TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_2R assembled 2004-3-18 md5checksum:9f4c91a2cad3c68020b05fff1adf27ee Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 20766785 ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28 Warning! 200 characters in sequence are not A, C, G, or T Found at i: i:2599429 original size:7 final size:7 Alignment explanation
Indices: 2599417--2599430 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 2599407 ATTCGTAGAG 2599417 CCAGGAC 1 CCAGGAC 2599424 CCAGGAC 1 CCAGGAC 2599431 GCGAACAATA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.43, G:0.29, T:0.00 Consensus pattern (7 bp): CCAGGAC Left flanking sequence: Indices 2598917 -- 2599416 AGCTTAATGGGCGGGGGCGGGGCAGGCAATTGCCGCACTGCGACTGTGACTGTCAATTGATTTTA ATTTAAGCCCAGGCGATTTGCTTTAAATTGCCAATTATATTTAGTCGCTAGATATACGATAAGGC CGAGAGCCAAAATGAAACCGAACTAAGCCGGCAATTTAGTTTGACTTTTCCGCGCGCCTTTTTCT GTTTGGTTTCTTGTGTTTCTTGTGTTTTTGTGCATTGTAAATAAGCGAGTAATTGGCCGGCTACA GACAACAGTGATTTAATCTCGGCCTGAGTTGCAGACCAGTAATGCCAACACTTTGGAGCACCCCC CGTCCACCACCCAATCCATCGATTCCCACACAATACCATTCCATACCATGCCACACCATTCTATA CCTTCTCCGATTTCCAAACCGCTTGCACTTGCTCATTAAAAGCGCGCCACACTGACCTCAAAGAG CTTAACTCTCGGCCCTCGGACCTCGTCCTTCCCCGATTCGTAGAG Right flanking sequence: Indices 2599431 -- 2599930 GCGAACAATACGGAAAAGAATTAAAATAAATTGCGAAAACAAACGAAAGCGGGACAACGGAGGGG CGCGGGAATGGGATCGTCGAAGAGTTAACAACTTAATTGGATTTGCATGTAATTTTACTGTCCAG ATTGAAAAAATCGACAGTTGTTGGCAGTTTGTTTGCTGGCCCCACAATCTGAGATAAGCGCAGTA AGCGGGCCAAAACCGAATCGAAACGAAAATAAAAGGACGTCTGTCGGGGCGGCAGAAGTCGCGCG CAAAACGCACGAAAAGCGCTACTAAAACGCATGCAAAACGCTAATATTCATTTTGTTCAACGTTT AGTATGTTTACTCCATTTGCTAAATGCTTAACAATTGAACAGCAAACATCTTGATATCTCTTTGA AATTTTCGTTTTCAAGAAGTCAAAACTTTATTATGATTGCCTCGAAATTCCTTATTAATTGATAA ATTAAGCAGCACTTACCTTAAACCAAAGTTGTTTTACAACCAAGT Found at i:2601200 original size:7 final size:7 Alignment explanation
Indices: 2601180--2601201 Score: 37 Period size: 7 Copynumber: 3.1 Consensus size: 7 2601170 AAGCCAAAAC * 2601180 CTGAGAA 1 CTGAGAG 2601187 CTGAGAG 1 CTGAGAG 2601194 CTGAGAG 1 CTGAGAG 2601201 C 1 C 2601202 CGTGTGTGCA Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 7 14 1.00 ACGTcount: A:0.32, C:0.18, G:0.36, T:0.14 Consensus pattern (7 bp): CTGAGAG Left flanking sequence: Indices 2600680 -- 2601179 AGATACCTACACATCTTGTATTCAAAAATGAGTTGCGTACTTATCTCCGAAAAGTGAAAGGAATC ATACACATTCGAGCTAGTCCTCGATCGACCCTCGTCTGATTTTTGTTTTGACAGTGAGCACAACT TTTATCATCTCGACTTGAAAATTAAACATGTCAGCGCTTTCAGTGGACCCTGATAAGGTTGGCTC TGCTGCGATCCTGCGCCTGAAAACTGGTGTTGCGAATCTGGCTACGAATCGAGTTTTGGAGACCC TGCCCCATTTATTGCGAGTTGGGGTCCAGGAATCGGGAATTACGCAACCGAAGCCTCGCCGCGCC TTTTATGGCATGACTGCTGATGTGGTCCATAAATTTGCCTGCCTCTCTGATTATTTCTATAAAAA TAAATAAATACTCATAAGCAGTTCATAAGTCGCAGAGCTCTTTTGTTTTTGCAATTGGGTTTTGC TTTATGGGACGGGACTGCGGGGCTTGTTAGGCCGAAAGCCAAAAC Right flanking sequence: Indices 2601202 -- 2601701 CGTGTGTGCATGTGCCATAAATTAACGTCAATTGGCTGGCGGTGCGGCGGGTACAGATACAGATA CAGCCCGGACCCGGGAGCAGATACAGATACATTTGCCGACGCAGTTCGCAGTTGGGCAAAGGAAA AGGAAAAGCTGAAACTGAAAAGCTGAAAAACTGAAGGAGCTGCAGCTCGGGCGGCGGCGCATGCG CTCATAAATCTTTTTTTTTTGGCTATGCAACCGCAACGGAGCGGTCAGCAGAGTTCATGTATTCA TTTCTGACAAGCCCACTTTTAAGTAGAGGTGCTCGGGAGCCTGGGCTGAATCTGAGTCCGATTCC GAGTCCGAATTCGACCCCAAGCACTGTCAATTGGGTGCATTTAAATTGTGAAATTAAGGTGGAAA TTGGCAACAGGAAACATAAAGAAAGAACCAGGGGCCAGAGGCCAATTTATCGGCATTGTTTCCAC GTCTCTGCCTCATTTTGATTGAATTCAAATCGCGCTGGCCACAGA Found at i:2601318 original size:7 final size:7 Alignment explanation
Indices: 2601306--2601319 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 2601296 CATTTGCCGA 2601306 CGCAGTT 1 CGCAGTT 2601313 CGCAGTT 1 CGCAGTT 2601320 GGGCAAAGGA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.29, G:0.29, T:0.29 Consensus pattern (7 bp): CGCAGTT Left flanking sequence: Indices 2600806 -- 2601305 AACTTTTATCATCTCGACTTGAAAATTAAACATGTCAGCGCTTTCAGTGGACCCTGATAAGGTTG GCTCTGCTGCGATCCTGCGCCTGAAAACTGGTGTTGCGAATCTGGCTACGAATCGAGTTTTGGAG ACCCTGCCCCATTTATTGCGAGTTGGGGTCCAGGAATCGGGAATTACGCAACCGAAGCCTCGCCG CGCCTTTTATGGCATGACTGCTGATGTGGTCCATAAATTTGCCTGCCTCTCTGATTATTTCTATA AAAATAAATAAATACTCATAAGCAGTTCATAAGTCGCAGAGCTCTTTTGTTTTTGCAATTGGGTT TTGCTTTATGGGACGGGACTGCGGGGCTTGTTAGGCCGAAAGCCAAAACCTGAGAACTGAGAGCT GAGAGCCGTGTGTGCATGTGCCATAAATTAACGTCAATTGGCTGGCGGTGCGGCGGGTACAGATA CAGATACAGCCCGGACCCGGGAGCAGATACAGATACATTTGCCGA Right flanking sequence: Indices 2601320 -- 2601819 GGGCAAAGGAAAAGGAAAAGCTGAAACTGAAAAGCTGAAAAACTGAAGGAGCTGCAGCTCGGGCG GCGGCGCATGCGCTCATAAATCTTTTTTTTTTGGCTATGCAACCGCAACGGAGCGGTCAGCAGAG TTCATGTATTCATTTCTGACAAGCCCACTTTTAAGTAGAGGTGCTCGGGAGCCTGGGCTGAATCT GAGTCCGATTCCGAGTCCGAATTCGACCCCAAGCACTGTCAATTGGGTGCATTTAAATTGTGAAA TTAAGGTGGAAATTGGCAACAGGAAACATAAAGAAAGAACCAGGGGCCAGAGGCCAATTTATCGG CATTGTTTCCACGTCTCTGCCTCATTTTGATTGAATTCAAATCGCGCTGGCCACAGACAAAAGAA TGCTTCGCAACTCGGCAGCTCCGCACTTCCACAGCTCCAGCCCAGGAATGTCAAAGTCATTTTGG GCCTGGGAGAGTGGAGGGGCTCGGCCACCGTTTCGACCAGGCCCA Found at i:2601634 original size:7 final size:7 Alignment explanation
Indices: 2601619--2601635 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 2601609 AAAGAAAGAA * 2601619 CCAGGGG 1 CCAGAGG 2601626 CCAGAGG 1 CCAGAGG 2601633 CCA 1 CCA 2601636 ATTTATCGGC Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.24, C:0.35, G:0.41, T:0.00 Consensus pattern (7 bp): CCAGAGG Left flanking sequence: Indices 2601119 -- 2601618 TGCAATTGGGTTTTGCTTTATGGGACGGGACTGCGGGGCTTGTTAGGCCGAAAGCCAAAACCTGA GAACTGAGAGCTGAGAGCCGTGTGTGCATGTGCCATAAATTAACGTCAATTGGCTGGCGGTGCGG CGGGTACAGATACAGATACAGCCCGGACCCGGGAGCAGATACAGATACATTTGCCGACGCAGTTC GCAGTTGGGCAAAGGAAAAGGAAAAGCTGAAACTGAAAAGCTGAAAAACTGAAGGAGCTGCAGCT CGGGCGGCGGCGCATGCGCTCATAAATCTTTTTTTTTTGGCTATGCAACCGCAACGGAGCGGTCA GCAGAGTTCATGTATTCATTTCTGACAAGCCCACTTTTAAGTAGAGGTGCTCGGGAGCCTGGGCT GAATCTGAGTCCGATTCCGAGTCCGAATTCGACCCCAAGCACTGTCAATTGGGTGCATTTAAATT GTGAAATTAAGGTGGAAATTGGCAACAGGAAACATAAAGAAAGAA Right flanking sequence: Indices 2601636 -- 2602135 ATTTATCGGCATTGTTTCCACGTCTCTGCCTCATTTTGATTGAATTCAAATCGCGCTGGCCACAG ACAAAAGAATGCTTCGCAACTCGGCAGCTCCGCACTTCCACAGCTCCAGCCCAGGAATGTCAAAG TCATTTTGGGCCTGGGAGAGTGGAGGGGCTCGGCCACCGTTTCGACCAGGCCCACGTCTGGGCCT CCATTCCTCCGTTCCGACCCTTACTCCTCTGCAGAACAAGTGGCCGCAGCTGTGTAAAATGTTCA TCAAATGAACGCTTTAGTGGCCCCTCCCCACCGGCACACAATGCAACATTTAAACAAACAGGCGG GCACAAAACGATAAGAAAACAGAGGCAACTGTAGTCGACTATCAAGTACCTGTCACTAAGTGCTT TGCTTTCATGGGGCCGCTTCACATCGAATGTGTAAGAAATTTTTTTGGATGGATGTGGCTAACAG AGATTGAGGGTCACAACTAATTGTTAGTACTATTGTACAATGAAA Found at i:2601845 original size:8 final size:8 Alignment explanation
Indices: 2601828--2601845 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 2601818 CACGTCTGGG 2601828 CCTCCATT 1 CCTCCATT * 2601836 CCTCCGTT 1 CCTCCATT 2601844 CC 1 CC 2601846 GACCCTTACT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.06, C:0.56, G:0.06, T:0.33 Consensus pattern (8 bp): CCTCCATT Left flanking sequence: Indices 2601328 -- 2601827 GAAAAGGAAAAGCTGAAACTGAAAAGCTGAAAAACTGAAGGAGCTGCAGCTCGGGCGGCGGCGCA TGCGCTCATAAATCTTTTTTTTTTGGCTATGCAACCGCAACGGAGCGGTCAGCAGAGTTCATGTA TTCATTTCTGACAAGCCCACTTTTAAGTAGAGGTGCTCGGGAGCCTGGGCTGAATCTGAGTCCGA TTCCGAGTCCGAATTCGACCCCAAGCACTGTCAATTGGGTGCATTTAAATTGTGAAATTAAGGTG GAAATTGGCAACAGGAAACATAAAGAAAGAACCAGGGGCCAGAGGCCAATTTATCGGCATTGTTT CCACGTCTCTGCCTCATTTTGATTGAATTCAAATCGCGCTGGCCACAGACAAAAGAATGCTTCGC AACTCGGCAGCTCCGCACTTCCACAGCTCCAGCCCAGGAATGTCAAAGTCATTTTGGGCCTGGGA GAGTGGAGGGGCTCGGCCACCGTTTCGACCAGGCCCACGTCTGGG Right flanking sequence: Indices 2601846 -- 2602345 GACCCTTACTCCTCTGCAGAACAAGTGGCCGCAGCTGTGTAAAATGTTCATCAAATGAACGCTTT AGTGGCCCCTCCCCACCGGCACACAATGCAACATTTAAACAAACAGGCGGGCACAAAACGATAAG AAAACAGAGGCAACTGTAGTCGACTATCAAGTACCTGTCACTAAGTGCTTTGCTTTCATGGGGCC GCTTCACATCGAATGTGTAAGAAATTTTTTTGGATGGATGTGGCTAACAGAGATTGAGGGTCACA ACTAATTGTTAGTACTATTGTACAATGAAATTATTTATTATGTAGTTAAAGATAATTTTCAATTA TAGATAATTGCAAGTGGACCTTTACCGCCTGTTACTCCACTAACGTCTCAGGGACTTTTTTACAA TGTTATGGTGTTATGAATTTCAATTACCATCAGCAGATGTATTTAAGCTGTTATACCAATCAGCA TTATGTCTATAATTTAAAAAGCTGTATGTTAGGTCGAACAATTTT Found at i:2603169 original size:8 final size:8 Alignment explanation
Indices: 2603156--2603173 Score: 36 Period size: 8 Copynumber: 2.2 Consensus size: 8 2603146 TACTTATGTA 2603156 AATGTCTT 1 AATGTCTT 2603164 AATGTCTT 1 AATGTCTT 2603172 AA 1 AA 2603174 ATGCATTATT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.33, C:0.11, G:0.11, T:0.44 Consensus pattern (8 bp): AATGTCTT Left flanking sequence: Indices 2602656 -- 2603155 TCATTGTCATTGTCAAGTGCGCAAACAGCGGGCCTAATGAAAGTAACGATCGGCAATGACAACAA CTCCACGGCTCCATGGGCATCTTGAAGTACACAGTCCGGGAATAAGATGTTTTTGGGGGCTAGCC TTTATGGGAGTGGTAATCCACGGGAAAAACAGTGTCCTCCGACTGGAAATACAATAGATAAATGA ACTTTACATAGGTATACCTGAAAGTAACTTTTATACGTAATAAATACATCCGAAAAAACAATCGA TATTGCAGATTCCTTGAAATTGACACAATAGACATACTGTATATAAATATTTTAAAAAAGTATTA CTTATATGGAAATCATACTATAGATCCTAGGGATCCTAATCCTTCAATTATATGCCTACTAAATA ATGATCGAGCTTTATTGATTATTAACTGCACTAAATGTTGAACCGTTTACCACTTCTCACTTCAA AACTAAATGAAAACTAAATTTTATTTCTGAGAATATACTTATGTA Right flanking sequence: Indices 2603174 -- 2603673 ATGCATTATTCACCTTGTTGCATGAACCACAAATAGTTAGGCCACGAAATATCTCCATTAAATGA TACAGAAATGCATGAATATTAAGGCAAACAGCTTAACATAATAGCTTAACAATCGTCGTGTTCTA TGTTTTCAATATTATTTTATTTTCCTTATATACAAATCATTACAGTTTCGGCAAGTGCCATCCAC ATCGATCAGTAGTGCAGAGCTTAGGCCAAAGTTTCTATCAACTTAATCTCCATAATAACGATGCT TATTTTAATGACGAAAAATCTGTAAAATTTTTGATGCATGCTAATGCCTTTCAGTCGAACCTCCT GCGGGGCATGCGGCAATTTTCCGACATTTATGCAACACATGCCACCAAAGGGGATTATCGTCATG CACAGAGAGAAGCCAGAAATCTGTGTTCGGAAAACTTTTTGCTGTAGTGGAGCATTTTTGAATTT ATATGCAAGTTCATAAACAAAGCGGTAAAAAGGATTTAAGTTTGG Found at i:2603713 original size:7 final size:7 Alignment explanation
Indices: 2603701--2603714 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 2603691 CAATGATGCC 2603701 ATAAACA 1 ATAAACA 2603708 ATAAACA 1 ATAAACA 2603715 GCCAAGTTTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.71, C:0.14, G:0.00, T:0.14 Consensus pattern (7 bp): ATAAACA Left flanking sequence: Indices 2603201 -- 2603700 CACAAATAGTTAGGCCACGAAATATCTCCATTAAATGATACAGAAATGCATGAATATTAAGGCAA ACAGCTTAACATAATAGCTTAACAATCGTCGTGTTCTATGTTTTCAATATTATTTTATTTTCCTT ATATACAAATCATTACAGTTTCGGCAAGTGCCATCCACATCGATCAGTAGTGCAGAGCTTAGGCC AAAGTTTCTATCAACTTAATCTCCATAATAACGATGCTTATTTTAATGACGAAAAATCTGTAAAA TTTTTGATGCATGCTAATGCCTTTCAGTCGAACCTCCTGCGGGGCATGCGGCAATTTTCCGACAT TTATGCAACACATGCCACCAAAGGGGATTATCGTCATGCACAGAGAGAAGCCAGAAATCTGTGTT CGGAAAACTTTTTGCTGTAGTGGAGCATTTTTGAATTTATATGCAAGTTCATAAACAAAGCGGTA AAAAGGATTTAAGTTTGGCAAGCAACAATGGGCCACAATGATGCC Right flanking sequence: Indices 2603715 -- 2604214 GCCAAGTTTTTGGGAGCCTGTAAATTGTTTGTGCCAAGCGGTAGTATCAAGGACTCCCAGTCCGA TTCTCCTCGGCCACAAAAGCTGCACACAAAACTATGCCGCACACTCAACTGGAGTCGGGTTGAGC TTTCAGTTGGGTGGAAAGCGGAAAAGTTGGGAAGTGCCGGGGATTTGTTGCAGCCAAAAAGTTTC GGTGTCTGTGCGAAATTAATTGCTGGCCCAGAGCTGCCGCACCCTCCGCACTGAAACCCCCATAC GAAGCCATTTTTAAGCCAAAACAAAGCTATCACTTACACGCCGGCAAGGATTAGTCCAAGGATCC AGCGAGACGGAGCATGCGAAATTCAATTAGGCGCCATGACGTGCCACATCCGTCGGATGGGAAGG GTCCAAACTTGCCCGGCAATAAAACACAATGCAGATAATTTGGCGCTTTTTCAATTCCTTCTTGG AAGCCACAGGCGCTGTAATTTGCCACATAAGTCACAGAGTCAACA Found at i:2605326 original size:10 final size:10 Alignment explanation
Indices: 2605313--2605333 Score: 42 Period size: 10 Copynumber: 2.1 Consensus size: 10 2605303 ACTATGATGA 2605313 ATAGTATGTT 1 ATAGTATGTT 2605323 ATAGTATGTT 1 ATAGTATGTT 2605333 A 1 A 2605334 GGATTTCTTG Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.33, C:0.00, G:0.19, T:0.48 Consensus pattern (10 bp): ATAGTATGTT Left flanking sequence: Indices 2604813 -- 2605312 AAGAAAATAGGTTGTTTGGATTCTTAATTAAAAAATGTAAAAATCATACGCCCATAAGGATTTCG ATTATATTATTAAACTAGACCATTAATGTACTCACTGCTGTATGCATCTGATTGCCCTCTTCAAT TTACACGGCTCTATTCACGTGACCACTGCTGTTAAAGCTCCGTTCCTCACCTGAATCTTCAGCTT AATCGACCATCTTGTTGTTGCCGCTTGTTGGGCTTGTTGTTGCTGCTGTTGTTACCCGTTCATTT TCGTACTTTAATTACAACAACTAAACGGAGTACAAGTCTCCGTGGAGGCAATTACCCGGCGGAGC AACAAGCTCGATGCTCTGGCAGCTGGCTTTATTAAAAAATTCTAATCATTTCTTCAGATTTACAT GGAGATAAATGTTCTGGAATTTTAGACGGGATTGTTTGACGGAATGAGCTGCGCTTAGGGATTGC GGGGTCTTGGGATAAAAGTAGCAAGTTAATGATGGACTATGATGA Right flanking sequence: Indices 2605334 -- 2605833 GGATTTCTTGTCGCTAATCGTTAAAAGCAATGTTAATTTCTAAAGAAACATTGCTAAAATGTCAA AAACAAGGCAAATAAGGGAATGTCTTAACTGTTTTTGGGTAAGTGATTTATCCGAATGCTGTTCA AGCTTAAACAGTTTTTATTAATGATATGGTACAACCAAAGATACTAGAATTCTAGAAATATTCTA GTGTCTTTGGTACAACTATGTATATTGGCGTAGAATGGCTCATAACTCTTTGCATGAAATCAGAG GTGAACCGGGATGCCATTCTTGAAAAACACAAAGAAGCGATTGTCCCCTCCAGATAGCTGACCAT TTTGTCAAGGCATTCGAAGAGGTTCCAGCTTCTCCCGGCCGAATCACCCACTGGGGCTGTGCATC CGCATCTGCATCTGCATCCATGACTTGTGTGCCGCCACATTTCTCGAATGTCGAGAGGGGCTTTC TGCACTTTCCTCGGTCGAGTTATGAGCCCCTGCCACCGATCCGGA Found at i:2605928 original size:7 final size:7 Alignment explanation
Indices: 2605918--2605935 Score: 29 Period size: 7 Copynumber: 2.6 Consensus size: 7 2605908 CGTAGTCCGG 2605918 AGTCTCC 1 AGTCTCC * 2605925 AGTCTGC 1 AGTCTCC 2605932 AGTC 1 AGTC 2605936 CAAAGTTGCG Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.17, C:0.33, G:0.22, T:0.28 Consensus pattern (7 bp): AGTCTCC Left flanking sequence: Indices 2605418 -- 2605917 ATGTCTTAACTGTTTTTGGGTAAGTGATTTATCCGAATGCTGTTCAAGCTTAAACAGTTTTTATT AATGATATGGTACAACCAAAGATACTAGAATTCTAGAAATATTCTAGTGTCTTTGGTACAACTAT GTATATTGGCGTAGAATGGCTCATAACTCTTTGCATGAAATCAGAGGTGAACCGGGATGCCATTC TTGAAAAACACAAAGAAGCGATTGTCCCCTCCAGATAGCTGACCATTTTGTCAAGGCATTCGAAG AGGTTCCAGCTTCTCCCGGCCGAATCACCCACTGGGGCTGTGCATCCGCATCTGCATCTGCATCC ATGACTTGTGTGCCGCCACATTTCTCGAATGTCGAGAGGGGCTTTCTGCACTTTCCTCGGTCGAG TTATGAGCCCCTGCCACCGATCCGGACCCTAATCGAGCCCATACAACGGTAATTGCACTCGCAGA TAAATATCACAGTTAGAAGCCCACACGACGGACTCCGTAGTCCGG Right flanking sequence: Indices 2605936 -- 2606435 CAAAGTTGCGTCTGTGGCAACTTTGAAGCTGTTTGCTCAGTTGGCAGGGGCGAGCACTCACAAAA AGTGGTCAGTGGCAGCAAAATGGGAATGGTAAGACGAGTCCAAGATAGACTGGTCGCCAAGAGTT TCTGCTGCTCTACCCCTGCCTCAACGGCTTACACTGGGAGAAAAGGAAATGTATGCAAAATGTCA TTATATTGACCTAAAAGAGCCACATTTCAAATTTGATTCAAATTGTACGTATGTTCGTATGGTTT CCTTTTCGATATCTGAGGATTTTCTACCTTAAAACATTCTTGCAAGTCAATTAAGTTTTTCGCAG TGTACCACTGCTGGCGAAAGCCGGAGACAAGGAAGAAGTCGAGGCAAAGCAAAGATGCTTTATTA ATTTTAACCGTTTGCTGCGTGCCAGGCAGCCTTCGAGGGGTCTGCCAATCAGGGGGGTGGTGGGC GGAAGGCCAGGCTTGCCAGGCAGGGTTGCTAGGGGACCGGGGGAC Found at i:2606191 original size:8 final size:8 Alignment explanation
Indices: 2606174--2606191 Score: 29 Period size: 8 Copynumber: 2.2 Consensus size: 8 2606164 TGATTCAAAT 2606174 TGTACGTA 1 TGTACGTA * 2606182 TGTTCGTA 1 TGTACGTA 2606190 TG 1 TG 2606192 GTTTCCTTTT Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.17, C:0.11, G:0.28, T:0.44 Consensus pattern (8 bp): TGTACGTA Left flanking sequence: Indices 2605674 -- 2606173 GAAGAGGTTCCAGCTTCTCCCGGCCGAATCACCCACTGGGGCTGTGCATCCGCATCTGCATCTGC ATCCATGACTTGTGTGCCGCCACATTTCTCGAATGTCGAGAGGGGCTTTCTGCACTTTCCTCGGT CGAGTTATGAGCCCCTGCCACCGATCCGGACCCTAATCGAGCCCATACAACGGTAATTGCACTCG CAGATAAATATCACAGTTAGAAGCCCACACGACGGACTCCGTAGTCCGGAGTCTCCAGTCTGCAG TCCAAAGTTGCGTCTGTGGCAACTTTGAAGCTGTTTGCTCAGTTGGCAGGGGCGAGCACTCACAA AAAGTGGTCAGTGGCAGCAAAATGGGAATGGTAAGACGAGTCCAAGATAGACTGGTCGCCAAGAG TTTCTGCTGCTCTACCCCTGCCTCAACGGCTTACACTGGGAGAAAAGGAAATGTATGCAAAATGT CATTATATTGACCTAAAAGAGCCACATTTCAAATTTGATTCAAAT Right flanking sequence: Indices 2606192 -- 2606691 GTTTCCTTTTCGATATCTGAGGATTTTCTACCTTAAAACATTCTTGCAAGTCAATTAAGTTTTTC GCAGTGTACCACTGCTGGCGAAAGCCGGAGACAAGGAAGAAGTCGAGGCAAAGCAAAGATGCTTT ATTAATTTTAACCGTTTGCTGCGTGCCAGGCAGCCTTCGAGGGGTCTGCCAATCAGGGGGGTGGT GGGCGGAAGGCCAGGCTTGCCAGGCAGGGTTGCTAGGGGACCGGGGGACGTTGTCGTGAGACAAG TTTATTTGGCTCAGTGCCGTGTTGACGTTTAATAAATTTACGAATTGTGGCCGTGCGCGGCATGT GGCCAAGACATTGGCATTGGCCATGGCAATGGGTTGGCGATTGGACGATGGGAATGCCGCATTGG CAGTTGAACAAAGTACGTGCTCCCAGTGCAGCAAGAACTGCAACAACAGTCGGGGACAGCAGCTC TTGCGGCTTAGAGTGGCTTCATCAATCTTGGCCAGAATGCCGGGC Found at i:2607333 original size:8 final size:8 Alignment explanation
Indices: 2607320--2607336 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 2607310 GTACCTGGGT 2607320 CTGGGCAA 1 CTGGGCAA 2607328 CTGGGCAA 1 CTGGGCAA 2607336 C 1 C 2607337 CTGTTCCTGA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.24, C:0.29, G:0.35, T:0.12 Consensus pattern (8 bp): CTGGGCAA Left flanking sequence: Indices 2606820 -- 2607319 ATAGAGACACACACACTCGGTCGAATTCTCGGGGGGAGTGAGAGCGGATTCAGATAGATACGGGA ACAGAAGCACTTCTGCTGTAATTAAAAACTCGAGTTCACTGAAAAAGGCGACGTCGCTGGGACTT GAGAGCCCTTCGAGGGCTTCCAATGGCCCGATGCTACGGAGCTGCAACAATCAAAAGATAAACTG CCGCCGTGGCAGTGCGACTTGCAACTGGCAACCTGGAGTCGCCACTGCTCCCTGCATTCATTGAA GTCCATTTAGACTGCAATTAAAAAACTCACAACTTATACGCGGGCTGCAGATAAAGGCACGGCAA AGGCATCAAGTTCACTTAGCTTTGGCATAAATGTGAGGCTTCCAGCTAAGGAATGCCTGCCCCAA CTCTCCAACTCCAACCCAAGTCCAGCTATCTATGTATCTCCAAGTACCTGTATCTGAGTCGGTCT GTATCCGTATCCGTGTGCCTGTATCTGCATTGGGTGTACCTGGGT Right flanking sequence: Indices 2607337 -- 2607836 CTGTTCCTGAACTTCAGATACGTCTGTCAAAGAAAAAAGTGAATTAAGTGAATAAGAAAAACATG TTTGTGAAAATTGTGCGAATGCTTTAAATAATTAAGTAGGTGGACAGACAGTCAGACAGACCAAG AAGGTTGGTCTGCGAACAGGTCGGGAAATCAGATTCGAGACTCCGGCAATGTCATGAGCTTGGCT TTGACATAGCTCCAGGGGTTAAGCATAGGTAATTCCTGCTAATGAGCTGAGCACTGGAGAGTTCA CCGAATACCTCAGGAGAATCCCGCATATGTAAGTAATGCTAATGAGCAGGGTCGGAGATTCGTTA GGATTGCTCCCAATATGGAGCAGACTGCGAAGATGGAATATTTTGCAGACATAGATAATATGTTA AGGAAATAATGGAATATATTCTTGTCGCTGGGATATTTTATACGTCTCTCGAAGTATTCTCTTCG CATAGCGCATCGCGAATTCGACGCAGTCTTCCCACACATTTGGCA Found at i:2610600 original size:7 final size:7 Alignment explanation
Indices: 2610588--2610606 Score: 38 Period size: 7 Copynumber: 2.7 Consensus size: 7 2610578 ATAACGAAGG 2610588 TGAAAAT 1 TGAAAAT 2610595 TGAAAAT 1 TGAAAAT 2610602 TGAAA 1 TGAAA 2610607 TGCCAGCAAA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.58, C:0.00, G:0.16, T:0.26 Consensus pattern (7 bp): TGAAAAT Left flanking sequence: Indices 2610088 -- 2610587 ATTGCCGCGAATAACACAAAAAGTGCGGCTGCAAGACCAATCAAAACAAGTGCGGGCAATCAAAA CGGACGGCGAAGAGCGGCCTTACCGGCGATGTTGCATGCAACGCGGCGAAGAGCGAAATTCGTGG GGCGCCTGCGCGTATGCAACGCGGTTCGAAGCGGAACCAAAACAAAGCGCAACACACACACGCAC CCCCACGCCGCCGGAGTTCGACGGCAGACACGGAGTCGCCAGGACGATGGAGTGTCCTGCCCAGA CAGCCCGTCTCCAGGCGGAGTTCAGTTGCGGTTTGCTATCGCGGCACTACACAACGTGCGGCGGA GTATCCTCGACAGCCAATCCTTCCCGAACCTTCCTTTCGCGACTCACGACTCTCAACTCTTCGCG TGCCGCCTCGACTTGCACTTTCTGGTGATTGAGGAGGGTTCCGAGAACAACAAGAGTGTGTTTAA TGAATTCCAATCCACAAACGCGTGTGCATAATTGAATAACGAAGG Right flanking sequence: Indices 2610607 -- 2611106 TGCCAGCAAATTGAATTGCCCGGCCGACTCTTTGTCCTCCAGTTTGTCGCCCGTGACATCTCGAA TTGAATTTCGGTCCGCTCCGGCGCGCAAATTGCTTAACGAGCCAGTGAAAGTCTAACAAGAAGTC CCGCAAAAAGTACGTGCAGCGGCGGAATTTCTAATTGGATTAGAAGTGAACCACCCCAACCCGGG TCCGAGAAAAGTCGACGATTCCCGGTAAGCGTAATGAACTTTCCATCTACCGCGACAATTGTATG TGTCTCAACTGGCCATCAAGTGGCCAAGTGGAGTTGGCCAAGAAATGGCCAAAAGCCAAAGCTGA TGGGCGTGTAATTGATTCGGAGGCACATGATGGTGTGGGTGGTACCCCGACATTAGTGAAGGTCA GGGTAATGAGTCAGGAGGGTGATATGTGATATGAATGCCTAATTTGAATGCTCCCTGCCTCACGT CGAAACCAGAGAGTTACCAGCCTGGCGATTTGGCCTAATGACTAA Found at i:2611027 original size:7 final size:7 Alignment explanation
Indices: 2611015--2611029 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 2611005 AGTCAGGAGG 2611015 GTGATAT 1 GTGATAT 2611022 GTGATAT 1 GTGATAT 2611029 G 1 G 2611030 AATGCCTAAT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.27, C:0.00, G:0.33, T:0.40 Consensus pattern (7 bp): GTGATAT Left flanking sequence: Indices 2610515 -- 2611014 GTTCCGAGAACAACAAGAGTGTGTTTAATGAATTCCAATCCACAAACGCGTGTGCATAATTGAAT AACGAAGGTGAAAATTGAAAATTGAAATGCCAGCAAATTGAATTGCCCGGCCGACTCTTTGTCCT CCAGTTTGTCGCCCGTGACATCTCGAATTGAATTTCGGTCCGCTCCGGCGCGCAAATTGCTTAAC GAGCCAGTGAAAGTCTAACAAGAAGTCCCGCAAAAAGTACGTGCAGCGGCGGAATTTCTAATTGG ATTAGAAGTGAACCACCCCAACCCGGGTCCGAGAAAAGTCGACGATTCCCGGTAAGCGTAATGAA CTTTCCATCTACCGCGACAATTGTATGTGTCTCAACTGGCCATCAAGTGGCCAAGTGGAGTTGGC CAAGAAATGGCCAAAAGCCAAAGCTGATGGGCGTGTAATTGATTCGGAGGCACATGATGGTGTGG GTGGTACCCCGACATTAGTGAAGGTCAGGGTAATGAGTCAGGAGG Right flanking sequence: Indices 2611030 -- 2611529 AATGCCTAATTTGAATGCTCCCTGCCTCACGTCGAAACCAGAGAGTTACCAGCCTGGCGATTTGG CCTAATGACTAAGAGGCGATGAATGGGGAATTAATGTGCGGAACAATTAAATTGCAAAAAGGAGC CCTTTTCAACAAAGGAATCTTTGTCCAGGGTTTTGCTCCTAACACTCATCGATGCAAACGTGAAT AAGGGTGGTATCAACTTCCTGGAAATTCGAAATTTTGATTGTTTACTGGTTGGACAATCCGAAGA TGTCATTTGAGCTTGTAATCTATTAAAAATAATTGTTAGTTGAGACAACGGAAGTTAACTTTGAC TCGTTTATTGTACTATAATATAAATTATTAAATTTTAAACAAAAGCTATTTAATGAAATTTATTT CGGTAAAAATCTTACTTACTTTTTGATTCAGTGGCTTACGTTTTGTTATTATTATTACCTTACTT TGTTGTAAAAAACGGTTTGAATAAGTCGTTTTTGCACAGTGAAGT Found at i:2611388 original size:8 final size:7 Alignment explanation
Indices: 2611375--2611393 Score: 29 Period size: 8 Copynumber: 2.6 Consensus size: 7 2611365 TACTATAATA 2611375 TAAATTAT 1 TAAATT-T 2611383 TAAATTT 1 TAAATTT 2611390 TAAA 1 TAAA 2611394 CAAAAGCTAT Statistics Matches: 11, Mismatches: 0, Indels: 1 0.92 0.00 0.08 Matches are distributed among these distances: 7 5 0.45 8 6 0.55 ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47 Consensus pattern (7 bp): TAAATTT Left flanking sequence: Indices 2610875 -- 2611374 CTGGCCATCAAGTGGCCAAGTGGAGTTGGCCAAGAAATGGCCAAAAGCCAAAGCTGATGGGCGTG TAATTGATTCGGAGGCACATGATGGTGTGGGTGGTACCCCGACATTAGTGAAGGTCAGGGTAATG AGTCAGGAGGGTGATATGTGATATGAATGCCTAATTTGAATGCTCCCTGCCTCACGTCGAAACCA GAGAGTTACCAGCCTGGCGATTTGGCCTAATGACTAAGAGGCGATGAATGGGGAATTAATGTGCG GAACAATTAAATTGCAAAAAGGAGCCCTTTTCAACAAAGGAATCTTTGTCCAGGGTTTTGCTCCT AACACTCATCGATGCAAACGTGAATAAGGGTGGTATCAACTTCCTGGAAATTCGAAATTTTGATT GTTTACTGGTTGGACAATCCGAAGATGTCATTTGAGCTTGTAATCTATTAAAAATAATTGTTAGT TGAGACAACGGAAGTTAACTTTGACTCGTTTATTGTACTATAATA Right flanking sequence: Indices 2611394 -- 2611893 CAAAAGCTATTTAATGAAATTTATTTCGGTAAAAATCTTACTTACTTTTTGATTCAGTGGCTTAC GTTTTGTTATTATTATTACCTTACTTTGTTGTAAAAAACGGTTTGAATAAGTCGTTTTTGCACAG TGAAGTAATTTGTAGTATGACTACTTAGATCTTGTTAAAATGTCATGTTTTATCCCATTATCTTT TTTTTTTTTTTAATCAAATCAAGTTCCTACAGAATGTACGCTGCCCTCAAAGTCGAGGTTGTTTT TTTGCCATAACCATATGGCAACTATCAAAATTTATACTTGGCTAGATATTTTGCTGGTCGCCGAA ATGTACTAAACCAAATATTATTAACTATAATATTTTTTCCTTAATTTATACAAACTATGCCAAGG TTATAATTCAACCCTGCTTAAACCTACCTTAAAGCTGAGTCAGATGTTTCTGCTTGAGCTGTTGA GTTAAATAAAAATGGATGCGGGACTCTTGTCAGGATTTCATTTAG Found at i:2614974 original size:8 final size:8 Alignment explanation
Indices: 2614961--2614982 Score: 37 Period size: 8 Copynumber: 2.8 Consensus size: 8 2614951 GACCGGCTTG * 2614961 GTTTTTGT 1 GTTTTTGC 2614969 GTTTTTGC 1 GTTTTTGC 2614977 GTTTTT 1 GTTTTT 2614983 AATTAAAAAT Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 8 13 1.00 ACGTcount: A:0.00, C:0.05, G:0.23, T:0.73 Consensus pattern (8 bp): GTTTTTGC Left flanking sequence: Indices 2614461 -- 2614960 CAGTCGCAGGGCGTTCAAAAAACAAACCAGCACTGGCCGAAAAAAATGTTACATCACTTTATAAA GTTTAAACAAAACCTTAACTTAAAGGGGATTCATTTCAATTGAGGAAAATTCAGTTAGGTTTAGC TAAAGTATTAAGCCTAGTAGCAGTCTAGTGATATTTAAGATAATCTTTTAAATAATCTCTGATGT TATATATACTTTGCAGTTATTAAAATATATTTATGGGTTTGTACGATTTCATTTAATTTTAAATT GAGTGAATATTTTGATAAAATTTTCTTCTGTTTAGTCAAATATAGGGGAGTGACAGAACAGGATT GGAAGGAGTAAGGGAACAGAGCTTATGCAAGAAAATATTTACAATCAAGTCGATTAACAAAAGGA AACCTTGTGACGCGCACTTTGAGTTTTTCCTTGTTGTTTCCGAGCCCCGCTTTCTTCGTTTTTTT CCACTCTCCCCCAGAGGTTCGGGTGGTTTTCCTCCGACCGGCTTG Right flanking sequence: Indices 2614983 -- 2615482 AATTAAAAATCAGTAGACTCACGTAGTCGCTGGCTCTGCGGAGCCTCTTCAGTCGCCGACTGTCA TCAGCGCCATTTGGCAAATCAACGTAATCATTGCTCCTCCCAGCTACCCGTTGTTTTCGCCACCC CTGAGCAACAATATTTTTCATAAATACGACGGAGGCAGCACTTGAGATCTTTTGCCACATTTCCC CGCCAGCGACAACAATTCATAAGCGACGTCATCATTAGGGAAACATTTGCCGCCTACACACTCCT GCCACACGAGTGTGTGAATTGTGGCGACTCCCGCTGATTCCTGCCTGCCTTTCCAGCCCAACTCC CCATCAAACATCCTGGCCCAGTGCTTATTGTCTTAAGAGGAAGTCAGACGAGGGGCAGGAGGAGC AGGAGGAGGCACAGCCGCCGAGATTGGCAAGCGGATTGGGGCTACGCACCTCGCTTTTCATTGAA AAGACTCCCTGTTGGTGGTTTTTATGCCATGGCGGAAGCAACCAG Found at i:2615374 original size:9 final size:9 Alignment explanation
Indices: 2615357--2615380 Score: 41 Period size: 9 Copynumber: 2.7 Consensus size: 9 2615347 GAAGTCAGAC * 2615357 GAGGGGCAG 1 GAGGAGCAG 2615366 GAGGAGCAG 1 GAGGAGCAG 2615375 GAGGAG 1 GAGGAG 2615381 GCACAGCCGC Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 9 14 1.00 ACGTcount: A:0.29, C:0.08, G:0.62, T:0.00 Consensus pattern (9 bp): GAGGAGCAG Left flanking sequence: Indices 2614857 -- 2615356 GTGACGCGCACTTTGAGTTTTTCCTTGTTGTTTCCGAGCCCCGCTTTCTTCGTTTTTTTCCACTC TCCCCCAGAGGTTCGGGTGGTTTTCCTCCGACCGGCTTGGTTTTTGTGTTTTTGCGTTTTTAATT AAAAATCAGTAGACTCACGTAGTCGCTGGCTCTGCGGAGCCTCTTCAGTCGCCGACTGTCATCAG CGCCATTTGGCAAATCAACGTAATCATTGCTCCTCCCAGCTACCCGTTGTTTTCGCCACCCCTGA GCAACAATATTTTTCATAAATACGACGGAGGCAGCACTTGAGATCTTTTGCCACATTTCCCCGCC AGCGACAACAATTCATAAGCGACGTCATCATTAGGGAAACATTTGCCGCCTACACACTCCTGCCA CACGAGTGTGTGAATTGTGGCGACTCCCGCTGATTCCTGCCTGCCTTTCCAGCCCAACTCCCCAT CAAACATCCTGGCCCAGTGCTTATTGTCTTAAGAGGAAGTCAGAC Right flanking sequence: Indices 2615381 -- 2615880 GCACAGCCGCCGAGATTGGCAAGCGGATTGGGGCTACGCACCTCGCTTTTCATTGAAAAGACTCC CTGTTGGTGGTTTTTATGCCATGGCGGAAGCAACCAGAGAATCGCAAGAGGATGCACACTGTGGT TCCACCTTGAATAGTACAAAAATGCTAACAAAATTAACGGTAACTTTAAGTTATTTGATTGAATG TAGTGTTAGTGTAAAGTTATTCTGTTCAATGCGCAATTCGTAGATGCGAAATTTTAATTAATTTT AAGTCATAAAAACCATAGGAATATTGATGAAAGCTTACTAAACCATTCGAAGATTGTCTTATTAG AACAGTTCATATTTAAATGAATTTACTAAATATTTAGTTATTCTTACAACAATATATATTGAATT TTGAAGAAAACTCCAACCTCAAGAACATAATTGTGAAATATGAAATATATGCTAGAAACGAAGTA TATTCTATGCCAGCGTAAATATCACAAGCACATATCTATATAAAT Found at i:2615816 original size:7 final size:7 Alignment explanation
Indices: 2615804--2615818 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 2615794 AACATAATTG 2615804 TGAAATA 1 TGAAATA 2615811 TGAAATA 1 TGAAATA 2615818 T 1 T 2615819 ATGCTAGAAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.53, C:0.00, G:0.13, T:0.33 Consensus pattern (7 bp): TGAAATA Left flanking sequence: Indices 2615304 -- 2615803 CTCCCCATCAAACATCCTGGCCCAGTGCTTATTGTCTTAAGAGGAAGTCAGACGAGGGGCAGGAG GAGCAGGAGGAGGCACAGCCGCCGAGATTGGCAAGCGGATTGGGGCTACGCACCTCGCTTTTCAT TGAAAAGACTCCCTGTTGGTGGTTTTTATGCCATGGCGGAAGCAACCAGAGAATCGCAAGAGGAT GCACACTGTGGTTCCACCTTGAATAGTACAAAAATGCTAACAAAATTAACGGTAACTTTAAGTTA TTTGATTGAATGTAGTGTTAGTGTAAAGTTATTCTGTTCAATGCGCAATTCGTAGATGCGAAATT TTAATTAATTTTAAGTCATAAAAACCATAGGAATATTGATGAAAGCTTACTAAACCATTCGAAGA TTGTCTTATTAGAACAGTTCATATTTAAATGAATTTACTAAATATTTAGTTATTCTTACAACAAT ATATATTGAATTTTGAAGAAAACTCCAACCTCAAGAACATAATTG Right flanking sequence: Indices 2615819 -- 2616318 ATGCTAGAAACGAAGTATATTCTATGCCAGCGTAAATATCACAAGCACATATCTATATAAATAAA TACATAGTAGACTTTTGTTTGGAATATACATATAATTTTTAACATTGTGGGGCTTAAGTACCACC TTGGTTCACCGATTTGCCCCACTGTGCCTTCACTGTTCAGCGAGCAATTGCAGCTTTACTTTTTG CGCGTTCTATGCCCATCTATGCCCATCCGCCCCTTTTGAAGTGCTTTCGCCCTGCCTTTCTCTTT GCCACTGCCTTTGCCCACTCGCTTGTGTGTTTTATATATATTTTGCAATTTTTCACTTTACGACT TTCACATTGTTTATGCAAATAGGCGAAAATGCTATTTGAATTTAGTAGAAGAGAATTATGATAAC GCGATTGTCAACGGCAACCCTGATTTTATTTTATTTCCTTATATTTTTGTTACCATTTTCCCGTT GTCTTTGCCGCTGAGATACAGTTATGATTATGACAGGCACCATGT Found at i:2616034 original size:10 final size:10 Alignment explanation
Indices: 2616019--2616040 Score: 44 Period size: 10 Copynumber: 2.2 Consensus size: 10 2616009 TTTTGCGCGT 2616019 TCTATGCCCA 1 TCTATGCCCA 2616029 TCTATGCCCA 1 TCTATGCCCA 2616039 TC 1 TC 2616041 CGCCCCTTTT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 12 1.00 ACGTcount: A:0.18, C:0.41, G:0.09, T:0.32 Consensus pattern (10 bp): TCTATGCCCA Left flanking sequence: Indices 2615519 -- 2616018 GAATAGTACAAAAATGCTAACAAAATTAACGGTAACTTTAAGTTATTTGATTGAATGTAGTGTTA GTGTAAAGTTATTCTGTTCAATGCGCAATTCGTAGATGCGAAATTTTAATTAATTTTAAGTCATA AAAACCATAGGAATATTGATGAAAGCTTACTAAACCATTCGAAGATTGTCTTATTAGAACAGTTC ATATTTAAATGAATTTACTAAATATTTAGTTATTCTTACAACAATATATATTGAATTTTGAAGAA AACTCCAACCTCAAGAACATAATTGTGAAATATGAAATATATGCTAGAAACGAAGTATATTCTAT GCCAGCGTAAATATCACAAGCACATATCTATATAAATAAATACATAGTAGACTTTTGTTTGGAAT ATACATATAATTTTTAACATTGTGGGGCTTAAGTACCACCTTGGTTCACCGATTTGCCCCACTGT GCCTTCACTGTTCAGCGAGCAATTGCAGCTTTACTTTTTGCGCGT Right flanking sequence: Indices 2616041 -- 2616540 CGCCCCTTTTGAAGTGCTTTCGCCCTGCCTTTCTCTTTGCCACTGCCTTTGCCCACTCGCTTGTG TGTTTTATATATATTTTGCAATTTTTCACTTTACGACTTTCACATTGTTTATGCAAATAGGCGAA AATGCTATTTGAATTTAGTAGAAGAGAATTATGATAACGCGATTGTCAACGGCAACCCTGATTTT ATTTTATTTCCTTATATTTTTGTTACCATTTTCCCGTTGTCTTTGCCGCTGAGATACAGTTATGA TTATGACAGGCACCATGTTGTTTGGGGCAAGTGAAAAAAATATTAATAAAACACTACACAGCCAC CCCTCCACAGCTACACACCCCCCACCCCACGCGACACGTGCGACAAGCCGCACAACAGTCGGTGT TATTGCCCCGTTGCTGCCTTTTTTACAAAGTGTAAATTGTTTTAATACTTTTTAGTGCCACGCAG CGCCATCTTGTGTCGCGTAGTGGCGGCAGCTGCGCCAAACAGCCA Found at i:2618883 original size:9 final size:9 Alignment explanation
Indices: 2618865--2618883 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 2618855 CCTCAGTGCT 2618865 GGCCAACAC 1 GGCCAACAC * 2618874 GGCCACCAC 1 GGCCAACAC 2618883 G 1 G 2618884 ATTAGCGACA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.26, C:0.47, G:0.26, T:0.00 Consensus pattern (9 bp): GGCCAACAC Left flanking sequence: Indices 2618365 -- 2618864 GCGAGAGATATATAGATGAGAGAAAGAGAGCTGTGGTGAGTTGGCTGGATCGTCTTGGTGGTGAG TTTGACCTGCACCAACCTGGCCAAAAGCCGCCTTTCGGCCAACAGCTACTTTCTACAATCTTCAG TTGTTTGAGCAGCCCCAAAGCGAGCGGTGCGAGTGCTGTTCTTTCGCGAACCAGGAATTCAGATA GAATCCCAGCCGATACGTATCAATCCGATCGCGAGTGCACGTAATTGGAGCAAGCGGATCGCCCG TTAATTGCTGGCGACGGTAATTGCAGGCCGCCGCATACCTGCCAACTGCTTAAGGTGTTCCCCGT TCGTTAATGTGTCAATTGATTGATTGGCCCGCGACCCGTGATTGACGTGCGTTCCACTCACCGCG ATGCTCTCGAAGAAGCGCTGGTGGAAGATCCGGCTGCCGCAGGTGGGCAAGCAGGATCAGTCGAG GAACTACCGGGACATCGTCAACCTGAGCGAGTGCTCCTCAGTGCT Right flanking sequence: Indices 2618884 -- 2619383 ATTAGCGACAGCTCCACCACCACCGCCAGCAGCGGCAGTCCCACCCGCCACCGGAGCTGCGACAG TCTCTCCAAGAGCTCCCAGGCGGAGGCGGGCAAGCTGTTCCCCCGGAACATGCCCAGCATACGGC GGAGTCGCCGACGGGCTGTGTCCGCGGAAAGGGAGCGCCTGGCCAGCCGGGAGCGGCTGGAGGAG CAGGTTCAGCCGCCGAAAATGCCGCAGATAGGAGCTGGACAGCAGTCCCGGCTATCGACGGTGAC CAAACTGACGCCCAGGAAGCAGAGTAGCAAGTCCACGTGCTCCAAACATCGGGGCAACGCCCCTG CGAAGTGCATCATCAAGTCGGCAGTGCGAACCAAGACCAAGCCAAAGGCCACCACGATCACCCTA GCACCCTACGAAATAGCGCTGGAGCTGCCCAACGAATCCCCTGCACCCACTTTGGCCATGGCCGT GGCCCAATCCTCCGGCTGCGTGCAGAGGAAGCTGAGCAGCGAGGA Found at i:2619956 original size:7 final size:7 Alignment explanation
Indices: 2619944--2619960 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 2619934 TTCATATGAG 2619944 CCGTGCT 1 CCGTGCT 2619951 CCGTGCT 1 CCGTGCT 2619958 CCG 1 CCG 2619961 AGTTGAGGAG Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.00, C:0.47, G:0.29, T:0.24 Consensus pattern (7 bp): CCGTGCT Left flanking sequence: Indices 2619444 -- 2619943 CATGCTGACCGGCAGCTTAACGCCCTCCCAGATAGCAAGGATCCAGGGGCAGCAGATCCTCCGAT ATGACGATCTGAGGAACCTGAACCGCTGCCGCAACAGGAACGCCGTTTGGCTAAATCCCAAGGAT ACGGAGCAGCTCCTCGAGGTGGACAAGAGCAGGAGGAAGGCCAACTGCTACTTCAACCAGGCCAT TGCCGACGATATCCAGCTCAGCGATATTGAAGAACAATTGGCCAGATTTGATGGCCACTCAAAGA GGCCGCCACCGCCGGCAGCCACAGCACCCAAAATGTGAGTTTCCACCGGCTATCTCTAATGGCCA TAACTCTCGGCGATAAGTGGGCGAGGGAAAGCGGAGTTGTCGGCGGGAATGTGGCCAACTAATTT GAAATCCATTTGATGAGCTTTGCATTTCCCAATTTAAGTGACTATAAAACGGGCGTCGCAGTAGA GAGTTTACGGCCCAATTTGATGGCTGCTTAATAGCTTCATATGAG Right flanking sequence: Indices 2619961 -- 2620460 AGTTGAGGAGCAGTTGGGTTCTGGAGGATTCTATTCCTAACCACTGGAATCATACTTTATGGTTC TTCAAATTAAACTGGCTATTCGAAGTTATAGGCAAGGCAGATCGCATTAAAATGGGCTGGCACAC TGACAGCTTTATAGATTTCCGACTTACGTTGAGTTAATACTCGTTATATTGAAAATGGCCGCTTT CGTGTTTGGTAATTTAATACCTTTTAGCTGCCGTTGAAAATGTGGGTCTGCAACTTTCTACCAAT GTTGTTTTTACAACTATTGAAAGAGAAGTACGAAGGCCAAACAATTTACCGAATTTACCGACTAC AATTGCAATTGTTTAAAAGGTAATAAACCAATGGACACGATTGTTGTTTTTGGCCCTTGGGTTTA TAGCCCATTTGAAGTTTGCAATGTTAATATGGAATTAATCCCGTGATCTTTTTTTCTGTTGTCAT TTTTGTCACCATCGCCATTTCTTTCCCTTATTAGATTTCATATTG Found at i:2620277 original size:9 final size:9 Alignment explanation
Indices: 2620263--2620281 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 2620253 AAGGCCAAAC 2620263 AATTTACCG 1 AATTTACCG 2620272 AATTTACCG 1 AATTTACCG 2620281 A 1 A 2620282 CTACAATTGC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.37, C:0.21, G:0.11, T:0.32 Consensus pattern (9 bp): AATTTACCG Left flanking sequence: Indices 2619763 -- 2620262 TGGCCATAACTCTCGGCGATAAGTGGGCGAGGGAAAGCGGAGTTGTCGGCGGGAATGTGGCCAAC TAATTTGAAATCCATTTGATGAGCTTTGCATTTCCCAATTTAAGTGACTATAAAACGGGCGTCGC AGTAGAGAGTTTACGGCCCAATTTGATGGCTGCTTAATAGCTTCATATGAGCCGTGCTCCGTGCT CCGAGTTGAGGAGCAGTTGGGTTCTGGAGGATTCTATTCCTAACCACTGGAATCATACTTTATGG TTCTTCAAATTAAACTGGCTATTCGAAGTTATAGGCAAGGCAGATCGCATTAAAATGGGCTGGCA CACTGACAGCTTTATAGATTTCCGACTTACGTTGAGTTAATACTCGTTATATTGAAAATGGCCGC TTTCGTGTTTGGTAATTTAATACCTTTTAGCTGCCGTTGAAAATGTGGGTCTGCAACTTTCTACC AATGTTGTTTTTACAACTATTGAAAGAGAAGTACGAAGGCCAAAC Right flanking sequence: Indices 2620282 -- 2620781 CTACAATTGCAATTGTTTAAAAGGTAATAAACCAATGGACACGATTGTTGTTTTTGGCCCTTGGG TTTATAGCCCATTTGAAGTTTGCAATGTTAATATGGAATTAATCCCGTGATCTTTTTTTCTGTTG TCATTTTTGTCACCATCGCCATTTCTTTCCCTTATTAGATTTCATATTGTTTAGGATAAATTAAT TTCTTCAGAACTTCTTAAGGAATCCAGAACGATAAGGCATACCTCTTTGGCGGCTCATAAATAGA GCGGAGTTTATCATTTTCACCTGATCAACAGCCGTTGTTGGCTACGCGTATCAGTTTCAATTGCG CTGAGAGTACAAATCCTACAGGTCACCCTCGAATAATGGCACAAATAATCCGCCATAAGAGGCTC TGTCAGCTGGAGGCGACTTTGTGGGCTCGCTAAGAAGGTGTTATTAATGCCCGACTATTTGCAAA ACTGGCACCGGAAAGTTATTTATCAACTTTCTGGCCAGCACGTGC Found at i:2621050 original size:9 final size:9 Alignment explanation
Indices: 2621036--2621062 Score: 54 Period size: 9 Copynumber: 3.0 Consensus size: 9 2621026 GGTATTCTGT 2621036 ATCTTTCAG 1 ATCTTTCAG 2621045 ATCTTTCAG 1 ATCTTTCAG 2621054 ATCTTTCAG 1 ATCTTTCAG 2621063 GTCCTCGGCA Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 18 1.00 ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44 Consensus pattern (9 bp): ATCTTTCAG Left flanking sequence: Indices 2620536 -- 2621035 AATAGAGCGGAGTTTATCATTTTCACCTGATCAACAGCCGTTGTTGGCTACGCGTATCAGTTTCA ATTGCGCTGAGAGTACAAATCCTACAGGTCACCCTCGAATAATGGCACAAATAATCCGCCATAAG AGGCTCTGTCAGCTGGAGGCGACTTTGTGGGCTCGCTAAGAAGGTGTTATTAATGCCCGACTATT TGCAAAACTGGCACCGGAAAGTTATTTATCAACTTTCTGGCCAGCACGTGCTCCTTCCTTCGCCT CGCTGTCGAGTTTTGTTAACTGCAAAATGAATTGCATGCAGCTAAGTGGCAACAGCAGCGGTTAA ACGAGGCTGGCAGAACTTCGGGTCCACTGAGCCCATCCTCACGAGGTCCTTCTCCTCCGATCGCC CGTCACCTTGTGTTTGCATCCTGCAGCCTCATAAATTCCATCCGACGACTTCATAAATTGAGTTC TTTTTGCCGCCTGACTGAGTGCCCTTCATCGAAAAGGTATTCTGT Right flanking sequence: Indices 2621063 -- 2621562 GTCCTCGGCATCTTTGCCATTTCTGCCATCTCTTCCATCTTTTGTATTCTCTGCATTCCGCATGC AGACTTCATTTGCATGGACTTCTGTTCATAAATCTACGCAAACTGTTAATTAGATTTTGTTTTGG GTGAAGCCATAAAATATTGGTGGAAGGAGTGCGCCATCAATTTCCCTTAAACAGAACTTTGTAAT TTGAGACGCACATCCACCTCCAGTTCCACCTCCAGTTCCACATCCATATGCACATCCTCTCGAGC CATTCGCAATCAGCGGGGCTATTACATTCGCAGTTTAAATAAACCAAACCCAATATTGACTGGCG GCTACTTAAAGCGTAATTAAGCGCCTGGCCGGCCGAACACTTTGCATAGGAATCTCAACAATAAA GTAAATAAGTTGGGACCGCCGGCGGCCCTCTTTTGCCAGCCTGGCTAATTGAAGTTGGCCAGAAG CGAGGGGCTAGTCCGCGTCCATGGACCACCCGAGTGGTTCACTCC Found at i:2622354 original size:7 final size:7 Alignment explanation
Indices: 2622342--2622361 Score: 40 Period size: 7 Copynumber: 2.9 Consensus size: 7 2622332 GCCGTGGGCC 2622342 AAAGGGG 1 AAAGGGG 2622349 AAAGGGG 1 AAAGGGG 2622356 AAAGGG 1 AAAGGG 2622362 AGGGAGGAGC Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 13 1.00 ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00 Consensus pattern (7 bp): AAAGGGG Left flanking sequence: Indices 2621842 -- 2622341 TGAAGTGGATCTGATTTTCTTTGGCCTTTCTTCTTCTTTCTACATATTTTCAAATTATTTTTTCG CTGGGCGTTCGGGCAATTTCTCTGGCTGTCAGCGAACGAAGCCAATCAAAACCACAACTTGTTCT CCAGAAGATTCAACCCCCTATTATAGTGACACACACATTATAGTGTGACACAATCCCAGGGCCAA ATGTTTTATAAGCCATCTTTGTCTTAAAGTGGCTGGGAAGTCAGAACTCGCGTTTTATTGATTCA ACACCTAATCGAGAATCCATAAAACGCATTAACAAAACACAAGATTTACAAGTGAATGGAGAAGA AGACAGAAGAGTTGATTGATTTCGCCTCGAGTTGGGGGAAACTCAATTTATAATCTCGAAGTGGC GGGTCAAAGGAGGGGAGGGATGGAGGGTTAAGTATTTTGCAAAGCAGAAATGTGTTTATGAAATA AAATCGAAAACCGCAAAATAAAATTAGCCAAACAAGCCGTGGGCC Right flanking sequence: Indices 2622362 -- 2622861 AGGGAGGAGCTGGCTAAATTGAAGGGCGTTTCTTTGCAAGCTCATTATATTTCCTGTTCTGCCGC CCGATTATGATTATCTTTTCTCCTTGGATGCCCTGTGCGGTACATATGCTACATATGTACAATTC CGAGGAGCTCCGTATCAGGATGGAGTCAATTTAGTGGCAATAAGTCAGAGGTTGCTGATTGGGAG CGTGTGTAAGCCAAGTAAAGTGTTCTAGCCACGATCGGGAGTCGGGCACTTCGATAACCAGTTTG GCGCATTGTTGCGTTTAATTTTCGTAATTTACGTTTAATTGAAATCGGCGGAGAGCACAGGCCGT GTAATTAATTTAATGGCCATCGCTTTGTTGGCCAAATACAGGTGGGAAGCGAACCTGAAGCCCGT TTTGTGCCGTCATGCCCCTTTACAAATCGTTACCAAATTGTGGCAACTTGGGTCTGGACCTGGAC AATTACCAAATGGCATTGCCGAGATCTCCAGTCGCCCACACACCG Found at i:2622651 original size:9 final size:9 Alignment explanation
Indices: 2622637--2622655 Score: 31 Period size: 9 Copynumber: 2.1 Consensus size: 9 2622627 TTGTTGCGTT * 2622637 TAATTTTCG 1 TAATTTACG 2622646 TAATTTACG 1 TAATTTACG 2622655 T 1 T 2622656 TTAATTGAAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.26, C:0.11, G:0.11, T:0.53 Consensus pattern (9 bp): TAATTTACG Left flanking sequence: Indices 2622137 -- 2622636 AACACAAGATTTACAAGTGAATGGAGAAGAAGACAGAAGAGTTGATTGATTTCGCCTCGAGTTGG GGGAAACTCAATTTATAATCTCGAAGTGGCGGGTCAAAGGAGGGGAGGGATGGAGGGTTAAGTAT TTTGCAAAGCAGAAATGTGTTTATGAAATAAAATCGAAAACCGCAAAATAAAATTAGCCAAACAA GCCGTGGGCCAAAGGGGAAAGGGGAAAGGGAGGGAGGAGCTGGCTAAATTGAAGGGCGTTTCTTT GCAAGCTCATTATATTTCCTGTTCTGCCGCCCGATTATGATTATCTTTTCTCCTTGGATGCCCTG TGCGGTACATATGCTACATATGTACAATTCCGAGGAGCTCCGTATCAGGATGGAGTCAATTTAGT GGCAATAAGTCAGAGGTTGCTGATTGGGAGCGTGTGTAAGCCAAGTAAAGTGTTCTAGCCACGAT CGGGAGTCGGGCACTTCGATAACCAGTTTGGCGCATTGTTGCGTT Right flanking sequence: Indices 2622656 -- 2623155 TTAATTGAAATCGGCGGAGAGCACAGGCCGTGTAATTAATTTAATGGCCATCGCTTTGTTGGCCA AATACAGGTGGGAAGCGAACCTGAAGCCCGTTTTGTGCCGTCATGCCCCTTTACAAATCGTTACC AAATTGTGGCAACTTGGGTCTGGACCTGGACAATTACCAAATGGCATTGCCGAGATCTCCAGTCG CCCACACACCGCATTGATTTCCATGGGAGCTCTAAAAATACAAACTTTAGAAATTGCCATCAATC AGACGGCGGTGGCCTAATGAGAACCAAATGCAAATCGAGCCAAGTAACAAACTGGCACAAATGTC ACTTGGTCGAAAAGCTTGTGAAAGTGTCTGGCCGATCGGCGATCGCCCGCACAGATCTGAAGCTG GAATTCAAGTTGATAATCGTGATTTGCTTGAAATATTTTAGCCACTCGAGCGTCGAGATTTCCGC AAATTAATTTCGCCCCCCATCTGCGCGGCACTTTGCGGAGAAAGC Found at i:2624578 original size:8 final size:8 Alignment explanation
Indices: 2624565--2624581 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 2624555 AGTTAGCCAT 2624565 GTTTGTCC 1 GTTTGTCC 2624573 GTTTGTCC 1 GTTTGTCC 2624581 G 1 G 2624582 CAAGTCCCCC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.00, C:0.24, G:0.29, T:0.47 Consensus pattern (8 bp): GTTTGTCC Left flanking sequence: Indices 2624065 -- 2624564 AAATGGGAATAGATTGCATACCTCTCAATTCAATAGAAGAAAATAAAGCTAAATAAAGCCATTGT CTTAAAACTGTGTTGAAGTTTAAAAGTTTCACAAGATTGTATACAACATTTTTAAGCTTCTATCA GTGTATGGAGTCTTTGGGGCCTAAGTAGGTTCGCCTGTGATGCACCACACAACTTTATTTTGACA GGCGGCGATTAGAAGACGACTTTCCCAGCCGTCCATCTCCTTACCGCCCCCCCCCCTTGCTGCTC CTACCGCTTTGTTAATTGAAATGTTGTTGTTGCCTGCTGATGCAGATGCTGATTCCGATGTTTGT TTGCTCAGTTTCCGTCCCTGTCCCCCACCGTTTCACCATATCGTCCGCCGTCTCCCTCCCTGTCG CCTGTCTGTCAGACGCTTGTTGCTTTTGTCAGTTGTCATGTTCTGAGCGGAGGGACCTACACGAT TTTGACATTGGTATGGCGATTGCCATTACAGTTACAGTTAGCCAT Right flanking sequence: Indices 2624582 -- 2625081 CAAGTCCCCCTGTTCGTAAGTAAGTTCGCATGTCCGCTTGTCCGTAAGTCCGCTTGTTTCATGAA GGAAGTCTCGGCGGCTGATCAAACGCATGCAAAGATAATCCGTTTACGCCCCGATGGGACTCCAA TTGGAAATTGGAAATTGAAAATTCGTTGTGCGTGAGAAAACCGTTCAACGTTTTGAGCCTGTTGT GTATGCCATCATTAATTATGGAACCAAACATCCTTTTGGCCTTTTTGCTGATCATCGGAGCAGAG AGTCGAACCAGAGCGGTCATAGACGGCTGCACTTGCTCCGCCACTGCGGTCACGGCCAGCTGAAT ATCAGGGAAACCAGGCGACTGAAGGGACTGAGGTGACTGGAGTGACTCGGGTGAGCGGAGTGCAT TGCAACCGCAGGAAAGACATCAATTCCGCCCGAGGGAGTGTTTGGACTGTTGCATTATTTTCGGT AATTGCTTTTGGCCATCCCGGGATTGTCGCTGCCGAAACTAGATT Found at