TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: arm_3R assembled 2004-3-5 md5checksum:6b279651b3b268f11e0dd1d87ded0ccc Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 27905053 ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28 Found at i: i:24874188 original size:7 final size:7 Alignment explanation
Indices: 24874172--24874215 Score: 74 Period size: 7 Copynumber: 6.3 Consensus size: 7 24874162 TCTTCAACTA * 24874172 AACTCCG 1 AACTCTG * 24874179 AACTATG 1 AACTCTG 24874186 AACTCTG 1 AACTCTG 24874193 AACTCTG 1 AACTCTG 24874200 AACTCTG 1 AACTCTG 24874207 AACTCTG 1 AACTCTG 24874214 AA 1 AA 24874216 TGTACTCACC Statistics Matches: 34, Mismatches: 3, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 7 34 1.00 ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25 Consensus pattern (7 bp): AACTCTG Left flanking sequence: Indices 24873672 -- 24874171 AAAGAAATTAAGGACGAAGTGAAGTATAGGCAAAAATGTTGAAAGCTATGAATAATTTTTTAAGC AATGCCCTCAGAGGCCGTTGCAAAGATAGAGGCGCGTATTCAATTAAAACTAAACAAAGAGTATA AAAACAAGCAAAACTCCAGCCAACAAGATGAACTCATATGAACATAGGTTATAGATTCTCGATCG AGATAGGGATCAGGATCGCGAATAGGTCAATCGCTGCTGGTCAAGCAGGGCGCAGAGAAAAAAAA ATAAGGTACACTTAATGGGAGAGAAACAGTTGAGGGATTAGAACAAATCGCGTGACCGTAACCTG ACAAAAAACACAAAACTTATAGGAAAATGTGCAACCAAAAATGTTAGCTATAAGCTCTCACCAAA TACGCAAAGCTGAACGCTCCCCGCGACCCCGTTGTCACCACCTACTTACCCCGAAACTTATAGTG AATATATATGTATATCATGGCTTGCCAAAGGGGGCTCTTCAACTA Right flanking sequence: Indices 24874216 -- 24874715 TGTACTCACCCGATCGATCAGCTTAGCTAACTTTTTCTGGAGCCGCGCAGCTCAAGCAAACACTC AAACTCACACCCACTTACATATGTGCAACTTTTTCATGTACCTTTCGCATCTTAGATACTTAAAT GGATTATTAAACGGAAGACCCGAAAATTGTTAACTGATCTAAGGCAGAACTACACACAAACTACT AAGAAAATATACTGAATTATTTATGGAACGGCGTACAAAACTAAAGCGCAACAAATTGGGAGAGA AAGGTTAGGAATCATTGCAAAGTAATAATCATAGACACAAAAGTATTCAGAAAACAACACACAAA ATAAACACACAAGGCACATATACAAAGCAGATGAAAAAACAAACTACAACTGAGAAAAACACGGC ATAAATAAGGTTTAAGTTATGTTTAAACAAGAGATAAATAACTGTAACGGTAAAGTCGAAAGTCA ACAGTTGATATGTTGTAAAAAAGCTATTAAATAAAAACAAAAAAC Found at i:24879775 original size:7 final size:7 Alignment explanation
Indices: 24879763--24879776 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 24879753 TGTACTAACG 24879763 ATTATGA 1 ATTATGA 24879770 ATTATGA 1 ATTATGA 24879777 TTCTAGTCAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43 Consensus pattern (7 bp): ATTATGA Left flanking sequence: Indices 24879263 -- 24879762 CCGAGGGATATAATGCTACCACCCAACTGTGCATCGGGTCCAACGAGCACAAGGACACCTGCAAC GGCGATTCCGGCGGACCGGTGCTCATCTATCACATGGACTACCCCTGCATGTACCATGTGATGGG TATCACATCCATCGGAGTGGCCTGCGACACACCCGATCTTCCCGCGATGTACACACGGGTTCACT TCTACCTGGACTGGATTAAGCAGCAGCTGGCCAAAAATTAGAATTGATATTTACATACGAAAATT TGACTCCACAGTTCTGTGGATAACTTATCAAAAGGAGTTTAACTAACTTCAGTTTTGAGTGCATT ATGGGAAACAATAGTAAATGGAAAATAAAGCTGAATTGATTGAGTATTATTCACATACAGTGTTC TAGAAAATGATTTGATTTAAGTGCAAAGTCCATGAATATAAAAATACTTTTGAACATGAACGCTA GTTCTCCGGGAATTTATGTATTATCCTGAGCAGATTGTACTAACG Right flanking sequence: Indices 24879777 -- 24880276 TTCTAGTCATTCACTAAACGCCGAGGCAACCACACGATGATTGCCTCGGCAATCCGGCACGATTG TTCTTCTGGAAACTGGGTGGCTGGGCATGTACATAAGGGTGTACTTTTACCTGGACTGGATTAGG CAGCAACTGGCCATAAAATAGATTTAAATTAGAGATTTGAATTAGAAAAGTCTATCGAGATCACC GTTCTATCAGAAGTAGTAGTTTTTTTCAAATATATATTTTATATATATAAGCATTTAAATAACCT TTACCCAGTAAGAAGATACAAGATACGTAAGATCAGCCTTGCTTACCCACTTATAAAGAAGTAAA AACAAAATCGTTTTATTGTGGAATAATTGTTAAAAGAGCGGGGATTTCATTAGCTTTTACCCGCT TTAGACGCACCTCCATTGGGCTTTCCGCAGCTAATTGATCGGTAACTAATTGGGAGCTAAACCCG TTCGGATCGCACAGTCGATCACCGATCGCCACCTGAAGATGAAGA Found at i:24880061 original size:7 final size:7 Alignment explanation
Indices: 24880049--24880062 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 24880039 ACCCAGTAAG 24880049 AAGATAC 1 AAGATAC 24880056 AAGATAC 1 AAGATAC 24880063 GTAAGATCAG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.14, G:0.14, T:0.14 Consensus pattern (7 bp): AAGATAC Left flanking sequence: Indices 24879549 -- 24880048 ATCAAAAGGAGTTTAACTAACTTCAGTTTTGAGTGCATTATGGGAAACAATAGTAAATGGAAAAT AAAGCTGAATTGATTGAGTATTATTCACATACAGTGTTCTAGAAAATGATTTGATTTAAGTGCAA AGTCCATGAATATAAAAATACTTTTGAACATGAACGCTAGTTCTCCGGGAATTTATGTATTATCC TGAGCAGATTGTACTAACGATTATGAATTATGATTCTAGTCATTCACTAAACGCCGAGGCAACCA CACGATGATTGCCTCGGCAATCCGGCACGATTGTTCTTCTGGAAACTGGGTGGCTGGGCATGTAC ATAAGGGTGTACTTTTACCTGGACTGGATTAGGCAGCAACTGGCCATAAAATAGATTTAAATTAG AGATTTGAATTAGAAAAGTCTATCGAGATCACCGTTCTATCAGAAGTAGTAGTTTTTTTCAAATA TATATTTTATATATATAAGCATTTAAATAACCTTTACCCAGTAAG Right flanking sequence: Indices 24880063 -- 24880562 GTAAGATCAGCCTTGCTTACCCACTTATAAAGAAGTAAAAACAAAATCGTTTTATTGTGGAATAA TTGTTAAAAGAGCGGGGATTTCATTAGCTTTTACCCGCTTTAGACGCACCTCCATTGGGCTTTCC GCAGCTAATTGATCGGTAACTAATTGGGAGCTAAACCCGTTCGGATCGCACAGTCGATCACCGAT CGCCACCTGAAGATGAAGATATGGAGGCTGTTCTCCCAGCTGATCGTTTCGCTGGCATGTGTTTT TGGCCAGCAGCCGGATATGGATGTTGTGGGATGTAAGTGGACAAAGAAGTAGCCTTGCAAGTGGC TTTAAAGATCTAGTTATATATTATAATATATTAACGTGTTGACCACTGATCTGAGCTGTTCTTTT TGATCAATATTGGATTATCAAATTGAAAATCGCAATGTTCAGCTTGCTCTAGATACAAGAAGAGC GTTTTCGAGGAAAGAATCGAGTTCGGTTTCCTGTTGCCCGGAGCT Found at i:24889821 original size:7 final size:7 Alignment explanation
Indices: 24889809--24889822 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 24889799 TGTGTGTGTG 24889809 TGCTGGC 1 TGCTGGC 24889816 TGCTGGC 1 TGCTGGC 24889823 GAGTGAGTGT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.00, C:0.29, G:0.43, T:0.29 Consensus pattern (7 bp): TGCTGGC Left flanking sequence: Indices 24889309 -- 24889808 TATAACTTATCGTAAACAACGCGCTTAAATCTTTATAAATCACAAAGAGTTTTCTAAGCTTTTAT TAAAGTGACTGTTTTATTTATAAACATTGAATTCTTGTAGAAAACCATATTTTTTAGAGTGAATA CAATCGATGGTTGCGGGGCAAACATCGATGCTGCCAGTTATCTGTATACATCGATAGTATCGACT AACCATCGGCTTCTCTTCCAGCTCTAGCATTCACCATTTCCCTTTGTTTGCGGCGGCGGCGCTCG TTGTACGGCCGTGCGAATCGAGAGAAAAACGCATAAAATCGGGGAAAGTGCACTAGCCCCGTGCT GCAATGTAAATAAACAAGGCTCTGATGAGCAGTTGCCGATCAAGTGCTTCGATTAGCCAGCAAAA TGTGCGTACAAGGCGAGAATCAGTGACGAAAACAACAACTACGTGCTGCTGCGTTCATTGACGTG ACGCGCGAGAGTGAATGTGTGCGTGCGTGTGTGTTTGTGTGTGTG Right flanking sequence: Indices 24889823 -- 24890322 GAGTGAGTGTGTGCGTGCTCCCCATATGTGTGTTGTCGAAAAAGCGTTTTTCAAACCACAAGCCA GCAACAAACAAATCACAACAGCACGTCACAAATTGCAATAGAAGCAGAAGCAGCAACACCTCAAA TCAAAAAAAGGCCCCACAACAACAACATCTGTCGAGTTCTCAGAGAGTGAGAAAAAGAAAGAGCG CGTTAGAGTGAGAGAGGGGCAAAAAGAAAGTCAACAGTCGCGTGTGAAATGAAATTCGAAAGATG TCCGCGTGTGTGTGTGTTGAGTGTATAGAATTGAGTAAGAAGCAGCGCGGCAAAAGGAAATAAGC AAAAGCAATAGCCAAAAGGAACCAACAACCAGCAGCAACAAATTACCCAATGAATCAATCAAAAT TGGCATAATTTGCATTCGCCGACGTTATTGTCTATAAAACCCCCCTGAAAAAAACACCACACAAC AGAAGAGCAGCACAAATCTTTTGCCAATGAGTCGCAGACAGTCAT Found at i:24891044 original size:7 final size:7 Alignment explanation
Indices: 24891028--24891044 Score: 27 Period size: 7 Copynumber: 2.4 Consensus size: 7 24891018 TATTACTTTT * 24891028 TAATAAG 1 TAAAAAG 24891035 TAAAAAG 1 TAAAAAG 24891042 TAA 1 TAA 24891045 GCTTTGGAAA Statistics Matches: 9, Mismatches: 1, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.65, C:0.00, G:0.12, T:0.24 Consensus pattern (7 bp): TAAAAAG Left flanking sequence: Indices 24890528 -- 24891027 CGCTGGCTGCGCAGCTGCTCCCAAACACTTGAACTTTGTAAACACCTCCGACACTCCAACAATTC GGCCATTGTACAGTGACAAAAACCAGCGTAATTATGAGTCTTCATCAAAAAGCCAAATCACTGAA AACTATAAATGAATGCAAGGGGCGGCCATCCGCTCTCCACTCGCTCGCCATTCTATTTTTAACCC GACTTTCATCACTCTCGAGCGGGGAAAAGAGAAAGTATCTGTCACTGTCTTAAGCAGATGTAAAT GTGCCTCATATAACTATAGCCTTTATGCACTGTTTGTCCATGTGTGAGTGTTGTCCGGGAAGAAA GCAGCAGATCAAAAATCACCAACTTTGGTTTGTTTGTGTTTTGTTTTCGCCAGGGCAATTAGTAT TATGGGCGAATAATACCATGGTAAAAGCCAGACGCTTGAAGTTTGGTCTGTTTTGTTTGAGGAAC TTATCGGAAGTTCATAAAGATTGAGCCAAATTTATTATTACTTTT Right flanking sequence: Indices 24891045 -- 24891544 GCTTTGGAAAATGCATTAAGCAGCAAATGAGAAAGGATAGGTGGTACATGGATGAGACTATTGTA ATCCAGCTATTAAGCTAATTAGCCGTCAATCTATTAAGCCAGCTTTACGAATATTTATGCTATCA TTTAGATTTAGTGTTGGAAAGAAATCTATTTCCCCCAATCCTAGGGCCGCAATTTGCACTGCAAT GCTGGCACACAACAACAATAGTAATGGGCTTAGACGTAGCTGCTTGGCGTTGAGGAATGCTGTCC ACTTATCAGCTGCAATTAGCAATGAATGTTGAATGCAAGCCGTGCATCGCTTTGGGAACTCAGAC TGTCCGGCCCCTCCACACACTAACATACACACACTACAACTCACATACAAATGCTAACACATACT CCCACGCTGTGTTCCTTTAATTTATTTATAACATTCAATGTAAACTCTGCTCAAGCGCCAGAGTC AAACGGCACAAACAATTTTCGATGCAAGGCAACAAAAACAGGGGC Found at i:24893285 original size:10 final size:10 Alignment explanation
Indices: 24893270--24893292 Score: 39 Period size: 10 Copynumber: 2.3 Consensus size: 10 24893260 CGAAGCAGCA * 24893270 AAAAGTTGTC 1 AAAAGTTGCC 24893280 AAAAGTTGCC 1 AAAAGTTGCC 24893290 AAA 1 AAA 24893293 GCAACCCATC Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 10 12 1.00 ACGTcount: A:0.48, C:0.13, G:0.17, T:0.22 Consensus pattern (10 bp): AAAAGTTGCC Left flanking sequence: Indices 24892770 -- 24893269 ATAATGATGAAAAATCCTGACTCAGCTCGAGTTTCTAACGATGAGTCATTAGAGTTACTTGTATG CAAAGTAATATGTACGTGTATTTACCTAAAAGGGCTAGTACTCGTGCCTTAAAGAGCTTAACTTG AACTGGTTCCTCGTGCTCGGGGTATTACACTCGTTATAAATGGCATTTTACTTATCATGGAAGCT ACTCACTCCCCTTCCTCCACCCCAGACGATATCCCAGCACTTTCTCAGCGAACTGGAGCTGTTAT CAGTGCAATTGTTGCTTTGTTGCGCCTAATTGCTCTTGGCTTTTTCGCTTTTTTGCAATGACTTA CGAGTGCCAAACGGGGCCAAGAACAATGCTGGCGAATGGAAATTTGATTAGCATAAAGCAGGCGG ACTCCCGATGGAAGGACTCCAGTGCCAAACATCGTCGGGCCCGAGTCACATCATTAATCTTGGAG CACAAAAGGGTCTCGACCGCCTTCTCGGCGCGCTACGAAGCAGCA Right flanking sequence: Indices 24893293 -- 24893792 GCAACCCATCGTGCTATTAACTCCCCTCTCGCTCGCCCAGTACTTTTGGCCCACTCGCACTCTCG GTTTCTACGTTTTTCCCTAATGAAATTGCTTTGATTTCTCGAAAAGCGCGTAAAGTTTTCTCATC TAGCGTCGAGACTTTTGCAGCAGCAAATTACACGAATCCTTGTGGCTTTTCCTTTTCTGGGTTTT TCTATAGGTTGACACTTTTTTTTTGCGGGTTTAATAACGATGGTTGCCATTAATAACAAAGTTAT ATATTCCTAGCGTTTCGCATGAATAATAATATATTTATACTACAAAAACACATTTCACCACCTTA TGAATATGTTATGCATCTTTACAATTATGGAAAACAACTATTCCTTATTATATATTCGCTTTGAT AGTTAAATAAGCTTTTTGGACTGGGATAATGCGACAGCAAGATAATCAAATAATTCCCGAAAATG CGGCGAGTCCTTGGGGTTGGCCATTTGGCGGTTGAGTTAAAAAGT Found at i:24894662 original size:7 final size:7 Alignment explanation
Indices: 24894650--24894663 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 24894640 GTTTAGTTAC 24894650 TTTCAAA 1 TTTCAAA 24894657 TTTCAAA 1 TTTCAAA 24894664 CTGGTCTAGA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43 Consensus pattern (7 bp): TTTCAAA Left flanking sequence: Indices 24894150 -- 24894649 GATAAAATGAATAGTTATGAAGTGTTTAAATGATACTTCTAATTTGCTCGAGTTTGTAATATAGC AAACACGAAAAAAAACCAATCGATGTCATTATATTTTTACTTAATATCTAATTAATGCAAGGAAA GAAATCGAAGATATTAAACATATAACTAACGCACAATTGTAGGCAACAATCCCTCCACTCCTTAA TTGCGTTTACCAACACTGCCCAGCAAGTCGCCGGCTCTATGTCGTTCATTGTTGTAGAACATTTG AAATATTTCCCCCGCCTAATCGACCAATTTCCGATGCTGTCCATGTATCATCCCAGCCCGGAATC TCCACTGCCGGTTGCCAGTGGCTGAACTCAGCAGAATGGTGGCCAAAAGGGGGTCAGACAGGCTG GGCATAAATTATTTCAGACCCCCGAATGTCTAATATGCCGGCGACGGATATGCGAATGCTATCCG CCAGTTGAACGTGCACAGTACAATTAGGGATGGCTGTTTAGTTAC Right flanking sequence: Indices 24894664 -- 24895163 CTGGTCTAGAAATACATTTCAAATTTCAACTTCTAATGTATCGTTTATCAGAAAAGTTTCATTTA AGTGCACCCCCAAGCATCATAATAAAGTGTAAAATTGAATCAACTTTGGGTCTCTAATTTCCCAA CCGCCAATGTTGTTTTCCGAGCGAGAGTTGGCCACTCATCCCCCTCTAATCGATTCGGTAACAAA TGTTGTTGCTATCCGTGCTGTGCTGTTTTCATTAGGGGTTATTCCGGTTTGATCTGCAGCAGAGG ACAAACAATGAAGGTGGAATGGAGCCGGCAGTGGGAACACAAATCCAAACTAAATCCCAATTCCA GACCAGAACTCGTTGCTCACCTTCGTTCGCAGGACGAGCACACACACACACACACACACACACAA ACACTCGCGCACACATGCAAGAGGTCCTTTCCTCTCCGCGTCCGTTTCATCTGTCATTTATCCCG TTTGTTTCTCCGCTTGTTGTTGTTATTGCTGCTTGCTGTGCGTGT Found at i:24894691 original size:7 final size:7 Alignment explanation
Indices: 24894679--24894692 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 24894669 CTAGAAATAC 24894679 ATTTCAA 1 ATTTCAA 24894686 ATTTCAA 1 ATTTCAA 24894693 CTTCTAATGT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43 Consensus pattern (7 bp): ATTTCAA Left flanking sequence: Indices 24894179 -- 24894678 ATGATACTTCTAATTTGCTCGAGTTTGTAATATAGCAAACACGAAAAAAAACCAATCGATGTCAT TATATTTTTACTTAATATCTAATTAATGCAAGGAAAGAAATCGAAGATATTAAACATATAACTAA CGCACAATTGTAGGCAACAATCCCTCCACTCCTTAATTGCGTTTACCAACACTGCCCAGCAAGTC GCCGGCTCTATGTCGTTCATTGTTGTAGAACATTTGAAATATTTCCCCCGCCTAATCGACCAATT TCCGATGCTGTCCATGTATCATCCCAGCCCGGAATCTCCACTGCCGGTTGCCAGTGGCTGAACTC AGCAGAATGGTGGCCAAAAGGGGGTCAGACAGGCTGGGCATAAATTATTTCAGACCCCCGAATGT CTAATATGCCGGCGACGGATATGCGAATGCTATCCGCCAGTTGAACGTGCACAGTACAATTAGGG ATGGCTGTTTAGTTACTTTCAAATTTCAAACTGGTCTAGAAATAC Right flanking sequence: Indices 24894693 -- 24895192 CTTCTAATGTATCGTTTATCAGAAAAGTTTCATTTAAGTGCACCCCCAAGCATCATAATAAAGTG TAAAATTGAATCAACTTTGGGTCTCTAATTTCCCAACCGCCAATGTTGTTTTCCGAGCGAGAGTT GGCCACTCATCCCCCTCTAATCGATTCGGTAACAAATGTTGTTGCTATCCGTGCTGTGCTGTTTT CATTAGGGGTTATTCCGGTTTGATCTGCAGCAGAGGACAAACAATGAAGGTGGAATGGAGCCGGC AGTGGGAACACAAATCCAAACTAAATCCCAATTCCAGACCAGAACTCGTTGCTCACCTTCGTTCG CAGGACGAGCACACACACACACACACACACACACAAACACTCGCGCACACATGCAAGAGGTCCTT TCCTCTCCGCGTCCGTTTCATCTGTCATTTATCCCGTTTGTTTCTCCGCTTGTTGTTGTTATTGC TGCTTGCTGTGCGTGTTTTTTTGGCTCTCTGGAGAGTCGAGAGTT Found at i:24895533 original size:8 final size:9 Alignment explanation
Indices: 24895514--24895531 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 24895504 CCTCCTTCGC 24895514 TGTTGTTTT 1 TGTTGTTTT 24895523 TGTTGTTTT 1 TGTTGTTTT 24895532 GTGTGTGTGT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.00, C:0.00, G:0.22, T:0.78 Consensus pattern (9 bp): TGTTGTTTT Left flanking sequence: Indices 24895014 -- 24895513 TTCGCAGGACGAGCACACACACACACACACACACACACAAACACTCGCGCACACATGCAAGAGGT CCTTTCCTCTCCGCGTCCGTTTCATCTGTCATTTATCCCGTTTGTTTCTCCGCTTGTTGTTGTTA TTGCTGCTTGCTGTGCGTGTTTTTTTGGCTCTCTGGAGAGTCGAGAGTTTTTGATTTTCGACATG TCGCTGCTTCTTCAACCCTTTTTTCAATGTATTTGTTTTTGCTCGTATGTATTGTGTGCGTGTGG AAAGTTTTGCATTTTTATTATAGATAATTTGTGTACAGGTTTTTTGCGGCTGCCGCGCAAACTCC CAACTTTTGAACCTTCTGGTTGCTCCACACGTCCGTCCCCACTTCCGTTTCATCCTCGTGCTCAT TCTCGTTCTCATCCTCGTCGTCGTCGTCGTCCTGTCTGCACTCTGCATATGTTGGATGTTGTTTA TTTCCATTCTCACCCCCGCCCACTTCCATCCCCCTCCTCCTTCGC Right flanking sequence: Indices 24895532 -- 24896031 GTGTGTGTGTGTTTGGGGAGCCATAATTAATTTTCGACGTTTGCCTGTGAAGTCTGGCAACGTTG CAATCAACCGCACAAGTTCTCTACATTAGAGAAAAAGAGTGAGAAAGGATAGTGATAGAAAGAGA GCGAGCGAGAGGAAAAGAGAGAGAGAGCTCAGGGAATTGTGTATTTATTTGTTATTAATGGAAAA ATTCGAGAAAATAATTGCACATGCAAAAGTCTATCTCAGAGAATTCTTAATTATGCTCCTACAAT CTTGTTATCGTAAAAAATCCATAAACTATGTATATAATCACAAAATCTATATAGATTATTTAGCA CAAAATTTAAAGCACGCAAAAAGTAATGAAATTTTCAATTACGATGTGTGAAGCAGGATTAATTT AAATGACAGCAGTCGATGCAGTTATATCAGATATATGCACATTCGGCTTTCAAAAGAACAACCAC CAAGGTTGCTAAACATATGCCGCCAAACAAAATCTGGTTGTCAAG Found at i:24896436 original size:8 final size:8 Alignment explanation
Indices: 24896416--24896443 Score: 42 Period size: 8 Copynumber: 3.6 Consensus size: 8 24896406 GTGTGCACTC 24896416 TGCATTT- 1 TGCATTTG 24896423 TGCATTTG 1 TGCATTTG 24896431 TGCATTTG 1 TGCATTTG * 24896439 AGCAT 1 TGCAT 24896444 GGTACAATGC Statistics Matches: 19, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 7 7 0.37 8 12 0.63 ACGTcount: A:0.18, C:0.14, G:0.21, T:0.46 Consensus pattern (8 bp): TGCATTTG Left flanking sequence: Indices 24895916 -- 24896415 TAATTTAAATGACAGCAGTCGATGCAGTTATATCAGATATATGCACATTCGGCTTTCAAAAGAAC AACCACCAAGGTTGCTAAACATATGCCGCCAAACAAAATCTGGTTGTCAAGTAGGATTAGCAGAT TTTTTACCTTATCATCCCTTTTACGAAATATTACGTTTGCATTGTATCGAACACAAAATAACAGT TGTCATTACAGCCTTTTCCCTGTTGCGACTCCAGTTTATGAGGCGTTGTTATTGGCTCGACATGT TTCCCGGCTGACAAAGTTTGGCCAAAAGTGCAAACACCCCATCCACGCGCACTCAAAACATCAGC ATGCATTTCCGATGCTCAGCCAAGTTGCATTATTAACAAAATTTTACCGCTTGACGAGCTCTCCA AATCGAAATCGGGGCGTAGAAGGGGAAAGCCCCGGGCATCTTACTGCACTCCAGCGGATGCATTT TGCATGTCATCCAGTTTCAACGGGGGATCGCTCATGTGTGCACTC Right flanking sequence: Indices 24896444 -- 24896943 GGTACAATGCCACTTGACATTCGCATTCACATTGGTCGATCCACGGGCGGAGCGGGGAATCCCCC GGTTGTTAATGGGTTAATGGTCTTTGAATGTTCAACTTGGGGTTCTGCCAGCTCATGCATTTCTC CGCAAAGAGCGACGGGGGAAATGCGGTGTATCTAATTTAGTTATTTGGTTATTTTCGAGCTAAAA CTACTCGAATTCTATATTCTAATTTATAGTTTGGTATTTAGATAATTGCGTACATTTATACACAA ATTAATGACACATTCTGAGTTGACTGGTTGGATAGCAACTCTTATAAATTAGAAACACACATTTG ATGTGTGAATTTTATATATTGTGGATTTTTATATCACCATAAACAATGCTAAAAAGTGCAATTAA TTACCGCTTACCACCTCGATTAGCAACAACAGCCAGAAAATAATGAAACGCACTGTTTGCACACC CAAGTACACATTCATATTTTAATGCATGTTTGAGCATTATGTCGG Found at i:24896526 original size:8 final size:8 Alignment explanation
Indices: 24896513--24896528 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 24896503 TCCCCCGGTT 24896513 GTTAATGG 1 GTTAATGG 24896521 GTTAATGG 1 GTTAATGG 24896529 TCTTTGAATG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38 Consensus pattern (8 bp): GTTAATGG Left flanking sequence: Indices 24896013 -- 24896512 ACAAAATCTGGTTGTCAAGTAGGATTAGCAGATTTTTTACCTTATCATCCCTTTTACGAAATATT ACGTTTGCATTGTATCGAACACAAAATAACAGTTGTCATTACAGCCTTTTCCCTGTTGCGACTCC AGTTTATGAGGCGTTGTTATTGGCTCGACATGTTTCCCGGCTGACAAAGTTTGGCCAAAAGTGCA AACACCCCATCCACGCGCACTCAAAACATCAGCATGCATTTCCGATGCTCAGCCAAGTTGCATTA TTAACAAAATTTTACCGCTTGACGAGCTCTCCAAATCGAAATCGGGGCGTAGAAGGGGAAAGCCC CGGGCATCTTACTGCACTCCAGCGGATGCATTTTGCATGTCATCCAGTTTCAACGGGGGATCGCT CATGTGTGCACTCTGCATTTTGCATTTGTGCATTTGAGCATGGTACAATGCCACTTGACATTCGC ATTCACATTGGTCGATCCACGGGCGGAGCGGGGAATCCCCCGGTT Right flanking sequence: Indices 24896529 -- 24897028 TCTTTGAATGTTCAACTTGGGGTTCTGCCAGCTCATGCATTTCTCCGCAAAGAGCGACGGGGGAA ATGCGGTGTATCTAATTTAGTTATTTGGTTATTTTCGAGCTAAAACTACTCGAATTCTATATTCT AATTTATAGTTTGGTATTTAGATAATTGCGTACATTTATACACAAATTAATGACACATTCTGAGT TGACTGGTTGGATAGCAACTCTTATAAATTAGAAACACACATTTGATGTGTGAATTTTATATATT GTGGATTTTTATATCACCATAAACAATGCTAAAAAGTGCAATTAATTACCGCTTACCACCTCGAT TAGCAACAACAGCCAGAAAATAATGAAACGCACTGTTTGCACACCCAAGTACACATTCATATTTT AATGCATGTTTGAGCATTATGTCGGCCGCCAGTTATTATGATAAAACCGAATTCAAGTTTGCTTT TCGCCTTCCGCTACGCTTCGTTATTTCCATGCCCCTCGGCTGGGT Found at i:24896624 original size:8 final size:8 Alignment explanation
Indices: 24896608--24896627 Score: 33 Period size: 8 Copynumber: 2.5 Consensus size: 8 24896598 GGTGTATCTA 24896608 ATTTAGTT 1 ATTTAGTT * 24896616 ATTTGGTT 1 ATTTAGTT 24896624 ATTT 1 ATTT 24896628 TCGAGCTAAA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 8 11 1.00 ACGTcount: A:0.20, C:0.00, G:0.15, T:0.65 Consensus pattern (8 bp): ATTTAGTT Left flanking sequence: Indices 24896108 -- 24896607 AGTTGTCATTACAGCCTTTTCCCTGTTGCGACTCCAGTTTATGAGGCGTTGTTATTGGCTCGACA TGTTTCCCGGCTGACAAAGTTTGGCCAAAAGTGCAAACACCCCATCCACGCGCACTCAAAACATC AGCATGCATTTCCGATGCTCAGCCAAGTTGCATTATTAACAAAATTTTACCGCTTGACGAGCTCT CCAAATCGAAATCGGGGCGTAGAAGGGGAAAGCCCCGGGCATCTTACTGCACTCCAGCGGATGCA TTTTGCATGTCATCCAGTTTCAACGGGGGATCGCTCATGTGTGCACTCTGCATTTTGCATTTGTG CATTTGAGCATGGTACAATGCCACTTGACATTCGCATTCACATTGGTCGATCCACGGGCGGAGCG GGGAATCCCCCGGTTGTTAATGGGTTAATGGTCTTTGAATGTTCAACTTGGGGTTCTGCCAGCTC ATGCATTTCTCCGCAAAGAGCGACGGGGGAAATGCGGTGTATCTA Right flanking sequence: Indices 24896628 -- 24897127 TCGAGCTAAAACTACTCGAATTCTATATTCTAATTTATAGTTTGGTATTTAGATAATTGCGTACA TTTATACACAAATTAATGACACATTCTGAGTTGACTGGTTGGATAGCAACTCTTATAAATTAGAA ACACACATTTGATGTGTGAATTTTATATATTGTGGATTTTTATATCACCATAAACAATGCTAAAA AGTGCAATTAATTACCGCTTACCACCTCGATTAGCAACAACAGCCAGAAAATAATGAAACGCACT GTTTGCACACCCAAGTACACATTCATATTTTAATGCATGTTTGAGCATTATGTCGGCCGCCAGTT ATTATGATAAAACCGAATTCAAGTTTGCTTTTCGCCTTCCGCTACGCTTCGTTATTTCCATGCCC CTCGGCTGGGTTTTTGGATGCGAAACGTTTGGGTTCTGCACCGGGTTTGGTTCACTCCCTCGAAT GCCTCATTGTGAATTCAGCGGGTAAACATTTGCACAAGTGTCCGG Found at i:24899756 original size:7 final size:7 Alignment explanation
Indices: 24899744--24899757 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 24899734 AAACTGAATT 24899744 TCGCCAA 1 TCGCCAA 24899751 TCGCCAA 1 TCGCCAA 24899758 CAACAAAAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.43, G:0.14, T:0.14 Consensus pattern (7 bp): TCGCCAA Left flanking sequence: Indices 24899244 -- 24899743 GAGAGCTGCTGATGCAGTGCGAAAAAGTTATAGTTGGGGAATGTCTATATGGCCAGGCAGGAGAT GAAGGGAGCACAGATTGGAGTTTGCAACACCATGGGTGGTACATACAAACTTTATTTGGCCACTC ATCACAGCCTAAACAATTTCAATTTGGAAAAGTAACGCTGTAATTGCTTCTAAATGAAGATCGAT CAATTGGTTTCTGATTTTTGGAAATCCAGCTTTGCTTCCGTTCAGAATAACTCTTAATTTACAAA ATTGGCGCCGTTTAAGAAGTCAAAAGTGGAACATAACAAGTAAAAACAATTTTATGTTTCGACCA TCAAATCGAAAAGTTGTGATTTCTTAATGGAGCAAGTGCAATTAATATGTATCTGTTAACTTCCG GGTGCCTGCAATACATGGGAATGTATCTGTGAGTGCGTACGTGTGATGCATTCCACTCCACTCGC TCTGCATATTGCACTTTGCTTCGAAACGAAATTCCAAACTGAATT Right flanking sequence: Indices 24899758 -- 24900257 CAACAAAAAAGAGAGCGAAAGAGCGAAGAGGCGCATGAGAGGGAGGCAGAGCAGCGGGAGCAAAG CTCATCCATTAGTTGTCGTCACACACAACCTGAGATATATTCTCATTGTTCTTGCTTCTGTTTCT TCTTTGCCTCTCCTTGCTCTTCTTAATTCTATCAGCACGTATGTGTTTGTGTATCTGTCATTGTG TTTGCTTAGGTAACGCGGGAGAGAGTGAGATGGTCAGATGGGGCTGAGCCAGCGAGAGATTGACA GATAAACCTGCGATGAGGTGAGGTTATGTTTACTGGACCACCTTCGCAGGTTCGCTCAAACAAAT ACGCACACAGATACAGATTCATATGCAGATACAGATACCCTCTCTCCCTCTCTTTTCCAGTCTGT GGAAGGCAATTGACCGATGCTGCTGAAAGCGCATCTAAAAAGGTAATTTGCCTCACTTTTGAGGA TACTTCACATCATTCGCTGTGAAAAGAACCTTTTTTTGTTCTTCC Found at i:24899782 original size:8 final size:8 Alignment explanation
Indices: 24899769--24899784 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 24899759 AACAAAAAAG 24899769 AGAGCGAA 1 AGAGCGAA 24899777 AGAGCGAA 1 AGAGCGAA 24899785 GAGGCGCATG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.12, G:0.38, T:0.00 Consensus pattern (8 bp): AGAGCGAA Left flanking sequence: Indices 24899269 -- 24899768 AGTTATAGTTGGGGAATGTCTATATGGCCAGGCAGGAGATGAAGGGAGCACAGATTGGAGTTTGC AACACCATGGGTGGTACATACAAACTTTATTTGGCCACTCATCACAGCCTAAACAATTTCAATTT GGAAAAGTAACGCTGTAATTGCTTCTAAATGAAGATCGATCAATTGGTTTCTGATTTTTGGAAAT CCAGCTTTGCTTCCGTTCAGAATAACTCTTAATTTACAAAATTGGCGCCGTTTAAGAAGTCAAAA GTGGAACATAACAAGTAAAAACAATTTTATGTTTCGACCATCAAATCGAAAAGTTGTGATTTCTT AATGGAGCAAGTGCAATTAATATGTATCTGTTAACTTCCGGGTGCCTGCAATACATGGGAATGTA TCTGTGAGTGCGTACGTGTGATGCATTCCACTCCACTCGCTCTGCATATTGCACTTTGCTTCGAA ACGAAATTCCAAACTGAATTTCGCCAATCGCCAACAACAAAAAAG Right flanking sequence: Indices 24899785 -- 24900284 GAGGCGCATGAGAGGGAGGCAGAGCAGCGGGAGCAAAGCTCATCCATTAGTTGTCGTCACACACA ACCTGAGATATATTCTCATTGTTCTTGCTTCTGTTTCTTCTTTGCCTCTCCTTGCTCTTCTTAAT TCTATCAGCACGTATGTGTTTGTGTATCTGTCATTGTGTTTGCTTAGGTAACGCGGGAGAGAGTG AGATGGTCAGATGGGGCTGAGCCAGCGAGAGATTGACAGATAAACCTGCGATGAGGTGAGGTTAT GTTTACTGGACCACCTTCGCAGGTTCGCTCAAACAAATACGCACACAGATACAGATTCATATGCA GATACAGATACCCTCTCTCCCTCTCTTTTCCAGTCTGTGGAAGGCAATTGACCGATGCTGCTGAA AGCGCATCTAAAAAGGTAATTTGCCTCACTTTTGAGGATACTTCACATCATTCGCTGTGAAAAGA ACCTTTTTTTGTTCTTCCCTTGTTGGTGTTTAGCTACCTGCTCTT Found at i:24900133 original size:8 final size:8 Alignment explanation
Indices: 24900120--24900135 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 24900110 GATACAGATA 24900120 CCCTCTCT 1 CCCTCTCT 24900128 CCCTCTCT 1 CCCTCTCT 24900136 TTTCCAGTCT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38 Consensus pattern (8 bp): CCCTCTCT Left flanking sequence: Indices 24899620 -- 24900119 TCTGTTAACTTCCGGGTGCCTGCAATACATGGGAATGTATCTGTGAGTGCGTACGTGTGATGCAT TCCACTCCACTCGCTCTGCATATTGCACTTTGCTTCGAAACGAAATTCCAAACTGAATTTCGCCA ATCGCCAACAACAAAAAAGAGAGCGAAAGAGCGAAGAGGCGCATGAGAGGGAGGCAGAGCAGCGG GAGCAAAGCTCATCCATTAGTTGTCGTCACACACAACCTGAGATATATTCTCATTGTTCTTGCTT CTGTTTCTTCTTTGCCTCTCCTTGCTCTTCTTAATTCTATCAGCACGTATGTGTTTGTGTATCTG TCATTGTGTTTGCTTAGGTAACGCGGGAGAGAGTGAGATGGTCAGATGGGGCTGAGCCAGCGAGA GATTGACAGATAAACCTGCGATGAGGTGAGGTTATGTTTACTGGACCACCTTCGCAGGTTCGCTC AAACAAATACGCACACAGATACAGATTCATATGCAGATACAGATA Right flanking sequence: Indices 24900136 -- 24900635 TTTCCAGTCTGTGGAAGGCAATTGACCGATGCTGCTGAAAGCGCATCTAAAAAGGTAATTTGCCT CACTTTTGAGGATACTTCACATCATTCGCTGTGAAAAGAACCTTTTTTTGTTCTTCCCTTGTTGG TGTTTAGCTACCTGCTCTTTATTGACCAGTGTTCGGGATTGATGGGCTAAATTATTTCACATTAA TGTGGGAACAATTCCCAGGGGAGAAAAGGAGAAGAAATTATACAGTGTAATCGAAGATGATCGTT AGGCAAGTGGGTAATCTTGCGATAAATAATCCAGCGATTATTGCTTATCGGATTTCAAAATCCAT ACCCTATACATTTTGTATAATTTTTATAGTGACTTTATTTTCTCCAACTTTGAAGTGACCTTTTA AACTCTGCGCGCTACGAAAACGTGGGTGCCATGATCTTGATCTTACTCGTTGTCTTATACAATCG TAGCTAACAAAACAGTCATATGTTAATTACCAGATATGCTAATTG Found at i:24900778 original size:7 final size:7 Alignment explanation
Indices: 24900766--24900789 Score: 41 Period size: 7 Copynumber: 3.4 Consensus size: 7 24900756 ACAAGTTTTC 24900766 TAACGAA 1 TAACGAA 24900773 TAACGAA 1 TAACGAA * 24900780 TAACAAA 1 TAACGAA 24900787 TAA 1 TAA 24900790 TCTGTACCAC Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 7 16 1.00 ACGTcount: A:0.62, C:0.12, G:0.08, T:0.17 Consensus pattern (7 bp): TAACGAA Left flanking sequence: Indices 24900266 -- 24900765 TGTTTAGCTACCTGCTCTTTATTGACCAGTGTTCGGGATTGATGGGCTAAATTATTTCACATTAA TGTGGGAACAATTCCCAGGGGAGAAAAGGAGAAGAAATTATACAGTGTAATCGAAGATGATCGTT AGGCAAGTGGGTAATCTTGCGATAAATAATCCAGCGATTATTGCTTATCGGATTTCAAAATCCAT ACCCTATACATTTTGTATAATTTTTATAGTGACTTTATTTTCTCCAACTTTGAAGTGACCTTTTA AACTCTGCGCGCTACGAAAACGTGGGTGCCATGATCTTGATCTTACTCGTTGTCTTATACAATCG TAGCTAACAAAACAGTCATATGTTAATTACCAGATATGCTAATTGTGTTTATTTCCTGGTGCTAA TCCAATTTCTTTTTGTTTTGTCTTTTCAGGTATGTAAATAGCTCATAATTACGCGCCACAAAAAG TCGTAGATGGATATTTCTGGATATGAAAGTTGGTAACAAGTTTTC Right flanking sequence: Indices 24900790 -- 24901289 TCTGTACCACAAGTTTAACGACCTTTTGGGGTTACTTAACATTTAATTGGGGTAAAACGAGGGGC CATAAACCCAAGTAATTATGGCAAGGAGATGGCGTCAAGTGAAGAAAGAGATTTCCAAATGATGT ACAACCTGAACGTGACAGACTAATTGACGTAGAAGAGAGTATCCTTGGCCGAAAGTCCTTGATGC CTGCTTATTTATTTATAAAGCAATTTTTAAAGGACGAGGCGGCCGCATAAAGTGGCATCATAAAA ACATGGCCAAGACGTCTGTGGAGCAATCGAGGAAGTGGATTAAAACTAATTTCCTACGTAATGCA CACACACCATGAAGCGGGGGGGTGTATAACTTGGGGACTCCGGCGGAGTGGCAGTCACTCAACTT GCCTGAACTCAGCACAGTTCGGTTCAGGCATTTGGCCCCAGAGAACGACACAAAGCAATCAAAGC GCAACCAACTGGGCGAACCGACCAACTTCCATTTCCCGCCCCTCG Found at i:24902467 original size:7 final size:7 Alignment explanation
Indices: 24902457--24902471 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 24902447 TTATAAAAAA 24902457 TAAATTG 1 TAAATTG 24902464 TAAATTG 1 TAAATTG 24902471 T 1 T 24902472 TTTATTCGTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47 Consensus pattern (7 bp): TAAATTG Left flanking sequence: Indices 24901957 -- 24902456 CAATTTTGTTGCAGATAATTTGCAATCAAATATTAATTGAAGCATTCTTTTTTTGAGTGTCGGTA ATAAAATCCAAACGGTCCCCTGTTTCTACGCCTCCGTTTTTATGGCTAATATAATTTGGCACTTT GATTGCTGCAAGACGAGGCGGTGCGAAATAAATGATTACTTGGCATGTCGAGGCAATGAACCCCT GACAATATAGATCCGAATTGCCATACAAGTTGACTCGGTCAATTAGCACAAAAGTCCGATGGCCA AAAGGAAACGCTAGGCGTTAGCAACCACCAAATGATAGCGGTGGTAAAAATAAATGCAAATTAAA TAAAAATGCGTTTGAGCAGGCAACTAGCCAAAATATTTAGATTATAAACTATTTTTCCGCAGCGA ATGTGCTGTATCTTTTATTTGCTTACACCTCTTTATTGCGCCATGCATGAATGGACCGATATCGA ATTTTATTTTTGGCAAGCGCTCGAAATTCGCCGAATTATAAAAAA Right flanking sequence: Indices 24902472 -- 24902971 TTTATTCGTTTCCCATTTGCTGTTTTTCTTATTTTCTGCTGACTGTTAATAGGCCAACTACAACA TTTTTCGCGGCTGTCAGCATTTCTCACTTCTGTTTTTCCGATTTCCACCCACCCACTTGACCTGA CCCATTGAAAAGGGGGGTTCGCAATTAATTGCCATCATCTGCCTACATTTTCGAGTGTATTTAGG TGTGCAAGTTTGATTGTGCGAATCATTTTTAGAGGCTTACAAAGCATTTTCCGACTGTTTGATTT GTTTTCGACTCATTTCCAATGGTTCCATGCGGGCTGAGAACTATGCAAATTTGGCGAAAATTGTT TAACTTTTGTGCTGAAATTAATGTCTTTATAAATACAGAGCCAAATAAAATTATAATATCAAGCA AAGATTTAAAAACAAAATCTACCATATTAAAATGTTTTGTTTTTGTAAGTATAGAATTTAAGTAG AATTTATTAAAGCATAGCAAACCTTATGCATGTTGAAAAGTAGCA Found at i:24904662 original size:7 final size:7 Alignment explanation
Indices: 24904650--24904664 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 24904640 GTTTGTCATA 24904650 TTGCAAT 1 TTGCAAT 24904657 TTGCAAT 1 TTGCAAT 24904664 T 1 T 24904665 ACTCCTTGTC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.27, C:0.13, G:0.13, T:0.47 Consensus pattern (7 bp): TTGCAAT Left flanking sequence: Indices 24904150 -- 24904649 CGGTCTGTTTTCCTCTTTGGTTCGTTTGTTGTCTGCAACACTTTGATTTTATCGTCTAGAATTTA TTTTCACATCCTTTTTGTCTTTCATTTGTCGTCTCGACGTTTCATATTTAATGTTTTCTTTGGTC CGAAGCAAAGATAAGGCGAGATTTTCTAAGACTGTCCTCGGGCAGGATAGTATGATGCCTTTTTC TTGTTCGGCCAAATCTTAAAATTGAGTGATAAATTTTCCAAAAACTGCACCTTCTACTTTGTTTA GGTGCATTATAATCGTTTAGGGATTTTTCGAATTATAAGCATGGGTTCAATTATTCCATCTCTTG AAGTCCTGACAGCAGGATCTCTTAAAGGAAAAGCTCAACACTCCTTAGGATGCCAAACTCTGTGC AACTAACTCTCTGTGCGAATCATTCGTTGCCTAGGGCCTCGTTTTATTTATGCAGGTGTGTTCGA GATATGCAACTGCCCACCGTCGTGTATCCTTGTGCGTTTGTCATA Right flanking sequence: Indices 24904665 -- 24905164 ACTCCTTGTCAGACCGCAGATACACACACAGATACACCAAATGAATGGACCGGGGGTCCTTTGAC AGTGCTGCCTCCATTTCCCCAGCTCGTCCTTTGTGTTCGCGTGCTGTGCTGTCTGCGGCTGTTGT GTTTACCAGCGAGAGGAGAATTCAAATTATTTGCGTTTATTTTCGAGAGCACATTTAATTAATAA CCAGGCGGTGATTATCCCCTACACCGAACGCTCTGGCATATGACACTTGCGCGGTGGCTCGAATT ACTGAAACCTGAATATAACTCGGGGCACGCGGCATAAAGAATCAATGTTTCTGTTTTGCCGAGCT GTGTGGAAAATTAAACATAGGGAATAAACAAAAACAGGAAATAAGAACACCGCTTGAAACCGGCG TTTACATACCCTTAAGATATTTGTCGTTCGATTTTAGTAGTGATATCCAGCTCTAAACTTCAAAT GAGCATTGTAAGCAATACTATAGTTTTGAGTTGATTAAGTTAGCT Found at i:24905207 original size:7 final size:7 Alignment explanation
Indices: 24905195--24905208 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 24905185 AAATCGAATT 24905195 TTTGAAA 1 TTTGAAA 24905202 TTTGAAA 1 TTTGAAA 24905209 GCTGGAATCG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43 Consensus pattern (7 bp): TTTGAAA Left flanking sequence: Indices 24904695 -- 24905194 GATACACCAAATGAATGGACCGGGGGTCCTTTGACAGTGCTGCCTCCATTTCCCCAGCTCGTCCT TTGTGTTCGCGTGCTGTGCTGTCTGCGGCTGTTGTGTTTACCAGCGAGAGGAGAATTCAAATTAT TTGCGTTTATTTTCGAGAGCACATTTAATTAATAACCAGGCGGTGATTATCCCCTACACCGAACG CTCTGGCATATGACACTTGCGCGGTGGCTCGAATTACTGAAACCTGAATATAACTCGGGGCACGC GGCATAAAGAATCAATGTTTCTGTTTTGCCGAGCTGTGTGGAAAATTAAACATAGGGAATAAACA AAAACAGGAAATAAGAACACCGCTTGAAACCGGCGTTTACATACCCTTAAGATATTTGTCGTTCG ATTTTAGTAGTGATATCCAGCTCTAAACTTCAAATGAGCATTGTAAGCAATACTATAGTTTTGAG TTGATTAAGTTAGCTCAAAGAAGCTGGGGTCGGAAAAATCGAATT Right flanking sequence: Indices 24905209 -- 24905708 GCTGGAATCGTTTGCCCATTTTTTGCCCATGTTTGCCCACCAATTAGTTTTTTTTGCCCACGTCC AGTTTTTGAGATATGAATTTTCGAAAAAGTTCGAAAATTTTCGAAAATCAAAAATTTCGCTTTTT TCAAATTTTTTTTTTTTAAATCGCAATAACATCGTTTGCCCACGTTTGCCCACCCTTTAGAATTT TGAAAAAATTTATACTTTAGGAAATATAAGGCTTTTAAGTTTACCTCGGTCTAATCAGAGAGTAA ATCGTTTGCCCATCTCTTAAAACCAAATATTATCAACAAAAAACGTTTGCCCAACCATTATTATT AGTTTTTATCGTTTGCCCACCCTTTAAAAAACCTTTAACAAAAATTTTTTTTCGATTGCCCACAT TTAAAATACAACCAATTTCCTTAGCCCACCTCTTTAAAATAAAAATTTCCAATAAAAAACGTTTG CCCACCATTTAAAACTAAATAATTTCGATTGCCCACCTTTTAAAA Found at i:24905386 original size:10 final size:10 Alignment explanation
Indices: 24905371--24905391 Score: 42 Period size: 10 Copynumber: 2.1 Consensus size: 10 24905361 GCAATAACAT 24905371 CGTTTGCCCA 1 CGTTTGCCCA 24905381 CGTTTGCCCA 1 CGTTTGCCCA 24905391 C 1 C 24905392 CCTTTAGAAT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.10, C:0.43, G:0.19, T:0.29 Consensus pattern (10 bp): CGTTTGCCCA Left flanking sequence: Indices 24904871 -- 24905370 TTATCCCCTACACCGAACGCTCTGGCATATGACACTTGCGCGGTGGCTCGAATTACTGAAACCTG AATATAACTCGGGGCACGCGGCATAAAGAATCAATGTTTCTGTTTTGCCGAGCTGTGTGGAAAAT TAAACATAGGGAATAAACAAAAACAGGAAATAAGAACACCGCTTGAAACCGGCGTTTACATACCC TTAAGATATTTGTCGTTCGATTTTAGTAGTGATATCCAGCTCTAAACTTCAAATGAGCATTGTAA GCAATACTATAGTTTTGAGTTGATTAAGTTAGCTCAAAGAAGCTGGGGTCGGAAAAATCGAATTT TTGAAATTTGAAAGCTGGAATCGTTTGCCCATTTTTTGCCCATGTTTGCCCACCAATTAGTTTTT TTTGCCCACGTCCAGTTTTTGAGATATGAATTTTCGAAAAAGTTCGAAAATTTTCGAAAATCAAA AATTTCGCTTTTTTCAAATTTTTTTTTTTTAAATCGCAATAACAT Right flanking sequence: Indices 24905392 -- 24905891 CCTTTAGAATTTTGAAAAAATTTATACTTTAGGAAATATAAGGCTTTTAAGTTTACCTCGGTCTA ATCAGAGAGTAAATCGTTTGCCCATCTCTTAAAACCAAATATTATCAACAAAAAACGTTTGCCCA ACCATTATTATTAGTTTTTATCGTTTGCCCACCCTTTAAAAAACCTTTAACAAAAATTTTTTTTC GATTGCCCACATTTAAAATACAACCAATTTCCTTAGCCCACCTCTTTAAAATAAAAATTTCCAAT AAAAAACGTTTGCCCACCATTTAAAACTAAATAATTTCGATTGCCCACCTTTTAAAACTAAATAA TTTCGTTTGCCCATCCTTTAAAATTCATTTTTAACGTTTGCCCACCCTTTAAAATTAAATTATTT CGTTTGCCCACCCTTTAAAATTTGTTTTTTTCGTTTGCCCACTCTTAAAACTAAATAATTTCGAT TGCCCACCTTTTAAAACTAAATAATTTCGTTTGCCCATCCTTTAA Found at i:24906254 original size:10 final size:10 Alignment explanation
Indices: 24906239--24906259 Score: 42 Period size: 10 Copynumber: 2.1 Consensus size: 10 24906229 ATTCTAAAGG 24906239 GTGGGCAAAC 1 GTGGGCAAAC 24906249 GTGGGCAAAC 1 GTGGGCAAAC 24906259 G 1 G 24906260 ATGTTATTGC Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.29, C:0.19, G:0.43, T:0.10 Consensus pattern (10 bp): GTGGGCAAAC Left flanking sequence: Indices 24905739 -- 24906238 ATTCATTTTTAACGTTTGCCCACCCTTTAAAATTAAATTATTTCGTTTGCCCACCCTTTAAAATT TGTTTTTTTCGTTTGCCCACTCTTAAAACTAAATAATTTCGATTGCCCACCTTTTAAAACTAAAT AATTTCGTTTGCCCATCCTTTAAAATTCATTTTTAACGTTTGCCCACCCTTTAAAAATAAATTAT TACGTTTGCCCACCCTTTAAAATTTGTTTTTTTCAAACGTTTTTTATTGGAAATTTTTATTTTAA AGAGGTGGGCTAAGGAAATTGGTTGTATTTTAAATGTGGGCAATCGAAAAAAAATTTTTGTTAAA GGTTTTTTAAAGGGTGGGCAAACGATAAAAACTAATAATAATGGTTGGGCAAACGTTTTTTGTTG ATAATATTTGGTTTTAAGAGATGGGCAAACGATTTACTCTCTGATTAGACCGAGGTAAACTTAAA AGCCTTATATTTCCTAAAGTATAAATTTTTTCAAAATTCTAAAGG Right flanking sequence: Indices 24906260 -- 24906759 ATGTTATTGCGATTTAAAAAAAAAAAAATTTGAAAAAAGCGAAATTTTTGATTTTCGAAAATTTT CGAACTTTTTCGAAAATTCATATCTCAAAAACTGGACGTGGGCAAAAAAAACTAATTGGTGGGCA AACATGGGCAAAAAATGGGCAAACGATTCCAGCTTTCAAATTTCAAAAATTCGATTTTTCCGACC CCAGCTTCTTTGAGCTGATTAAGTTCTGGAAGTTGGTTTTTTAGAACTGTAACTAAAGAGCATTT ACCCTTTTCCGAAGGGCACGAAAAAGGAGTGATTCAGTCAAGCGGACATAATAGATCCGGCCAAA ATGAAATGACAACGGCTGAGGACGGCGGCCACTTCAGTGTGACAATCTAATTACACGGCTCGATG TGCTCGAAGCATAAATTCTAACCAACAACCATTAGAGCCAGCACCCTGGATCCAGCTATCACCGC CCCTTTGACCTTTTGATCCCCCATTTCGGTGGTGGTCTTTGATGT Found at i:24906435 original size:7 final size:7 Alignment explanation
Indices: 24906423--24906436 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 24906413 CGATTCCAGC 24906423 TTTCAAA 1 TTTCAAA 24906430 TTTCAAA 1 TTTCAAA 24906437 AATTCGATTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43 Consensus pattern (7 bp): TTTCAAA Left flanking sequence: Indices 24905923 -- 24906422 AAATAAATTATTACGTTTGCCCACCCTTTAAAATTTGTTTTTTTCAAACGTTTTTTATTGGAAAT TTTTATTTTAAAGAGGTGGGCTAAGGAAATTGGTTGTATTTTAAATGTGGGCAATCGAAAAAAAA TTTTTGTTAAAGGTTTTTTAAAGGGTGGGCAAACGATAAAAACTAATAATAATGGTTGGGCAAAC GTTTTTTGTTGATAATATTTGGTTTTAAGAGATGGGCAAACGATTTACTCTCTGATTAGACCGAG GTAAACTTAAAAGCCTTATATTTCCTAAAGTATAAATTTTTTCAAAATTCTAAAGGGTGGGCAAA CGTGGGCAAACGATGTTATTGCGATTTAAAAAAAAAAAAATTTGAAAAAAGCGAAATTTTTGATT TTCGAAAATTTTCGAACTTTTTCGAAAATTCATATCTCAAAAACTGGACGTGGGCAAAAAAAACT AATTGGTGGGCAAACATGGGCAAAAAATGGGCAAACGATTCCAGC Right flanking sequence: Indices 24906437 -- 24906936 AATTCGATTTTTCCGACCCCAGCTTCTTTGAGCTGATTAAGTTCTGGAAGTTGGTTTTTTAGAAC TGTAACTAAAGAGCATTTACCCTTTTCCGAAGGGCACGAAAAAGGAGTGATTCAGTCAAGCGGAC ATAATAGATCCGGCCAAAATGAAATGACAACGGCTGAGGACGGCGGCCACTTCAGTGTGACAATC TAATTACACGGCTCGATGTGCTCGAAGCATAAATTCTAACCAACAACCATTAGAGCCAGCACCCT GGATCCAGCTATCACCGCCCCTTTGACCTTTTGATCCCCCATTTCGGTGGTGGTCTTTGATGTCG CGCCGTGCATATTTGAATCCATCAATTGAGTGAATGATTGCTGAAAAGGGCTGTCTGAATCATTG CATTGCTACCGTTGCCCCCTCTAAGGTTTTCTATTGCTGTCCATTTGGTAATACTAAATGGATGG GGGGGACAGACCAGGCCAGGCCGTGCCGAAGGAGTAGCAAAATGG Found at i:24906982 original size:7 final size:7 Alignment explanation
Indices: 24906970--24906984 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 24906960 ACGGAACAAA 24906970 TTCATTG 1 TTCATTG 24906977 TTCATTG 1 TTCATTG 24906984 T 1 T 24906985 CGGGCTAAAC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.13, C:0.13, G:0.13, T:0.60 Consensus pattern (7 bp): TTCATTG Left flanking sequence: Indices 24906470 -- 24906969 TGATTAAGTTCTGGAAGTTGGTTTTTTAGAACTGTAACTAAAGAGCATTTACCCTTTTCCGAAGG GCACGAAAAAGGAGTGATTCAGTCAAGCGGACATAATAGATCCGGCCAAAATGAAATGACAACGG CTGAGGACGGCGGCCACTTCAGTGTGACAATCTAATTACACGGCTCGATGTGCTCGAAGCATAAA TTCTAACCAACAACCATTAGAGCCAGCACCCTGGATCCAGCTATCACCGCCCCTTTGACCTTTTG ATCCCCCATTTCGGTGGTGGTCTTTGATGTCGCGCCGTGCATATTTGAATCCATCAATTGAGTGA ATGATTGCTGAAAAGGGCTGTCTGAATCATTGCATTGCTACCGTTGCCCCCTCTAAGGTTTTCTA TTGCTGTCCATTTGGTAATACTAAATGGATGGGGGGGACAGACCAGGCCAGGCCGTGCCGAAGGA GTAGCAAAATGGGCAGAATCGTAACTGAAGCACAGACGGAACAAA Right flanking sequence: Indices 24906985 -- 24907484 CGGGCTAAACACGTATTGGCCATAAAGCGTACATGTCGCTGGGCCGGGCCAATCTGGCCAAAAGA ATCGGGTAACGAAATCAAAATAAAATTGTCGGTTAAATTCTTTTTCTTCTTTTCTAGCGGAGCGA ACATAATGGGGGGTTGCTTATGGGATGGCCTGGTTTTTAAATGGTTTTTTTAAAGTGCCTTTCTA GTCGTACCACCGAGTTGGAAGTTCTTCTTAAATATAAAATATTTAGAAAAAAAAGCGCGAACAAC GATATTATTGTTATATTATTACTTAAGTGAAACAATAAAAACATTGAAACATTAAAATCAAATAT ATTAGCATTTTTCATGAATCCCTTTGCATTTACCTACGTCAAATATCAAATCCAGATCGGTCATC TCAAAATAAAATGAAATTTCCTTAAATGTTATCCTGACATTGGCAATTGAATTCCCAGATTGCAG ATTGTAAACCCTTAAACCTTTTTTATTATGCACCCCACAGGCTAT Found at i:24907440 original size:7 final size:7 Alignment explanation
Indices: 24907430--24907443 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 24907420 ATTGAATTCC 24907430 CAGATTG 1 CAGATTG 24907437 CAGATTG 1 CAGATTG 24907444 TAAACCCTTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.14, G:0.29, T:0.29 Consensus pattern (7 bp): CAGATTG Left flanking sequence: Indices 24906930 -- 24907429 AAAATGGGCAGAATCGTAACTGAAGCACAGACGGAACAAATTCATTGTTCATTGTCGGGCTAAAC ACGTATTGGCCATAAAGCGTACATGTCGCTGGGCCGGGCCAATCTGGCCAAAAGAATCGGGTAAC GAAATCAAAATAAAATTGTCGGTTAAATTCTTTTTCTTCTTTTCTAGCGGAGCGAACATAATGGG GGGTTGCTTATGGGATGGCCTGGTTTTTAAATGGTTTTTTTAAAGTGCCTTTCTAGTCGTACCAC CGAGTTGGAAGTTCTTCTTAAATATAAAATATTTAGAAAAAAAAGCGCGAACAACGATATTATTG TTATATTATTACTTAAGTGAAACAATAAAAACATTGAAACATTAAAATCAAATATATTAGCATTT TTCATGAATCCCTTTGCATTTACCTACGTCAAATATCAAATCCAGATCGGTCATCTCAAAATAAA ATGAAATTTCCTTAAATGTTATCCTGACATTGGCAATTGAATTCC Right flanking sequence: Indices 24907444 -- 24907943 TAAACCCTTAAACCTTTTTTATTATGCACCCCACAGGCTATTTTTTACGTTTTTGTTCGTTGTAG GGCCATAAAAAGCTGGGAAACACGAATTCAATTGGCCGAATTACACGCTCCCCTAGGCGGATACT TGATCTCCTGGCTACAAAAGTATCTCAAGTTGATTATACGCCCGCACTGTATTGACTGCCCATTT CGGGGATACATTTGCGACAATAACGTATTAACGGCAGTGTGTGGAGCGGTCTCTGATGAAGGGAG GGGAGGGATCAATGGTCATGGGTAATAGCGTTTCCCGCTGGACCGGACCTGTTGTTCATCCAACT TAGACCTTCTATTTTGTACGTTTGCCTTGCCTCGCATTGCGGTGACTGCCAAGAGTTGGCAGACA GACAGCGTCAACAGTCGGCGGTCAGGTCAGGTGATGCGATGTGAGGGGGTGGGGGGATGGCTGCC AAAGGGGGTTACCCGGTGCTCCGTGCTCCGTGCTCCGTGCTCCAG Found at i:24907926 original size:7 final size:7 Alignment explanation
Indices: 24907914--24907941 Score: 56 Period size: 7 Copynumber: 4.0 Consensus size: 7 24907904 GGGTTACCCG 24907914 GTGCTCC 1 GTGCTCC 24907921 GTGCTCC 1 GTGCTCC 24907928 GTGCTCC 1 GTGCTCC 24907935 GTGCTCC 1 GTGCTCC 24907942 AGCAGGGGTG Statistics Matches: 21, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 21 1.00 ACGTcount: A:0.00, C:0.43, G:0.29, T:0.29 Consensus pattern (7 bp): GTGCTCC Left flanking sequence: Indices 24907414 -- 24907913 TTGGCAATTGAATTCCCAGATTGCAGATTGTAAACCCTTAAACCTTTTTTATTATGCACCCCACA GGCTATTTTTTACGTTTTTGTTCGTTGTAGGGCCATAAAAAGCTGGGAAACACGAATTCAATTGG CCGAATTACACGCTCCCCTAGGCGGATACTTGATCTCCTGGCTACAAAAGTATCTCAAGTTGATT ATACGCCCGCACTGTATTGACTGCCCATTTCGGGGATACATTTGCGACAATAACGTATTAACGGC AGTGTGTGGAGCGGTCTCTGATGAAGGGAGGGGAGGGATCAATGGTCATGGGTAATAGCGTTTCC CGCTGGACCGGACCTGTTGTTCATCCAACTTAGACCTTCTATTTTGTACGTTTGCCTTGCCTCGC ATTGCGGTGACTGCCAAGAGTTGGCAGACAGACAGCGTCAACAGTCGGCGGTCAGGTCAGGTGAT GCGATGTGAGGGGGTGGGGGGATGGCTGCCAAAGGGGGTTACCCG Right flanking sequence: Indices 24907942 -- 24908441 AGCAGGGGTGTTCCAGTTCGTTGACTTTCACGTGCGACGGGCGTTTGAAAGCCGGTAGGTTGTTT TTTATATTTATTGTGGCCCCTGCCATCGACTTTTTGCTTCTGCTCTTGTATTTTTTACGACAGTT TTACCTGTGCACGCGTTGGCTTTTGTAAATGACAATTTTACCGTTTTGTTGTGGATGTCTGTTCA CTGAACGCCTCACTTGTCCTTCCACCTCCACTGCCCGTCACCCCCTGGGCAAACCAGTCTAAAGT GCTTTCAACCATGGGACGTGGCGTGTTGACGATATAACTAGGCCGTAAAGTAGCTAGATTTTCCA TTTAGCAAGTGCGATTTATAATATCCCATTAAAATTATGGCATTTCAAACGGACGGTCAGTAATT ATGAAAAGTAGACCTTTACGAATGTTATATGATAAATCAGCATAATATATTTATTTGCTTGCTTT GATCTTTACCTAATTAATATGGCATGAACTTTTAAAGCAAATATT Found at