TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 102851237 P. falciparum 3D7 GENOMIC chr13 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 2895605 ACGTcount: A:0.41, C:0.09, G:0.10, T:0.41 Warning! 400 characters in sequence are not A, C, G, or T Found at i: i:1011648 original size:8 final size:7 Alignment explanation
Indices: 1011631--1011647 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 1011621 AGAAGATGTA 1011631 TTTCTTT 1 TTTCTTT 1011638 TTTCTTT 1 TTTCTTT 1011645 TTT 1 TTT 1011648 TATTCTACAT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88 Consensus pattern (7 bp): TTTCTTT Left flanking sequence: Indices 1011131 -- 1011630 ATTTTTTTTTATTATAATTACAATTATATATTTTTTTATTATAATTACAATTATATTTTTTTTTA TTTTTAACATTACATATATTATTATTCACATGTGTTATACATTGATAAATATAAAAAATTTTCCT GAAGACATTTTTTGTAATAAATACATTAATACTATCATTTTGAAGGATAACAAAAAGATTATTTT GTTCTTTACGTTTTACATAAATAAATGTAACATATATGTTTCTTACAAATTCTTCATTTATATTA TTATTTGAAAAAAAAATATCCGTGTGTAAAGAAATATTCATTTTTTTAAAGATAGTATTATCTAT ATCCTTTTTTTTGTTAATACAAGATGTATAAGAAAAAGATCCATTAGAAATTATTTTTACAATTT TTTTTTTATGATACATTTCTTTTTGTTTATACCAACATATAGGTTTATATATATTGAAAGAACAT TTGTACATGTCTACATTTAAAAAAAAAATTGTATGAGAAGATGTA Right flanking sequence: Indices 1011648 -- 1012147 TATTCTACATATATATTGGTTACATAACATTTCTCTAGATAACTTATAAAACAATAATACATGTA TATCTTCATAATATGTTATAAAATAATTTATTTCTTTGAACTTATTTATTAAATATAATAAATCT TTTAATGTGATATTTATATTTAAATTTTTTATTTTTATATTTATAAAAAATGGATTCGAACAATC CTTATTTGTTTTCAATGTATCCAATTTATTATATTCTTTATGTACATTATTTAATAACGGATATT CATTTTTATTACATGTTTTTACGTCGGACGTGTGGTATAATAATTTGATATCATAAATAACATTT GTAAATGGATTATTTTTACATATATTTGTATATATATTTGTATTTATTTTTTCATTTGTATTTAT TTTTTCATTTGTATTTATTTTTTCATTTGTATTTATTTTTTCATTTGTATTTATTTTTTCATTTG TATTTATTTTTTCATTTGTATTTATTTTTTCATTTGTATTTATAT Found at i:1012932 original size:7 final size:7 Alignment explanation
Indices: 1012922--1012936 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 1012912 ATAAAAGATA 1012922 AATGTTT 1 AATGTTT 1012929 AATGTTT 1 AATGTTT 1012936 A 1 A 1012937 CATTTATTTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.33, C:0.00, G:0.13, T:0.53 Consensus pattern (7 bp): AATGTTT Left flanking sequence: Indices 1012422 -- 1012921 TAAATTTCCATTATGTATATTTAAATTTTCATTATGTATATTATTCACATTTTCATATAAATGTA GTAACACACTTAAAATATCGGAATATTCTTTATTTTGAAAATAATGTCGATTTTTATTTGTTTCT TTTTTATTAATATCATTATCAAAAATAGGATCCTTATAAAATGACATATTATTTTGTTCACATAT ACGATTTACATTACTTACGTTTTTTTTTTTATTCTCTACGATGTTATTAACATCAAAAATATAAC CATTGATACACATATACTTTTTATTATGAACAAAATAATGAACCATATTTTTCCATGTATTAAAT ATAAAATTAACATAGAAATATCCTTTATACAGAATACATAATTCATTTTTGTATTGTCTTTTATT ATTAGTATTATATACATCTTTTTTCTTTTTTTTTTTTACTATTTGTTTATAAAATAATTTGGTAG GTTGTATGATATGTTCATAAAACATAAAATTAAATATAAAAGATA Right flanking sequence: Indices 1012937 -- 1013436 CATTTATTTTATAAATATTATTATATTTTATATAACTACTATAATTATTAAAATCGGTATCTTTT ATATTTTTCATTTTTTTTTTTTTATATAAATATATTAGCATATCAAAATAATTGTTATCATGATA ACTTTCTTTATCCCTTATTATTAATAAATTTTTATTTTTATATATATTATTATTTTTATTTATAT ATATATTATTATTTTTATTTTTATATATATTATTATTTTTTTTTTTATTATTATTTTTTTTTTTT TTTTTCATATCTAATGATGATAAGATATTCCTATTTAACCTTTTTATATACCTTTCAAACTGTAC CAATTTGTTTATTTCATATATAAATAGATTTTTATCACATACAAAATAAAAAATATATAAACTAT ATAATTCAAAAATGTCCGAATTTATATAAAGACTTTTAATTTTTATGTTAATATCATTGCATATT TCCTTACCAATAAAATTATCTTTAGTTCTCTTATAAAATATTTCA Found at i:1014403 original size:7 final size:7 Alignment explanation
Indices: 1014391--1014404 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 1014381 ATTTCTACTT 1014391 TTAAAAA 1 TTAAAAA 1014398 TTAAAAA 1 TTAAAAA 1014405 CTTATTATTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29 Consensus pattern (7 bp): TTAAAAA Left flanking sequence: Indices 1013891 -- 1014390 TATCTTGGTTACCCTCAAAATTTTTATTATCATTACAATGTAATATTGATTTAAGTATTTCTTTT TTATTATTATTATTATTATTTTTTTTATTATTATTATTATTATTTTTTTTTTTATTATTATTATT ATTTTTTTTATTATTTTTTTGATTTTCCTGTTTATGTACAAAATTATAATATAACTTATCATAGA AATATTCCACATTATTATTTAACAAATTGTCCACACATATTTGTTGTAATAAATTAAAATCTTCT GGACACATATGTAATACTCCACATAAAAATATTTTCAGAAAAAAAAGAGGATTCTTCTTTTTATA TAAAACATTTCTATAATATTGAATAAGAATATGGAAATTATCCATAACCTTATTTTTTGTTGGAT ATGAAAAACAATAATTATTTAAAAAATATACTAATATCTTATCATATAATTTTATTTTATTATCT TCTTTTTTAAATATATATTTATTTTTTATATGTATATTTCTACTT Right flanking sequence: Indices 1014405 -- 1014904 CTTATTATTATTATTATATATAGATGGAATATATAAAAGTACATTATTAAAATCAAATTTATATT TATTCAAACTTATAATCATATTTTTCATATTTTTCTTTTCTATTCTATACATATTATTATATGAA GAAAAACCCTTCGATTCATATCCTTTAGTATGTTCCACATGTTCCTTTTTAATCATATTTTTAAA AATAATAAAATTACGTAAACGGAACATATTACACACTTCATCATGCACAAAATTATAATACTCAT GATTATTACATAAGTGTTTATTACTACCATATGTATTTATCATCATATTGTTATAATTTAATATT TCTTTTATATCTTTTATATCTTTTATATCTTTCATATCTTTCATTTCTTTTATATCTTTCATATC TTTCATTTCTTTTATATCTTTCATATCTTTCATTTCTTTTATATCTTTCATTTCTTTTATATCTT TCATATCTTTCATTTCTTTTATATCTTTCATTTCTTTTATATATT Found at i:1014499 original size:9 final size:9 Alignment explanation
Indices: 1014485--1014504 Score: 40 Period size: 9 Copynumber: 2.2 Consensus size: 9 1014475 AAACTTATAA 1014485 TCATATTTT 1 TCATATTTT 1014494 TCATATTTT 1 TCATATTTT 1014503 TC 1 TC 1014505 TTTTCTATTC Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 11 1.00 ACGTcount: A:0.20, C:0.15, G:0.00, T:0.65 Consensus pattern (9 bp): TCATATTTT Left flanking sequence: Indices 1013985 -- 1014484 ATTATTATTATTATTTTTTTTTTTATTATTATTATTATTTTTTTTATTATTTTTTTGATTTTCCT GTTTATGTACAAAATTATAATATAACTTATCATAGAAATATTCCACATTATTATTTAACAAATTG TCCACACATATTTGTTGTAATAAATTAAAATCTTCTGGACACATATGTAATACTCCACATAAAAA TATTTTCAGAAAAAAAAGAGGATTCTTCTTTTTATATAAAACATTTCTATAATATTGAATAAGAA TATGGAAATTATCCATAACCTTATTTTTTGTTGGATATGAAAAACAATAATTATTTAAAAAATAT ACTAATATCTTATCATATAATTTTATTTTATTATCTTCTTTTTTAAATATATATTTATTTTTTAT ATGTATATTTCTACTTTTAAAAATTAAAAACTTATTATTATTATTATATATAGATGGAATATATA AAAGTACATTATTAAAATCAAATTTATATTTATTCAAACTTATAA Right flanking sequence: Indices 1014505 -- 1015004 TTTTCTATTCTATACATATTATTATATGAAGAAAAACCCTTCGATTCATATCCTTTAGTATGTTC CACATGTTCCTTTTTAATCATATTTTTAAAAATAATAAAATTACGTAAACGGAACATATTACACA CTTCATCATGCACAAAATTATAATACTCATGATTATTACATAAGTGTTTATTACTACCATATGTA TTTATCATCATATTGTTATAATTTAATATTTCTTTTATATCTTTTATATCTTTTATATCTTTCAT ATCTTTCATTTCTTTTATATCTTTCATATCTTTCATTTCTTTTATATCTTTCATATCTTTCATTT CTTTTATATCTTTCATTTCTTTTATATCTTTCATATCTTTCATTTCTTTTATATCTTTCATTTCT TTTATATATTTCATTTCTTTTATATATTTCATTTCTTTTATATATTTCATTTCTTTTATATATTT CATTTCTTTTATATATTTCATTTCTTTTATATATTTCATTTCTTT Found at i:1016760 original size:8 final size:9 Alignment explanation
Indices: 1016739--1016762 Score: 48 Period size: 9 Copynumber: 2.7 Consensus size: 9 1016729 GGGAACTTTT 1016739 TTTTTCATC 1 TTTTTCATC 1016748 TTTTTCATC 1 TTTTTCATC 1016757 TTTTTC 1 TTTTTC 1016763 TTTATACTCA Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 15 1.00 ACGTcount: A:0.08, C:0.21, G:0.00, T:0.71 Consensus pattern (9 bp): TTTTTCATC Left flanking sequence: Indices 1016239 -- 1016738 ATTTGATATATAATAAAATTAAGAAAAATTATTTTAACATTATTAATTATATTTATATCAATTTT TTTGTCACTAATTTTTAAATACATATCACAAGGAAGGTTCTTATATGTATTCCCATCATTTGAAA GTTCTTTACTTCTTTTTCTACATGATGTATAATTTTTTTTTTTCTTTTCAAGAATACAAATATCT CTCAAAATATTAGAACATGATAACAACTGAACTTTTATATTACTAAAATAAAAATAATGATTATT CAAACAATATGTTTTATAAGACAAATGTTTATAATTTAAATTCATTTTTAAAAAATAATATAAGC TAAATGTAATACACAAAGGTGAGATTATATTATTATTTATCACATTTTTATTATTTCCTTTCTTT GTACATACAACATTACAATCATTATTAAGAACATTATATTTGTTTGAAATACAAAAAAATTGTAA TTTAACATTTTTGCTAATTATTTTAATAATAAAAAGGGAACTTTT Right flanking sequence: Indices 1016763 -- 1017262 TTTATACTCAGTATTTTTATATTCATATAATTTTTTTTTATTCACTCGACATTTTTCTCGTAATA CATTTCTCATACAACAATTAAAAATATGTGTACTTTTTTTTTTTCTTAAATAATATATAGAATAT AAATAATAAATAAAATTTACATGTGTAGGTAACATATAGCCAAGAAAATTATGAGCATATATCGT TACAATAATGTTTTTATCATTATTAATTTTTTTATTAAATGAATCTTCTCTTTCTATTTTTAATA TAATATTTATTTTTTCACATAATGAGTATTCATATAAGACATCCTCTTCATAATAAACACTAGTG CATAATATATTATTTAAATGTACGTTTCTTTCTCTTTCTATATTTTCTTTAGGAATATCCTTATA AGTATTCTCGACATTGTATTGATTAACACTTCTTTGATCTCTTATTCCTATGTATATATCATTCT TCTTATTTTCATTTTTTATCTCTTCAATTTCTATTTTTATAATTT Found at i:1016901 original size:7 final size:7 Alignment explanation
Indices: 1016891--1016905 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 1016881 TATATAGAAT 1016891 ATAAATA 1 ATAAATA 1016898 ATAAATA 1 ATAAATA 1016905 A 1 A 1016906 AATTTACATG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27 Consensus pattern (7 bp): ATAAATA Left flanking sequence: Indices 1016391 -- 1016890 TGATGTATAATTTTTTTTTTTCTTTTCAAGAATACAAATATCTCTCAAAATATTAGAACATGATA ACAACTGAACTTTTATATTACTAAAATAAAAATAATGATTATTCAAACAATATGTTTTATAAGAC AAATGTTTATAATTTAAATTCATTTTTAAAAAATAATATAAGCTAAATGTAATACACAAAGGTGA GATTATATTATTATTTATCACATTTTTATTATTTCCTTTCTTTGTACATACAACATTACAATCAT TATTAAGAACATTATATTTGTTTGAAATACAAAAAAATTGTAATTTAACATTTTTGCTAATTATT TTAATAATAAAAAGGGAACTTTTTTTTTCATCTTTTTCATCTTTTTCTTTATACTCAGTATTTTT ATATTCATATAATTTTTTTTTATTCACTCGACATTTTTCTCGTAATACATTTCTCATACAACAAT TAAAAATATGTGTACTTTTTTTTTTTCTTAAATAATATATAGAAT Right flanking sequence: Indices 1016906 -- 1017405 AATTTACATGTGTAGGTAACATATAGCCAAGAAAATTATGAGCATATATCGTTACAATAATGTTT TTATCATTATTAATTTTTTTATTAAATGAATCTTCTCTTTCTATTTTTAATATAATATTTATTTT TTCACATAATGAGTATTCATATAAGACATCCTCTTCATAATAAACACTAGTGCATAATATATTAT TTAAATGTACGTTTCTTTCTCTTTCTATATTTTCTTTAGGAATATCCTTATAAGTATTCTCGACA TTGTATTGATTAACACTTCTTTGATCTCTTATTCCTATGTATATATCATTCTTCTTATTTTCATT TTTTATCTCTTCAATTTCTATTTTTATAATTTCTTCCTTATCAACCATTTGTGATTTATCACAAC ACAACTCTTCATTTCTATTTTTTATGAAAATGGTGTTTTGATTTAATATTATATTTTTATTTATA TTTCTATTTATGAACAGATTAAATTCTTGTATATATATATCGGTA Found at i:1020500 original size:7 final size:7 Alignment explanation
Indices: 1020488--1020501 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 1020478 AGTACAAAAA 1020488 AAAAATT 1 AAAAATT 1020495 AAAAATT 1 AAAAATT 1020502 TACAATAAAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29 Consensus pattern (7 bp): AAAAATT Left flanking sequence: Indices 1019988 -- 1020487 AAAAAATTTATATAGTTAAAAATAATACAAGTTAAAAGGTCATATCTACATCATATACATATTAC ATATATTTATGTACTATATCATAATGGAAAAATGTGTTAGTTGCAAATATTATTTTATATTATAT TATAACATTTGATCATTTTCAAATAAAAAAAAAAAATAAAAAATAAAAAAAAAATAAATAAATAA ATAAATAAATATCTATACATAGAACATATTTATGGTTCCATTGTCCTCAACATTTATATTATTTT ATTTATATTATTTTATTCCTTGGGCTTTGTGATTTTCTTTATATTTTTAATGACGTAATTGTGTA TATGTATATTATATATATATATATATATATGTCCAATATGAAAAAAAAAAAAAAAATTAAGGAAA TATTATATATATTGTTAACGAATAATATTAGTATATTAACAATGATAGAAAAATTTTATATGCAT AAATATATTGCGAGAATTCAAAAAAAGGTAAAAAAAGTACAAAAA Right flanking sequence: Indices 1020502 -- 1021001 TACAATAAAATGACCAACATGTAATATATATATATATATATATATATATATATATATTAATAGCT TTGGTTTGTTTTTTTATTTTTCCCTTTTGTCAGACATTTTTTCTATAAACCGTTAAAAAAAAAAT TAATCAAATTTTATGATATATTTATGAAATTTAATTTAATTTTATATATATATAATAATATATTA TAGTTATTATTAAAATGTTTCCTTTTTTTTTCAGTATATTAATTAATGTACAACTTAATTATTAA TATAATTATATTAATACATATATATTTATATATAATATAATATATATGTTTTTTTTTTTATAATT TATATTATATTCTATATATATATATATATATATATATATATATAATATATATTATTATGTATTTA TAAAGATTATTTTAATAAATAAATGAAGAAAAAAGAAAAAGTATTTCCATATGTACATGCAAAAG GAAAGATATAAATTTACATACTATAATATGAATATATTTTTTAAT Found at i:1020929 original size:7 final size:7 Alignment explanation
Indices: 1020917--1020931 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 1020907 TAAATAAATG 1020917 AAGAAAA 1 AAGAAAA 1020924 AAGAAAA 1 AAGAAAA 1020931 A 1 A 1020932 GTATTTCCAT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00 Consensus pattern (7 bp): AAGAAAA Left flanking sequence: Indices 1020417 -- 1020916 CAATGATAGAAAAATTTTATATGCATAAATATATTGCGAGAATTCAAAAAAAGGTAAAAAAAGTA CAAAAAAAAAATTAAAAATTTACAATAAAATGACCAACATGTAATATATATATATATATATATAT ATATATATATATTAATAGCTTTGGTTTGTTTTTTTATTTTTCCCTTTTGTCAGACATTTTTTCTA TAAACCGTTAAAAAAAAAATTAATCAAATTTTATGATATATTTATGAAATTTAATTTAATTTTAT ATATATATAATAATATATTATAGTTATTATTAAAATGTTTCCTTTTTTTTTCAGTATATTAATTA ATGTACAACTTAATTATTAATATAATTATATTAATACATATATATTTATATATAATATAATATAT ATGTTTTTTTTTTTATAATTTATATTATATTCTATATATATATATATATATATATATATATATAA TATATATTATTATGTATTTATAAAGATTATTTTAATAAATAAATG Right flanking sequence: Indices 1020932 -- 1021431 GTATTTCCATATGTACATGCAAAAGGAAAGATATAAATTTACATACTATAATATGAATATATTTT TTAATTATTTATTATATATATATATATATATATATATATATATATATATTTTTTTTTGCCTAATC TTAAAAATTAATCTTTAAAAATAAATTATAAAGTATGCATTGAAATATATATATTATATATGTAT ATATATATATATATATATATATATTTTGTTTATTTATTCTTAAAAAAAAAAAAAAATAAATAAGA GGACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTCTTTCATTGCTTTTTTTTCTTTTTGAGG TACGCATTATTTTATTTGTATTTTAACATAAGGATAATTTTTTTTTTTTTTTTGAATATTTAATA AATTATTTTGTAAAAGAGGTTAAAAATATAAGTAATTCCGTTAGATATTTTTTTGTAAATTATGA AGTTTTAATAAATTTATAATATATATATATATATATATAATATTT Found at i:1025063 original size:6 final size:7 Alignment explanation
Indices: 1025046--1025063 Score: 36 Period size: 7 Copynumber: 2.6 Consensus size: 7 1025036 TCATAATTCT 1025046 TTTTTTA 1 TTTTTTA 1025053 TTTTTTA 1 TTTTTTA 1025060 TTTT 1 TTTT 1025064 ATCAATATCA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 11 1.00 ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89 Consensus pattern (7 bp): TTTTTTA Left flanking sequence: Indices 1024546 -- 1025045 AATATATTCTGTTTTTTAAAAATATAATCAGAAGAAAATAATTTTATCTTATTTTTATTATAATT TAAAAAAAGTAATAAAAATTCTTCCATCGGATATAAGGTACCACCGATCAATATAACATTACTAC AATCTTTTGTAATACTTTGGAAGTTATTACAAGAACTAACACTTATAACTTCGATTTCGTTAAAT AAGTCTTTTCTTTTTTTTACAAAGAATTCTTCAAAAAATATATTCAGGTTATTATATGTATCATC ATTGAATCCTTTTTTATCATCATTATTAAAATTATCATCACTCATTTTAATATTTTTATTTTTAC ATTTTTGAGTGTTATTTATACAATTACTTCTTTTACACATTACATCGTTGACATCTTGATCTTTA CTATCATCCCAATCATTCATAAACAACTCTTTCTTTGTGTTATGATTACCATTTTGTAATTTATT TTTCTTACTATCGACAGGTGTTAGACCATGTGATGTCATAATTCT Right flanking sequence: Indices 1025064 -- 1025563 ATCAATATCACAATCCGTGGAAAATATATTTTGTTCATCCTTACAATTGTTTCCGTTCAGGGTGC GTGTCGAATGATTTATTTGATTCATGAGATTATTTTCAGAGTGTTCTATTGTGGGAGAATAATTA TCATTATAATGAATAGACACATAATCATATAGATTGGATTTAATAAGTTTCTGAGTAAATTCATT TAATATATATATAGCAGTGGTTTTAAAAATAGGAAAAGAAGCATGTAGATATTTCTTAATATTTT TAAAATATGTAGACATTAAAGATTCTGTAAAGATTTTGATTTTCCTACAAAACATCGAATTATTT AAAAAATTTGAAATATTATTTAAATTTAATACATCTAACTTTGATAATAATGTATATTTATTTAT ATTAATTAAATTTTGTTGAATCGATGTAAAACTTTCTAAAAGTAAATTACAATAGACAATAATTT GTTTTATCATTATAATATTATTATTATTTAGAACATTTTTATATT Found at i:1029332 original size:7 final size:7 Alignment explanation
Indices: 1029320--1029333 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 1029310 GGAAATGAGG 1029320 AAAAGAA 1 AAAAGAA 1029327 AAAAGAA 1 AAAAGAA 1029334 TTTAATATAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00 Consensus pattern (7 bp): AAAAGAA Left flanking sequence: Indices 1028820 -- 1029319 ACAAAAATGTATATACATACATACATATATATATATATATATATATAATTATTTATTTATTTATT CATTCATTCATTCATTCATTCATTATGTGACATATAAAAAATGTGCATCTTAACATATATACATA ATAACCTTTATTTATAGTTTACAAAATGTTGCTGACCAAAACTTGAGAGAGACCTATGAAAGTAT TATTAATAAACAATGTAACCAGAACAAGGAATATGTGTTTCTACATTTAGATTACAAGTTAGAAA ACGATCTATTTCTTCTTATGATTAAAAGAGGATTACATACTTATGTTGAAGATGTATATTATAAA ATCATAAAGATATCTACTAAAAATATGTTTGGAAAAATATATAAAAAAGTTATGAAATATTACTT TATTGATTATATACAAAAAGTAATAAATACAAATAATCATTCTATACAAATCAAATGTAATAAAA GAATGGATGGTAATAATAATGTCTCAACCTATTTTGGAAATGAGG Right flanking sequence: Indices 1029334 -- 1029833 TTTAATATAACCTTACGTAAAGATATGTTATTATATCAAATGGATCATAGGAAATATTTCAACTA TTTAAATAAATGTTTTCAACATGCAAAAAATATAAACCTAAAAAATGATGTAAATATAAAAAATA AAAATATGAATAAAAAATTCAATCATTCTTTCTCGCATCAATATAACATTAACCAGTATGAAATT TTCAAAAAAAAAAAAATACAAATGAAGGGTACATATTCTCATGATAACACATTTAATCATAATTT TGCTTATCATTATAATAGCGACACAATTCTGGTAGGAGACAGAAAGGAGAGATATGCTATTAATC ATAATATATGTAATATGAAGAATAAAAAAGAAATTTATACACATAATAGTAATAATATATATGAT AATAATAATAATAAAAAATGTTTTAATAATAATAATATATATGATAATAATAATAATATATGTGA TAATAATAATAATATATGTGATAATAATAAAAAATATGATCGTAA Found at i:1030513 original size:11 final size:10 Alignment explanation
Indices: 1030488--1030512 Score: 50 Period size: 10 Copynumber: 2.5 Consensus size: 10 1030478 ATCTAAAATC 1030488 AAAAATAAAA 1 AAAAATAAAA 1030498 AAAAATAAAA 1 AAAAATAAAA 1030508 AAAAA 1 AAAAA 1030513 AATATTACCA Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 15 1.00 ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08 Consensus pattern (10 bp): AAAAATAAAA Left flanking sequence: Indices 1029988 -- 1030487 GAAAACAATCCCTTTTATATTAGTTACATGAATTACCATTTAAATCTGTATAACATTTTTTGTAA ACAATTATATAACCATTTTATGAATAAAATAATTTTTGAGACAAAAAAAGAAGATATGTATTTAT TTAGTATGGATATAATTATCTTCATTGGATTTGATAAATTAGTTTTATGTAATATAAATGAAAAT ATGAAACCGGAAAAAGACAAAAGTAAATATAATAACATAAAAAATAAATATAAATACTTATCTAA TAATTCTCTATACTTTGATAAAAACATTATAATCTTTAATAAAAATACACACCATTTTTTAATAC AAAAAAATTATAAAACATTAACAAGGGAAAAGAAATTAAACCTTATACCTATAGGAATGAAATCG GTGTGTGATTTATATACATTAATTAAGATAAATATAATCGATGACTTTTTTTTATATCATAAATA TAATAAACAGGAACAACATTATTCGTTCATAAATCATCTAAAATC Right flanking sequence: Indices 1030513 -- 1031012 AATATTACCATAAGTGTAGAACCAAATATTATAAATCTTAATGTTATAAATACGTATGAAATTTA TCATACCTCTTTTGAAATATGTTATGATTATAAAGAGATAGAAGAACATGATATATATACATATG AAAAGTCTCATCCTAATAAAAACAATGCTCAACTTATTTCATCTACATTCTTTTTCAATAATAAT CATAATACATTGTTATGTGATAAAAAATATTATGAAGAAGAAAAGGAAGAGCGTTATTCATCAGA CGGGAAGGATAATGTTTGTTGTGTCATCTTCGGGGGAAATAAAAAGGATAAAAAATTTGATGAAG GGGAGAATAAAACATTTGATGCGGGGGAGAATAAAACATTTGATGCGGGGGAGAATAAAACATTT GATGCGGGGGAGAATAAAACATTTGATGCGGGGGAGAATAAAACATTTGATGCGGGGGAGAATAA AACATTTGATGCGGGGGAGAATAAAACATTTGATGCGGGGGAGAA Found at i:1034883 original size:7 final size:7 Alignment explanation
Indices: 1034871--1034884 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 1034861 ACTTTAATTT 1034871 TTTTTTA 1 TTTTTTA 1034878 TTTTTTA 1 TTTTTTA 1034885 ATTAAACTTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86 Consensus pattern (7 bp): TTTTTTA Left flanking sequence: Indices 1034371 -- 1034870 TATATCTTTTAAAAAAACAATATCTATCTATTTATATGTATTTATAAATGTAAAAAAAAAAAAAA AAAAAAAAAATGTAATAAAAATGAAGAAAAAATAAAATATATATAATATATATAATATAAATAAT ATATTTTTATGCGTATATAAAAAATATATATTATATATTATTAATATATATATATTATATATTTT TATTTTTTTTTTTTATATGTATTATTTATTGTGTTTCATTGCATATATATATATAAAATAATAAC TAAAAATCATATTTTTTTTTTTTTTTTTTTTTTTTTTTTTATATTATTATTAAAAATTATAATTA TATTATTATATATTTTAGATTGAATATTTTTATCCTTTTATAAATTTTATGTATTTTATATATAT ATATATATATATGATGAATGTTAAAAAAAAAAAATAATAATATAATAAAAAATATATATTGAAAA AAACATATTTTTATATGTTATAAATGAATTAGTAGACTTTAATTT Right flanking sequence: Indices 1034885 -- 1035384 ATTAAACTTAAACGTTCCCTTATAAAATATATATATTATATATATATATATATATAACCACATGT CATTAGAAAAAAAAAATTATTAAATCAATAAATTAATATATATATATATATATATATATTTATTT ATTTATTTATTTATTAATTTATAATAATATTGTTTTAGAAAATAATATTAGAAATATAACATTTT GAATATATCATTTTTTTTAAAATGAGTGATTTTTCAAGGGATATGTCAAATAATGAAAATTCAAA AAAAATCGCATTGTATTCTATATTAATATACAAATATGAATCATCTAATCAACCAATTTTTTTAA CATCGGCACTAGATTTATCTTCATTTCCTTTTTTTCATAGATCTTCATTAAAAGAACATATATAT TTTCATGCACGTCTTGTATGTGGAAGGACACAAAAAGGTACACGTGAAGTTATAGAACTTGAATC GGGTATAGGTCATTTACATATTTATACAAATAAGGAAAATAATAT Found at i:1035949 original size:7 final size:7 Alignment explanation
Indices: 1035937--1035950 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 1035927 TACACAGAAA 1035937 TATATAT 1 TATATAT 1035944 TATATAT 1 TATATAT 1035951 ATGTGGAAAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57 Consensus pattern (7 bp): TATATAT Left flanking sequence: Indices 1035437 -- 1035936 TTAATCGATTTAACACATAAATTATTTGCTCAAAAATGTAGAGGTATGTATGAACATGTTCGTCA AGATTTAAAAGAAGGTATGCTTATTCAAAATGAACTTAACGATTTATTAAAAAAATATCAAAACC CTTCAGAGGCTGATAAATTATCAAGAGTACAAAAAGATCTAGACGAAGTAAAAGATGTTATGTTA AAAAATATTGAGGACCTTTTACAAAGAGGAGAAAAGTTAGATGACCTCATGAAGAAAAGTCAGGA CCTTTCCAATTCCTCCTACCAATTTTATAGGTAATATTAAAGAAATAAATAAATATATATATATA TATATATATGTATGTGTGTTCATATTTTTCTTTATAGACAAGCCAAAAAAAATAACCAGTGTTGT AGCTTATACTGAAATCATCCATCTTATTAATCACACGAAGGGAAACAAAAAATGTTATTAACATA TATATATATATATATATATATATATCAAAAATATGTACACAGAAA Right flanking sequence: Indices 1035951 -- 1036450 ATGTGGAAATTACAACCTTTTTTTTTTTTTTTTTAATATACTTTCATTTCCCTAATAAAAGTCAT GTGCAAAAAAAAAAAAAAAATAAAAAGTAAATAAATATATATATATATAATCACATATATGTATA ATATTTAACAAATTGTTTTCTATCATTTGTGCAATAATAATTAAATGAAATATAAATTAAATGCA TAAAAAGAATACATAAATAAATGCAAATATATATATATATATTATATATATATTATGTCTTATCC CGTATCACACTCTTTTTTTTTTTCTTTTTTTTTTTTTTTAAACCTTAAAAAGTGAATATATTATA TCCATTCGTAACATGTTTATTTAATCTACATAAATATATATTATATATCCTTTTTATAACCCTTT ATATATATATATATATATTTTTTTTTTTTTTTTTTGTTATCATATTTTTTTTTAAATGTAATAAT ATATTTTTATTTCTTCAATTTTTATGATGTGTTACCTTATGAAAA Found at i:1036322 original size:7 final size:7 Alignment explanation
Indices: 1036310--1036323 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 1036300 TCTACATAAA 1036310 TATATAT 1 TATATAT 1036317 TATATAT 1 TATATAT 1036324 CCTTTTTATA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57 Consensus pattern (7 bp): TATATAT Left flanking sequence: Indices 1035810 -- 1036309 AAAATAACCAGTGTTGTAGCTTATACTGAAATCATCCATCTTATTAATCACACGAAGGGAAACAA AAAATGTTATTAACATATATATATATATATATATATATATATCAAAAATATGTACACAGAAATAT ATATTATATATATGTGGAAATTACAACCTTTTTTTTTTTTTTTTTAATATACTTTCATTTCCCTA ATAAAAGTCATGTGCAAAAAAAAAAAAAAAATAAAAAGTAAATAAATATATATATATATAATCAC ATATATGTATAATATTTAACAAATTGTTTTCTATCATTTGTGCAATAATAATTAAATGAAATATA AATTAAATGCATAAAAAGAATACATAAATAAATGCAAATATATATATATATATTATATATATATT ATGTCTTATCCCGTATCACACTCTTTTTTTTTTTCTTTTTTTTTTTTTTTAAACCTTAAAAAGTG AATATATTATATCCATTCGTAACATGTTTATTTAATCTACATAAA Right flanking sequence: Indices 1036324 -- 1036823 CCTTTTTATAACCCTTTATATATATATATATATATTTTTTTTTTTTTTTTTTGTTATCATATTTT TTTTTAAATGTAATAATATATTTTTATTTCTTCAATTTTTATGATGTGTTACCTTATGAAAATGA TATATTTTTTTTGAAAATATATATAAACATATATATATATATATATATACATAAATACATATATT TGTTTTTATTTTTTTTATTTGTATAAAACCATCTTTTAAAAATAATAAAAAAAAAAAAAAGGACC TTTTAATTCATTTTTGTTACAAATACAACATTCGGTATATATCATACATAAAAAAAATAAATAAA ATAAAATTAAAAAATAAATTATAATCTCAAAAAATAGACATAAAATTTTTATGTTTTTTTTTTTT TTTTTTTTTTTTTTTTTCTGTTTATGAGTTTTAAACAAGAGATGGTTCATTCATAAAAATGGTAT CTTGCATATCTACATAAAAAAAAAAAAGGAATATACACACATATA Found at i:1039112 original size:8 final size:8 Alignment explanation
Indices: 1039099--1039118 Score: 40 Period size: 8 Copynumber: 2.5 Consensus size: 8 1039089 TACAGTGTTT 1039099 TTTTTTTG 1 TTTTTTTG 1039107 TTTTTTTG 1 TTTTTTTG 1039115 TTTT 1 TTTT 1039119 AAAGTACTTA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 12 1.00 ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90 Consensus pattern (8 bp): TTTTTTTG Left flanking sequence: Indices 1038599 -- 1039098 AATATGTCACTCATATCATGCTCATCATTTTTATCAATAAAATTATTTATATTATTTTTATCATA ATTTCCACTTTTATCATTCATGTGAATTATATCATTTTTGTTACTTTTATCATTTTGATTTTTTT CCATTTTGTTCTTTTTTAGTTTAAAATTATGAACTGTTCAGGTAAATATTGTGCTACCTCTTAAA AAAAAAAAAAAAAAATTGTTTATAATGTAAAAGCATTATATGTTGCCCTAAGTCGTTTTCTTTTT TTTTTTCAATATATTTATAAATATATGATAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT AGCTAGCCAAAAAATATGCATATATATATATATTTAATAATCTTTTGAAAGAATATATATGAACA AAAATTTATATATACAGGTGTGATATTAGAATAGGGACGACTTTTTGAGAATTAAAAAAAAAGAA ATTATATATAATATATTATAAATATAATAAATATTTACAGTGTTT Right flanking sequence: Indices 1039119 -- 1039618 AAAGTACTTAAAAAAAAAATATATATATATATTATATATATATTCATATATTTTCACATTTCACA ATTATAATATTTTCTCATTTATAAAGTTGATTCGATATTCCTTTGTGTTACCGAATTATATATAC CATAATGATAATAAAAAAAATAAACTACCATATAAACATTTTTTACGAAATAATAAAAGATATTA TGTTAATTATGAGTACCAACCAATGAATGACAATAAAATATTGTTAATAATATACAGTTTCCTTT TTTTTTTTTTTTTTTTTTTTTTTAATACATAAATATTTGTTATCAAAAGGTGAAAAAGTAAATAA ACAAATGGTTCTTTTTAAAAACTTGTAAAATACTAACTTTTAACAAAGCATAAGAAATAAATATT TATTTGTTAAGGTGGTAAAACGTGTTTTGTAAACATATAAATATGATAACATTTAAATATATCTT ACAACAAACAAAATATATTATATATATATATATATATATATATAT Found at i:1039182 original size:7 final size:7 Alignment explanation
Indices: 1039170--1039183 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 1039160 ATTCATATAT 1039170 TTTCACA 1 TTTCACA 1039177 TTTCACA 1 TTTCACA 1039184 ATTATAATAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.29, G:0.00, T:0.43 Consensus pattern (7 bp): TTTCACA Left flanking sequence: Indices 1038670 -- 1039169 ACTTTTATCATTCATGTGAATTATATCATTTTTGTTACTTTTATCATTTTGATTTTTTTCCATTT TGTTCTTTTTTAGTTTAAAATTATGAACTGTTCAGGTAAATATTGTGCTACCTCTTAAAAAAAAA AAAAAAAAATTGTTTATAATGTAAAAGCATTATATGTTGCCCTAAGTCGTTTTCTTTTTTTTTTT CAATATATTTATAAATATATGATAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCTAG CCAAAAAATATGCATATATATATATATTTAATAATCTTTTGAAAGAATATATATGAACAAAAATT TATATATACAGGTGTGATATTAGAATAGGGACGACTTTTTGAGAATTAAAAAAAAAGAAATTATA TATAATATATTATAAATATAATAAATATTTACAGTGTTTTTTTTTTGTTTTTTTGTTTTAAAGTA CTTAAAAAAAAAATATATATATATATTATATATATATTCATATAT Right flanking sequence: Indices 1039184 -- 1039683 ATTATAATATTTTCTCATTTATAAAGTTGATTCGATATTCCTTTGTGTTACCGAATTATATATAC CATAATGATAATAAAAAAAATAAACTACCATATAAACATTTTTTACGAAATAATAAAAGATATTA TGTTAATTATGAGTACCAACCAATGAATGACAATAAAATATTGTTAATAATATACAGTTTCCTTT TTTTTTTTTTTTTTTTTTTTTTTAATACATAAATATTTGTTATCAAAAGGTGAAAAAGTAAATAA ACAAATGGTTCTTTTTAAAAACTTGTAAAATACTAACTTTTAACAAAGCATAAGAAATAAATATT TATTTGTTAAGGTGGTAAAACGTGTTTTGTAAACATATAAATATGATAACATTTAAATATATCTT ACAACAAACAAAATATATTATATATATATATATATATATATATATAATAACATTTTTAGCGGAAT CAAAAATATAAAATTATTTTTTTTTTTTTTTTTAGTGCAGAAGAA Found at i:1043180 original size:8 final size:8 Alignment explanation
Indices: 1043167--1043183 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 1043157 GTTCTAGTGC 1043167 TACGTTCA 1 TACGTTCA 1043175 TACGTTCA 1 TACGTTCA 1043183 T 1 T 1043184 CTAAACAAGC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.24, C:0.24, G:0.12, T:0.41 Consensus pattern (8 bp): TACGTTCA Left flanking sequence: Indices 1042667 -- 1043166 AAATAGAAAAGAAAAAATAGAATTGCTATAATAATAGCTAGCTGTATTTGAAAATAGGTTAATTA TATAACAATTTATAATATCTAATATATTAATTAAAGATATCTGTAATATGAATAAAGATAATATA TTTCTTTTTTCTCTTTATTCCTATTTAGGGTATAATATTCCTATGTAATTGAAGAGAAATAAGTT AAAATTTAAAAAATGATAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATAAAT AATTTGGACATAAAAATAGGGTATATGAAAAGTATGCAAATGTAATTACATTTGTTCATACATAT ATATGTAAATAAATAAATAAATATATTATATATATATGTATATATATTTATTTATTTTATTTGTT CAGTCTTCTTCAATGGCTCTTATATAAAATACATTATTTCCTCTTATAAAAGCATCATTATATTT ATCTGTTAATTCACCATCATAATATTCTTCAGTTTGTTCTAGTGC Right flanking sequence: Indices 1043184 -- 1043683 CTAAACAAGCAAGGATGCCCTTATAATCCGTACCGTTATTCAACCTAACAATTACTGCTCGACCT TTTAAACTTTCCACAAAATCCTTTGGCGAATTTGTTGACATAGTGAAATGATATAAATATATATT TGTGTGCTTATATAAATTTTATTTTTATGAAGCTTCCATATAAATATATTTTTTTATTATTTCAT AAAAATAAGAAATGCTCCTCAATTTTTTACCACAAAAAGGGACTAATATTTCTTTATTTAATCGA ATAAATTTTAATTCAAATATGTATATATATATAAAATATATTATATATAAATATATATATATATA TATATATATATAATATATATAATATTTATATTTTACTAATTATATGTATATAATATTTATCATAA AAAATATTGGTGACAAAATGAAATAATTTTAATGAAAGAGATAAATCATACCTTGTTTGTTTTAG AACCTTTTCAAAATAAAATCAAAAAAAAAAAAAAAAAAAAAAAAA Found at i:1046871 original size:7 final size:7 Alignment explanation
Indices: 1046859--1046877 Score: 38 Period size: 7 Copynumber: 2.7 Consensus size: 7 1046849 ACCCCTGAAT 1046859 ATATAAA 1 ATATAAA 1046866 ATATAAA 1 ATATAAA 1046873 ATATA 1 ATATA 1046878 TATTATTATA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 12 1.00 ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32 Consensus pattern (7 bp): ATATAAA Left flanking sequence: Indices 1046359 -- 1046858 GTCAATATTTTATTAGTTTTTAAAAACCTTATTCTTTGTGTGATACGGTTATTATATATATATAT ATTATTATATATATATATATTATTATATATTATTATTATTATTATTTTTTTTTTTTTTTTTTTTC TTCTTCTACTTTTAAAAATAATTTTTTAACAACTACTTTATTTTTATGGGTAAAAAGAAAAAAAA ACTTGTGAAAAAAAAAACATAAATATAATAATAATAAAATATAATGTTATTATATTTATAATCAT ATTATATAATAAATATATATATTTTACTTTATATATATATATATATAAATATAATGTATTTAAAA AATAAAATAAAACATTATTTGAAGAGAAAACAAAAAAAAAAGATTAATTGCTTTTTTAAAAATAT AAACAAATTTTCTCAAGATATAATTGTAAGTAATACCTTAATAATATAAATATATATAAATATAT TTATATATATGTAATATATATATTATATATATACTACCCCTGAAT Right flanking sequence: Indices 1046878 -- 1047377 TATTATTATAATCTTACTTTTTATAGATATTATACATATATATATATATATATATATATATTACA TATATGTAACAAGTCAAAGGGATATCCCAAAATAATAACCAAATATATTATATATATTATAAATT AATATATAATTATAATTATACCATAATTTATAGAATAAATATATAATATTAATATTTTATATATT ACTAAGTATACAAAAAATTATATATATTTATAAATATTTTATTTATATAATATTATAATATATAT ATATATATGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGTCTCTTTAAATCATTCTTAGAAA TATATTTTTTTTTCTAATTAAAATAATTGCACAGTGACTTTTATAATATTATAAAGAAATATTTT ATAAAATATTTATTTTAATATGGACTATAATAAATTATATTGTAAATATTATATTACCTAAGAAT TAAGAGTTATATATTTGCTATCATATATTTAGTTCTTTTTTGGAT Found at i:1049370 original size:7 final size:7 Alignment explanation
Indices: 1049358--1049371 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 1049348 ATATATGTGC 1049358 TTATATT 1 TTATATT 1049365 TTATATT 1 TTATATT 1049372 GTTGCATTGT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71 Consensus pattern (7 bp): TTATATT Left flanking sequence: Indices 1048858 -- 1049357 ATGTCTCAATCTAGCACTATGAAGAACACCCGCCATTCCACAAATTTTGTGAGGAGGTATATTTG CATGTTCTTGTAAAACTTTAGCCATACAATCAACAGGACTTGTTGTTACTACTACAAATGCTTGG GGACAATGTTTTTTTAATGACTTTGCAACTTCTTTCAACAATTTCACATTGGATGTATATACTTG TTTTTCTAAATCCTCTTCATCAAATTCTGCAAATTCTCTCTCAGATACTTCTATTGTTACTACTA CAACTAAGGAATCTTTAATATCGGTTATTTCATTTGTTCCTAATATATTTATCCTGGATCTATTT AATGGTCTTGTGTGTAATATATCTAACGCTCTTCCTTTTGGTAAATCTGAAGAATTAGGGATTTT ATAAAATTTTGGCTAGTCATGTATAAAATTCTAGCATATTAGCGTAATTGTTTTTTTTTTCTTAA CAATATATGTATATTATATATATATATATATATATATATATGTGC Right flanking sequence: Indices 1049372 -- 1049871 GTTGCATTGTCCATTTTATTCAATCATTTAATGTTTATAAATTTTAAAGAAATTAAAAATATTCT TACCTTTACGAAAATCATGTAAAACGACATCTCCTAAATTTTTTTCACAAATCATATGAGCCAAA GCGCAACCTATATCCCCTGCCCCCAAGACACTTATTTTGGGATGTTTTACTGATGTCATTTTTTT AATGGTCAAAAGTTTTTAAGGTACACTTATTTTATTATAATATATGTATATATATATATATATAT TTATATATTTATATATTTATTTATTTTATTATGTATATCCCTTGTAATATTATTTCCTCGAACCT TGTGATTCTTTTATTATCACGTCTAAAAGTATATTAAATGAACAATGATCTGAGGGAGAAACTAT TAAGATATATATATGTATATATATGTATATACTTATTTATTATATCTATAAAAAAAAAAAAACTT TCATTCACAAATTTTTTTTTAAATTGTCCAATACATAAAATATAT Found at i:1049782 original size:10 final size:10 Alignment explanation
Indices: 1049767--1049792 Score: 52 Period size: 10 Copynumber: 2.6 Consensus size: 10 1049757 ACTATTAAGA 1049767 TATATATATG 1 TATATATATG 1049777 TATATATATG 1 TATATATATG 1049787 TATATA 1 TATATA 1049793 CTTATTTATT Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 16 1.00 ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50 Consensus pattern (10 bp): TATATATATG Left flanking sequence: Indices 1049267 -- 1049766 TGTATAAAATTCTAGCATATTAGCGTAATTGTTTTTTTTTTCTTAACAATATATGTATATTATAT ATATATATATATATATATATATGTGCTTATATTTTATATTGTTGCATTGTCCATTTTATTCAATC ATTTAATGTTTATAAATTTTAAAGAAATTAAAAATATTCTTACCTTTACGAAAATCATGTAAAAC GACATCTCCTAAATTTTTTTCACAAATCATATGAGCCAAAGCGCAACCTATATCCCCTGCCCCCA AGACACTTATTTTGGGATGTTTTACTGATGTCATTTTTTTAATGGTCAAAAGTTTTTAAGGTACA CTTATTTTATTATAATATATGTATATATATATATATATATTTATATATTTATATATTTATTTATT TTATTATGTATATCCCTTGTAATATTATTTCCTCGAACCTTGTGATTCTTTTATTATCACGTCTA AAAGTATATTAAATGAACAATGATCTGAGGGAGAAACTATTAAGA Right flanking sequence: Indices 1049793 -- 1050292 CTTATTTATTATATCTATAAAAAAAAAAAAACTTTCATTCACAAATTTTTTTTTAAATTGTCCAA TACATAAAATATATTTTTTAAATAAATACATACATATTATATACATACAAATATATATCTATATA TATATATATTTATTTATTTATAATGTGAGCATATTTTTATTTTATACATGTATGAAAAAAATATG AATGTATTCGTTTGAATAAGAGAATAATTTCATATGACAAAAAAAGGGAAAGAAAAAAAAAAAAA TAATAAAAATAAAATAAAATAAAAGTGAAGTAAAAAAATAAAAAAATTAAAATTGTTTTCCAAAA TTATATATAAAAAAGGAAAAGAAAAAAAAAAAAAAATTTTTTTATAAGACAAATTAACTTAATAA CTATTTTTTTATCTCATAAAATTTGGTATTATGTGATAATAGTTTTTATTTACGATTTATGATTA TATATATTTCCCTTTGATGTTATAGGATGCTTAATAATAATTATT Found at i:1050758 original size:7 final size:7 Alignment explanation
Indices: 1050746--1050762 Score: 34 Period size: 7 Copynumber: 2.4 Consensus size: 7 1050736 GCATATTGTA 1050746 ATAATAT 1 ATAATAT 1050753 ATAATAT 1 ATAATAT 1050760 ATA 1 ATA 1050763 TATTAAGGAG Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 10 1.00 ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41 Consensus pattern (7 bp): ATAATAT Left flanking sequence: Indices 1050246 -- 1050745 TATATATATTTCCCTTTGATGTTATAGGATGCTTAATAATAATTATTAATTTTTAATAATACTAA GGTTGAAATTTATTACACTGGTGTTAAGAATAAGTATTCAAAAAATAAAATATATAAATATATAT ATAATATAAATGAATATGTGAGAACTTTAATTCAAAAAAAAAAAAAAAAAAAAAAATATATATAT AATATATATATATATATATATATATATATATATATAATATTTCTTTATGTATCTAATAATTATGC ATATAATTATCAAGACTAGCTTTAAGGAATAAACAGAATCCTATAAATAAATATACATGAAAAAA TAGAAAAAACGAAAAGCTACATATTTCGAATATGTGTATTAATTTTTTAAAAAAGAATATTACAC AAATGGAATAACATACATTTGTATATTCTTTTCATAATGTCTTTTATATAAAAATTATTAACTGT CTAAATTTTTACATATCTATAAAAATGATGGTTATGCATATTGTA Right flanking sequence: Indices 1050763 -- 1051262 TATTAAGGAGAAAATATTTTTTCATCACATATAAACGAATATAAATTTTTTAGGTATCTTTCTTT TTTTTGCTTATATTATAAACTTTAAAAGTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGAGA AGAAATATATTTTAATAAGAGTATACTTTTTTCCTCCTAAGAATGTTCATGTTAATAAAATTCTT CTAATCTTTAAATATAATATTACATATGAGATCTAAAAATTATAAATGAACAAGGCCAAAGATAA AGCACATAAATGAATATGAAATAAATAAATAAATAAATAAATAAATAAATATATATATATATATA TATTTTTTTTTTAAAAGAATAATAACAAATGGAAGATGAATTAATTAAGAAAGTGAAAAATATTT CACTTCATAAAGAAAATAAAAATGTGTATGATGAGAAGAGAAGCTTGAAAAAAAAAATAAGAGAT CTTGAAAATATGATAAATAATAAAATTATGGATTTACAAACAGAA Found at i:1051606 original size:7 final size:7 Alignment explanation
Indices: 1051596--1051610 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 1051586 AAAATATATA 1051596 TATTTAT 1 TATTTAT 1051603 TATTTAT 1 TATTTAT 1051610 T 1 T 1051611 TATATAAATA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73 Consensus pattern (7 bp): TATTTAT Left flanking sequence: Indices 1051096 -- 1051595 TTTTAAAAGAATAATAACAAATGGAAGATGAATTAATTAAGAAAGTGAAAAATATTTCACTTCAT AAAGAAAATAAAAATGTGTATGATGAGAAGAGAAGCTTGAAAAAAAAAATAAGAGATCTTGAAAA TATGATAAATAATAAAATTATGGATTTACAAACAGAATTATATAAATCTAAAGAAAAGGAAAAAG TTCATGAATATGATTTTAGTGATATATTAAAAGAATTTAAAGATGATGTAAAGAAAAAGATGGAT GAAATAAATGATATAGTTGAAAAGAAAATAGAAGAACAAAATGTAAAACATACGAAATTATTTAA TATGTTGATATCTTTAAAAAATGAAAACTCATCAATAAATAAATCTATATCTTTATTAAATGAAA AAATACATATGATACAAGAGGACATTGGTGATTAAAATGAGGAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAATACATATAAATATATAAAAAATATAAAATATATA Right flanking sequence: Indices 1051611 -- 1052110 TATATAAATAAATAATATTAACAATTCTTTTATGATTCATATATCACATCATATTTTATTTTAAC TTTTATTTGTTATATCTTATGGTTATCTTTGATTGTTTATGTATATATATATATATATATATATA TATATATATATAATATGTTTTATTTTTAATTTTTTTTTTTTTTCCCATGTCCTTTTCTTTTTAAT ATATATATATATATATATATATATATATATATATATATATATATATTTATATATTTATATATCAT ATTCAAAAAAAAAAAAAAAAAAAGGTTTAAAATATAACAATATGATGACAACTATAAAATATGTC ATACGAATTACAAAAAATAAATATCTTAAACGGAATGCACAGTCGAACAAAGAATAAAAATAATT TTTGTTGCTCATATAAAAATAAAAAGGATACCAATAAAAATTGTATACAATAGTATATTTTTATG TATTTATAAATATATATAATATATTATATATATATATATATTTTT Found at i:1053414 original size:10 final size:10 Alignment explanation
Indices: 1053399--1053418 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 1053389 TAAAATAGTT 1053399 AACTCTTATA 1 AACTCTTATA 1053409 AACTCTTATA 1 AACTCTTATA 1053419 CGACATAGAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40 Consensus pattern (10 bp): AACTCTTATA Left flanking sequence: Indices 1052899 -- 1053398 ATTTATTTATTTATATATATATATTTACATTTATTTATTTATTTCATTTCAATATGTTGTCGCGC TCGCCTGTAAATAAAAAAAACAAGTTAAGTTCGTTGCCGAACAAATATTTTAAAAGCGAAATAAA AAATGAAAATATTTCATGTAAAAAGGAAAAAAGTGGTGATAAAAAATGGGAAGACACCAACTCCA TGTTTTGTAAATCAGAAGATAGAGAGAAAAATATTATGTTAAAAAATATTATAATATCAAAAAAT TCAATTAAAAATAAAATATGTACAAGCAAAAATTATATAGTACAAAAAGATATGAACAGTAAATT TGCAAGTTTAAAAAAGAACAAAAGAAAAATTAATTTACATAAAACATCTATTTTATCCATGAAAT CAAAAATAACAAAAATTAGTTCTTTACTAAAAAGAAATGAACATAAAGTAAATAGGAAAAGTGAT GAACATATAAAAAATAAGAACCACCTTAGTCGTAATAAAATAGTT Right flanking sequence: Indices 1053419 -- 1053918 CGACATAGAAAGGATGAGAAAAAATAAAAAAGATATAATGTTAATAAAAAATGAAAATAATTCAA AGGCAAAAAAAAAAAGTGTTTTAATCAAGAGCATCATACATAAACATTATAGTGAAGGTGCCAAG ATGGAGAGGAAATATATAAATGATTGTATTGATAATGAATGTAGTGATAATCATAATAATGAATG TAGTGATAATCATAATAATAAATGTAGTGATAATCATAATAATGATAGTAGTGATAATCATAATA ATGATAGTAGTAATAATCATAATAATGATAGTAGTAATAATCATAATAATGATAGTAGTAATAAT CATAATAATGATAGTAGTAATAATCATAATAATGATAGTAGTAATAATCATAATAATGATAGTAG TAATAATCATAATAATAATAGTAGTAATAATCATAATAATGATAGTAGTAATAATCATAATAATA ATAGTAGTAATAATCATAACTATGTATACCATTACCCTTTCAAAA Found at i:1055487 original size:9 final size:9 Alignment explanation
Indices: 1055475--1055498 Score: 48 Period size: 9 Copynumber: 2.7 Consensus size: 9 1055465 AAACTATTCG 1055475 TATGATTAT 1 TATGATTAT 1055484 TATGATTAT 1 TATGATTAT 1055493 TATGAT 1 TATGAT 1055499 GGTGAAAAAA Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 15 1.00 ACGTcount: A:0.33, C:0.00, G:0.12, T:0.54 Consensus pattern (9 bp): TATGATTAT Left flanking sequence: Indices 1054975 -- 1055474 CATATCCATACCTTGAGGATAATATAAAGCAATACCATGAAGAACATATATACGAATCTCTAGGA AGTAAAGATAGTCAAGACCTACAAAAAGGTAAGAACCTTCGTTCACATAAACCTAAATATTATGA TGATGAAGATGATGAGGATTTAATAATCAGTATGTTTGATAATGATCAGGAGGATAAAAATAAAA AAAAAGATAAACATTCTAATGATGATACAGAAGAGAAAATACATGAACATAAAAGAAACATAGAC ATTGTCCAAAAAAAAATGAATAGTATTAATAAATTTGAAGGAGTAAAAGAGTTTGATAAGGTAGT AAATAATATGAAAAGGTATTATAGTATAAATCATAAAACAAATAAAAAATGGAACCTATCAGAAT ATTGCGAGAATGATGAAAATATGAGTAAGGAAATAAAAATGGAAGAAATTAATACATACAATATG AAAAATATCAAAAATATGAATAGTACAAACAATATAAACTATTCG Right flanking sequence: Indices 1055499 -- 1055998 GGTGAAAAAAGTAATGTCCTTTCATATAACGTTAAAGAATCATATGCGCACAAGTCTCAAAAATA CGCATCAGATCTCGAAAAAAAGAAGCACACAAAAAATAATATTAGAAGAGGCCTTTACTTAGCCT CTAAAATTTTAAAGGATATACATGAAGAAAAACAAAAAAAAAAGAAAATAAAAAAAAAAGAAAAT TTACATAATTATGTTGATAAAAATAAATATGATAATAATTATATTCATAACGAAACATATAATGA TACATATTCAAATACAATTCCAGTATTCTATGGAATTAAAAAAAGTAAAAATATCTTATCTTCAT CTTACGATGATTTATATGTAAATATTAATAAAAAAAATAATACTAGTATAAATAAAAATAATAAT ATTCTTTGTGATAATAAGTATGATCATAGCGATATAATGCCTAGTCATAAAGGTAAAAAATGTAC AGATAATAATTATGTGGATAATGAATTTTTGAACATGTCAGGAAA Found at i:1060668 original size:7 final size:7 Alignment explanation
Indices: 1060656--1060669 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 1060646 ATTTATTAAT 1060656 ATGAAAA 1 ATGAAAA 1060663 ATGAAAA 1 ATGAAAA 1060670 TGGAAACGTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14 Consensus pattern (7 bp): ATGAAAA Left flanking sequence: Indices 1060156 -- 1060655 AGTTAAATGAAATAAATAATGTTTTACATATTCGAGATCATAATAAAGAAGATAATGATAATAAA AATAAGATATGTAATCGAAAAGGTTCATCTATATATATAGAAATATTAAACAAAACATATAATAT AACCAAAAATATTGATATTATAAATGAAGAAATATTTAATATGAAAGAACAAAAAAATGATAACA ATATAAAAATTTCGAATATTTTAATATATTTAAATATTATATCTACAGATATTATGTTTATACAT ACAAATATTTCCTATATAAATGAATATATAACGAAAAGTACTATATATCTCGATATTCATCATTT AAAAAATACTCTTCTTTATAAGGTCTCTACAAAGGATAATATAAATGTGCATACATCATCAACAT TATGTAAGGACACTAATGAATTTAAAAAATATAATAATCAAATAAATAAAACTAATACTAATATA ATTGTGGATGATCAACAAATATTTAAGGAGCAAGAATTTATTAAT Right flanking sequence: Indices 1060670 -- 1061169 TGGAAACGTAAAGAATATTGAAAGTTATGTAAATGGTGATGATATATATAATGATAATATAAATA ATGATAATATAAATAATGATAATATAAATAATGATGATATATATAATGATAATATAAATAATGAT AATATAAATAATGATAATATATATAATGATAATATAAATAATGATAATATATATAATGATAATAT AAATAATGATAATATATATAATGATAATATATATAATGATAATATAAATAATGATAATATAAATA ATGATAATATAAATAACCATGGTGAGGAATACCATCACAGTGGCGATATTATAAATAAAAATATA CTATTTACAGATATGAAAATAAAAAACAAAACAGATAATGTAACAAACAATATTATAAACAAACA ATATGATGAACATATAGAAGATGTATTAACCTTTTTTGAAGTATCCTTTTGTAGTGATCTTTTCT TAATATTATGTCATATGTGCAAAAGTATTAATGAAGTTAATTGTT Found at