TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 97739986 P. falciparum 3D7 GENOMIC chr12 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 2271477 ACGTcount: A:0.41, C:0.10, G:0.10, T:0.40 Found at i: i:1234023 original size:9 final size:9 Alignment explanation
Indices: 1234009--1234027 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 1233999 TATATGTATA 1234009 TTTTATTTT 1 TTTTATTTT 1234018 TTTTATTTT 1 TTTTATTTT 1234027 T 1 T 1234028 ACATTTTGTA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89 Consensus pattern (9 bp): TTTTATTTT Left flanking sequence: Indices 1233509 -- 1234008 TAATTCCAACTTCAGATAGCTAATATTGAAAAATGAGGAAGTTTTTATTTATTATTTTTAAAGAT ATAAATAATATATTCACTTATGATATAATTTAAACAGAAGATAATATATATATATATATATATAT ATATATATATAATATATTTATTTATTTATATGTATATTTTTATAATATGAAAAAAAATAAAATTC GAGAAAAGTATATAAAAATTTTATTTGATAAAATTGATGACGAGAAGATACAGAAGGATTTAGAG TTTTCAAATTATAATTACAATTTTTTTATAAAACATGATATATATTATTTGAATAAGAAATTTTA CAAAGTGAAAAATATAAATGACATCACTATAAAGAAGACATTATTATTATATCTATATAAACATA ATTTTTATGTGCCTAAAATAATAAAGTAAATATGAAAAACATGGCAAAGTAAAATATTATATACA TATATAATATATATATATATATATATAATAATATATATATGTATA Right flanking sequence: Indices 1234028 -- 1234527 ACATTTTGTAGAAGATTAATTTTTAAGAAATTATTACTACAAAATGAAAATAATGAAAATAATGA AAATAATGAAAATAATGAAAATAATGAAAATAATGAAAATAATGAAAATAATGAAAATTTTAATT ATAACATATATCTTTTATTGTCGTATTTAAAAAATCCAAATATTATAGAAGCAACACAGGTATAT AATATTTAGACACCACATAAATAAATAAATATAAATATATATATATATATATATATATATATATA TATATGTGATCATTTTAATGTGCATATATATAATAAAAGGTTTTATATTTATTTATATCGTCCAT ATTATTCATATCATTTTATGTATTTAGAAAATCATCGATTTAGACGTATTTAGAACACGCATCAA TAAAGAAAATGAGAAAACCATTTATTTCTTTAATCTATTCTTAAATTATGCATGTAGTCATTTTC AATTTAAATATAAGCAAGGGCTGAACGAAGTTTTAGGTATATATA Found at i:1234084 original size:9 final size:9 Alignment explanation
Indices: 1234070--1234150 Score: 162 Period size: 9 Copynumber: 9.0 Consensus size: 9 1234060 ATTACTACAA 1234070 AATGAAAAT 1 AATGAAAAT 1234079 AATGAAAAT 1 AATGAAAAT 1234088 AATGAAAAT 1 AATGAAAAT 1234097 AATGAAAAT 1 AATGAAAAT 1234106 AATGAAAAT 1 AATGAAAAT 1234115 AATGAAAAT 1 AATGAAAAT 1234124 AATGAAAAT 1 AATGAAAAT 1234133 AATGAAAAT 1 AATGAAAAT 1234142 AATGAAAAT 1 AATGAAAAT 1234151 TTTAATTATA Statistics Matches: 72, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 72 1.00 ACGTcount: A:0.67, C:0.00, G:0.11, T:0.22 Consensus pattern (9 bp): AATGAAAAT Left flanking sequence: Indices 1233570 -- 1234069 AGATATAAATAATATATTCACTTATGATATAATTTAAACAGAAGATAATATATATATATATATAT ATATATATATATATAATATATTTATTTATTTATATGTATATTTTTATAATATGAAAAAAAATAAA ATTCGAGAAAAGTATATAAAAATTTTATTTGATAAAATTGATGACGAGAAGATACAGAAGGATTT AGAGTTTTCAAATTATAATTACAATTTTTTTATAAAACATGATATATATTATTTGAATAAGAAAT TTTACAAAGTGAAAAATATAAATGACATCACTATAAAGAAGACATTATTATTATATCTATATAAA CATAATTTTTATGTGCCTAAAATAATAAAGTAAATATGAAAAACATGGCAAAGTAAAATATTATA TACATATATAATATATATATATATATATATAATAATATATATATGTATATTTTATTTTTTTTATT TTTACATTTTGTAGAAGATTAATTTTTAAGAAATTATTACTACAA Right flanking sequence: Indices 1234151 -- 1234650 TTTAATTATAACATATATCTTTTATTGTCGTATTTAAAAAATCCAAATATTATAGAAGCAACACA GGTATATAATATTTAGACACCACATAAATAAATAAATATAAATATATATATATATATATATATAT ATATATATATATGTGATCATTTTAATGTGCATATATATAATAAAAGGTTTTATATTTATTTATAT CGTCCATATTATTCATATCATTTTATGTATTTAGAAAATCATCGATTTAGACGTATTTAGAACAC GCATCAATAAAGAAAATGAGAAAACCATTTATTTCTTTAATCTATTCTTAAATTATGCATGTAGT CATTTTCAATTTAAATATAAGCAAGGGCTGAACGAAGTTTTAGGTATATATAATGAATATACATT ATATGACTTATTAAATATGATACAACATATAACATATATATGTCATATGTTATTATATATATAAA TATATTTATATATATATATTTATTTATTTATTTATTTATTTACCT Found at i:1244701 original size:7 final size:7 Alignment explanation
Indices: 1244689--1244702 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 1244679 AAAATACAAT 1244689 TATTATA 1 TATTATA 1244696 TATTATA 1 TATTATA 1244703 CATACATTAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57 Consensus pattern (7 bp): TATTATA Left flanking sequence: Indices 1244189 -- 1244688 AGAAACTTTTATAATTATAACAGTATTCTTAAAAGAATGAAGAACGTTCCTATTATATGTGCATA TATACACATATAATCCTATATATATATATATAATAATTTTATCTGTGTGCCTTTCTTACAATAAA TTATATTGGATATATATATATATATATATATATATATATATTTAGATGTTCTATAGGAAACTATA ATTAATTAAATAAAGAAAGAAAGAAAAAAAAAAAAAAAAAAACTTGTTTTATATACACGTGATAA TATTATATACATTATGCATTTTTTATTATATTTCTTAAAAAAATTATAATATGAGTCTTTATTTC TATTTCTACATTTTACTTGTTACACACATATAAAATTAACCACAAAGAAAAAAAAAAAAAAAAAA AAAAAAATTTATATATATATATATATATATATATAATTTCATTGTAGATAGAAATTAAGAATATA TAAATATAATGACTACCTTTCTTGTCACATTTCGAAAAATACAAT Right flanking sequence: Indices 1244703 -- 1245202 CATACATTATATGTAAGTATGTTTTAGCAAATATAAGATTATTTATGTTTTAAAGTAAATACATT TTTTAAGTAATTTAAACAAATAGGTTTAATCGTATAGTTGTATATTTTGTAGGTCTATCTTTTCT TTTTTTCTTTCAAAAATAAGTATAGTCATTCAAATGAACATAAAAAAGGATATCACTTTAAAAAA TAATATCGTTCTTTTAAAAATATAAATAAATAAATGAATAAATAAATAAATGAATAAATAAATAA ATAAATGAATAAATAAATAAATAACAAATATACTTCACGTGTTACTTTTTTTTCTAACCTATATA TATATATATATATATATAAAGATATATGTATAATATATATATATATTATATCTTTTTTTTTTCTT TCTTCCTTTCATGAGTCTAGAGGAAAAATGAATAAATGAAATAATTGTATTCTACTAAATTGTTC CTATTGTAACATGTACTATTTATGTTATATATTTTTCTTATGTTG Found at i:1244840 original size:8 final size:8 Alignment explanation
Indices: 1244827--1244842 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 1244817 TAGGTCTATC 1244827 TTTTCTTT 1 TTTTCTTT 1244835 TTTTCTTT 1 TTTTCTTT 1244843 CAAAAATAAG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88 Consensus pattern (8 bp): TTTTCTTT Left flanking sequence: Indices 1244327 -- 1244826 GATATATATATATATATATATATATATATATATTTAGATGTTCTATAGGAAACTATAATTAATTA AATAAAGAAAGAAAGAAAAAAAAAAAAAAAAAAACTTGTTTTATATACACGTGATAATATTATAT ACATTATGCATTTTTTATTATATTTCTTAAAAAAATTATAATATGAGTCTTTATTTCTATTTCTA CATTTTACTTGTTACACACATATAAAATTAACCACAAAGAAAAAAAAAAAAAAAAAAAAAAAAAT TTATATATATATATATATATATATATAATTTCATTGTAGATAGAAATTAAGAATATATAAATATA ATGACTACCTTTCTTGTCACATTTCGAAAAATACAATTATTATATATTATACATACATTATATGT AAGTATGTTTTAGCAAATATAAGATTATTTATGTTTTAAAGTAAATACATTTTTTAAGTAATTTA AACAAATAGGTTTAATCGTATAGTTGTATATTTTGTAGGTCTATC Right flanking sequence: Indices 1244843 -- 1245342 CAAAAATAAGTATAGTCATTCAAATGAACATAAAAAAGGATATCACTTTAAAAAATAATATCGTT CTTTTAAAAATATAAATAAATAAATGAATAAATAAATAAATGAATAAATAAATAAATAAATGAAT AAATAAATAAATAACAAATATACTTCACGTGTTACTTTTTTTTCTAACCTATATATATATATATA TATATATAAAGATATATGTATAATATATATATATATTATATCTTTTTTTTTTCTTTCTTCCTTTC ATGAGTCTAGAGGAAAAATGAATAAATGAAATAATTGTATTCTACTAAATTGTTCCTATTGTAAC ATGTACTATTTATGTTATATATTTTTCTTATGTTGAACAAATATTCCTTTTGAATTATTTAAAAA TGGTGTTTTTACGAAAATAATAAAATGAATAAAATATAATGCCTTGTACGGATTAGTCTCTACTA CATATTGTTATAAATATGAGAATGTGCAATATTTTTTTTTTTTTT Found at i:1251131 original size:7 final size:7 Alignment explanation
Indices: 1251119--1251132 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 1251109 TATTTCACTT 1251119 TTATATA 1 TTATATA 1251126 TTATATA 1 TTATATA 1251133 AAAATTTTCA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57 Consensus pattern (7 bp): TTATATA Left flanking sequence: Indices 1250619 -- 1251118 TCAACCCAGCATATTTAGAAAGTTCCATTTATTCTAAAATATTAAAAATGATTTGTTTTTTCAAA TTATTTCCCACAATAAATTAAAAATTACAAAAATTAAATATATGTAACGCAATGGATATTCAAGT TGTAAGCATACGAACAGAAAAATTAAATGATATAATATGATATAAAATAAAATAAAATAATTGTC TAGGGAATATAAAAAAACAAAATAAATAAATTAAAAGTATACTATCATTTTATTTATGAATATTT TAAAATAAAAAAAAAATACATGTGTAGAAGCATTCACAACATATATAAAAATATATATGTATATT TAATATAACCTTATATTAACAAACATAACATTTTTCTTATAACACAAATTTTATATATTATTCTG AAAAAAAAAAAAAAAAAAAAAGCTAGATTATCATCAATAACCTGACCTGTTAAGAATTTATATAT ATATATATATATATATATATATATAGCTACATAAATATTTCACTT Right flanking sequence: Indices 1251133 -- 1251632 AAAATTTTCATTTAATATATAGCATACAAACCTTATGTTGTTTTTATTTTATTTATATTACCCTT GCATGTAGGTGCAATTTTTTTTTTTTTTTTTTTTTTCCTACTTAATTTATATATCTATGTAATAT TAGGTTCATATAAATTTCAAAATATTTCTGAACATGTGCATAAATTTATGCACACATAAAAAAAA AAAAAAAAAAAAAAAAGAAATGAAATTGAAATGAAAAATGAAATGAAAAATGAAATGAAAAATGA AAATGAAAATGAAATGAAAAATGAAATATTCTCTTAATAATATATTATATATAAATGAAAGCGGA TATTATGTGAAAGGATATATAGAAATACTCCTTTCTACAAATAAAAGTGTATATAAAATATTATG TTTATAAGTAAAATATAATTGTCTATAAAATTTTTTATCTGTATATAAAGACATATTATATAAAC ATTATATATATTTCTTTTTTTACCCAGTTTTCATCTTGTATAATA Found at i:1252277 original size:8 final size:8 Alignment explanation
Indices: 1252264--1252279 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 1252254 ATATACAAAG 1252264 AATACATC 1 AATACATC 1252272 AATACATC 1 AATACATC 1252280 CACATATATA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25 Consensus pattern (8 bp): AATACATC Left flanking sequence: Indices 1251764 -- 1252263 TATTCAAAAAAAAATTAATATGAAGAAATATATACATAATAAATATATATTTCTTTTTAAATTGA AAAAATAAAAAAAATAAAAAAATAATACTAATTAAAAAAAAAATGAATATAATTCATATATACAC TAAAATCCATTACAATGTTTCACAAATAAAATTATTATTAGTATGACAACACATATCTGCAGCAA TATTCATAGCTTTATAAGCTATATCTTTAGCACTTAAATTTTCGACATCATACAATGCTCTTGCA GCTGCCATAGCATATGGACCTCCTGATCCTGTTCCTAAAACATTTCCTGATGGTTCTAAAACATC ACCATTACCGGTTACTTCTAACAAAATATCCTTATCAGCCACTATTAAAACGGCCTCTAAATGTC TTAAATATCTATCAGTTCTCCAAAGTTTGGCTAACTCAACACAACTTCTCAAAAGTTGATCTATA AAGTTACAAAAAGGAAAGGTACATAAAATAATGACATATACAAAG Right flanking sequence: Indices 1252280 -- 1252779 CACATATATATATATATATATATATAATCACGTGTGTATTTATTTTTATATAAATTTATTTACTT GGATATTCATCAATCTTTGTCTCAAATTTATCTAGCAAGGTAAAACAATCCGCTGTAGCTCCTGC GAAACCCATTAATATATTGTCCTTTAAACGTCTTATCTTTTTTGCATTTCCCTTAACTATCTATA TTGTTATTAACAGGAAAAAAAATACATATATATATATATATATATTATTAAGATATGCAAAAAAT ACATATACAATTTTGTAGTAACAAAAATAATTGCTCAAACCATCGTTCCTTGAGAAACCATTCCA TCACCGATCAAACACTAAAAAATATAAAAATTAATAAAATAATTATTTCTATATATTTCAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTTATCATTTAATCAATTAATAATGTAATCATT TTATAATTTTTCTTTTGATTGAATATATTTAAAATATGTTTTTCC Found at i:1256231 original size:7 final size:7 Alignment explanation
Indices: 1256219--1256232 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 1256209 AAAATATATA 1256219 ATTTTTT 1 ATTTTTT 1256226 ATTTTTT 1 ATTTTTT 1256233 TTGTATAATA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86 Consensus pattern (7 bp): ATTTTTT Left flanking sequence: Indices 1255719 -- 1256218 AGAAAAAGAAATAAAAATAAGGCAAATAAATAAATATATATATATATTTATATATATTTATATTA TATAATTTTTTCTTTTTTTTTTAAACACAATTTTCAGTTAATAAAAAGATATATTGCCTTTTCTA ATTATAATTTAATTTAACAAAAAAAAAAAAAAAAAATTTCTATATACCATATGAGCATATAAAAA ATTACATTCGATATAATATTTTCTCTTTTAAAATATTACCTTCTGTTTATTTTAATATTTTTAAA TAATTTTTATTTAAAGAAAATATATTATAAAGAGGAAATTTTTTTTTTCTTTTCTTAAAAATAAA ATATTTATTATAAATATAATATATATATATATAATTATACATATATATTATATTTATTATTATAT ATAGAGTGAATCTGATTATATTATATATATATATATATATTAACATATATATTGTATATATCCAT ATATATATATATATATATATGTATGTAATAAAAAAAAAATATATA Right flanking sequence: Indices 1256233 -- 1256732 TTGTATAATATAATAAAAAATAAATTTAAGAAGAAAATTTTAATCTACATTAAAATTTTAAAATA CACATAAAAATATAATATTTTTATTTATTTAATTTTTTTTTTAATTGATGTTTTATAATTTTCAA ATATTCAACATTATAAAACTTCACGTTGAAGGGTGTAGTGTATAATAATATATACTATTATTATA ATATATGAATTAAAAAAAAAAAAAAGAACCTTTATTATCTTTTGTTTTTTTTAATTTTTTAATAA TACAATATATTATTTTATTTATAAATAATTTTTGTTGTTATACAAAAAAAAAAAAAAAAAAAAAA TTAAAATGATAATCGTCATATTATAATTAATAGAATAAATATATTTTATGAGTTATAGTCTTTTT TTTTTCTTTTTTTTTTTTTTTTTTTGGAGGGGTGGTTTAATTAAAAAAAAAAAAGAATGAATAGT ACTAGACTACGTCACATTGAAAATGCATTAAATAATTTTAATTTT Found at i:1256485 original size:8 final size:8 Alignment explanation
Indices: 1256474--1256490 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 1256464 ATCTTTTGTT 1256474 TTTTTTAA 1 TTTTTTAA 1256482 TTTTTTAA 1 TTTTTTAA 1256490 T 1 T 1256491 AATACAATAT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76 Consensus pattern (8 bp): TTTTTTAA Left flanking sequence: Indices 1255974 -- 1256473 TTAAATAATTTTTATTTAAAGAAAATATATTATAAAGAGGAAATTTTTTTTTTCTTTTCTTAAAA ATAAAATATTTATTATAAATATAATATATATATATATAATTATACATATATATTATATTTATTAT TATATATAGAGTGAATCTGATTATATTATATATATATATATATATTAACATATATATTGTATATA TCCATATATATATATATATATATATGTATGTAATAAAAAAAAAATATATAATTTTTTATTTTTTT TGTATAATATAATAAAAAATAAATTTAAGAAGAAAATTTTAATCTACATTAAAATTTTAAAATAC ACATAAAAATATAATATTTTTATTTATTTAATTTTTTTTTTAATTGATGTTTTATAATTTTCAAA TATTCAACATTATAAAACTTCACGTTGAAGGGTGTAGTGTATAATAATATATACTATTATTATAA TATATGAATTAAAAAAAAAAAAAAGAACCTTTATTATCTTTTGTT Right flanking sequence: Indices 1256491 -- 1256990 AATACAATATATTATTTTATTTATAAATAATTTTTGTTGTTATACAAAAAAAAAAAAAAAAAAAA AATTAAAATGATAATCGTCATATTATAATTAATAGAATAAATATATTTTATGAGTTATAGTCTTT TTTTTTTCTTTTTTTTTTTTTTTTTTTGGAGGGGTGGTTTAATTAAAAAAAAAAAAGAATGAATA GTACTAGACTACGTCACATTGAAAATGCATTAAATAATTTTAATTTTATGTCTCCTTTGGACATT TATATGCGTTTATATTTTAAAAGTAATAATATAAAGAACAAAGATAAACCGTATATTTCAGAACA TGTCTATAATATTATAAAAAACAAAACACTCTTATCATATTTATCTTCACCAAGTTCATTGTATA CAAATGTAATTAAGACGTATTTTTCTTCTGACAAGTAACTAAAAAATAATATATATAAAAGAAAA ATGAAATAAAATTAATTCGTAGGACCATGTTAGGAATTAAATATA Found at i:1262609 original size:7 final size:7 Alignment explanation
Indices: 1262599--1262612 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 1262589 TAAATAAATA 1262599 TATATAT 1 TATATAT 1262606 TATATAT 1 TATATAT 1262613 ATTTTTATTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57 Consensus pattern (7 bp): TATATAT Left flanking sequence: Indices 1262099 -- 1262598 GAGGGATACCTAAATATATAAATATATATATAAATATATATCTTTTTTTATAATAAATGAAATAA TAGCAATATAATAAATTTAACAATATTAAGTATATTATTTAAAAAAAAAAAAAAAAATATATATA TATATATATATATATGTATATTTTAGAAGGAAAAATGTTATTATATATATGTACAGTATATTATT GTTTTATAATTGCATAAAAAAGAAAATATAATTCTTGAAATAATTACTTTTATTTTTTTTTTAAT TCATCCATATTGAAATTATATATATATATTTATTTATTTATTTATTTATTTATTTATATTTTTTT TTCAACAGTGTTATATATGTTATATATATATATATATATATATATTATCTTTTTTTTTTTTTTTA ACATGTGGAATAAATGAACATTGAACAATGAACAAATATGATTAACAAAAGGTTATTATAAAAAC TTTAAAAATATTTATCTTTCAATAAATAAAAATAATAAATAAATA Right flanking sequence: Indices 1262613 -- 1263112 ATTTTTATTTCGGTATTGTATAAATTTTCTTTTTTTTTTTTCATACCTTTTAAAAAAGGAAGATA CAAAAGAAAATATATAGAGGTATAATATAATATATATATATTATATATATATTATATACTTTTAT TTGGTATTATTTCAATATAAAAAAAAAAAGAGCCAAATATAAAAATATTGATTATATTGTATATA TATATATATATATATATATATACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATTATTCAT GTTATTTTAAGGTTCCTACTTTTTCTTATACCCCTATATATAAATATTTTTGTAAGGGAAAAAGA ATTTAAAAAAATATGTTTTACAAAATAATTTTTGTGAACACAAAAAATAAATAAATAAATAAATA AATAAATAATGTTTAATGATGTTTTTTAAATATATATTAAAAAGAAAAAAAAAAAAAAAAAAAAA AAAATCTTAATTGTGTCATAATTAAAAAAAATTAGCATTCTTTTT Found at i:1262609 original size:9 final size:9 Alignment explanation
Indices: 1262597--1262615 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 1262587 AATAAATAAA 1262597 TATATATAT 1 TATATATAT 1262606 TATATATAT 1 TATATATAT 1262615 T 1 T 1262616 TTTATTTCGG Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58 Consensus pattern (9 bp): TATATATAT Left flanking sequence: Indices 1262097 -- 1262596 ACGAGGGATACCTAAATATATAAATATATATATAAATATATATCTTTTTTTATAATAAATGAAAT AATAGCAATATAATAAATTTAACAATATTAAGTATATTATTTAAAAAAAAAAAAAAAAATATATA TATATATATATATATATGTATATTTTAGAAGGAAAAATGTTATTATATATATGTACAGTATATTA TTGTTTTATAATTGCATAAAAAAGAAAATATAATTCTTGAAATAATTACTTTTATTTTTTTTTTA ATTCATCCATATTGAAATTATATATATATATTTATTTATTTATTTATTTATTTATTTATATTTTT TTTTCAACAGTGTTATATATGTTATATATATATATATATATATATATTATCTTTTTTTTTTTTTT TAACATGTGGAATAAATGAACATTGAACAATGAACAAATATGATTAACAAAAGGTTATTATAAAA ACTTTAAAAATATTTATCTTTCAATAAATAAAAATAATAAATAAA Right flanking sequence: Indices 1262616 -- 1263115 TTTATTTCGGTATTGTATAAATTTTCTTTTTTTTTTTTCATACCTTTTAAAAAAGGAAGATACAA AAGAAAATATATAGAGGTATAATATAATATATATATATTATATATATATTATATACTTTTATTTG GTATTATTTCAATATAAAAAAAAAAAGAGCCAAATATAAAAATATTGATTATATTGTATATATAT ATATATATATATATATATACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTATTATTCATGTT ATTTTAAGGTTCCTACTTTTTCTTATACCCCTATATATAAATATTTTTGTAAGGGAAAAAGAATT TAAAAAAATATGTTTTACAAAATAATTTTTGTGAACACAAAAAATAAATAAATAAATAAATAAAT AAATAATGTTTAATGATGTTTTTTAAATATATATTAAAAAGAAAAAAAAAAAAAAAAAAAAAAAA ATCTTAATTGTGTCATAATTAAAAAAAATTAGCATTCTTTTTTAC Found at i:1272627 original size:8 final size:8 Alignment explanation
Indices: 1272616--1272633 Score: 36 Period size: 8 Copynumber: 2.2 Consensus size: 8 1272606 GTGTATACTA 1272616 TTTTACAC 1 TTTTACAC 1272624 TTTTACAC 1 TTTTACAC 1272632 TT 1 TT 1272634 CCCTTTTTAG Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 10 1.00 ACGTcount: A:0.22, C:0.22, G:0.00, T:0.56 Consensus pattern (8 bp): TTTTACAC Left flanking sequence: Indices 1272116 -- 1272615 TATTTATATTTATGTTTATATTTTATTATTTTTTATTATTTTTGTAAAGATTAACGAAAGAACTT CAGATGATAGATTAAATTTTATAAACAATTTTAACACGGAAAAACAAATAACAATAGAAAAAGAA AATATCGTTGAAAAAAATGTTACGAAAGATTATAATTTAATTAAACTTGAAATAGAATTTGTGTC AACGATGAATTTATTAACATTTGAAGAATTAAAAGAACTGTTTTTATTTTTTTTTCCTGAACAAG TAATGTCAATTGATGAAAATATAATTAAAGAAAATATTATTGAAAAATTTTTACTAAACATAAAT TCCTTATCAGAAAATTATTCTAGAATAATCGAAAAGGGTATATTAAAAGCATGAAATTTATAGAG ACCCTTATAAATATATAATATATATATATATATATATATATATATATATATATATATTTATTTAT ATTTATGTTTATATTTATGCTTTTTTTTTATATATGTGTATACTA Right flanking sequence: Indices 1272634 -- 1273133 CCCTTTTTAGAGTATCATGTGCCTGATTATAGTAAAGATTTAAATCTTATCACATTAAGTGAATA TTTAAACAATTTAAGAAATGTAAAATTAGAAAAAAAAACTAATTTTTATTGTGAAGAAAGTGTGG ATAGTGAGCTAGCCATTAATGAAACGATAACTAGCCAAAATAAAGAACGTGAAGAAAAAAAAATG TGTGCAAATCAGGAAAAAAATATAGTTGAAACAAGCAGTGAAAATATTTTGTCTAAGGATATTAC AGAAGAACAGAAGGTATATATAAGTGAAGAAAATAGGAATGATAAAATAAATGAAGAAGATCAAG TACACATAAAAAGTGTAGAAAAAAAAGATAATGCTGCTGTTGTTGAGGCAAAAAATATGAACAAT CTTGTAATTGAACAAAATATTGAGAAAGTCATTGTGGAAGAGAAAAAAAAACGGAAAAGAAAAGA AAAAATAAATATCGATGAAAATAAGCATATATTGATAAATATAAA Found at i:1273252 original size:7 final size:7 Alignment explanation
Indices: 1273240--1273253 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 1273230 AAATTTTTTC 1273240 ATAATAA 1 ATAATAA 1273247 ATAATAA 1 ATAATAA 1273254 TATTAGTAAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29 Consensus pattern (7 bp): ATAATAA Left flanking sequence: Indices 1272740 -- 1273239 ATTTTTATTGTGAAGAAAGTGTGGATAGTGAGCTAGCCATTAATGAAACGATAACTAGCCAAAAT AAAGAACGTGAAGAAAAAAAAATGTGTGCAAATCAGGAAAAAAATATAGTTGAAACAAGCAGTGA AAATATTTTGTCTAAGGATATTACAGAAGAACAGAAGGTATATATAAGTGAAGAAAATAGGAATG ATAAAATAAATGAAGAAGATCAAGTACACATAAAAAGTGTAGAAAAAAAAGATAATGCTGCTGTT GTTGAGGCAAAAAATATGAACAATCTTGTAATTGAACAAAATATTGAGAAAGTCATTGTGGAAGA GAAAAAAAAACGGAAAAGAAAAGAAAAAATAAATATCGATGAAAATAAGCATATATTGATAAATA TAAATGATTATAACATTCTTAGGCATGATGATCAATTATTTATTAGTTTAACAACAAATAAAAAC AAGCCTCAAAAAGAAAAAACAATTATAGGCAAGGAAAATTTTTTC Right flanking sequence: Indices 1273254 -- 1273753 TATTAGTAATGATGAAATGAATAAACAGGATAACAATAATGAGAACATAAATACTACAAGTACTA GTAATATTAATGATAATAATAGTACTAAGAGTAATAATAATAAAAGTAATTTTCATAATATTTAT AATTCTGCAAGTAGTAATAATTATTATGAACATGTTAAAAATGTGAACGGGTCTTATAATAGTAA TATTCATACAAACTCAAATAATAATAACCTTTTACAAAAAATAAACGCTGAACAATATATGATAA TTGATAATAATAATAATAATAATTATTATAATGATGATGAAAATAAAAAGAAACATCCTATGAAT ATTTTATTAAACTTGAACAATAAGGAGAAAAAAAAACGATCACGAAACGAAGGAAGTAAAGAGAC AAAAATGAATGTAAGCAAAAAAGTAAGAAATATGAAAAACAAAAATAATTTGGATATACATTTTT TATATGAAAAAACGAATGAAAATAATGTGGACAATCAAAATAAAA Found at i:1273520 original size:7 final size:7 Alignment explanation
Indices: 1273508--1273521 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 1273498 GAACAATATA 1273508 TGATAAT 1 TGATAAT 1273515 TGATAAT 1 TGATAAT 1273522 AATAATAATA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43 Consensus pattern (7 bp): TGATAAT Left flanking sequence: Indices 1273008 -- 1273507 AAAAAATATGAACAATCTTGTAATTGAACAAAATATTGAGAAAGTCATTGTGGAAGAGAAAAAAA AACGGAAAAGAAAAGAAAAAATAAATATCGATGAAAATAAGCATATATTGATAAATATAAATGAT TATAACATTCTTAGGCATGATGATCAATTATTTATTAGTTTAACAACAAATAAAAACAAGCCTCA AAAAGAAAAAACAATTATAGGCAAGGAAAATTTTTTCATAATAAATAATAATATTAGTAATGATG AAATGAATAAACAGGATAACAATAATGAGAACATAAATACTACAAGTACTAGTAATATTAATGAT AATAATAGTACTAAGAGTAATAATAATAAAAGTAATTTTCATAATATTTATAATTCTGCAAGTAG TAATAATTATTATGAACATGTTAAAAATGTGAACGGGTCTTATAATAGTAATATTCATACAAACT CAAATAATAATAACCTTTTACAAAAAATAAACGCTGAACAATATA Right flanking sequence: Indices 1273522 -- 1274021 AATAATAATAATAATTATTATAATGATGATGAAAATAAAAAGAAACATCCTATGAATATTTTATT AAACTTGAACAATAAGGAGAAAAAAAAACGATCACGAAACGAAGGAAGTAAAGAGACAAAAATGA ATGTAAGCAAAAAAGTAAGAAATATGAAAAACAAAAATAATTTGGATATACATTTTTTATATGAA AAAACGAATGAAAATAATGTGGACAATCAAAATAAAAATGAACATTTGTATGAACAAAAATTAAT TAATTATGAATCCATAATAGGGATAGATGATATCACAGAAAATAATGATTTAAAAGAACAGCATA ACTCAATATCTTCAATTCCAAATTATAATATTATTAGTACAACCTCCAATACATGTGATATGCAA GAAGAGTTTTATAACAATATGAATATAAATATAAATAGGTGTTTATATAAACAAACCATCACGAA CAAGAACAACAAGGACGACAATAATAATAATAATAATGATAATAA Found at i:1275600 original size:8 final size:8 Alignment explanation
Indices: 1275589--1275604 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 1275579 TTTTTTAAAT 1275589 TATATTTA 1 TATATTTA 1275597 TATATTTA 1 TATATTTA 1275605 AAAAAAATTG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62 Consensus pattern (8 bp): TATATTTA Left flanking sequence: Indices 1275089 -- 1275588 TTTTTTTTTTATTTTTTTTTTATTTTTTTTTCATTTTTTTTATTTTTTTTATTTTTCATTTATTT TTTTTTTTAAATTACACATTGAAAAAAAATATATTTTTTAAAGATTAGTAATTCAAAAAAAAATA TATGTAAAATGTATATAAAATATATACCTTCATATTTCTCTTATATGCCATATATATTTAATAGC GTGAAAATTTTTAAATATTGTACTATTTATTTTTAGCATTTTCCTTAGAATTTATATATATATTA TATATATATATATATATACATATAATATTATATGATAAATATATTATTTATTTATATAAATATAT ATTAAGAAATAATACTAAAAATTAAAATGAAATTATTTATAATTTTTACATATATATATATAAAA TAATAAATTTATATATTATATATAATATATAACATTGTTTTGCATGTAAATATTCAATTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTGTTTTTTTAAAT Right flanking sequence: Indices 1275605 -- 1276104 AAAAAAATTGTTAGTACAATTCAGATGATTTCTTCTTATATTAATTTATGAAATAATTATTACAA TTGAGGAAAGGGATAAAGGAAAGAAATAAATATTTTAAAAAGATACTAAAATATAATTATATATA TATATATATAAACATATATATAATAATAATAATATAATATATATATATATATATATAAAATAGTT CAATTTTTCATTCTTTTAAAAATTTTGTATTATATATATATTTAATATAAATACATGTATATATA AAATACAAAAAAGTCAAAAGTATATATATTTATTATATGAACAAAATAAATAAGGAAAAAAAAAG ATTTATCTATAAAGTTATACATGTTTTTTACGAAATATATGTGTAAATCATTTTGAAAATCAACA TATAATGAAAGTAAAACAAAAAAGAATTACATATAGAATAAGTCACAAATTATATTTTAATATTT ATTGTTAAATCGTGTAATTTAAAAATATATAAATTATTTTGTTTT Found at i:1280054 original size:8 final size:9 Alignment explanation
Indices: 1280035--1280052 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 1280025 CATGTAATCA 1280035 TATATTTTT 1 TATATTTTT 1280044 TATATTTTT 1 TATATTTTT 1280053 ATGTGGAAAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78 Consensus pattern (9 bp): TATATTTTT Left flanking sequence: Indices 1279535 -- 1280034 TATTTTTTTTAGACCTGTTCTCCCCATCGTTTTATATAAAGCCCTTGAATAGTTTTTCCATAGCA TTTTTTTTATGTAATCTTATGAAATTTTAAAATTTTTCCCTTATTTTTTTTTATCATAATTATAT AATATAATATATATTTTCTTTTCTTCAATAAAAATTTAAAACGTTACAAAATATTAATATTTATA TAATCAACATATGCATAATATATTGATTAAATGCAACAAATTGGTTATTTAAAAGTAAGCATGTA ATGATATCTTAATAAATAAAACTTTATAGAAACATGTATTATTATGTTTATTTTTTTTTTTTTTA AATAAAATAAAATTTAAAGTTTATATCTTTATATATATATATATTATATCATATGCATATTAAAT CCATTATATGTTATAAAAATAAGAATTTTAAGACAAATTTTATTTTATAAAAAATATATATTCAT TACTTTTATATATATATATATAATAATATTATATACATGTAATCA Right flanking sequence: Indices 1280053 -- 1280552 ATGTGGAAAATTTTGAAAACAGCTATGGAAAAAAAAAAAAAAAAAAAAAAAAAGCTAGTTATTTA TAAGGTATAATTTTATAGATCCAAATAATAAAAAGAAAAAAAAAAAAAAAAAAAAGTATTCAATA AATGAAGGAAAATTAAAAATTTTAAGAATATAAAAAAATTTTAATTTTTATTTAGAATAATGAGA ATGGTTTTTTAGTTTATAAAAAAAATGTGTAGTTATATAAGAATATAAAAATATATTTTTTTACA TATTGTGTGCAAATAAAAAATAAAAAATATATATATATGTGTATAAATTTTATCATACATTATTT AAACCTTAAGAACAATGAAATGAATATTATATAGGATCTATAATATTAAAATATAAAATGAACAC AATAAAATTTTACATTGTGGAAACCTTTTTGAAAAATAGGAACTTTATTATATATATATATGTTA TATATTATTAGAAAAATATTGTTCTAACAATTTTTCCCTTATACT Found at i:1280335 original size:7 final size:7 Alignment explanation
Indices: 1280323--1280341 Score: 38 Period size: 7 Copynumber: 2.7 Consensus size: 7 1280313 TATTGTGTGC 1280323 AAATAAA 1 AAATAAA 1280330 AAATAAA 1 AAATAAA 1280337 AAATA 1 AAATA 1280342 TATATATATG Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16 Consensus pattern (7 bp): AAATAAA Left flanking sequence: Indices 1279823 -- 1280322 GAAACATGTATTATTATGTTTATTTTTTTTTTTTTTAAATAAAATAAAATTTAAAGTTTATATCT TTATATATATATATATTATATCATATGCATATTAAATCCATTATATGTTATAAAAATAAGAATTT TAAGACAAATTTTATTTTATAAAAAATATATATTCATTACTTTTATATATATATATATAATAATA TTATATACATGTAATCATATATTTTTTATATTTTTATGTGGAAAATTTTGAAAACAGCTATGGAA AAAAAAAAAAAAAAAAAAAAAAAGCTAGTTATTTATAAGGTATAATTTTATAGATCCAAATAATA AAAAGAAAAAAAAAAAAAAAAAAAAGTATTCAATAAATGAAGGAAAATTAAAAATTTTAAGAATA TAAAAAAATTTTAATTTTTATTTAGAATAATGAGAATGGTTTTTTAGTTTATAAAAAAAATGTGT AGTTATATAAGAATATAAAAATATATTTTTTTACATATTGTGTGC Right flanking sequence: Indices 1280342 -- 1280841 TATATATATGTGTATAAATTTTATCATACATTATTTAAACCTTAAGAACAATGAAATGAATATTA TATAGGATCTATAATATTAAAATATAAAATGAACACAATAAAATTTTACATTGTGGAAACCTTTT TGAAAAATAGGAACTTTATTATATATATATATGTTATATATTATTAGAAAAATATTGTTCTAACA ATTTTTCCCTTATACTTTTTTTTAAGCTAGTTGATGATTTTAAAATATAATTTTTTTAATAATAT CCTTATTACATCCATTACACATTTATATTCATAAGCACAATTTAATAAATTAATTTTTAAAATTT TTGGGAAAACTTAAGTATATATATATATATATATATATATATATTGTTCATGTTCTACATGCAAT ATCCATATTAAGAGAATTAATATGAAAAAAAAAAAAAAAAGTTCTATATAATAAAATGTTAATTT TTTTTTTTTTGGAAAAAATAAAATCATTATATTTTTATTAATTTT Found at i:1281384 original size:8 final size:8 Alignment explanation
Indices: 1281371--1281386 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 1281361 GTACCTTTTT 1281371 AAAAGTTA 1 AAAAGTTA 1281379 AAAAGTTA 1 AAAAGTTA 1281387 TATATTCTTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.62, C:0.00, G:0.12, T:0.25 Consensus pattern (8 bp): AAAAGTTA Left flanking sequence: Indices 1280871 -- 1281370 AAAATATGAAAACCTATATTATAATATTTGATAAAAAAATAATAAAATTGAAGTTCAAAATAAAT TTATAAGTAAATTCAATAAAATAAACAAAAAATAAGTTCATTTTTAGTAATCTATAATTAATTTC ACGGTATAAGATATATTTCAATGTTTTAAAAAATTGTATCAATTTTGTTATATCTATATAAATTT TTTAAGTTCAATTTTACACTTGTTCATTTGTATTTATTTTTATTTCATTTTATTTACTCTATATG AATGTAAAACGAAATATCAAACTTATTATTAGTTTCATTATAATTAACTTTATATGCATGTTAAA AATGTTATAAGTGAACCATGAATGATTATTGTGTACCAGATTATTGGATAAAGAGCAAGAATAAG ATTACTATAAATTTTTGATAATTACACTTTTTAATATTTAAAAATGTAAAATAAGGATATCCTAA TTTATCTCAATTGTTATAAACATCAGGTTTTATTTGTACCTTTTT Right flanking sequence: Indices 1281387 -- 1281886 TATATTCTTTATTATTTAAATATAAAATTATAATGAAATAGAATGAAATTATCTTTAAATTACAT TATAAAATCATAAAAAACAAAAAGTTCTTTTTTATATATTTTTAATATATCTTTTTATTTTTTAA TTTTATTAATGATCTAGGTAAATAAAATAAAGCATCATACATGAACCATCAAAGCATTTCCATGG TGGTACTATACAAATAATAATTCTACATAAGAAAAAAACATTTTTAAATATATATACTATACGGT TATTCATTACTTGACTTATTTTGTAACATCAAATAAGTTATCATGAAAATTCTATATTATTCTTC CTAAGAAAATTCATAAAATTATGTATAAATATATATATTCATAATGTTTAAAAAAAAATATTTTG TGTGTTCATATGTTGTATACATATTTTAGATTAAATTCTATATAATATGTAATTGGGTATTACAA AAAGGTAATTTACACACTGCATATAGGAATAACAAAAAATTGAAA Found at i:1282693 original size:10 final size:10 Alignment explanation
Indices: 1282678--1282699 Score: 44 Period size: 10 Copynumber: 2.2 Consensus size: 10 1282668 TTATGGAATT 1282678 TTTAAATTAA 1 TTTAAATTAA 1282688 TTTAAATTAA 1 TTTAAATTAA 1282698 TT 1 TT 1282700 GTTTATATTT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 12 1.00 ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55 Consensus pattern (10 bp): TTTAAATTAA Left flanking sequence: Indices 1282178 -- 1282677 TTTTAAGCAATAATAATTTTTCTTATATGACCTTAATACATATAATATTAATTAAATCGTATACT TTAACTATAAAAAGACAAATATTATATTACTGAATTATATTATTTATATAGAAAACTAACTGTAT TAATATTACTAATACATATATTGGTATATATTATATAAACGTTTTCAGTATTAGAAACATATACA TATTAACTCTATAAATAATGAAGTGTAGGTAACATATAAACAATATTCTAATTATATGAATTTAT TTCGATTCAAAATATACTTTTTCATATAATATTTCATTATTTATATATGTTTCATAAGAAAAAAG AAATAAATCTTAATAAATAATTTTTTTTGATAGATTTTCTAGGATAATATGAAATATTTCGTAAA AAAAATAATAATAAAAATGATATTTAAATATTTATATTAACTACAATATTAATATTTTATTATTT ATAAATTATTTATTTAAAAATATATAAATATTAATTTATGGAATT Right flanking sequence: Indices 1282700 -- 1283199 GTTTATATTTAATTATATATTTAATAAAATATATTTTAAAATAATACACACAAAATGATTCTTAA TTAAATATAAAATATTTATTTTATTTATAATGAAATAAATAATTTAATTTAAAATAAAATAAAAT AAAAATAATAATATTTATTATTATATAATATATTTAATTAAATTAAATTTATTATTTAATTAATT TAAAATAAAATAAAAATAATAATATTTATTATTATATAATATATTTAATTAAATTAAATTTATTA TTTAATTAATTAATTTAAAATAAAATAAAAATAATAATATTTATTATTATATAATATATTTAATT AAATTAAATTTATTATTTAATTAATTTAAAATAAATAATAATTAAATTAATATATATTATAATTA ATTAAAAATAAAATAATATTCAATTATAAATTTATTAATAATTTTAAATAAATAATTAAAATAAT AATAAATTAAATAATTTAATTAATATAAATAAACATTATAAATTA Found at i:1285483 original size:7 final size:7 Alignment explanation
Indices: 1285473--1285488 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 1285463 GAAATAAATG 1285473 TACATAA 1 TACATAA 1285480 TACATAA 1 TACATAA 1285487 TA 1 TA 1285489 AAAGTTATAT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31 Consensus pattern (7 bp): TACATAA Left flanking sequence: Indices 1284973 -- 1285472 ATGATTTAATTTGATATATTATATAATTATATATATATATTTTTATTTATTTTATAAATTAATAA ATATATATTATATTAATATGTGATTATTATATTTATATATTTGTATAGTCTTATACATATATAAT ATATATTTGGGGGTATATATTTGGAATGTTTTTTATTATTATAATTTATTATTGTCTTTATCCTT TTTTAATGAAATAAATAAAATATCCCTTGAACGAATATATTTTTTTCTATTCTTATTTTTAAGTT AATTATTTTTTTTTAATTTGTTGTTACATATTTTGATATACTTATTCATTATAAATATATTATAA GCATATTAATTTATATATGTGTGGATAACAGAAATGTCATTTTATTTAATTTAAAATCCAAGTTA AATATATATAATTGTATAAATATTATGATTATGTGTTATGAATTCGTTTAGAATAAAAAAATTCA GTATATTGTAAAGAAAATGTAATATTTTTTAATATGAAATAAATG Right flanking sequence: Indices 1285489 -- 1285988 AAAGTTATATTATTATATATATTTCCTATTTTTACGAATATCATATCAACATTGTTTCATGTCTG ATGTGTAAATTTAGATTACTTTTTATTGTACCAAAATATTAAACCCTAAAATATTATCCAAAAGA AAATTTTTATTTTAGGAAATATAAAAGTTCATTTTTTTTACTTTTTTTTTTATTTAACATAGTAT AATTCACTTATAAAATTTTACTATAATTATATAATTTTCATTAAAATTTAAAAAGTACCTTATTT TCAATATTTTATAAAGAATAATGACTTTATATCTATATTTTTTAAGTGTTTAATTTTGTTTGAAC AAAGATGAAAAAATAAATTATAATGTGTAGCTTATGAAAAGTTTAAGATACAATTTTTTACTATA TATACATACAAGATAAATTAACATGTAAAGAGAAACATCATAAGAAAATTTTAGAAGAAAGAAAC ATGTAATATTTTAAATAGATGGAAAATTTTTGTTCACGTAAGGGA Found at i:1286068 original size:8 final size:8 Alignment explanation
Indices: 1286057--1286072 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 1286047 TTTAATGCAT 1286057 TATTAGTA 1 TATTAGTA 1286065 TATTAGTA 1 TATTAGTA 1286073 AAAAAGATTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50 Consensus pattern (8 bp): TATTAGTA Left flanking sequence: Indices 1285557 -- 1286056 TGTAAATTTAGATTACTTTTTATTGTACCAAAATATTAAACCCTAAAATATTATCCAAAAGAAAA TTTTTATTTTAGGAAATATAAAAGTTCATTTTTTTTACTTTTTTTTTTATTTAACATAGTATAAT TCACTTATAAAATTTTACTATAATTATATAATTTTCATTAAAATTTAAAAAGTACCTTATTTTCA ATATTTTATAAAGAATAATGACTTTATATCTATATTTTTTAAGTGTTTAATTTTGTTTGAACAAA GATGAAAAAATAAATTATAATGTGTAGCTTATGAAAAGTTTAAGATACAATTTTTTACTATATAT ACATACAAGATAAATTAACATGTAAAGAGAAACATCATAAGAAAATTTTAGAAGAAAGAAACATG TAATATTTTAAATAGATGGAAAATTTTTGTTCACGTAAGGGAAGACAACGGAAGGAAATTATTAC TTTCTATATACCATATAATAATTTTCATTTATAAATTTAATGCAT Right flanking sequence: Indices 1286073 -- 1286572 AAAAAGATTTAAATATATAACATACCCTATTAAAATATTAAATATAGGAACTTAAATACGATTAT GTTGAATAAAACAAAATATTAATTTTCCAACACATACAATCTATAATTAAATTCTTTGAACCTCA TAATGTTGAACTATTTTTTCCATACCAGCAGAAAAAGAACAAAATAAAATATACAATATTCTTAA GACAAATTTTTATTCATTTATTCTTGTGAAAGTGTGATAACAGTTTGATGTAATATTTTCTTTTA TTTATTATATTATAAGAATTTTTTTTCATTATAATCCACATGAACTATTGTATATTAATAAATAA AGAAAAAAAATAAGAAAAAAAAAAAAATTCATATTAAATAACATTTATATTATAAAAATATTACA TATATATAATATATAAGAAAATTACTATTGAAGTAATCTTGGATTTTTAGAACATGATAAAAAAT GATCTCTCCATTTATCAATCTCAAAAGATTCAATACAAAGTGAAC Found at i:1286474 original size:7 final size:7 Alignment explanation
Indices: 1286464--1286478 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 1286454 AATATTACAT 1286464 ATATATA 1 ATATATA 1286471 ATATATA 1 ATATATA 1286478 A 1 A 1286479 GAAAATTACT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40 Consensus pattern (7 bp): ATATATA Left flanking sequence: Indices 1285964 -- 1286463 GGAAAATTTTTGTTCACGTAAGGGAAGACAACGGAAGGAAATTATTACTTTCTATATACCATATA ATAATTTTCATTTATAAATTTAATGCATTATTAGTATATTAGTAAAAAAGATTTAAATATATAAC ATACCCTATTAAAATATTAAATATAGGAACTTAAATACGATTATGTTGAATAAAACAAAATATTA ATTTTCCAACACATACAATCTATAATTAAATTCTTTGAACCTCATAATGTTGAACTATTTTTTCC ATACCAGCAGAAAAAGAACAAAATAAAATATACAATATTCTTAAGACAAATTTTTATTCATTTAT TCTTGTGAAAGTGTGATAACAGTTTGATGTAATATTTTCTTTTATTTATTATATTATAAGAATTT TTTTTCATTATAATCCACATGAACTATTGTATATTAATAAATAAAGAAAAAAAATAAGAAAAAAA AAAAAATTCATATTAAATAACATTTATATTATAAAAATATTACAT Right flanking sequence: Indices 1286479 -- 1286978 GAAAATTACTATTGAAGTAATCTTGGATTTTTAGAACATGATAAAAAATGATCTCTCCATTTATC AATCTCAAAAGATTCAATACAAAGTGAACAGTAATAACAGGAGAGATATTCCGTTTTTTTTCCTT TGCATTCACTCATTACATGTGTATCTAATAAATTTTGTTTTACAATTTTATTACAATATTCACAT GGAGTATACATATAACTATGTGAACATTCTGATATAAAGTGATCATGAATAACAACTAATTCAAC AATTAGAAAGCAATTTGGACAAGCACAAAGCATTGGGCAATTTTTAATCCAATGTTTTTCTAAAC CTATTTCAGTAAATGTTTCATCTGTCCTAAAACAATATTTACATGTAAAAGGAGGAACGTATGGT TCTTCATTTTCATCTAACTTTTTATAATCTTCCATTGATTCACTTTTATTTACAGTATTATCAAT TTGTATAGTACTCTTTTCTTCATTTTTAATATTAATATTTTTATT Found at i:1288264 original size:9 final size:9 Alignment explanation
Indices: 1288252--1288271 Score: 40 Period size: 9 Copynumber: 2.2 Consensus size: 9 1288242 TCCACAAATT 1288252 TTTTTTATA 1 TTTTTTATA 1288261 TTTTTTATA 1 TTTTTTATA 1288270 TT 1 TT 1288272 CTCATTAGAC Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80 Consensus pattern (9 bp): TTTTTTATA Left flanking sequence: Indices 1287752 -- 1288251 GCATTGATAATATGATGGAAAAGACATTTTTAAAAGAGGTAAACTTATTATGCAACATCATCATT ATAGTTTTTATTGAAATATCTACAATATCAAGATTAGAATCATCTAAACGTTTTAAAAGTGAAGA AATTATGAAATTAAGATATTTTACGTTTTTTTCGTTTGTACTATTTTCAACAAATGTATTGTTGT CCATTTTTAAAAAATAATGTTGAAACATAATTAACATTTTTTCTAATATAACAACACTTTTGACA AATATATAATAAGAATTATCTGATATTCCACTTTTGATTATTAAACATAAGGATTCTATATTATT GTACCAAACATTTTTTTTTTTTGTTTTTTCATGAAATTCAAATGGCTTATAAGCCATGTCATAAC CCATTTCTCGTTGTTTATCATTATCGCTACCAATGAATATAAGAATATTGTTTAAGTCAATATCA TTATCATCATTTGTATCAATATCTTGATCAACAATTCCACAAATT Right flanking sequence: Indices 1288272 -- 1288771 CTCATTAGACATTATTTTATTTATTTCTTTTTCATGCAATTCAAGTTCTTTATAATATAAAACTA ACCATTCATAATACCATTTTTTTGAACTATTATGTATAACTTTTAATTCTTCTATGTTTTGTATT ATAATTTTAATTTTAATTTCTTTTTCTTTTAATTTTTTAGCTTTTCCATAATTTTCTTCTTTAAC ATATTTGCTTTTTTTTCCCTTTAAAAAAGTTATAACATTTTTTAAAAATATGAATATATTTACAA TTTTCTTTAGTTCATTTGCTTTATTGAATTCTTCCTTTACTACACATTCACCTTTTAATTTTTCA AAGCATTTTATTTTGTTTTCTAATTTTTCATATAACGTATTAATTTTGTTTTTATCACGTTTATA AGAATAGGATCTTCTATAATTTCCCCAGTTATGTGAATATACAGGATTCATTTCTGAGATATTAT TATCACTAATATTGGAATCATATTTATTTAGTTCTTTTTTTTTTA Found at i:1290560 original size:8 final size:8 Alignment explanation
Indices: 1290549--1290564 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 1290539 TACATAAAAA 1290549 AATAATTT 1 AATAATTT 1290557 AATAATTT 1 AATAATTT 1290565 TCATTCAAAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (8 bp): AATAATTT Left flanking sequence: Indices 1290049 -- 1290548 AAAAAAAAAAAAAAAAAAAAAGTCATTTTTGAAATATAATATATAAAATATAATTTTATTCTTTT CAATATTAATAATTTTTAAGAACAAGTTTATATTATTATTATAAATAAAATTACGTTGTAATAGT ATTATAATACTTGTGTAAGACAATATTAAAACAAAAAAAAATTATATTTTCAAAAGGAAAAATGA ATTATTTTTTTATATATTAATACTTAAAATTTTTTTTTTTTTCTTATATATAATGTAAAATAATC ATATAAAAAAAAAAAGAAAAAAAATTTCTATGAATTAATATATATAGATAAATATTTTTATTAAA TCTTTACAATATCAAATAAAAGTTAATATATATATATATACATATATATGTTTATTTATATATAA AGTTAATTAAAAATTCCATAAACGAAAAAAATTCATGTGTAAGGAGAATTATATGTAAGCACAAA AAAAAATTTAGAAACATAATATAAATGAAATATTTTACATAAAAA Right flanking sequence: Indices 1290565 -- 1291064 TCATTCAAAATAATAATACATATTAAAAAACCACAAATAAAAAAAAAATTATATAACAAAAAATA GAATTTTATATATTAACAGTATATATATATATATATATTAATATTTAACCAAATAATAAATCAGT TATAATACCAACAAAAGAAAAAGTTGTTAAACATCCTAATAGAACATAAGTTGTTTCTACATGAT ATTTTTGAAGAATATATGGATATACATGAATTCTAATTTTCATTATTTCTATTTTGTCTGACATG TTTTTATTTAAATCTTTATCATTACTATCAATTATTTCGTTTAATTCCTAAAAAAAAAAATATAT ATATATATATATCAATATAAAATGAAACAAAATAAAATAATGATATATGTTAATTATATTAAATT TGTAAATATTTTTTTTCATACAAATATTACATAAATAATAAAAGTACAGTGCATGTTAACGTAAT TGATAAATATATATATATATATATGTAAAATTAAAAAAAAATATA Found at i:1296497 original size:8 final size:8 Alignment explanation
Indices: 1296484--1296499 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 1296474 AAACAGCTAC 1296484 CGAACACA 1 CGAACACA 1296492 CGAACACA 1 CGAACACA 1296500 TTCCCAAATA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.50, C:0.38, G:0.12, T:0.00 Consensus pattern (8 bp): CGAACACA Left flanking sequence: Indices 1295984 -- 1296483 TAAATGGTTGAAGAAACAGATAAATACAAAAATGAACTCATAAATATCATAAAAACAACATATTG ATAATTTATTGTTTCTTCTAATCCTTTTGAGGATAAATGAATACATATAATTGCATTAATAAGAT AGCCAATAGTAAAACCTGATATCATTATTCTTTCATACCCTCCTGTACTTGTATAATAATATCCA TTAAACATAGCATCTAAAAGATTTAAAGAACACTTTGTTATCTTTATTTGTGGATATATTTGAAA TAATATAGTATATCCATATAATTTAATAATAAATATATCAATTATTTTCGATATGACTAGTATTC CACAAATATTGTTGCATATATTTCCTAAATGGTATAAAAAAGAAACAAATTTATATTTCTCATTA GACATAAAATATTTTATAACTGCACTATATTCAATTCTTTGTTCAAAGTTTTTGTTTTTTGGTAT CATAGTCATAGCCCTTAAAATCATTAAGCTGCAAAAAACAGCTAC Right flanking sequence: Indices 1296500 -- 1296999 TTCCCAAATATTACTGGGATCCATCCTACTTCATCTATTAAACTTGGAATATCAAATAGACCTAC AGAAACGAACAAAAGGAAATAACAAATTAATATAAAAATAAATAAATAAATATAAATAAATATAT ATATATTTTGTACATGTTGTTTCTTTAATAATTTTAAACATTAGATTCAATTGTTAAAAAGGAAA CTTAAAGTAATAAACATTTATATAACAATATATTCATGTGACTAATTTGTAATTTCTATTCAAAC ATTTTATTTTATTTTATTTTATTTTTTTACAAATTAAATTTATTAAATGGTAAATGTATTATTTT TATCTTTTACTTATTATATAAATAAATATACATTTATATATTTATAATCTATATAATTATACCTG AACCAATACTTTGATTAAATAAATATATAAAGGAAGCAAAAGGTCCAATAGTTTTTGTGTATTTC CATGTTATGGTACGAAATCTTTTTCTACTTCTTACAAATTTTTGT Found at i:1299080 original size:9 final size:9 Alignment explanation
Indices: 1299068--1299087 Score: 40 Period size: 9 Copynumber: 2.2 Consensus size: 9 1299058 TTTAATGTAT 1299068 TATATATTA 1 TATATATTA 1299077 TATATATTA 1 TATATATTA 1299086 TA 1 TA 1299088 AAATATTCAT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55 Consensus pattern (9 bp): TATATATTA Left flanking sequence: Indices 1298568 -- 1299067 AGCAATATAATATAATATAATATAATAAATAATAATTCGTTTTGTTATTTTAAAATTTTATATAA TATTAGAAATTTTTATTGTTTTTTTTTTTAAATATATAAAAAACATTTTTTATAATATAAATATA TATATATATATATATATATATATATATAATATTTAAGGAAATATTAAAAGTGGGTTCATATATAC ATCATATTGTGTAATTAAAGTAATATTTTTATATTCAGTCAAAAAATAAATATATGTTATAATAA AATACTTAAGTGAAAAAATAGGTAAATATAATACATATAATATATTTTTATTTATTTTATATTAT TATAATAAGGAAATTATATTTTATATGGTTTCAATTTTTTTTTTCTTTTTTTTTTTAAATAAGAG GAATATTTTATTTATATATTTTATTTTAATAAACATATTATATTCTAATATAAAAAATAATTTTT TTTATATAAATTCCCTGGAGGTAGTAGGAAGATTATTTAATGTAT Right flanking sequence: Indices 1299088 -- 1299587 AAATATTCATATTCAAATTAAATATATAGTACCATTATATTTAAAAAAAATAAAGTAAATAAATA TATTATATATATATATATATATATATATATATATATATATTATATATTTATTTAGTTTATTTTTT TTATATCATTAAAAAAGAATAAGAAATATGAATAAAATTATACATAATATTTTTTGTAGACTTTT TCGATTTTTTATTTTTTCAATATATTTATAATATAAAAATAAACATTTGTGATTTTATTTTTTTT TAATTACTTTATAATATTTTACTTTTTTGGTTATATATAACGATTATTTTAAAATGTTTTTAATT ATATGATAAAAAAAAAAAAAAAAAAAAAAAATTTATATATCTATATCTTTATATATATGTTCCCT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTATAAATTTATGAATGGTTCATAATATTATTT TTTTATTTCCTATAATTTAATTTCATTTTACTTAATTTTTTATAA Found at