TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 97739981 P. falciparum 3D7 GENOMIC chr7 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 1350452 ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41 Found at i: i:453776 original size:9 final size:9 Alignment explanation
Indices: 453762--453779 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 453752 CTTTCAACAT 453762 TAGTACCAC 1 TAGTACCAC 453771 TAGTACCAC 1 TAGTACCAC 453780 CACTAGCAGC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.33, C:0.33, G:0.11, T:0.22 Consensus pattern (9 bp): TAGTACCAC Left flanking sequence: Indices 453262 -- 453761 AAGTTTTTTCATTCTCCAATATATAGAATCTTTTAACATATGTGCCACCCAATAGTAAAAAAAAT TATTGAATGTCTTTTGGATTTCATCAGGGTCATTATCAGTCTTTTTTTCTTTTTTTAATATGCAC AATCCGCCTCCAGTTTGTACATCCGCTTCATAGTCTAGGTCATCCTCACCCCCTTCTTTTTGATC TTTCGTCAGCTCACCAATTTGATAACATTGCCATGGATCATACAAAGAAGGATCACTATTACCAC TATCTTTATTATCACAAAACGCCTTTAATTTTGTTTCAATATCTTTTTCTTCTTCACCACTTTTA AGGATTTTAATAGTAGTACCAACTTTGTCATCTCTAGGCTTATAAAGGTTTATACTCTTGCACTT TTCAATTTTATCTTTCTCTTCCCATCCACTACCACCTTTACGTTCGACCCCACATAGAGGACATG GTTGGCAATATTTTGAACGATAAAATGTTCCTTGACTTTCAACAT Right flanking sequence: Indices 453780 -- 454279 CACTAGCAGCACCACCAGTATTAACTTCTTTAAAATCAATTTTTCCTCCTTTGTCGTCGTCAACA GCTGTGCATGCTTTTTCATTATTTAATAATACCAAAAAAGTTTCAACGCTTCCATATCTATTTTT TAGTTCCTTATAAAATTTTTTTTCATACCCATTATCATAATTACTACGTACATTTCGTCTTTGCC TACTACCACCTGATGCTCCCTCTGTATATATTTTTATTTCGTCAGCGTATTTGTTTCGTTGTTTT AGAAATTGTTTTCGTTGGTTATCTATCCAATCAACGTAAGGATTACATGCAAAAAAACAGTCAGT GCAACCTTTACCCATACGTACTTTACCTCGTGCGTTAACTGTTTTTTCGCAATCAAATCCATTAC GGCTACAATATCGTTCTTCACCCTGGTACTTGCCACGACAATATGTTTTAACTATATCAACATAT TTTTTCTTTTTCCTACAAAAGTCTTCGGCCCATTCCTCGAACCAG Found at i:463162 original size:8 final size:8 Alignment explanation
Indices: 463149--463164 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 463139 TCGTCTTCCC 463149 ATTCTTCA 1 ATTCTTCA 463157 ATTCTTCA 1 ATTCTTCA 463165 TATATATTCG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.25, C:0.25, G:0.00, T:0.50 Consensus pattern (8 bp): ATTCTTCA Left flanking sequence: Indices 462649 -- 463148 TTTTCCAATTCTAATTTTTGATTGTCTATCCATTTTACAAAACGATGGCACGAAAAAAAACATTT AGCACATGCTTGGCTAATAGTATATTCATCGTTTGCTCTGATCGTTGCTTTACAATCATATCCAT TAAGACTACAATATAATTTTGATGATTCATCACGACAAAATTTTTGAGCATTTTGTAATTTTTTT TTTCTTTTTCGACAAAACTCTTCTGCCCATTCCTCGAACCATCTTAAATATTGAGGCACATAGTC CATATTAGTAGGAGGATCTCCACTAAAGCATCTACATTGTCCCTTATTAGATTCTGTTATATGAT TGTGTGGTCCCTTTTTCGTATATTGAGCATCAGGTGGCGCATGACATGTTAATGCTTTCCATATA TCATTTCTATTAGCATTCCACCAATCTTCTCGTAATTGAAAAAAATTTCCATCCTCATCATCTTT TTTGTAGCGAGTTTCTATCTCCCCCTTCTTCCCATTCGTCTTCCC Right flanking sequence: Indices 463165 -- 463664 TATATATTCGCGAAAATATTTTTCAAATTTTCTTCTAATTTTTTTTTTTCTCCTTTGTCACCACG ATACAGATCCTTTCCTCTTATAATATCTCCTATATCTGCAAAACTTCGTGCTAATGCTGTACAAA TAACTTCATTGTTATTGCGGTCTTGAGGATAGTTTTTAATTATTGATTCTCCTTCATGTTTGGCT GCAAGACATACATCTGCCAATAAATTATCAGTACTTGTGATTTGTTCAGGCCTTATTTGTTCTAA ATTTTGATCGCATACATGCAATCGTCTATATGGAGCACAGGCTCCTACAGTATCGCTAGTACTAT CTTTTATTCTATTTTTAGTACATTGACTTCGACTTTCATCAGAAAAACGGACTGGCCATCTTCTA TCACATGGGTCATCTTTTCCTGTCGTAACATTAGTGTGATATTCATGATTAAGTTGGCATGGATC TGAAGGAACATGTGACACACCAACAAATTTTGCTTCCCATAATTT Found at i:465799 original size:7 final size:7 Alignment explanation
Indices: 465787--465800 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 465777 TTGTAAAGAT 465787 ATATATA 1 ATATATA 465794 ATATATA 1 ATATATA 465801 TATGAGTCCA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43 Consensus pattern (7 bp): ATATATA Left flanking sequence: Indices 465287 -- 465786 CTTAACTGTAATGCATATCTATCTTAACACAGACATATACACAAATAAATATATTAACTTATATG TATCTATTCACATATAAATATATAATGAACAACCCATATATACTTATAGCCTTATATACACCCAA TCAAAAACACATAAATATATATATATATAATATTATATGATATACTTACAAGTTAGTATTTTGTA TGAAATACTATTATTTTAACTAATTTATTATTATTATATGATATTTAAATATTTTTCAAAAAACT AATCATGTTAATATAATATAATATAACATAAATTGACATAAAAAAATATAATTTTAAATATTTAT ATTTATCCTTAATATTAAATTCTTATTATTTCTATAATACATGTTACGTATTTGTAATTATGTTA CATTTTTAAAAAATGTATAATATGACTTATTATTCAGTATTCTTATTTTATTATTTTTATTTTCC TTATTAAGATTAAAATAATATTTACTTATTACTTGTTGTAAAGAT Right flanking sequence: Indices 465801 -- 466300 TATGAGTCCATAATTATATTAAGCTATTGGGAACTACAAAATCAGGATATTTATTTCTTATTTTT CATTTTTTTAAATAAAATTATTATTATTATATAGAACGCATTCACATATAAATAATTAGTCCATA ATATTCATCAAAAAAACACAAAATCGAAATTTCATTATGTAAATGTAGTTAATTATTTATAAAAT GGGACAAATTTTTTTTAATGTTATAATAGGAACCTTTTTAAGATAAAATAAACATTTTATATAAT ATATTTTATCCTATTACAGTAACATTTTTTATGCTTTCCATTTTTGTTCTTGTTTTTTTTTTTTT TTAACTTATAACTATATCATATACAAAAATTTTCATAAATATTATGAATTTTCCCCTTTATAATA ACTAATAATATATAACATAAAAATATATTATTTCTTCTATTTATTACTATATATAATGTTCTGTG TTACTTATTTAATATATACAATAATATAAATATACCATATTTTAT Found at i:465799 original size:9 final size:9 Alignment explanation
Indices: 465785--465802 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 465775 TGTTGTAAAG 465785 ATATATATA 1 ATATATATA 465794 ATATATATA 1 ATATATATA 465803 TGAGTCCATA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44 Consensus pattern (9 bp): ATATATATA Left flanking sequence: Indices 465285 -- 465784 CCCTTAACTGTAATGCATATCTATCTTAACACAGACATATACACAAATAAATATATTAACTTATA TGTATCTATTCACATATAAATATATAATGAACAACCCATATATACTTATAGCCTTATATACACCC AATCAAAAACACATAAATATATATATATATAATATTATATGATATACTTACAAGTTAGTATTTTG TATGAAATACTATTATTTTAACTAATTTATTATTATTATATGATATTTAAATATTTTTCAAAAAA CTAATCATGTTAATATAATATAATATAACATAAATTGACATAAAAAAATATAATTTTAAATATTT ATATTTATCCTTAATATTAAATTCTTATTATTTCTATAATACATGTTACGTATTTGTAATTATGT TACATTTTTAAAAAATGTATAATATGACTTATTATTCAGTATTCTTATTTTATTATTTTTATTTT CCTTATTAAGATTAAAATAATATTTACTTATTACTTGTTGTAAAG Right flanking sequence: Indices 465803 -- 466302 TGAGTCCATAATTATATTAAGCTATTGGGAACTACAAAATCAGGATATTTATTTCTTATTTTTCA TTTTTTTAAATAAAATTATTATTATTATATAGAACGCATTCACATATAAATAATTAGTCCATAAT ATTCATCAAAAAAACACAAAATCGAAATTTCATTATGTAAATGTAGTTAATTATTTATAAAATGG GACAAATTTTTTTTAATGTTATAATAGGAACCTTTTTAAGATAAAATAAACATTTTATATAATAT ATTTTATCCTATTACAGTAACATTTTTTATGCTTTCCATTTTTGTTCTTGTTTTTTTTTTTTTTT AACTTATAACTATATCATATACAAAAATTTTCATAAATATTATGAATTTTCCCCTTTATAATAAC TAATAATATATAACATAAAAATATATTATTTCTTCTATTTATTACTATATATAATGTTCTGTGTT ACTTATTTAATATATACAATAATATAAATATACCATATTTTATAT Found at i:469787 original size:7 final size:7 Alignment explanation
Indices: 469775--469788 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 469765 TTTTCTTTAG 469775 TGTTATA 1 TGTTATA 469782 TGTTATA 1 TGTTATA 469789 CAAATATATT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57 Consensus pattern (7 bp): TGTTATA Left flanking sequence: Indices 469275 -- 469774 TAACATATTTTCCTGTTATAAATTATATAAAAATGTGTGTAGTAATAGTTGCTAAAGGTGTACAA TACATTTATTAGAACATATAAGTATATAATACATATTCCAACAGAAACATATCATTGCATGTATA TAAAACATTTAACAACAAACATTGTGTATCATAATATATGATATGAAAAAAAACTTTAAATTAAT AGTAAAGAAATAATTTAATTTTATTATTTTTTGTAATATTCTTTTTGTTCTAATTTTTTTTTGTA TGTTCTACGTTTCTCTCTAATTTATCTAGGTGGTTACTAATATTAATATTATTATTATTTTATAC AAAAATGTTTGGAAATTTTTTAAAGGATTTATTTATTATTAAAATACTAAATTATATAATTATGA AAAAAATATATTCATATTTATTATTATTTAAAAAAAGAAAAAGAACAATTAAATAGAAAAGATAT TATATATATGTACTATTAGATACCAGATGGTATAGTTTTCTTTAG Right flanking sequence: Indices 469789 -- 470288 CAAATATATTTTATTAATAATTTACATATTATGAGATTTTCATAACATATACTAATATATATATA TATTTTAAATAATAGCTATAGAAATTTATCATATATTAACTGTATTATTACATACCGTAACAAAA TAATTAATTACTATATATATATTTTTAATTATATTATTATATATATTTTAAGCCTTATACAACAT TATATGTACTATGATAATGCATGCAATAATACATTTTTATTTGATATATAATTAATTATTATATA TATATATATATATATATATATATAAGTAATATATTATTTAATGTCTTACATTATGACAACTTAAA TGTTGTGTGAAAAATGTAATGTATGAAAATTGTTATTATATATTATAATAAAAAATTTTTATTAA TAAATTATAATGTGTATATATATGTTATAAAAATGAATAAATGAGGAAATATTTAAGAAATCTAA TTAATTGTATTTGAAAATGAACCATGCAAATATATTTCAAATATA Found at i:470159 original size:7 final size:7 Alignment explanation
Indices: 470147--470160 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 470137 TGAAAATTGT 470147 TATTATA 1 TATTATA 470154 TATTATA 1 TATTATA 470161 ATAAAAAATT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57 Consensus pattern (7 bp): TATTATA Left flanking sequence: Indices 469647 -- 470146 TAAATTATATAATTATGAAAAAAATATATTCATATTTATTATTATTTAAAAAAAGAAAAAGAACA ATTAAATAGAAAAGATATTATATATATGTACTATTAGATACCAGATGGTATAGTTTTCTTTAGTG TTATATGTTATACAAATATATTTTATTAATAATTTACATATTATGAGATTTTCATAACATATACT AATATATATATATATTTTAAATAATAGCTATAGAAATTTATCATATATTAACTGTATTATTACAT ACCGTAACAAAATAATTAATTACTATATATATATTTTTAATTATATTATTATATATATTTTAAGC CTTATACAACATTATATGTACTATGATAATGCATGCAATAATACATTTTTATTTGATATATAATT AATTATTATATATATATATATATATATATATATATAAGTAATATATTATTTAATGTCTTACATTA TGACAACTTAAATGTTGTGTGAAAAATGTAATGTATGAAAATTGT Right flanking sequence: Indices 470161 -- 470660 ATAAAAAATTTTTATTAATAAATTATAATGTGTATATATATGTTATAAAAATGAATAAATGAGGA AATATTTAAGAAATCTAATTAATTGTATTTGAAAATGAACCATGCAAATATATTTCAAATATATA AACGAATTTATTAATACGCGTATTTATATTATTATAGTACTACCTGCTATTAATCATTAGTTATA AAGACCTATATAAATATATAAACGACATAAATATACCGATAAAATCGAAATTTTGTTTTAATATT TCACATGTGATAAAAGAAAAAAATATGAATAATAAGTAATTTTATTTATTTATATATTTATAATT TTTTTATTATTTTATTTAATTGAATTAAAAACATACATGCATATATATATATATATATATATATA TATATATATGTATATGTTGAATTACATATCGAATTAAAAAAAATGTATTCTTAACTCTTTCTATG TTATAGTATATTAATATAATTTCAATATGTTTTAATCGTGATAAA Found at i:471068 original size:7 final size:8 Alignment explanation
Indices: 471047--471067 Score: 42 Period size: 8 Copynumber: 2.6 Consensus size: 8 471037 TAATACTGAA 471047 AAAAAATC 1 AAAAAATC 471055 AAAAAATC 1 AAAAAATC 471063 AAAAA 1 AAAAA 471068 TAGAGGCATA Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 13 1.00 ACGTcount: A:0.81, C:0.10, G:0.00, T:0.10 Consensus pattern (8 bp): AAAAAATC Left flanking sequence: Indices 470547 -- 471046 TATATATATATATGTATATGTTGAATTACATATCGAATTAAAAAAAATGTATTCTTAACTCTTTC TATGTTATAGTATATTAATATAATTTCAATATGTTTTAATCGTGATAAATCATTTATAATAATAA GTGAACATATGTCTTCATATTGTTTATTATATTATATTAAATAATTTTTTTTTTTTGTTGATATG TAGAATTGTTTTATATTTTTTGTTTGCATAAAAGAATTAAGAAATTAAAAAGGAATAAAATTAAA TAAAAATAAGAAATTATTTATATTTATAAAAATAACAAGAAACATTTTTGTATATTATATTAATT TATTTTAATAGGAAACTATATAATATTGTATTATAAATAAATTTTATATGGGATTATATATTTTT TTTTTCGCTCGGATTATTAAAATTAATAACAAAATAAAACACATATATAAATACACATTTAAATA ATATATTATAAAATATCACAAATAAATAAATAAATTAATACTGAA Right flanking sequence: Indices 471068 -- 471567 TAGAGGCATATATATATTAGAAAAAGAGAATTATATATATATATATATATGTATTACGAAAAAAT GTACAGAAAAAGAAACAAAATAACCATAATATACATAATTATTAATCAAATATAGATACAATTAT TATACTAAAAAATAAAATACATATATATATATAAATATTATGAAAAAAATTACACAATAAGAAAG AAAAAAAAAAATCATGTTGCAAATTATTAAAAATATAATAATATGATTATAAACAAAAACATATT TTTTACAAATATACCAAAAAGAAAAAATAAATAAATAAAATAAAAACATATACAAATAATACAAA ATATATATGACACACATAAAAAAAAGTATATTAATTTTAGATATTCCATATATCTGATATAGGAT ATTCCTCTTCGAAAATCTCCTTTTTATTATTAACAATATTCATTTCAATGTGTACTTTATTAGGT ACATCCATATTATTACTATTCACATTATTATGATCAACATATATA Found at i:477992 original size:7 final size:7 Alignment explanation
Indices: 477980--477994 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 477970 TATCAACATA 477980 TTTTTTC 1 TTTTTTC 477987 TTTTTTC 1 TTTTTTC 477994 T 1 T 477995 ACAAAAGTCT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87 Consensus pattern (7 bp): TTTTTTC Left flanking sequence: Indices 477480 -- 477979 TAAAATGTTCCTTCATTTTCATTATTAGTACCACTAGTGTCACTAGTACCACCGTTTTCGCCAAT GGTAGTGGTAGTACCAACCGTTTCAAAATGAATTGTTCCTCCGTCATTGTCTTTAACAGCTGTGC ATGCTTTTTCATTATTTAATAATCCCAAAAAAGCATTAACATCACTATAGTTACCTTTAAGTTCG TCATAAAATTTTTTTTCATATCCTTCATACTTAGTTGTACCACCTGCATCCCGTTTTTGCCTACC ACCACCATCTGATATTTCTGTTTTGTATTTTTTTACTTGTTTGTCAAATTGTTTTCGTTGGTTTT CTATCCACTCAACGTAAGGATTACATGCAAACAAACATTTAGTACATTGATTACCCATACGGTAC TTACCTCGTGCTCTAACAGTTTTTGTGCAATCGTAGCCATTACGACTACAATATCGTTGGTTACC ACTTTTATCTTGTTCACGACAATATGTTTTAACTATATCAACATA Right flanking sequence: Indices 477995 -- 478494 ACAAAAGTCTTCTGCCCATTCCTCGAACCACCGAAGATACTGCGGCACATAGTCAAAATACGTAG GGACAATAGTTACGTCGCCACCTGCCTTGATGGCCTTTCCGCCACTTGTCTTGGGACACCTGCAT TTTTCATGAGCTTGAGAACAATCTCCATTAAGATCACTGCACGTTGCATGAAAATATGTACCGTG CGCATCACATGTTAATGCTTCCCATACCGTTTCTCTATTCGCCGTCCACCAATCTTCTCGTAATT TTAAAAAATTTGGATCTTTTTCTTTTGTGTAGTAATTTTTTGCTTTTAGAGGCAATTTCTCATCT ATATTCTGGAAAAATTTTTTTAAATTTTGTTCTAATTTTTCTTTTTGTGCTTTCTCTTTTCTATT ATATCCAAGATACAGATCTTTTCCTCGTATAATGTCACCTATATCTGCAAAACTTCGTGCCAACT CAGTACATAATTGGGAAGGAGAATCAGTATAAGTTAGGTTAAGTT Found at i:481394 original size:10 final size:10 Alignment explanation
Indices: 481379--481398 Score: 40 Period size: 10 Copynumber: 2.0 Consensus size: 10 481369 CCAACATAAA 481379 TATGATATAT 1 TATGATATAT 481389 TATGATATAT 1 TATGATATAT 481399 GAGATGGTAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 10 1.00 ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50 Consensus pattern (10 bp): TATGATATAT Left flanking sequence: Indices 480879 -- 481378 AATAGTAATATTTCTATATATATTTGTAATATAGAGATAACTAAAAAAAAAAAAAAAATAATAAA ATAAAATAAAATAAATATAATAAATAAAATTGAAAAAAAAGGATGTTATAATAACTATAGATATT ATTATGTTTTTATTTTATTTATATATATATTGTATATTTACTATTCTTATGAAAGGTATATTATT AATTATGTATTTTGTATATATATATCCACATAAATACATGAACCTCATCCCTAAAACATATCTAT ATGAACATAGTTATATATACCAAAAATCAGATAGACTTATATGCATGCATTCACATACCAACATA TACCGAACAATATTTATAACTATATACGCTTGGTTACACTCAAAATATATATATAAATAGAGAAA TACAAGTACATACTAAACCAATCTAACATACATAAATACACAAATAATTATATATATCGATATTT TTCGTCCAATCTACATAAAATCCATGCATAATGCACCAACATAAA Right flanking sequence: Indices 481399 -- 481898 GAGATGGTAACATATGTTATTCTATATATATATATATAATAATTTCTAATTATATATATTCCTTT TATGCATTTATTTTATGACTTTGAATTTCCATTTCTTAATTTATATAATTTATATATATATATAT ATTTATTTCTCAATCGTAATGTACAAAAAAAAGGGAAAAGATTTTGTATGAAACCTTGAAAACAG TATTATAAAAAAGGATGAAATCTTCTTAAATCATATAATAAATGAATTTGGTCTAGTTTGTCTAT ACTTTTTACAAAAATTGTATGAGAAAATTCGAGTCCATATTTTATAAGATATATATATTAAGAAT TATAATTAAAAATAAATATATATTTATATATATATATATTTTTTGATCATGTATTAAAATTGTTT CATAATATTTATTAGGTTCCGAATAATACACCAAATATATTATTTAATCTTATGATATATATCTG AATATATTTGTTTATTTGTAATTTGTTTAAGTATAGCAAACAATT Found at i:482232 original size:9 final size:9 Alignment explanation
Indices: 482218--482236 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 482208 AACTTTTTTT 482218 TATAATAAA 1 TATAATAAA 482227 TATAATAAA 1 TATAATAAA 482236 T 1 T 482237 TTCCAGATGA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37 Consensus pattern (9 bp): TATAATAAA Left flanking sequence: Indices 481718 -- 482217 AAGAATTATAATTAAAAATAAATATATATTTATATATATATATATTTTTTGATCATGTATTAAAA TTGTTTCATAATATTTATTAGGTTCCGAATAATACACCAAATATATTATTTAATCTTATGATATA TATCTGAATATATTTGTTTATTTGTAATTTGTTTAAGTATAGCAAACAATTTCATGTCTATACAT TTGTTATAATATATATATGGCTTATATATTTATATATTTTATATTGCAAGAAAAAATATATAAAT GTATGAATCTTTAATATATTCATTATTTTTTTATTATGAAGGTTTACTTGATAGTAAATTTTATA CTTAAATATATATATTATTACATTAAACATAATATAAAAAAATAATTATATATATATATATATAT GTGAATACAAAAGAGAAAACTATAAATTTAATATATATATATGTTATAGTTTATTTATATAAAAT ATACATTCCATTAATATTTAAAAAATATATTTAAAAACTTTTTTT Right flanking sequence: Indices 482237 -- 482736 TTCCAGATGATAATATAACATATTTTGTGTTTAAGAAAATATATAAAATAATATAAAATATATGA ATATATTAAAAAAACAAAAGCAAAGAATATAACATTATATATTTCAAATTAATATATATACATAA CTTTTTTTATATATATAATTTTATTTTCCAAATAAATTTAAACATCAACATGAATATATATATAT ATATATATATATAAATATATAACATATATTTTTCTTTTCATTAAATTTAAATATAAAATTCGTAC TTTTATATTCAAAATATTTATATTTCAATTATGATATATTTTATATATGTACATACAGTGGTAAA TATATATATATATATATATATATATATATATATATTATGTGCATAAATTCCATTTTTAATAATAC TTTGATGTGAGTACTATTATTAAGCTGCCTCAGTAGCCCAGTCGTTAGGTATGTAACCTTTCCTT GTGAGAACGTTGGTTCGACTCCGCGTGCCGACAATTTCATAAGAA Found at i:484381 original size:7 final size:7 Alignment explanation
Indices: 484369--484383 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 484359 ATTAATTTGT 484369 TTTAATA 1 TTTAATA 484376 TTTAATA 1 TTTAATA 484383 T 1 T 484384 ATCAGAAATT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60 Consensus pattern (7 bp): TTTAATA Left flanking sequence: Indices 483869 -- 484368 GGTTATATGATTATAAGAAAATAATGTGTACTAAATAATAAATGCATTTTATATAGTTATATGTT AAATATAGAAATCAATTATTTATTATAATTATAATCATATTAGTATGGTGCAATATATATATAAA TATATTATAGTTGTGATTATTATATTGTACAATAAGTATTAAAGAAATATACCATAAAATGTAAA ACAATTGATTATATCATTTTTATTATTTCTGTAATATATTTATATATAATATATCATAAATTATA ATTTTACATTAAAAAAGTTATATTACACACTTTATTGGTTAACTTACTTATTATGTATGTCTATA ATATTTTATTTTATTTTTTTTTTTTTGCTTTAACTATTTTATTAAATAATTATGTTTTTATATAA TTAATGTTCAACATAATGTCATGTGCATATGCATGATGATTAATATAAATTTGTTCTTCAAATAG GAATTTGTTAATATAATATAAAATATTACCACACCATTAATTTGT Right flanking sequence: Indices 484384 -- 484883 ATCAGAAATTTTTACTTGACCTATATTATAAAATAACATACGTTTTACATTTTTGTGTCTATATT TTAATACTACCCAAATATATATATATGTATGTTTCTTTAATATTTATAATGATATATAATTTATA TTTAGAAAGAAAACAGTTATTTTTATAGAATATTTAAAAGAACATGAATTATATATAAATTTTAA TCTTTATATGTAAGTGTAAGTACACTTTTATTATATTTATTTATATTTAACACAAATTAAAAATA AATTACATAATAAATTTATCATTCTTCATTTCTATAATTTAAATTTAATATTATTACTTTGTTTA ATTTAAATTTATTCTTATAATATATAATATAAACAAAAATTGTAGTTATATGTCTATATGATATA TCTATAACGGTTAAAATAAACGTTCTCATAAATTTTTTTTTTTTTTTGTGTATATGTTTAATTAG TACATATAAAGTAACAATATAAATTTTAATTAAGTCCAAATTAAA Found at i:484736 original size:7 final size:7 Alignment explanation
Indices: 484724--484739 Score: 32 Period size: 7 Copynumber: 2.3 Consensus size: 7 484714 AATTTATTCT 484724 TATAATA 1 TATAATA 484731 TATAATA 1 TATAATA 484738 TA 1 TA 484740 AACAAAAATT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 9 1.00 ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44 Consensus pattern (7 bp): TATAATA Left flanking sequence: Indices 484224 -- 484723 TAACTATTTTATTAAATAATTATGTTTTTATATAATTAATGTTCAACATAATGTCATGTGCATAT GCATGATGATTAATATAAATTTGTTCTTCAAATAGGAATTTGTTAATATAATATAAAATATTACC ACACCATTAATTTGTTTTAATATTTAATATATCAGAAATTTTTACTTGACCTATATTATAAAATA ACATACGTTTTACATTTTTGTGTCTATATTTTAATACTACCCAAATATATATATATGTATGTTTC TTTAATATTTATAATGATATATAATTTATATTTAGAAAGAAAACAGTTATTTTTATAGAATATTT AAAAGAACATGAATTATATATAAATTTTAATCTTTATATGTAAGTGTAAGTACACTTTTATTATA TTTATTTATATTTAACACAAATTAAAAATAAATTACATAATAAATTTATCATTCTTCATTTCTAT AATTTAAATTTAATATTATTACTTTGTTTAATTTAAATTTATTCT Right flanking sequence: Indices 484740 -- 485239 AACAAAAATTGTAGTTATATGTCTATATGATATATCTATAACGGTTAAAATAAACGTTCTCATAA ATTTTTTTTTTTTTTTGTGTATATGTTTAATTAGTACATATAAAGTAACAATATAAATTTTAATT AAGTCCAAATTAAAAATACAGTAAATATAATATAATATAATATGATTTATTATATATATATATAT ATATATATTTTTAATACATATATATATTAGTTTTTTTTTTATAATAGATTTCTATAGAAAAAAAT TAGAAAAATATTAAAATATAACATATAAGAATCAAATAAAAAACCTTAAATAAAACCATAAAAAA TCAAAACAAAATAATAATTATAATAATAACAATATTTTGTTTCTTATTTATTATTAAAATATCTA GAACATGTACTACATATATATCTGTTTTTGGATAGATAAGCGACAAGCATGTATCTGTATTTTTA AAGAAATATTAATATATGTATTTTTTTTATTTTTTTCACTATGAT Found at i:485227 original size:9 final size:9 Alignment explanation
Indices: 485213--485230 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 485203 TTAATATATG 485213 TATTTTTTT 1 TATTTTTTT 485222 TATTTTTTT 1 TATTTTTTT 485231 CACTATGATA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89 Consensus pattern (9 bp): TATTTTTTT Left flanking sequence: Indices 484713 -- 485212 AAATTTATTCTTATAATATATAATATAAACAAAAATTGTAGTTATATGTCTATATGATATATCTA TAACGGTTAAAATAAACGTTCTCATAAATTTTTTTTTTTTTTTGTGTATATGTTTAATTAGTACA TATAAAGTAACAATATAAATTTTAATTAAGTCCAAATTAAAAATACAGTAAATATAATATAATAT AATATGATTTATTATATATATATATATATATATATTTTTAATACATATATATATTAGTTTTTTTT TTATAATAGATTTCTATAGAAAAAAATTAGAAAAATATTAAAATATAACATATAAGAATCAAATA AAAAACCTTAAATAAAACCATAAAAAATCAAAACAAAATAATAATTATAATAATAACAATATTTT GTTTCTTATTTATTATTAAAATATCTAGAACATGTACTACATATATATCTGTTTTTGGATAGATA AGCGACAAGCATGTATCTGTATTTTTAAAGAAATATTAATATATG Right flanking sequence: Indices 485231 -- 485730 CACTATGATAAATATTTTTCTAACATACATATTTTAATATCACAAATAATTTTATAAAAAATATA ATTTTTAATACATATGTTTGTTTTGATAAGTATTTTTATATTGTATGTATTCTTTTATTTATATA TATATATATATTTTTAATATATGATCTACATATGTATGTTTGTTTGTCTAATTGTTTCGATAGGT ACTCATTTATATATAAATATAATCAATATGTATTTTTATAAATAGATTCGATCTATCGATTATTC TTCTTGTTTTGTTTTAAATATCATAAAAGGGAAAAAAAAAAAAAAGAACAATATTAAATCTTAAT ATTAATACTATCACAAAATAAAACTGATAGTTATACTACTATTAATACTTCTAATAATATTAATA GTAGTATTAATAACAAATAATAAAATATTATTTTATTATATTATATCTTTTTTTTTAATATTTTA TATTTTTAATCTAAATAATATTAACTACTATGGTCATTAAAATAT Found at i:487087 original size:9 final size:9 Alignment explanation
Indices: 487073--487091 Score: 38 Period size: 9 Copynumber: 2.1 Consensus size: 9 487063 TATTTGGTTC 487073 TGTATTTTG 1 TGTATTTTG 487082 TGTATTTTG 1 TGTATTTTG 487091 T 1 T 487092 AACATATTAG Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 10 1.00 ACGTcount: A:0.11, C:0.00, G:0.21, T:0.68 Consensus pattern (9 bp): TGTATTTTG Left flanking sequence: Indices 486573 -- 487072 AATTCTTTCAATTTGGGTAACCGTTCGTGATTATTTTTCCACTTTTCGCACATATCTCTATGTCT ATCTAACCATTTATGGAACAAATTTATTTGATTGAGTATAGGATCACTATTTGTATTTTTTGCAA CACTATGTGTACTCGTATGTTTCACATGATTTGTCCCGAATAATTCATTTTCTTTTCGTTTGAGC ATTTCATCATATATATCAATATGATTACCACTTAGTGCGTCGTTGATTAGGTCGATACCACTATA TAAATCATTTTTATCATTATATGGACTATGGTTGTTACTTGTTAGACTATCCATACTATTTGTTG AATCACTAATGTTTATTGGATTATTCCCACTATTAAACATATCATAATTGTATTCTTCTCCACTA AATAAATTTCTATCATGAATGGACATAATAAAAGGTTTTTCTTCCACATTATGATGTGACGTGGT AGGATGGGTATTATTATCAACATTATCACGTAAAATATTTGGTTC Right flanking sequence: Indices 487092 -- 487591 AACATATTAGATATAAAATCTTTTTTCAATGTATTCCACTCATTATCTGTAATTTTACTACTAGG TATACCATCACTTTGTATATCATTTTGTGTATCACTAGGTGTGTTTTTACCACTAGCTGTTGTGT TGTTACCACTAGGTTCAAGTACGACTTCAATCAATGTTTTATATTTAGGACTATCAGGTACATAT ATATCATTAATATCCATCTCTTCATACTCACTTTCGGAAGAGGTTATATCACTATAATGATCGGT GTAACCACTATCTGTTCCACTATCTCCTTCAAGGTAAATGTACCGTTTGCCTCTGTATTTACCAC TAGTATAAGGTATATATCTATTGGGTGAAAGTTTTGTCGGTATATCATAATCACTTTTGGGTATT TGCAGTATTTGGAATAAATTTCCAACAGATGATTTGGTTTTTTTCTAAAAAAATGAACATATATG TGTATGTATATATGTATTTAGGTATATATTTATGTATGTATGTAT Found at i:491461 original size:7 final size:7 Alignment explanation
Indices: 491449--491463 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 491439 CTCCGCCGGG 491449 TGTTTTT 1 TGTTTTT 491456 TGTTTTT 1 TGTTTTT 491463 T 1 T 491464 TTGTTGGTTG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87 Consensus pattern (7 bp): TGTTTTT Left flanking sequence: Indices 490949 -- 491448 CCACGTTTGGAACGTGAGGGACGTTCACCGTTACCACTACTTGTGGCTGTTTTGTCACCACTTGG TATACATTTCCAACCGTAGTTTTTACCAGTAACATATTTGAGGGTACAAGCGTCGGAAAAATCGT TTGGGTTCTGAAAGAGTTTAGACACTATATCACATGGCTTCACCCCGTCTTCTTTTGTTATCTGT GTGGTCTCTCCCGTCCCGTCTTCTGTGGTTGCCTCTGCCGGTTGTGTCTCTTTTTGTGGTATCTC CCCCCCTCCGTCCGTGCCTTCCTCCGTCTCCTCGGCTTCCTCCGTCTCCTTCACCTCGTCGGGGT GTTCTTTGAATTTGGGTTGTATGTGTTTTTCGTCCTCGAATTTGATACTACGGATCTTGTTGGGG TCGTCGTCTTCGTCGTCGTCGTGTTCCTCGTGGTGGTTGGTGATAGGTGGTGGTTGTGGTCGTGC TCCGTCGTGGGAAGTGTCGGAGCGGGCGTCATCACCTCCGCCGGG Right flanking sequence: Indices 491464 -- 491963 TTGTTGGTTGCATTTTGCGTCGTTGTGGATGCCTGTACATTTATTGGCGTCCTCTTCTTCGTGCT GTAAGAACTTGGTTATTGAATTATCATGTTCTTTAACACTTAACATATTTGGTTTATTTTTTTCA ATTATATCTTCCATTTTTTGTACGGCTTCATCTTTTGGATGAGCTTCTTGAATCATTGGCAAATA ATAGATTTGCAAATTCCCTTCAAGAATCCCATAAGGACCAGATAACTCAAAATCTTCTTTCTCAT AGTGTTGTTCAATTTGTTTCCATTCTTGTTGTTTTTGTGCAACCCAGTTTTTAAAACATTCACAG TTTTTTTTACAGCCACTTATACATTTGGATTTATCATCTTTTTTTATACACCTATCAAGTTCTTT ACTCCATAATATAGAATCTTTTAACATTTCATTTATCCAATGCCAAAAAAGTGAGTTAAATGACT CAATTTCCTGATTTTTTGTATTTTTATTGTCATTTTGTAGTATGC i:491465 original size:9 final size:9 Alignment explanation
Indices: 491451--491468 Score: 36 Period size: 9 Copynumber: 2.0 Consensus size: 9 491441 CCGCCGGGTG 491451 TTTTTTGTT 1 TTTTTTGTT 491460 TTTTTTGTT 1 TTTTTTGTT 491469 GGTTGCATTT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 9 9 1.00 ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89 Consensus pattern (9 bp): TTTTTTGTT Left flanking sequence: Indices 490951 -- 491450 ACGTTTGGAACGTGAGGGACGTTCACCGTTACCACTACTTGTGGCTGTTTTGTCACCACTTGGTA TACATTTCCAACCGTAGTTTTTACCAGTAACATATTTGAGGGTACAAGCGTCGGAAAAATCGTTT GGGTTCTGAAAGAGTTTAGACACTATATCACATGGCTTCACCCCGTCTTCTTTTGTTATCTGTGT GGTCTCTCCCGTCCCGTCTTCTGTGGTTGCCTCTGCCGGTTGTGTCTCTTTTTGTGGTATCTCCC CCCCTCCGTCCGTGCCTTCCTCCGTCTCCTCGGCTTCCTCCGTCTCCTTCACCTCGTCGGGGTGT TCTTTGAATTTGGGTTGTATGTGTTTTTCGTCCTCGAATTTGATACTACGGATCTTGTTGGGGTC GTCGTCTTCGTCGTCGTCGTGTTCCTCGTGGTGGTTGGTGATAGGTGGTGGTTGTGGTCGTGCTC CGTCGTGGGAAGTGTCGGAGCGGGCGTCATCACCTCCGCCGGGTG Right flanking sequence: Indices 491469 -- 491968 GGTTGCATTTTGCGTCGTTGTGGATGCCTGTACATTTATTGGCGTCCTCTTCTTCGTGCTGTAAG AACTTGGTTATTGAATTATCATGTTCTTTAACACTTAACATATTTGGTTTATTTTTTTCAATTAT ATCTTCCATTTTTTGTACGGCTTCATCTTTTGGATGAGCTTCTTGAATCATTGGCAAATAATAGA TTTGCAAATTCCCTTCAAGAATCCCATAAGGACCAGATAACTCAAAATCTTCTTTCTCATAGTGT TGTTCAATTTGTTTCCATTCTTGTTGTTTTTGTGCAACCCAGTTTTTAAAACATTCACAGTTTTT TTTACAGCCACTTATACATTTGGATTTATCATCTTTTTTTATACACCTATCAAGTTCTTTACTCC ATAATATAGAATCTTTTAACATTTCATTTATCCAATGCCAAAAAAGTGAGTTAAATGACTCAATT TCCTGATTTTTTGTATTTTTATTGTCATTTTGTAGTATGCAATTA Found at i:492471 original size:8 final size:8 Alignment explanation
Indices: 492460--492476 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 492450 CATTTTCATA 492460 TTTGTTTT 1 TTTGTTTT 492468 TTTGTTTT 1 TTTGTTTT 492476 T 1 T 492477 CAAATTCTTG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88 Consensus pattern (8 bp): TTTGTTTT Left flanking sequence: Indices 491960 -- 492459 ATGCAATTATCACTTTTATCATTATCATCATAATGACATTTCCAATCATCTTTTTTTATCTTTTC GCCATTTCTGCAGAAACTTCCTAATTTTTCTAGAATTTTTGTCTTTCCTCTATCAGTGGAAAGTA TTGATATATCAGTAGTATCTTCATTATTAAACTTTATTATTTCTTTATTATTACAGTCTTCATCA CCTTTAGCTATCCATCTTCCATTTACTTTTTGTTCTTCAATTCCACACCATGGACATGCTTGACA ATATTTTGTACTAGAAAATATGTCAATACCTTCAGGATTTTTGAAACTAATATCAATTGTTCTTG GTTCATCATAAGGTTGTTGTTTACATGCTGTTTCTTTACTTAATAAATCTAAAAATTTATCAACA TCTCTATATTCACGTTTTAATATATCATAAAATTGTTCAATATATCCATCATACGTATCACTACC TATACTTCGTTTTCTCCTACTTTTACCTAATATTTCATTTTCATA Right flanking sequence: Indices 492477 -- 492976 CAAATTCTTGTTTTTGGTTCTTTATCCAGGGTCCAAAAGGAATACATACACTAGAACACTTAATA CATTCTTGGTCATGCTTGTACTTGTTTTTTCCTTTAGCTGTATTCTTGCAATCATAACCATTAAG ATCACAATATCGGTTCTCACCGTTTTCATCTTCTTCACGACAATTTTTTATAGCATCTGTTAATT GTTTTTTTCGTTTACGGCAAAAATCTTCGGCCCATTCCTCGAACCAGCGAAGATACTGTGGCACG TAGTCAAAATATGTGGGAACATCATGAGTGGTACATCGGCATTTATTAGGAGTCGAAGATTTTCC TCCATTACATGCTGTTTTTCGAAAATATTGATAACCCTCAGCGCCGCATGTTATCGCGTACCATA CTTGTTGTCTATTAGCATACCACCAATCTTCTCGTAATTTATAAAAATTTGCGTGTGGATCGCTA TAATGTTTTTGTGCTGGCTTCTTCAAATTTTTATATATATTTTGG Found at i:494644 original size:8 final size:8 Alignment explanation
Indices: 494631--494647 Score: 34 Period size: 8 Copynumber: 2.1 Consensus size: 8 494621 GTATTCCTCG 494631 AATATAAA 1 AATATAAA 494639 AATATAAA 1 AATATAAA 494647 A 1 A 494648 GAGCATACGT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 9 1.00 ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24 Consensus pattern (8 bp): AATATAAA Left flanking sequence: Indices 494131 -- 494630 AACATACATGTTTATATATTTAATTATAAACCTTAATATATTTTTTTTTTTTTTCGCCTTATTTT AATTAATTATATATATATTTTAGAGATAACAACAGAGGCAAATATGTTCTTCCGTTTCTCTCTAT CCATACTATCTATCATATATCTACATAAAAAAAATATATATGCATATATATATATATATTTATAT TTTTCATTATATTAAAAATAATACATTATAAATATAATATTTTATATTCTTATTTTTTTTTATAT TATAATTTATAATATATTATATAATATATGACATATCCTGTAGTACAACGTATATATAAGATCGA GAACAAAAGGGTATCGAAATAAATAAAAAAAAAAGAAAATTTTAATAACAAAGAGATAAAAAAAA ATTATTATATTATTAATTAAAATAAATTTTAAAATTATTTTTATTTAACGTTTTATATATTACTT AATACTAACTTAAATGTATACATATAAAAGAATACGTATTCCTCG Right flanking sequence: Indices 494648 -- 495147 GAGCATACGTATTCCTCGAACATAAACAAATATATATAAGAGAATACGTATTCCTCCAACGTAAA TATATATAAGAGCATCCATATTCTTCAGGAAAAAAAAAAAAAAAAAGAAAAAATAAAAATAAAAA TAAATAAATAAATATATAATATCAAATATATATATACATATTATACCAAAAAAAAAAATAAAAAA AAAACATATAATTTAGTACATGAAAAATTATATACATATAATATAAGCATGTACCATTCAAATAT ACGAAATAATTATAACTAAAACAAAAAATACAACATATTGCACAAATAAAAAATTTAATATAATG CACACATAAAAAAAAAAAAAAAAAAATTCAAACAAATATACATTCATACGTATATATTATATATC CCACACATCTGCTATAGGATATTTCTCTTTCACCAATTTAGTATTTACATCCATTTCAATTTGTA CTTTACTAGGTACATCCATAGCATTACTATCCACAGTTGATGCAT Found at i:495035 original size:7 final size:7 Alignment explanation
Indices: 495023--495036 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 495013 CATTCATACG 495023 TATATAT 1 TATATAT 495030 TATATAT 1 TATATAT 495037 CCCACACATC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57 Consensus pattern (7 bp): TATATAT Left flanking sequence: Indices 494523 -- 495022 TATTATATTATTAATTAAAATAAATTTTAAAATTATTTTTATTTAACGTTTTATATATTACTTAA TACTAACTTAAATGTATACATATAAAAGAATACGTATTCCTCGAATATAAAAATATAAAAGAGCA TACGTATTCCTCGAACATAAACAAATATATATAAGAGAATACGTATTCCTCCAACGTAAATATAT ATAAGAGCATCCATATTCTTCAGGAAAAAAAAAAAAAAAAAGAAAAAATAAAAATAAAAATAAAT AAATAAATATATAATATCAAATATATATATACATATTATACCAAAAAAAAAAATAAAAAAAAAAC ATATAATTTAGTACATGAAAAATTATATACATATAATATAAGCATGTACCATTCAAATATACGAA ATAATTATAACTAAAACAAAAAATACAACATATTGCACAAATAAAAAATTTAATATAATGCACAC ATAAAAAAAAAAAAAAAAAAATTCAAACAAATATACATTCATACG Right flanking sequence: Indices 495037 -- 495536 CCCACACATCTGCTATAGGATATTTCTCTTTCACCAATTTAGTATTTACATCCATTTCAATTTGT ACTTTACTAGGTACATCCATAGCATTACTATCCACAGTTGATGCATCATGATCATTTACATCATA ATAAATATCATCTTGCACATCATAATAAGGTTCATTATATTTTTCCAGATCCTCCAAGATAGTAT CCATATTAGTAAATTCCTTCATTCGTTTTTCATGATCCATATCTATCTGAATAGAAACATCAGTA TTCAACGTTTTGTTACTATCACTAGGGTGAGTGTTACCACTATGTGTCTCATTTTCCCACTCTTC TTTTAATTTATCTAATAGTTCCTCTTTATTACTCCACTGTTCGCACATATCTCTATGTCTATCTA ACCATGTATGGAATAGTTCCAGTTGGTTGTGGATGGGGTCACTATTTGTTAGTTTGGCAACACTA TGTATACTTGTTTGTTTCACATGATTTGTACCAAATAATTCATTT Found at i:501450 original size:7 final size:7 Alignment explanation
Indices: 501438--501452 Score: 30 Period size: 7 Copynumber: 2.1 Consensus size: 7 501428 TATCAACATA 501438 TTTTTTC 1 TTTTTTC 501445 TTTTTTC 1 TTTTTTC 501452 T 1 T 501453 ACAAAAGTCT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 8 1.00 ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87 Consensus pattern (7 bp): TTTTTTC Left flanking sequence: Indices 500938 -- 501437 TCACCACTAGCAGCAACAACATCGTTACCACCACCAGGAACACTAGCACTACTACTTTTAACGTT TTTGAAATTAATTTTTCCTCCTTGTGTGTCTTGAACTTTTTTGCATACATCTTCATCACTTAATT TTTCCAAAAAATTATTAACGTCACCATATCCATGATTTTTAAGTTCGCCATAAAATTTTTTAATA TATCCATCATAATTAGTTGTACCACCTGCATCCCGTTTTTTCCTACTACTACTACGTGGTGCTCC CTCTGTATATATTTTTATTTCTTTATCATATATTTTTTTTTGTTTGTCAAATTGTTCTTTTTGTT TTTCTATCCAATTTTCATAAGGATAACATGCAAAAAAACATTTTGTACATTGATTACCCATACGG TACTTACCAACTGCTAGTTTAGTTTTCGTGCAATCGTATCCATTCAAACTACAATATTTTTCTTT ACCATTTTCTCCCTCGCGGCAAAATTTTTTAACTATATCAACATA Right flanking sequence: Indices 501453 -- 501952 ACAAAAGTCTTCGGCCCATTCCTCGAACCAGCGAAGATACTGCGGCACATAATCAAAATATGTGG GGACCTGGTTGTTACCATTGGGACATCGGCATTTGTCATTAGCTTGGGCTCCACCTCGTTCGTCA CTACATGTTTGTCGAAAATATGAAGAATTTTTTAGGTCCTCGCTACATGTCATGGCTTCCCAGAT TGTGGCGCGATTCGCAGTCCACCAATCTTCTCTTAATTGATAAAAATTTCCAGTTGCATCATTGT AGCGAGTTTGTGCTTCTGAATCCAATTTTTCATGTATTTTCTTGAAAATATATTTCAATTTATTT TGTAATTGTTCTTTTTCTTTTCGATCTTTTTGATTATAACCTATAAAAAGATCTTTTCCTCTGAC AATATCTCCTATATCTGCAAAACTACGTGCCAACATAGTACACATTTCAGAAGGAGAATCATCAT ATTTTTCTTGATATTGTGGATAATGAAGTGTTATTGATGCCCCTT Found at i:503259 original size:8 final size:8 Alignment explanation
Indices: 503246--503266 Score: 42 Period size: 8 Copynumber: 2.6 Consensus size: 8 503236 CTATTTACTT 503246 TATAAAAA 1 TATAAAAA 503254 TATAAAAA 1 TATAAAAA 503262 TATAA 1 TATAA 503267 CAAGCATAAT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 13 1.00 ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29 Consensus pattern (8 bp): TATAAAAA Left flanking sequence: Indices 502746 -- 503245 GTATATAAAGGTGTTTAACGATTATATATATATTAAATATATATATGATAATATTTAATATATAC AATATTATAATTATATATGTTACGATGATCTTATAATATGATTATTATAACACATTATTATTAAT TATATTATTATTATAGTATTAATAATATAATTATATATCTTATGATAATCTTATAATATTCTATA ATGATGTTTTTTTCGATCTGTATAATGTTTAATTCATTTACTATAGTCTATAATTATTGTTTATT ATACAGATAAGTTATATTAGTTCTAATGTTATAATATATATATATATATATATTAAAAAATAATA TTTTACATGTACATAATAATTATTGGATTTATATATTTTTAAAAAATATTTTAATAAGTTTTTAA AAAAAATTTAACCTTCGATCAAAATATATATAATCAGAAAATATTATATTTCATATATTATTTTA TTTATTTAATTAATTATATATATTATTTGTATGTTCTATTTACTT Right flanking sequence: Indices 503267 -- 503766 CAAGCATAATCATACAATTTATATAAATATATACAACTTCTTTATATATTAATTTGTAAATAAAA TATTTAAGTATATCTTATCACTTTATTTTATTTATTGTTTTTATTTATTATATATATATATATTA GAGATAAAAGAATAAAGAAAGATATTATTGCGTTTCTATCTATCTATATTATCTATCATATTTCT ATATAAATAAATATCTAAAGAATCTACATATATTTATAAATCACAAAAATATATAAATATGTTTC TGTATAATATTCTATAATATTAAAACTACTATATTATAAATATTATATTTTATTTTTTTTATAAT ATAATATATAACATATTATGTAATATATAATATAATATATTATATAATATCAAATTAGGTCGAAA TAAAATCATGAACAAAAAAGTATCGAAATAAAAATAAAATAAATAAATATATAAATAAATAATAA CGGGGAAAAAATATTATAATATTAATATAAATTATTATTGCATTT Found at i:504114 original size:7 final size:7 Alignment explanation
Indices: 504104--504117 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 504094 TACAAAATAC 504104 ATACATA 1 ATACATA 504111 ATACATA 1 ATACATA 504118 TGTGTTATTT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29 Consensus pattern (7 bp): ATACATA Left flanking sequence: Indices 503604 -- 504103 ATATTATGTAATATATAATATAATATATTATATAATATCAAATTAGGTCGAAATAAAATCATGAA CAAAAAAGTATCGAAATAAAAATAAAATAAATAAATATATAAATAAATAATAACGGGGAAAAAAT ATTATAATATTAATATAAATTATTATTGCATTTATTTTGATTTAGTGTTTTATGTATTACGTATT CCTAATATTATAAAAAAAATATGTATAATAATAATAATATAAAATAAAATACAATACAATACAAA TATATTACATGCATATAAATATATATATATGTTCAAATATATGTTATTAATAAAAGCTCCATTTA ATCGAAACTAATGAAAAATTGTGTTATATATTACATTTTTATAAATATATGTATACGACTATATG CATATTACTAATGACATTTAAACACATAATAAACTATATATATATATATATATATATATATATAA TAACATATGCATGCAAGTAATATAACCAAAAATAATACAAAATAC Right flanking sequence: Indices 504118 -- 504617 TGTGTTATTTACAACAATTCATATTCTAAATAATAATATTATTATATATTATTATAAAGAAAAAA CTCTATTTATGTCGGAAAAAAAAGCAAAGAAAACCAAACAAAAAATAAAGAGAAAGAAAAGGAGA ATGAAAAGGAAAGAGAAAATGAATACAATAGCCATCACAAATAAATAAATATTATTATGTTATGA TGGTCATTTTACATATTTGTATATAATTATTATATATATATATATATATTCCCCAAAAAAAAAAA CTTAAAAAATATCAAAAATCATAAGTATAACCAATTAAATATAGACATATCTATTTTCATATATA TGTATACATACTCATACAACAAACATATGTTCAACATACATATACCCTCAAACATAAACCGACGC AATATAACCATCAAACCAAATATATATATATATATATAATCATCAAAATATATGATGAAAAATTA TATTATATGATATATTTCTTGTTAAATATATTCGTGATATGATAT Found at i:504168 original size:10 final size:10 Alignment explanation
Indices: 504153--504173 Score: 42 Period size: 10 Copynumber: 2.1 Consensus size: 10 504143 CTAAATAATA 504153 ATATTATTAT 1 ATATTATTAT 504163 ATATTATTAT 1 ATATTATTAT 504173 A 1 A 504174 AAGAAAAAAC Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 10 11 1.00 ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57 Consensus pattern (10 bp): ATATTATTAT Left flanking sequence: Indices 503653 -- 504152 GAAATAAAATCATGAACAAAAAAGTATCGAAATAAAAATAAAATAAATAAATATATAAATAAATA ATAACGGGGAAAAAATATTATAATATTAATATAAATTATTATTGCATTTATTTTGATTTAGTGTT TTATGTATTACGTATTCCTAATATTATAAAAAAAATATGTATAATAATAATAATATAAAATAAAA TACAATACAATACAAATATATTACATGCATATAAATATATATATATGTTCAAATATATGTTATTA ATAAAAGCTCCATTTAATCGAAACTAATGAAAAATTGTGTTATATATTACATTTTTATAAATATA TGTATACGACTATATGCATATTACTAATGACATTTAAACACATAATAAACTATATATATATATAT ATATATATATATATAATAACATATGCATGCAAGTAATATAACCAAAAATAATACAAAATACATAC ATAATACATATGTGTTATTTACAACAATTCATATTCTAAATAATA Right flanking sequence: Indices 504174 -- 504673 AAGAAAAAACTCTATTTATGTCGGAAAAAAAAGCAAAGAAAACCAAACAAAAAATAAAGAGAAAG AAAAGGAGAATGAAAAGGAAAGAGAAAATGAATACAATAGCCATCACAAATAAATAAATATTATT ATGTTATGATGGTCATTTTACATATTTGTATATAATTATTATATATATATATATATATTCCCCAA AAAAAAAAACTTAAAAAATATCAAAAATCATAAGTATAACCAATTAAATATAGACATATCTATTT TCATATATATGTATACATACTCATACAACAAACATATGTTCAACATACATATACCCTCAAACATA AACCGACGCAATATAACCATCAAACCAAATATATATATATATATATAATCATCAAAATATATGAT GAAAAATTATATTATATGATATATTTCTTGTTAAATATATTCGTGATATGATATGTATATATGTA TTTCCTCATGTTGGTTTTATATTTAAATATATACAGACAATCATA Found at i:504627 original size:8 final size:8 Alignment explanation
Indices: 504614--504629 Score: 32 Period size: 8 Copynumber: 2.0 Consensus size: 8 504604 TCGTGATATG 504614 ATATGTAT 1 ATATGTAT 504622 ATATGTAT 1 ATATGTAT 504630 TTCCTCATGT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 8 8 1.00 ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50 Consensus pattern (8 bp): ATATGTAT Left flanking sequence: Indices 504114 -- 504613 CATATGTGTTATTTACAACAATTCATATTCTAAATAATAATATTATTATATATTATTATAAAGAA AAAACTCTATTTATGTCGGAAAAAAAAGCAAAGAAAACCAAACAAAAAATAAAGAGAAAGAAAAG GAGAATGAAAAGGAAAGAGAAAATGAATACAATAGCCATCACAAATAAATAAATATTATTATGTT ATGATGGTCATTTTACATATTTGTATATAATTATTATATATATATATATATATTCCCCAAAAAAA AAAACTTAAAAAATATCAAAAATCATAAGTATAACCAATTAAATATAGACATATCTATTTTCATA TATATGTATACATACTCATACAACAAACATATGTTCAACATACATATACCCTCAAACATAAACCG ACGCAATATAACCATCAAACCAAATATATATATATATATATAATCATCAAAATATATGATGAAAA ATTATATTATATGATATATTTCTTGTTAAATATATTCGTGATATG Right flanking sequence: Indices 504630 -- 505129 TTCCTCATGTTGGTTTTATATTTAAATATATACAGACAATCATAGAGAGAAAAGGAGAATATGGA ATCATATATTTTTTTTATATAAAATAAAAAATTATATATATAAAAATATAATATTAGATATTTCG AAATAATAGTATAATAATAATGATAATATAATATCAAATAAAGATCGAAGAACAAAAGAATGTAT ATATAAGTATATATAAATATAAGGAGTTACTATATTAAATATTTTTTATATTATGTTATATATAT ATATATATATATATTTTTTTTTGTTGTTGTTTTCGAATATTATTATTATATTTATATAATATATA TATATGCCTTATTTCGCGTTCTATAAATTTTTCTTTTTGGTATAAATAGAAAAGTATATATATAT ATTTTTTTTTATGGTATAACAATTATGACATTACCCTTCTACAAATATATACTACGAAATAATAT AATATTAAGACATTAGATATATGTGATATAATAAATATAACATTA Found at i:510187 original size:7 final size:7 Alignment explanation
Indices: 510177--510190 Score: 28 Period size: 7 Copynumber: 2.0 Consensus size: 7 510167 TATTATAATT 510177 TATATAA 1 TATATAA 510184 TATATAA 1 TATATAA 510191 ATGTGTTTAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 7 1.00 ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43 Consensus pattern (7 bp): TATATAA Left flanking sequence: Indices 509677 -- 510176 TTTTGTATTTAACATAATAGGATATATTACTATATGGATATATGTTTTCTCTTTTATTTTATATT TCTTTTATAAATGCACAATAAAAAATAAATATATATATATATATATATATATATATAATAGTTGA ATTTTATTGTAATATAAGAACAAAGTTATTATTTTTAATATTTTCTATGAATATTTTTTATAATT TATAGTAAAAAAAATAAATAAATAAGAAACGCATGCATATATAATATATAAATATACTTATGTAT AATAGTTGTATAATAGGATAATAAATTACATATAATAATACAAATATATATATATTTGTTTATTT ATTATTTGTTATTTATTATTATTTTTTTAATTTATTTTTTTTTATTTTTTATTTTAATTTTTTTT TTTTCTTTGGATTCCAATACTTTTTAATGTTTCCTATATAGGTAATAATATAGAATTATATGAGA TTTATTATTTTTAACATTTTAATAATAATTATTATTATTATAATT Right flanking sequence: Indices 510191 -- 510690 ATGTGTTTAAAAAAAAAAAAAAAAAATCAAAAAGATAAATAGTATGTTTTTATAATATTAGTACA TAATATACATAATTCATAAGAATATATAATATAAATAATTCACATATATATATTAGAATACACTA TAAAGAAATAATAATAATAATAATAATAATAAAATATGTTTCATTATTTTTACAAAGTATATATT TTTACCATAATAATATGTGCATCAAATCTATTTAATAACGTAATATATAATAATATATTATAAGT TATATATAAATATATATTTATAAAATATATATATATATGTGTGTGTGTGTGTTTATTCATTTACA GGATGGAGTAGAAATTGGAACATACAAATTATCATACCATAATGGAGGGAGACAATTCAGAATGT TAGCACAAAAAAACGAAAATGAAAAATCAAACGGAAATACCTTAAAGAATACATTGTTAAAAGAT GAAAACAAAAAAGGTAGTAAAACAAAAAAACTTGATCCTCAAATT Found at