAACACCATGTCCAGTGCTATATCGGCAACCACCGAGGAGAG AACTCATGCAAAGGGTTCCAGATCCCCGAAAATCAATGCTAAGAT Found at i:6853431 original size:8 final size:8 Alignment explanation
Indices: 6853415--6853432 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 6853405 CCAGGGAGAT * 6853415 TCCGGTGG 1 TCCGCTGG 6853423 TCCGCTGG 1 TCCGCTGG 6853431 TC 1 TC 6853433 TACAACAACA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.00, C:0.33, G:0.39, T:0.28 Consensus pattern (8 bp): TCCGCTGG Left flanking sequence: Indices 6852915 -- 6853414 AGATCTCGATGAGGTATAGAGGAAATCACCGATGCGGAGGCACAATTTACAGATCAAACCAGATC ATCAGTGCTGCCCATTGTGTAAACACCTTGTCCGGCCCGGAAAACCTTACCATTGTGGCTGGTTC CTCGAACATCTGGTTCCCCACGGGTCCGCAGCAGGAGTTGGAAGTCCGTGAGATCATCATTCATC CCAAGTATCGCACTCTGAACAACGACTACGATGCGGCAATTCTGATCCTGGATGGGGATTTCGAG TTCAACGACGCCGTGCAGCCGATTGAGTTGGCCAAGGAGCGGCCCGATCATGATACACCCGTTAC CGTGACGGGCTGGGGAACCACCAGCGAAGGCGGAACCATCTCCGACGTCCTGCAGGAGGTCAGCG TTAATGTGGTGGACAACTCGAACTGCAAGAACGCCTATTCCATTATGCTGACCAGTCGTATGCTT TGCGCCGGAGTCAACGGAGGTGGAAAGGATGCATGCCAGGGAGAT Right flanking sequence: Indices 6853433 -- 6853932 TACAACAACACACTCCTGGGCATTGTGTCCTGGGGAACGGGCTGTGCCCGTGAGAAATATCCCGG AGTCTATTGCTCCGTACCGGATGTTCTCGATTGGCTGGTGGAGACCGTTGCGGATAAAGAGAGTG TGGGCAAAATCGACTTTCTGTAATAATATTAAGGCAAAAATACTATTCAAACGTCTTGTAACTAG CCTCAATCAACTCAAAACCTTTTATATCTTCGAATTACGTAAGAAATGACCAATACAGACGATAA CGTAGTATATTGTTTGTTTGATTACGGTTTTATTATTAAATTAGGTAGCTCTATCCGACGGTAAC CACTTAAAGATAGCGTATCGATTGCCGCGAAAATGCCTATGTTTATTGCACTCCAGCAGCTGCTA TGGTTTCCTCGATCCAATCCACAAAGCTGGCCACGTAGCAGTAGACGGTGGGGTAGTTGGGTCGG GCACATCCGCGTCCCCAGGACACCAGACCCACCAGCTGACCATCG Found at i:6863713 original size:7 final size:7 Alignment explanation
Indices: 6863701--6863715 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 6863691 TAGACCCATA 6863701 TTTCCCC 1 TTTCCCC 6863708 TTTCCCC 1 TTTCCCC 6863715 T 1 T 6863716 CCTCCCCTCC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47 Consensus pattern (7 bp): TTTCCCC Left flanking sequence: Indices 6863201 -- 6863700 TGATTGATTGGATTTAACTATCCCCATATTCTGTTAGAATGCCCTAAGGATTATTAGCGTGATTG GAATTGTAAACAACTAGGCATTATTAAGAAGCAAACTTGCGCAATGTAGTCGTAAATAAAACATG CATTTTTAACTACAACTTTAAAGCTCTATTAGTTTTCCAAGACTGTACGTTAGGCGGATAGGGAA ATCTAGATCATGATCAAGAAGAATATGAATTTTATAGGCTCGATACGCATCATTCTACATAAGAC TTACTTTATAACGATATATTCGTAACCATTTTATTTTTATACTCTTTACTCGTAGAGTAAAAGTG TATAATAGATTCGTTTAAATGTATCTAACAGCTACAAGTTAGTGTTTCCAATCATATAATGTACA TATATTCTTGATCAGGATCGATAGCCCCATCCGTCTGTCGAGTTTCTTAGCAACTATAAAAGCTA GAAGCTTGAGATTAGGCATACAGATTCTAGAGACATAGACCCATA Right flanking sequence: Indices 6863716 -- 6864215 CCTCCCCTCCCTCCCCTCCCACAATTTTGAAAAATATTTTGATTTTTTTTCACATTTTTATTGTT TTGTAAATTTGTATCGATTCGCCAAAAATATTTTTGCCACGCCCACTCTAACGCCCACAAACCAA TCAAAACTTTTTTTTCATTCATTCATTCATTCATTTCATTCATTAATTTCATTCATTCATTTCAT TCATTAATTTCATTCATTCATTTCATTCATTAATTTCATTCATTTCATTCATTTCATTCATTTCA TTCATTTCATTCATTTCATTCATTTCATTCATTTCATTCATTTCATTCATTTCATTCATTTCATT CATTTCATTCATTTCATTCATTTCATTCATTTCATTCATTTCATTCATTTCATTCATTTCATTCA TTTCATTCATTTCATTCATTTCATTCATTTCATTCATTTCATTCATTTCATTCATTTCATTCATT TCATTCATTTCATTCATTTCATTCATTTCATTCATTTCATTCATT Found at i:6863730 original size:9 final size:9 Alignment explanation
Indices: 6863710--6863735 Score: 45 Period size: 9 Copynumber: 3.0 Consensus size: 9 6863700 ATTTCCCCTT 6863710 TCCCCT-CC 1 TCCCCTCCC 6863718 TCCCCTCCC 1 TCCCCTCCC 6863727 TCCCCTCCC 1 TCCCCTCCC 6863736 ACAATTTTGA Statistics Matches: 17, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 8 6 0.35 9 11 0.65 ACGTcount: A:0.00, C:0.77, G:0.00, T:0.23 Consensus pattern (9 bp): TCCCCTCCC Left flanking sequence: Indices 6863210 -- 6863709 GGATTTAACTATCCCCATATTCTGTTAGAATGCCCTAAGGATTATTAGCGTGATTGGAATTGTAA ACAACTAGGCATTATTAAGAAGCAAACTTGCGCAATGTAGTCGTAAATAAAACATGCATTTTTAA CTACAACTTTAAAGCTCTATTAGTTTTCCAAGACTGTACGTTAGGCGGATAGGGAAATCTAGATC ATGATCAAGAAGAATATGAATTTTATAGGCTCGATACGCATCATTCTACATAAGACTTACTTTAT AACGATATATTCGTAACCATTTTATTTTTATACTCTTTACTCGTAGAGTAAAAGTGTATAATAGA TTCGTTTAAATGTATCTAACAGCTACAAGTTAGTGTTTCCAATCATATAATGTACATATATTCTT GATCAGGATCGATAGCCCCATCCGTCTGTCGAGTTTCTTAGCAACTATAAAAGCTAGAAGCTTGA GATTAGGCATACAGATTCTAGAGACATAGACCCATATTTCCCCTT Right flanking sequence: Indices 6863736 -- 6864235 ACAATTTTGAAAAATATTTTGATTTTTTTTCACATTTTTATTGTTTTGTAAATTTGTATCGATTC GCCAAAAATATTTTTGCCACGCCCACTCTAACGCCCACAAACCAATCAAAACTTTTTTTTCATTC ATTCATTCATTCATTTCATTCATTAATTTCATTCATTCATTTCATTCATTAATTTCATTCATTCA TTTCATTCATTAATTTCATTCATTTCATTCATTTCATTCATTTCATTCATTTCATTCATTTCATT CATTTCATTCATTTCATTCATTTCATTCATTTCATTCATTTCATTCATTTCATTCATTTCATTCA TTTCATTCATTTCATTCATTTCATTCATTTCATTCATTTCATTCATTTCATTCATTTCATTCATT TCATTCATTTCATTCATTTCATTCATTTCATTCATTTCATTCATTTCATTCATTTCATTCATTTC ATTCATTTCATTCATTTCATTCATTTCATTCATTTCATTCATTTC Found at i:6863885 original size:9 final size:9 Alignment explanation
Indices: 6863858--6864595 Score: 1312 Period size: 9 Copynumber: 82.8 Consensus size: 9 6863848 AAAACTTTTT 6863858 TTTCATTCA 1 TTTCATTCA 6863867 -TTCATTCA 1 TTTCATTCA 6863875 -TTCATTTCA 1 TTTCA-TTCA * 6863884 -TTCATTAA 1 TTTCATTCA 6863892 TTTCATTCA 1 TTTCATTCA 6863901 -TTCATTTCA 1 TTTCA-TTCA * 6863910 -TTCATTAA 1 TTTCATTCA 6863918 TTTCATTCA 1 TTTCATTCA 6863927 -TTCATTTCA 1 TTTCA-TTCA * 6863936 -TTCATTAA 1 TTTCATTCA 6863944 TTTCATTCA 1 TTTCATTCA 6863953 TTTCATTCA 1 TTTCATTCA 6863962 TTTCATTCA 1 TTTCATTCA 6863971 TTTCATTCA 1 TTTCATTCA 6863980 TTTCATTCA 1 TTTCATTCA 6863989 TTTCATTCA 1 TTTCATTCA 6863998 TTTCATTCA 1 TTTCATTCA 6864007 TTTCATTCA 1 TTTCATTCA 6864016 TTTCATTCA 1 TTTCATTCA 6864025 TTTCATTCA 1 TTTCATTCA 6864034 TTTCATTCA 1 TTTCATTCA 6864043 TTTCATTCA 1 TTTCATTCA 6864052 TTTCATTCA 1 TTTCATTCA 6864061 TTTCATTCA 1 TTTCATTCA 6864070 TTTCATTCA 1 TTTCATTCA 6864079 TTTCATTCA 1 TTTCATTCA 6864088 TTTCATTCA 1 TTTCATTCA 6864097 TTTCATTCA 1 TTTCATTCA 6864106 TTTCATTCA 1 TTTCATTCA 6864115 TTTCATTCA 1 TTTCATTCA 6864124 TTTCATTCA 1 TTTCATTCA 6864133 TTTCATTCA 1 TTTCATTCA 6864142 TTTCATTCA 1 TTTCATTCA 6864151 TTTCATTCA 1 TTTCATTCA 6864160 TTTCATTCA 1 TTTCATTCA 6864169 TTTCATTCA 1 TTTCATTCA 6864178 TTTCATTCA 1 TTTCATTCA 6864187 TTTCATTCA 1 TTTCATTCA 6864196 TTTCATTCA 1 TTTCATTCA 6864205 TTTCATTCA 1 TTTCATTCA 6864214 TTTCATTCA 1 TTTCATTCA 6864223 TTTCATTCA 1 TTTCATTCA 6864232 TTTCATTCA 1 TTTCATTCA 6864241 TTTCATTCA 1 TTTCATTCA 6864250 TTTCATTCA 1 TTTCATTCA 6864259 TTTCATTCA 1 TTTCATTCA 6864268 TTTCATTCA 1 TTTCATTCA 6864277 TTTCATTCA 1 TTTCATTCA 6864286 TTTCATTCA 1 TTTCATTCA 6864295 TTTCATTCA 1 TTTCATTCA 6864304 TTTCATTCA 1 TTTCATTCA 6864313 TTTCATTCA 1 TTTCATTCA 6864322 TTTCATTCA 1 TTTCATTCA 6864331 TTTCATTCA 1 TTTCATTCA 6864340 TTTCATTCA 1 TTTCATTCA 6864349 TTTCATTCA 1 TTTCATTCA 6864358 TTTCATTCA 1 TTTCATTCA 6864367 TTTCATTCA 1 TTTCATTCA 6864376 TTTCATTCA 1 TTTCATTCA 6864385 TTTCATTCA 1 TTTCATTCA 6864394 TTTCATTCA 1 TTTCATTCA 6864403 TTTCATTCA 1 TTTCATTCA 6864412 TTTCATTCA 1 TTTCATTCA 6864421 TTTCATTCA 1 TTTCATTCA 6864430 TTTCATTCA 1 TTTCATTCA 6864439 TTTCATTCA 1 TTTCATTCA 6864448 TTTCATTCA 1 TTTCATTCA 6864457 TTTCATTCA 1 TTTCATTCA 6864466 TTTCATTCA 1 TTTCATTCA 6864475 TTTCATTCA 1 TTTCATTCA 6864484 TTTCATTCA 1 TTTCATTCA 6864493 TTTCATTCA 1 TTTCATTCA 6864502 TTTCATTCA 1 TTTCATTCA 6864511 TTTCATTCA 1 TTTCATTCA 6864520 TTTCATTCA 1 TTTCATTCA 6864529 TTTCATTCA 1 TTTCATTCA * 6864538 -TTCATTTA 1 TTTCATTCA * 6864546 TATCATTCA 1 TTTCATTCA 6864555 -TTCATTTCA 1 TTTCA-TTCA 6864564 -TTCATATCA 1 TTTCAT-TCA 6864573 -TTCATTCA 1 TTTCATTCA 6864581 TTTCATTCA 1 TTTCATTCA 6864590 -TTCATT 1 TTTCATT 6864596 TTCACTGTGG Statistics Matches: 709, Mismatches: 10, Indels: 21 0.96 0.01 0.03 Matches are distributed among these distances: 8 49 0.07 9 660 0.93 ACGTcount: A:0.23, C:0.22, G:0.00, T:0.55 Consensus pattern (9 bp): TTTCATTCA Left flanking sequence: Indices 6863358 -- 6863857 ATTAGTTTTCCAAGACTGTACGTTAGGCGGATAGGGAAATCTAGATCATGATCAAGAAGAATATG AATTTTATAGGCTCGATACGCATCATTCTACATAAGACTTACTTTATAACGATATATTCGTAACC ATTTTATTTTTATACTCTTTACTCGTAGAGTAAAAGTGTATAATAGATTCGTTTAAATGTATCTA ACAGCTACAAGTTAGTGTTTCCAATCATATAATGTACATATATTCTTGATCAGGATCGATAGCCC CATCCGTCTGTCGAGTTTCTTAGCAACTATAAAAGCTAGAAGCTTGAGATTAGGCATACAGATTC TAGAGACATAGACCCATATTTCCCCTTTCCCCTCCTCCCCTCCCTCCCCTCCCACAATTTTGAAA AATATTTTGATTTTTTTTCACATTTTTATTGTTTTGTAAATTTGTATCGATTCGCCAAAAATATT TTTGCCACGCCCACTCTAACGCCCACAAACCAATCAAAACTTTTT Right flanking sequence: Indices 6864596 -- 6865095 TTCACTGTGGAGTTTCTATCGATATGCCAGAAGAAAGATGCTAGTTCGTTCACCCTGACACTAGC TGAGTAACGAGAGTATCTGATAGTCGGGGAACTCGAATATAGCATTCTCTTTTGTTAAAGAGTAA GTTCGGTTAACATAAGTTAAACTATGTAGTAATTGATCGAAAACGGGTACCTCAACAAATTACCT TTAATTTATTAAAATGATTTAAACCATTATTAACCTCCCGACAGAAATCTAGGTGTTTGTTATTT TTCAGGAGGTGAGAATACATTTTTTAGAAGGTTTCCTTTCCCATTTGCTGAATAAGACACATTAC TGTTGAATCAGTAATAGGTCAAAACCACAATGAAACATAATAAAAGTAATATCCAAACTGAAATT TATTTCGCATACTTCTTAGGCATTGCTAATAACCCAGGAGCGGAGGGCAGCAACATCGGCATAGA CACCGGGGTAGTTGGAGTAAGCGCATCCGTATCCCCAGGAGACAA Found at i:6867919 original size:9 final size:9 Alignment explanation
Indices: 6867901--6868683 Score: 1370 Period size: 9 Copynumber: 87.8 Consensus size: 9 6867891 CCACAGTGAA 6867901 AATG-AATG 1 AATGAAATG 6867909 AATGAAATG 1 AATGAAATG 6867918 AATG-AATG 1 AATGAAATG 6867926 ATATG-AATG 1 A-ATGAAATG 6867935 AAATG-AATG 1 -AATGAAATG * * 6867944 AATGATATA 1 AATGAAATG 6867953 AATG-AATG 1 AATGAAATG 6867961 AATGAAATG 1 AATGAAATG 6867970 AATGAAATG 1 AATGAAATG 6867979 AATGAAATG 1 AATGAAATG 6867988 AATGAAATG 1 AATGAAATG 6867997 AATGAAATG 1 AATGAAATG 6868006 AATGAAATG 1 AATGAAATG 6868015 AATGAAATG 1 AATGAAATG 6868024 AATGAAATG 1 AATGAAATG 6868033 AATGAAATG 1 AATGAAATG 6868042 AATGAAATG 1 AATGAAATG 6868051 AATGAAATG 1 AATGAAATG 6868060 AATGAAATG 1 AATGAAATG 6868069 AATGAAATG 1 AATGAAATG 6868078 AATGAAATG 1 AATGAAATG 6868087 AATGAAATG 1 AATGAAATG 6868096 AATGAAATG 1 AATGAAATG 6868105 AATGAAATG 1 AATGAAATG 6868114 AATGAAATG 1 AATGAAATG 6868123 AATGAAATG 1 AATGAAATG 6868132 AATGAAATG 1 AATGAAATG 6868141 AATGAAATG 1 AATGAAATG 6868150 AATGAAATG 1 AATGAAATG 6868159 AATGAAATG 1 AATGAAATG 6868168 AATGAAATG 1 AATGAAATG 6868177 AATGAAATG 1 AATGAAATG 6868186 AATGAAATG 1 AATGAAATG 6868195 AATGAAATG 1 AATGAAATG 6868204 AATGAAATG 1 AATGAAATG 6868213 AATGAAATG 1 AATGAAATG 6868222 ATATGAAATG 1 A-ATGAAATG 6868232 AATGAAATG 1 AATGAAATG 6868241 AATGAAATG 1 AATGAAATG 6868250 AATGAAATG 1 AATGAAATG 6868259 AATGAAATG 1 AATGAAATG 6868268 AATGAAATG 1 AATGAAATG 6868277 AATGAAATG 1 AATGAAATG 6868286 AATGAAATG 1 AATGAAATG 6868295 AATGAAATG 1 AATGAAATG 6868304 AATGAAATG 1 AATGAAATG 6868313 AATGAAATG 1 AATGAAATG 6868322 AATGAAATG 1 AATGAAATG 6868331 AATGAAATG 1 AATGAAATG 6868340 AATGAAATG 1 AATGAAATG 6868349 AATGAAATG 1 AATGAAATG 6868358 AATGAAATG 1 AATGAAATG 6868367 AATGAAATG 1 AATGAAATG 6868376 AATGAAATG 1 AATGAAATG 6868385 AATGAAATG 1 AATGAAATG 6868394 AATGAAATG 1 AATGAAATG 6868403 AATGAAATG 1 AATGAAATG 6868412 AATGAAATG 1 AATGAAATG 6868421 AATGAAATG 1 AATGAAATG 6868430 AATGAAATG 1 AATGAAATG 6868439 AATGAAATG 1 AATGAAATG 6868448 AATGAAATG 1 AATGAAATG 6868457 AATGAAATG 1 AATGAAATG 6868466 AATGAAATG 1 AATGAAATG 6868475 AATGAAATG 1 AATGAAATG 6868484 AATGAAATG 1 AATGAAATG 6868493 AATGAAATG 1 AATGAAATG 6868502 AATGAAATG 1 AATGAAATG 6868511 AATGAAATG 1 AATGAAATG 6868520 AATGAAATG 1 AATGAAATG 6868529 AATGAAATG 1 AATGAAATG 6868538 AATGAAATG 1 AATGAAATG 6868547 AATGAAATG 1 AATGAAATG 6868556 AATGAAATG 1 AATGAAATG 6868565 AATGAAATG 1 AATGAAATG 6868574 AATG-AATG 1 AATGAAATG 6868582 AAATG-AATG 1 -AATGAAATG * 6868591 AATGAAATT 1 AATGAAATG 6868600 AATG-AATG 1 AATGAAATG 6868608 AAATG-AATG 1 -AATGAAATG * 6868617 AATGAAATT 1 AATGAAATG 6868626 AATG-AATG 1 AATGAAATG 6868634 AAATG-AATG 1 -AATGAAATG * 6868643 AATGAAATT 1 AATGAAATG 6868652 AATG-AATG 1 AATGAAATG 6868660 AAATG-AATG 1 -AATGAAATG 6868669 AATG-AATG 1 AATGAAATG 6868677 AATGAAA 1 AATGAAA 6868684 AAAAAGTTTT Statistics Matches: 751, Mismatches: 10, Indels: 27 0.95 0.01 0.03 Matches are distributed among these distances: 8 56 0.07 9 685 0.91 10 10 0.01 ACGTcount: A:0.55, C:0.00, G:0.22, T:0.23 Consensus pattern (9 bp): AATGAAATG Left flanking sequence: Indices 6867401 -- 6867900 TTGTCTCCTGGGGATACGGATGCGCTTACTCCAACTACCCCGGTGTCTATGCCGATGTTGCTGCC CTCCGCTCCTGGGTTATTAGCAATGCCTAAGAAGTATGCGAAATAAATTTCAGTTTGGATATTAC TTTTATTATGTTTCATTGTGGTTTTGACCTATTACTGATTCAACAGTAATGTGTCTTATTCAGCA AATGGGAAAGGAAACCTTCTAAAAAATGTATTCTCACCTCCTGAAAAATAACAAACACCTAGATT TCTGTCGGGAGGTTAATAATGGTTTAAATCATTTTAATAAATTAAAGGTAATTTGTTGAGGTACC CGTTTTCGATCAATTACTACATAGTTTAACTTATGTTAACCGAACTTACTCTTTAACAAAAGAGA ATGCTATATTCGAGTTCCCCGACTATCAGATACTCTCGTTACTCAGCTAGTGTCAGGGTGAACGA ACTAGCATCTTTCTTCTGGCATATCGATAGAAACTCCACAGTGAA Right flanking sequence: Indices 6868684 -- 6869183 AAAAAGTTTTGATTGGTTTGTGGGCGTTAGAGTGGGCGTGGCAAAAATATTTTTGGCGAATCGAT ACAAATTTACAAAACAATAAAAATGTGAAAAAAATCAAAATATTTTTCAAAATTGTGGGAGGGGA AATATGGGTCTATGTCTCTAGAATCTGTATGCCTAATCTCAAGCTTCTAGCTTTTATAGTTGCTA AGAACTCGACAGACGGATGGGGCTATCGATCCTGATCAAGAATATATGTACATTATATGATTGGA AACACTAACTTGTAGCTGTTAGATACATTTAAACGAATCTATTATACACTTTTACTCTACGAGTA AAGAGTATAAAAATAAAATGGTTACGAATATATCGTTATAAAGTAAGTCTTATGTAGAATGATGC GTATCGAGCCTATAAAATTCATATTCTTCTTGATCATGATCTAGATTTCCCTATCCGCCTAACGT ACAGTCTTGGAAAACTAATAGAGCTTTAAAGTTGTAGTTAAAAAT Found at i:6876125 original size:7 final size:7 Alignment explanation
Indices: 6876113--6876126 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 6876103 GTACCCATGG 6876113 CGAATAT 1 CGAATAT 6876120 CGAATAT 1 CGAATAT 6876127 AATATAAATA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29 Consensus pattern (7 bp): CGAATAT Left flanking sequence: Indices 6875613 -- 6876112 TGCTGCTGGAGGCACTGCATCGCCGTCTTCAAGTGGATCTCGATCTGGTCGCAACAGGCGTAAAA GTCTTCCAAGTGCTTGTCGAACCGCGGAACATGGTGGGCACCCGTGTCCCTCTTTAAGTTGTCCG CGAGATTGTTTTGCTGCAGCGCGAAGGCGCTCGACCGGATGGTGAGGAACATGGACTCCCGCAGT GGTCCCAGCAAACTCTTCACCCTGGAAATGTTGTCCAATTTTTCGGCCTGCTGCTGCTGCTGCAG TGGCTGTGGAGGCTGCTGCTGTTGATGCTGCACTGGTCCTGGGGGTCCCGATGGCGAGGATTGCA TTACCTGCATCATTTGTGGCCCAGACATGGGCATCATGTTCATGTTGGGATTCATTTGGCACTCG AAATCGATGGATATTGGGGGAGAAAAATATTGAACAGCCGCGAATTGTTTTCTTTTTGTGAAGAA AAACCCGTTAGGAGATTTCTCACATTTGCGTTCGCGTACCCATGG Right flanking sequence: Indices 6876127 -- 6876626 AATATAAATATAACTAAGAGTTGCTAAAAAATACAAAAGTTGTACTGTAAATTTAAAAAATTCTT TAAAAAAAACTAGTTTAGAAACAAGGACTACCCAATATTTCATATTGTTACATACATAAAAGTGT ATCTATAGCATAACTCACTACGAAAAAGTAGAGGTAACAATATGTTTTGAAATTAAAAGTTGGCC ATTATTGAAAGTGTTCGTTCATATTCTAACTGTCAAACAAGTGATAGCTAATGTCAACCGACCGG AAAGAGCTGTCATCTCATTTAGTGTATGCGTATCCCAAATAAAAAACGATGTGTAATGTTTCATT TAGCATTGAGTGTTTTTAGTTCTGTTTTAATTAATTATTAGTTTTTGTTTATTGCTTAAAATAGT GTGAGCAAAAAAGTTTAGTTAGTAGTCTTAGATATGAAAATCAAATTTATCTTGCTATAAAATAG CTATTCTGGCCGGCGTCAATAACCGATAACGATAACTTGCGACCT Found at i:6878929 original size:7 final size:7 Alignment explanation
Indices: 6878913--6878929 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 6878903 GGCGCATGCA * 6878913 CAATCGG 1 CAAGCGG 6878920 CAAGCGG 1 CAAGCGG 6878927 CAA 1 CAA 6878930 TGGTGGGCAG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.35, C:0.29, G:0.29, T:0.06 Consensus pattern (7 bp): CAAGCGG Left flanking sequence: Indices 6878413 -- 6878912 ATAAGGGTTCGTCTGCGTCTGGTGCAGCAGCTGCTTCACCAACTTTACCAAGCGGATGACAGTTC AGAGGTGCACGAAAGGATTGCTTATCTTTTCGAAATGTCCAAGCGCTGTTCGTTTCTCCTGGCGG AGTTAAACGGAGTTTTTGGATTCGCCGCAGCTGCTGGTATCTTTTATGATTTCACTATCATGACC TGCTTCGTGTACGTTATCTGCCAAAAGCTGCTGGAGAGAGAGCCCTGGGATCCCGAGTACGTGTA CATGTTGCTGCACGTGGCCATACACACCTACAAAGTGGTCATTACTAGCACCTATGGGTATTTAC TTCTGCGAGAGGTGGGTGACCTTATTTCCGTATGCAGAAACTTGCATTTCGCATCTCTATCTGGT TTTCTCTAGAAACGCAACTGTATGCATTTGTTGAGCCAATACTCGCGATACTTCTCCGGACAGGA TGTGGCTCGCCGGAAAACGGAGGACTTTCAGCATTGGCGCATGCA Right flanking sequence: Indices 6878930 -- 6879429 TGGTGGGCAGCACAACCTTGCTAAGTGTTTCTACCATTTACCTGGTGGGTGATACCATGAGCCGC TCGGAAACCTGCCTGATCTGATCTTTTACTTATCCTGGCAGGTGTACAACGGAATGGCCAACTAT GTGATTATCCTGGTGCAGCTGCTATTTCAACAACAGCAAATCAAAGATCACCAGTTGACATCGGG CAAAGATGTGGACATTGTGGGCCCAATGGGACCCATCACTCACATGGATTGAAATAGTTGCAATT ACATTGAAAAAAATTAGCTTATCTTTATTACGTATACTACGTATCTTAACACGTTGCAATAAAAC GGTTTGGTTAATTACTTCTTTATAGTTCAGCTCCGAATTAAAACACACTCAGATCATCATAAAGG CGTTTGACAGTTTTGGTCCTGGCGCCTCCTTCGGTACTGATTGCCACTCAAATCCGTCGACGAGG ATTTTGATCGCCGGCACAAAGTCGATAGAGAACTCATGGTACTTT Found at i:6879821 original size:7 final size:7 Alignment explanation
Indices: 6879805--6879821 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 6879795 ATAAGTAATA * 6879805 TAACATT 1 TAACAGT 6879812 TAACAGT 1 TAACAGT 6879819 TAA 1 TAA 6879822 GTATATGAAT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.47, C:0.12, G:0.06, T:0.35 Consensus pattern (7 bp): TAACAGT Left flanking sequence: Indices 6879305 -- 6879804 AGATCATCATAAAGGCGTTTGACAGTTTTGGTCCTGGCGCCTCCTTCGGTACTGATTGCCACTCA AATCCGTCGACGAGGATTTTGATCGCCGGCACAAAGTCGATAGAGAACTCATGGTACTTTGATTT GGCGGTAATGTTATGACAAATTTTTCTCGTCGATACCGCAAATGGTAGCATCTCATCCTGCAGCA ATGGGACTTCAAAAGGATGCATAGTAAGAAATGATTAAGAAATCGATTTGTTATCTCATCCTATT ACCAGAATTGAAGCTTTTAGAAACAAATGTGGAGGTCAAAAAAAACAGTTAGCTTAATTTTACTA AAAGGCCATTATTCAAGACATTCTTTACATAGAAGTTTTGTTATTCTGTGATTTGTTAACGTTTT TGAACTTGGTTTTAACATATATGTAAGGGGATTAGATACATCACCTTTGCGCTTAAATGTTGATA ACGATCCTTTGACAAATACATACATACATGCATACATAAGTAATA Right flanking sequence: Indices 6879822 -- 6880321 GTATATGAATACTGTCAGTTGATATCAAAGCGACTTATGCTGGTACAATCTTTCGAATTGAATGG ATGTCTTTAGAAAACTTTAGTTTGGGTTTAATCAATGTTGCAAATATGCCAATTGGCTGGGTCAA CACAAAATACAAAATAGTTCCTGGGGGTCAATCAGGTGGGTGTAGAATTAAGTAAATATGTATTG GTTGCAGATTGCATCAAAACTCCGTTAGGCGGTGTTCATATAAAAATCGCCTACATTAGGTATAC GCATACCAATGGACTGAGTATATACATATGTATATTTGAAGTGTTTACATATATAGCTGTATGTA CATACATATGTATATGTATGTATGTCTGTAGTATATACTGACGGCCGCATGTATATGCATGTTAT ACATATGTGCACACGCAAAGCGTTCGCCTACTCCGCAGCCCGGACATCGTTTATCGATTTGCGAA AGGCAACAACACACAGCGACGGCAGCTACTACAAAAACAATCAAC Found at i:6879965 original size:7 final size:7 Alignment explanation
Indices: 6879953--6879967 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 6879943 CTGGGTCAAC 6879953 ACAAAAT 1 ACAAAAT 6879960 ACAAAAT 1 ACAAAAT 6879967 A 1 A 6879968 GTTCCTGGGG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.73, C:0.13, G:0.00, T:0.13 Consensus pattern (7 bp): ACAAAAT Left flanking sequence: Indices 6879453 -- 6879952 AATTTTTCTCGTCGATACCGCAAATGGTAGCATCTCATCCTGCAGCAATGGGACTTCAAAAGGAT GCATAGTAAGAAATGATTAAGAAATCGATTTGTTATCTCATCCTATTACCAGAATTGAAGCTTTT AGAAACAAATGTGGAGGTCAAAAAAAACAGTTAGCTTAATTTTACTAAAAGGCCATTATTCAAGA CATTCTTTACATAGAAGTTTTGTTATTCTGTGATTTGTTAACGTTTTTGAACTTGGTTTTAACAT ATATGTAAGGGGATTAGATACATCACCTTTGCGCTTAAATGTTGATAACGATCCTTTGACAAATA CATACATACATGCATACATAAGTAATATAACATTTAACAGTTAAGTATATGAATACTGTCAGTTG ATATCAAAGCGACTTATGCTGGTACAATCTTTCGAATTGAATGGATGTCTTTAGAAAACTTTAGT TTGGGTTTAATCAATGTTGCAAATATGCCAATTGGCTGGGTCAAC Right flanking sequence: Indices 6879968 -- 6880467 GTTCCTGGGGGTCAATCAGGTGGGTGTAGAATTAAGTAAATATGTATTGGTTGCAGATTGCATCA AAACTCCGTTAGGCGGTGTTCATATAAAAATCGCCTACATTAGGTATACGCATACCAATGGACTG AGTATATACATATGTATATTTGAAGTGTTTACATATATAGCTGTATGTACATACATATGTATATG TATGTATGTCTGTAGTATATACTGACGGCCGCATGTATATGCATGTTATACATATGTGCACACGC AAAGCGTTCGCCTACTCCGCAGCCCGGACATCGTTTATCGATTTGCGAAAGGCAACAACACACAG CGACGGCAGCTACTACAAAAACAATCAACAGCAGCTACAACAGCACAGCTATACCAGCGGCGGTA GGCCGCTCTCCCCCGCTCGCCACCCCCCGTTCCGACCAGCCAGCTAGCTGGCATAGACCATAGCC CATGGCCCGTAGCCCGCCCCCTTCCAGGCAACAACACCACAGACC Found at i:6881665 original size:8 final size:8 Alignment explanation
Indices: 6881652--6881673 Score: 37 Period size: 8 Copynumber: 2.8 Consensus size: 8 6881642 TGCTCCATGT 6881652 ACATACAA 1 ACATACAA * 6881660 ACATACAC 1 ACATACAA 6881668 ACATAC 1 ACATAC 6881674 GTATGTATGT Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 8 13 1.00 ACGTcount: A:0.55, C:0.32, G:0.00, T:0.14 Consensus pattern (8 bp): ACATACAA Left flanking sequence: Indices 6881152 -- 6881651 CGCAGCCAAAGCGCACAAGCACACACACACAGGCGCCGTCGTCGTCGCCTGGCTAAATATTCGCC AATGTGTGTGTGTTTGTGTGTTAGTTTGGAAGGAGCCAAAGCGGTAGGTAAGTTAACTGGTCGTA GGTTCGCAACAACAAAACCAGAGTCGCAGCAGCACCAGCAGCAGCAAAAGAAAAAAAGAAGAAGA GGACGGCCAGTGAACGCGGTGAACGGGGGGGTTGCTGAGGAACGCGGATCGATGGAGCCATTTGG CTGAACCAGAAGCGAGTCCAGCAGCAAGAAAGGGGGCCCAGCGGCCGATTGTTCGCGCTTAAAGA ATTTAAAGCTGAAGTAGCATCAGGAAGAGATATTAAAGGCATTTTATTTTTAAGCAACAGTAATT GGTTGCAAATATTTTATACTATGTACTGGCTTCCACGATAACAGGGTATACGATAACTTGGTAAA ATTGTTCACAGGTTTTCAGGGTACCCTCCACATGGTGCTCCATGT Right flanking sequence: Indices 6881674 -- 6882173 GTATGTATGTTCTTACGCCCCTGAGCAGGCTCGCCCACTCTCCAATTTTGGCCGTCCTGCTCCCC CACCCTTGCAACACTCAATTTCAAACAAACCTCTTTTGCGCTCTTCTCACATCTTTCACTCTCTC AAAAGTGGCTGTCCTAGCGGTACCAAAAGCTCGGTTGAGACAAACTGATAAGGATAAGCAAAGAT CACTCTCTTGATGCTCTCTTTGCACAATTCTCAATCGTTATGATATCCTTTCGATATGCCATTGC TTATGCTGTGACCTTGAACTTGGCTGGACGAAACGGGCACGTGACAATCAACAGTTCCATCTTCT GCATTTTAAAATGCATTTAAGCAGCTCTTGCAGCACATTTCGCCTGCCACAAAGTGCGGGCAGCA TCGCAATTTTGTCGCGCCTGGGTTTCGTGTCCACACATATACATATGTATATGCATGTATGTATG TACACAAATACATACCTAGCACTATAGTGCAACTAGCCCTCTGGT Found at i:6882676 original size:8 final size:8 Alignment explanation
Indices: 6882663--6882678 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 6882653 CACAGAACGG 6882663 TAGTCGGA 1 TAGTCGGA 6882671 TAGTCGGA 1 TAGTCGGA 6882679 CGGTTGGCAG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.25, C:0.12, G:0.38, T:0.25 Consensus pattern (8 bp): TAGTCGGA Left flanking sequence: Indices 6882163 -- 6882662 AGCCCTCTGGTTCTTCTTTCTATGTGGTTGCTGTTGCTGCTTTTTTCTTGTGGGCGGTTAACGCT CAAGCGGTGCGAACGCCCATGTTGCGCCCCTTCCCTGCCCTCCCACCTCCGCCAGCTCTCTGTTT TTTCGTCATGATGAGCTTGCCTGGCTGCCTGCTTGTTCTTGTTCTTCTTTACACGTCCTCCAACG ACGTTCGCTGTTGGGGCCCCGCTTTTGCTGTTGCTGTTGTCGCTGGTGCTGCTGTTGCTGTTGCT GGTTGTTGTTGGTTCGGGCTGTCTATGCATGTATGTGTGAGTGTGCGTTCGTGTGTGAGTGTGCG CGCGCGGCGGTAGGTGGGGGCGGGGCGGGGCAGGGTGAATCAGGGGCGGTGCGGCATGGGGGAAC GGTGGAGTGGGGAGCGTACTTGTGTGTGCATGCAGCTCTCGGCGGCGTCGTCGTCGTCGTCGTTT CATTCAAGTGTCCAACGTTTGCCGGAGCGGTCGCACACAGAACGG Right flanking sequence: Indices 6882679 -- 6883178 CGGTTGGCAGATTCCGATTTTTGCGCTCGCTCTCTCTCCCTCTCTCTCTCGTTAGCCCGCGCTCT CTCCTGCTGTGTACTGTTAGCAAGGAGGCGACCGAAAAATAAGAAGCTTGCCGAAACCGTTAGCA AAGCGCCGTTAGCATGAAGGATGTGAAAGTGGCGCGCGCAATTAGCGAGTCCTCGACTACGTCAG ATAACACCTCCGATTTCATCGAGATCGTAAAGAAGTACGATGTGGTGTACAACAACCACAATCCG GATTACAAGAACGTTGAAGTGAAGCTGAAGGTTTGGACGCAAATCGCCGATGAGATAGGTCTTTC AGTGGGTAGGTAATAATTACAAGTAGCACCACCCCCTCGTCAGCCCGGCCCACCACCAAACCCCC TTCCACCCAGCAAATAAGAAGGAGGCGCAGGAAATTGAATTACGTAGAACCCACGCACACTGCTG CACTGTATATACATATGTATATGCATATATACAACCTTTGTATAT Found at i:6883735 original size:7 final size:7 Alignment explanation
Indices: 6883723--6883737 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 6883713 GTTCCCCTCG 6883723 TAAACAT 1 TAAACAT 6883730 TAAACAT 1 TAAACAT 6883737 T 1 T 6883738 TGTTACCGCC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33 Consensus pattern (7 bp): TAAACAT Left flanking sequence: Indices 6883223 -- 6883722 TCGTACGCTGGTACATATACATATGTATATAGAAACTGTACGTTCATATGTGTGTGTGTATGTCA GTTGGAGTGCGGTCGGCAAATTGCAGCGAGAAGCAGAAACAAAAAAAATATAAGGAAAACACACT GGCACGCAGAAAAAACAAACAAAAACAGTCGATGAGCGAAAACTGCGCGCTCTCTGATGCTGAGA GAAAGAGCGAGAAAGATAGTGAACAGGCCGGAAGGGGCGGTTGTGGGAGTGGGTTGGCGAGAGCT TTTCAAAACAAAAACATTGCGCACGGTGTTGCCAGGTGCGAAACTTTTTCCCAAAACAAGCAACC ACCTGTGCTGCAATTTTTAATAATATTATTATTATTATTATATTATAATATTGCCTATATAATTG TTATTTTAACTTTTAGTCAAACATAAATAAATGTGTAATATCATACATTAGTTATATTTTAATGT GTATTTTGTCTAAATAGAGCACCATGTATTCTTTAGTTCCCCTCG Right flanking sequence: Indices 6883738 -- 6884237 TGTTACCGCCACGACGGTTTAATTTGGGATTAATTTTAATCTAGCATAACTTAAATGCTTTTGGA GCATACTTCCAATAAGAGCCCCAGAAGATACTAAGCATCGCTTTGCTTATATGTGTGTACAATAT ACAAAAGTCTCATAATTTTTAGAAATGAAACGTGTGTAAATGCTTTTTTTAATCTATTATAATAT CTTACGAGCAATTCAGATGATAGGAATACCTTTTTGAATTGAATTTCAGAATATCACGATTAAAT TTCTTTTGATTGCGGCTTTATATTCACCATATTGGCGAGCAGATCGCTTATTGCAAATTCTAATG AATTATATTATTAAAAACTCCAAACTGCATTCGCTGATTAAGTATTTCGTTGGTCATGAACGGCG GTCACACTGTCCGAAATTTAAATTTTAAACTTGACCCCACTATACATTTGTACATGGGCTAATGG AAAAAATTAAAAGAATATTTAAATCTGTGTTGAAATATGCTTTTG Found at i:6885530 original size:9 final size:9 Alignment explanation
Indices: 6885518--6885536 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 6885508 CCTCCGCCGC * 6885518 CGCCGCCAG 1 CGCCACCAG 6885527 CGCCACCAG 1 CGCCACCAG 6885536 C 1 C 6885537 CTCCAAGGTG Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.16, C:0.58, G:0.26, T:0.00 Consensus pattern (9 bp): CGCCACCAG Left flanking sequence: Indices 6885018 -- 6885517 TGCTGCAGTGGCACCGCTCAGTTCGATGACTCCACCTGCCACCAGTGGCAGTAATTCCGCCGTAG TCTTGCCCCTGCCCATCTCACCCGCATCCTCAGTCGCTGCCGCAGCTGCTGCTGTCAGCAAGGCC AATGCAAATGCCCTGGCCTCTCTGGCTAACCATCTGCCCATGGGCTTGGGCGTGAGCGGACTGGC CCAGCAGATGTTCCCGCTAGCCACGCTCAAGGCGGCGGCAGTGGCTGCTGGTCTTCCCCTGCCAC CTACGATCACGCCGCCTGGTTGCAGCACCGGCAGCGCAACCAACAGCAATGTCGGTTGTCTGATC ATCGAGCCGCATCTCTTTGCGGCGGCGGACAACTTCAAGAAGGAACTGACAGCGGCTGCGGCAGC TGGAGCACCTTTGGGATTGTTCCAGAACCTGGCCAACCAAGTGCAGAACGCCAATCGTTTGAACG GCAGCTGCCCGAGCTTACCCATGGGTAATCCCACTCCTCCGCCGC Right flanking sequence: Indices 6885537 -- 6886036 CTCCAAGGTGCGAAGGGTACAACCTTCGCCGCAAACCACGGCCATCAACCTAAGTTGCTCCGGAG GGAATTCCGTACAAACGCAGCAGCAGCAGTCAATGCAAATGCCACAAATTCAACAGCAACAACAG CCGTCGCCCGCCAAAACGCGTAAGATTTGCGATCCGCGTTTTCCGAGCGATTGGGACGTCTCTGC CGTGCTACAGGCCAACAGAGAACTTGACGCAAACACTCTTTTCTTCTTGAGTCTGGCGCGGCAGG TGCGAGCTATGCCCATGAAATTCCAGTCGCTCGCCAAGATGCGTTGCATGCGAATCGTCAGTGAT TTGGAGCTAGAGCTGGAGAACTTTGATTGCAACGGTGGAGCGCCACCGCCGGATGATTCAGGCGG AGGAGGAGCTGGGAATCTCAAGTACTGCAGCATAGATACTCCGCCACCGCCGCCGCAGGACGGCT CCGTGGTCATACCCCCGCCGCCAGTCGGCCCCGAGGGCTCCACGG Found at i:6887393 original size:8 final size:8 Alignment explanation
Indices: 6887380--6887395 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 6887370 CGTATACATA 6887380 AAAAATAT 1 AAAAATAT 6887388 AAAAATAT 1 AAAAATAT 6887396 GGGATTCATT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25 Consensus pattern (8 bp): AAAAATAT Left flanking sequence: Indices 6886880 -- 6887379 CGGCGGCAATCAGGCAAATGGCGAACAGTTGACGGGACATCTTGATCAAGTTATGAGGTGGTTTT TATTTAGTAATCAATGGAATAGGCGGAACTCTACGGCTATCCAACTCGGCGACCTGCGACTTTCT TTCTCTCTGGAAGCGAACGCCACGACAGCACCATACATACGTCACGTCACTTGACAGCTACGAAA ATTGCCGAAGTCGTACCAGTTCGATGGTCACACTGGTCGTGACCAGGGATGGCAACGCTCAGTCG AGAATAGCTACAAAATAGCTAGTAGCCCGTGGTAAATTTTTCCGATTTTTTACTTGTTATATCTA AAAATACAGTTTTAGAAAGCGGTTTTTTGTAGTTTCCTAATGACATCTATATGTTAAGATTTCTC CGGGAATGTTTGTCGTTCGAATATGATAGCAATTAGTACGTATACGTAAATGTTATAAAATTCAT ATAAAATTTGTATATACAAGTATTAAAAATAAGTGCGTATACATA Right flanking sequence: Indices 6887396 -- 6887895 GGGATTCATTTTATTTGGAATAAAGTTATTACTAATGATGTCAGTCCTGTCAAAATAAATCTTTC CTAATTATAGGGGCATTGAGATATGTAGACTTAATTTCCTCCCATATCAATTCAATTTCTAGCGA TTTCAATTTCAAATATATAATTTGAAAATATCGAATTTTAAATAAAAAACAATTATATTAAAGTT AAATATTAATAAATTAAATTAAATTTATAAATAAAAATATAATGACAAATAGAATTCTTCACCAA CAGGTTAAATTTTTGTAGTCTTACTTTGATTAAAAGACTAAAATTCTTATTAAATTATATTTATA CAAAATTGTAATGTTTTAAGGAAAAATTGCTCAGCTATGATCGAGTACCGAATGCAATCCATCAC TTTGGAGGATTCTGCTTTAGATCGCTATTGCGCTGATATTAAAAACATCAAAGTGAACTTTGATC AAATTGGTGGCTTAATTTGTACTTAGGCAAATACCCAAAGTTCCT Found at i:6889624 original size:7 final size:7 Alignment explanation
Indices: 6889609--6889628 Score: 33 Period size: 7 Copynumber: 2.9 Consensus size: 7 6889599 CGCTTTCGTG * 6889609 ACGGATC 1 ACGGTTC 6889616 ACGGTTC 1 ACGGTTC 6889623 ACGGTT 1 ACGGTT 6889629 GGCGGCTCGT Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25 Consensus pattern (7 bp): ACGGTTC Left flanking sequence: Indices 6889109 -- 6889608 AGTTTTTCAACAACTCGCAAAAATAAATATTACAATAAACCTAAGTTTTTAAAAGTTTTTCATAT AAAAAACGAACCAATTATTAACAGGATACATTTACTAATCGAGTATAATAGCTCATTTGTAAGGG ACATTACCTTTTTTAATTTTTCCTAGATCACTCCAATTTCTTTCAGTGTGCTTCGGTGGATGGTT GTCTGACGTGTGGGTGTGAGCAGGAAATGGAACAAAGAACCGAACTGTAAGGAGAGCCTGAGCCA GCATAACAGGCGACTCCTTGCCAACGTTGCGATTTTGTTGATTGTTTGTTGGCAACATAAACGAA CCTCCCCCCCCCACCCAAAAAAAAACCGATTCCGATTCCGATTCCGGTTCGGAGTCCGAAATTCT TCATTCACAAAACGCAGTCGGTGCAGGGCATTCGAGCCAAGTGGACGTGGAAGCCACCTCGATCT CGGCCAGACGGGGATCGCATTTGCAAAGTGGCTTTCGCTTTCGTG Right flanking sequence: Indices 6889629 -- 6890128 GGCGGCTCGTTGGTGCCTCGCTTGTGGGTTTCCATTTCAGACCGTCAGCTTTGTTGACAAAGTTA TTGCCTCCGGCTTAATGACTTCGTAATTGATTTGCATTCGATGTGCCACATTGATTGGCAATTGA AACGTAAGGCACCCTTCTTGCAACTCCGGCCCAAAAGCTCTTCACCATCGAGGGCTCACTCCATT TCGGTAACCGCTCATTGTCACCGTTGCTAATCAAGGTTATCAAGGATAAACTGGCTGTCACTATG TCGCTGTCTGTGGCCAGCCGTCGTCGCCTCCAGACGACAAACGCATCATCGTCCGTGGTGAACCC ATCCTCATCCACTTCCGGCGGGCGCTATCACCTGCCGCTGTCCGTGCGGAAGCAGCACTCCTTCA TCGAGCCCACGTCCAGATTTTCGACCCAGCAGAGAGGCTACCTCTCCAGAGGTCTCTCCGTGGGC CGATCCATCGAGAACATCCGCCAGAAGCTCTATCCCGTGGGCAGG Found at i:6894474 original size:8 final size:8 Alignment explanation
Indices: 6894461--6894484 Score: 41 Period size: 8 Copynumber: 3.0 Consensus size: 8 6894451 GCGTTTGAAC 6894461 ATTATCCG 1 ATTATCCG 6894469 ATTATCCG 1 ATTATCCG * 6894477 ATTTTCCG 1 ATTATCCG 6894485 TGAGTGAGAG Statistics Matches: 15, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 8 15 1.00 ACGTcount: A:0.21, C:0.25, G:0.12, T:0.42 Consensus pattern (8 bp): ATTATCCG Left flanking sequence: Indices 6893961 -- 6894460 TTACAGTAATTAGAAGCGTTGGAGACTCCTTGATCGCTCCGAAACAGCCCAGCGAAGCTATCAGG AATATGATCAGGCCCGTGACTATGAGGACAATTGGCGGTGCAAGGACTCGACCTTCGACAAAGTG ATTGAATTCATTCACATCGGCCAGGACAACGGCACCAGCAATAAGAATTCCCAGGCCGGAGATCT GTAAGAAATTTTAGTACCTTCGATTAATCGAATCGACCTCCAATAGAACCGTTAAGCAATTTAGT TAATGGCTTCCAATCATGTCCTAATTTGCTATGGCAGGCATTTATATTTACATTCCCTATTCTAA TTGAACGATAAAAATCGCCCACGACTTAGTCAATGGCATTTCCATGTTCAAGTCCGTGCCGTCAT TGAAAGTCAACTGCTTGCGCAGTTGGTCAATGCGAAGGACACCCGATGTCCATGTCCTTTGGAGC ACGCATACATCACTCGCATGTCGTTACAGGCCATCGCGTTTGAAC Right flanking sequence: Indices 6894485 -- 6894984 TGAGTGAGAGTGCCATTTTCCAGCGATACTTATCTAAATGAGGCAGGCGAACAAGACTCCAAGCA CAAGCGTAATTATAGTGCTTATGGCGAATTAGAACTAATTACGAGCAAAAATAAATCTGGTAGAA TGTTACGTTTGGACGGTTCAATCCGTTTTCATAATTGCAGTAACAGTTTGCACCTCGAAAATTCC CAGAAAATAGTTATGTCATTTCATAAAATTTTATGATTCTTTTTTGAAATTAATATCAATAAGTC AATTTGATTGGCATATGATTTGTTAGAAACAAAGTGATTTGCAGTATGATGCAATGTATTGTATT TAGCATAATATTCTCAGTATCCTTTAGATATTTTACTCATATATCATATCACTTGCACTTACCGC AAACAGCACATTAAATGCGAATAAGACATATTTAATTAAACTCGGACCGCAAGAACGCATTTTGA GATTCCTTTTGGGGCGAAGCACTAATTCAAGTTATTTCAACTTTA Found at i:6895147 original size:7 final size:7 Alignment explanation
Indices: 6895135--6895151 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 6895125 TTCTGTTGTG 6895135 GCCACTT 1 GCCACTT 6895142 GCCACTT 1 GCCACTT 6895149 GCC 1 GCC 6895152 GGGTTGGTGG Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.12, C:0.47, G:0.18, T:0.24 Consensus pattern (7 bp): GCCACTT Left flanking sequence: Indices 6894635 -- 6895134 ATCCGTTTTCATAATTGCAGTAACAGTTTGCACCTCGAAAATTCCCAGAAAATAGTTATGTCATT TCATAAAATTTTATGATTCTTTTTTGAAATTAATATCAATAAGTCAATTTGATTGGCATATGATT TGTTAGAAACAAAGTGATTTGCAGTATGATGCAATGTATTGTATTTAGCATAATATTCTCAGTAT CCTTTAGATATTTTACTCATATATCATATCACTTGCACTTACCGCAAACAGCACATTAAATGCGA ATAAGACATATTTAATTAAACTCGGACCGCAAGAACGCATTTTGAGATTCCTTTTGGGGCGAAGC ACTAATTCAAGTTATTTCAACTTTAGATCAATTCAAATACAGAATCGCTTTGGTGCGTGATATGA CTTAGTGATCCAGAGCGATGGCCCAAATCGACTGACCGCACTGGAGTTTAACCGCGAACTGACCG GAGCGACGGTCCGGCTGGGCTTTAGAAGGGCCCGGTTCTGTTGTG Right flanking sequence: Indices 6895152 -- 6895651 GGGTTGGTGGTGGCAACGGATCCGGATTGCGGTTGGGGTACGGCTAGCAATGGGTAGCGGCGGAA CAAAAGCGAAAGCGAGTGAAAGTCTTGGAGGCCCGATTCGAATTTAGGCCAGGCATGATTAGGCT GGAATCGGAATAGGGATCGGGCATGGGCCTATGACGGACTATATGGACTATAGGGGCTGGAACTC CGTGCTGGCTTATTTCACTGTTGATTTAGCATTCGATACCAAAGAACTTTGACCAAAGCAGCGAG GCGAGGCGAGGCGATTGGTTGCGTTTTGTGGGTCGCCCGGGGCTTACCTCACTTGCCTCACTCAC GGCTCCATTCGCCATCTCCAGCTGGATTCCGGGTGGGTCATTGCACTTATTACCATAAAAATTTA GCTGTGCGCCCACGTCTATGTGTTTCCCTTTAAAGTTCGGCACTTAGCACTTGGAACTCGACCGG GCCCAAGGCGAAATTAATTGCGTGCTTTCGTGCGCGGCAAAGAAA Found at i:6895472 original size:9 final size:9 Alignment explanation
Indices: 6895454--6895473 Score: 33 Period size: 9 Copynumber: 2.2 Consensus size: 9 6895444 TCGCCCGGGG 6895454 CTTACCTCA 1 CTTACCTCA * 6895463 CTTGCCTCA 1 CTTACCTCA 6895472 CT 1 CT 6895474 CACGGCTCCA Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.15, C:0.45, G:0.05, T:0.35 Consensus pattern (9 bp): CTTACCTCA Left flanking sequence: Indices 6894954 -- 6895453 CGAAGCACTAATTCAAGTTATTTCAACTTTAGATCAATTCAAATACAGAATCGCTTTGGTGCGTG ATATGACTTAGTGATCCAGAGCGATGGCCCAAATCGACTGACCGCACTGGAGTTTAACCGCGAAC TGACCGGAGCGACGGTCCGGCTGGGCTTTAGAAGGGCCCGGTTCTGTTGTGGCCACTTGCCACTT GCCGGGTTGGTGGTGGCAACGGATCCGGATTGCGGTTGGGGTACGGCTAGCAATGGGTAGCGGCG GAACAAAAGCGAAAGCGAGTGAAAGTCTTGGAGGCCCGATTCGAATTTAGGCCAGGCATGATTAG GCTGGAATCGGAATAGGGATCGGGCATGGGCCTATGACGGACTATATGGACTATAGGGGCTGGAA CTCCGTGCTGGCTTATTTCACTGTTGATTTAGCATTCGATACCAAAGAACTTTGACCAAAGCAGC GAGGCGAGGCGAGGCGATTGGTTGCGTTTTGTGGGTCGCCCGGGG Right flanking sequence: Indices 6895474 -- 6895973 CACGGCTCCATTCGCCATCTCCAGCTGGATTCCGGGTGGGTCATTGCACTTATTACCATAAAAAT TTAGCTGTGCGCCCACGTCTATGTGTTTCCCTTTAAAGTTCGGCACTTAGCACTTGGAACTCGAC CGGGCCCAAGGCGAAATTAATTGCGTGCTTTCGTGCGCGGCAAAGAAAGTTGTAAATGCTTTCTC TTTCTCTGAGGACTGTGCGAAATAATTAAAGACGCCCAGAAGTATGCCACAGTCTTTCGGATGAT GTTAGTGTTGCGTGTCGGGAATTATGGCCCTAGGTTTTCTAGAATCCCACTGTTTGACCCATTCT CTGGCTGAGCCTATCTGGTCGAAGAAATCTAGAAAAAATAAAAGCAAAAACTGTTGCTTGACCAT TAGTTGCGGCGGCTTGGAATCAAAATCCCTGGGAATTGGAGTTCTCTGAATGATTGGAGCACAAA TATTTTCTGAAGGCTTCCGCAATTTAAAGCAAATTGTGGCTCTAA Found at