TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 97739988 P. falciparum 3D7 GENOMIC chr14 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 3291006 ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41 Warning! 169 characters in sequence are not A, C, G, or T Found at i: i:3065966 original size:23 final size:23 Alignment explanation
Indices: 3065922--3065966 Score: 55 Period size: 23 Copynumber: 2.0 Consensus size: 23 3065912 AAAGGAAGTA * * * 3065922 AAATAAATAAAATAATTAATTTG 1 AAAAAAATAAAAGAATAAATTTG * * 3065945 AAAAAAATAAGAGAATACATTT 1 AAAAAAATAAAAGAATAAATTT 3065967 TAATATATTT Statistics Matches: 17, Mismatches: 5, Indels: 0 0.77 0.23 0.00 Matches are distributed among these distances: 23 17 1.00 ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29 Consensus pattern (23 bp): AAAAAAATAAAAGAATAAATTTG Left flanking sequence: Indices 3065422 -- 3065921 AAAATAAAAAAAATAAAAAAGGAAAGTAAAATATACCATAATATTATATATTTGATGTATATAAT TATTGTAGTAAATATATATATAATAATAAGGAACATATAAATATATATATATATATATTATATAT ATATATATATATATATATATATATATAATTATATAATATAATACATAATATTTATTATATATTAT AATAATAAGGGCATTTTACATTTTAGTATATTTGCCTATAAGAATATATTTATGCTGCTATTTTG TTAATTATAAATGTACATATTATATATATATATATATATATATATAATATTATATATTAAATAAA TATATATTGAAATATATACTTAATGAATATACGCACAAGAATTATATATATATTATTTTATATAT ATATTATTTTATATATATATTATTTTATATATATTTATATTATAATTATATTATATTATATATAT GTTTATATTATATATTATGTATATTTTTCAATTTAAAAGGAAGTA Right flanking sequence: Indices 3065967 -- 3066466 TAATATATTTTAAGTAAAATTTACGCACAGTATTATAAGATCATAATATTCAATTATATAATATT TAAAGAAACCTTTTTTTTTTTTTTTTCGTTTTCTTTTTTTTTTCCTTTTTTTTTTCTTTCTTTAT TTATTTTTTATTATATATTTTTTTTTTCATAATGAAAATATTATTATAACTTTTTTCAAAGTAGA GCATATTATGAAAATTGCAATTTTATACATAAAGGATTTATTAAATGTATAAATGTACTTCTAAA TATGTATTTATATATTTTTTTAATTTTTAATTAACTTTTTGCTCTCTTTTTTTAACTTTGATTAG TTAATTCTTTTACATTTTGTATAGGAAAAATTGTGATATAAAATTTCCATGAGAAATATACCTAA AATTTTAATATTACACAAAACATAAAAGTACATAATAATAAAGTTAAAAAAAAAAAAAAGAAATT ACGAAGAAATAAAGCGAAAACGCAAAAGCAAAAGGAAACGCAAAC Found at i:3066241 original size:12 final size:14 Alignment explanation
Indices: 3066209--3066241 Score: 38 Period size: 14 Copynumber: 2.4 Consensus size: 14 3066199 TTATTAAATG * 3066209 TATAAATGTACTTC 1 TATATATGTACTTC * * * 3066223 TAAATATGTATTTA 1 TATATATGTACTTC 3066237 TATAT 1 TATAT 3066242 TTTTTTAATT Statistics Matches: 14, Mismatches: 5, Indels: 0 0.74 0.26 0.00 Matches are distributed among these distances: 14 14 1.00 ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48 Consensus pattern (14 bp): TATATATGTACTTC Left flanking sequence: Indices 3065709 -- 3066208 ATATATATATATATATATAATATTATATATTAAATAAATATATATTGAAATATATACTTAATGAA TATACGCACAAGAATTATATATATATTATTTTATATATATATTATTTTATATATATATTATTTTA TATATATTTATATTATAATTATATTATATTATATATATGTTTATATTATATATTATGTATATTTT TCAATTTAAAAGGAAGTAAAATAAATAAAATAATTAATTTGAAAAAAATAAGAGAATACATTTTA ATATATTTTAAGTAAAATTTACGCACAGTATTATAAGATCATAATATTCAATTATATAATATTTA AAGAAACCTTTTTTTTTTTTTTTTCGTTTTCTTTTTTTTTTCCTTTTTTTTTTCTTTCTTTATTT ATTTTTTATTATATATTTTTTTTTTCATAATGAAAATATTATTATAACTTTTTTCAAAGTAGAGC ATATTATGAAAATTGCAATTTTATACATAAAGGATTTATTAAATG Right flanking sequence: Indices 3066242 -- 3066741 TTTTTTAATTTTTAATTAACTTTTTGCTCTCTTTTTTTAACTTTGATTAGTTAATTCTTTTACAT TTTGTATAGGAAAAATTGTGATATAAAATTTCCATGAGAAATATACCTAAAATTTTAATATTACA CAAAACATAAAAGTACATAATAATAAAGTTAAAAAAAAAAAAAAGAAATTACGAAGAAATAAAGC GAAAACGCAAAAGCAAAAGGAAACGCAAACAAAACCAAACTTAAACAGTGAAAAATAAAAATAAA TATTTGTATATATATATATATATATATATATATATATATATATATATATTATATAAATATAATAT AAATTTTTTGTTGTAATATTTATTTTAATATTTATATAACAATTCAAAGATAAAAGAAAAAAAAA ATGTATCGAAATTTATATGATACAGACAATATAATTTACTCTCCAGAAGGTAAAAAAGGAAAGTT ATAATATATATATATATATATATATATATATGTGTATGAATTAAT Found at i:3068447 original size:11 final size:11 Alignment explanation
Indices: 3068433--3068459 Score: 33 Period size: 11 Copynumber: 2.5 Consensus size: 11 3068423 TTTTTTTTTA * 3068433 ATTTTCGCTGT 1 ATTTTCACTGT * * 3068444 ATTTACATTGT 1 ATTTTCACTGT 3068455 ATTTT 1 ATTTT 3068460 TTGTATATAA Statistics Matches: 12, Mismatches: 4, Indels: 0 0.75 0.25 0.00 Matches are distributed among these distances: 11 12 1.00 ACGTcount: A:0.19, C:0.11, G:0.11, T:0.59 Consensus pattern (11 bp): ATTTTCACTGT Left flanking sequence: Indices 3067933 -- 3068432 ATTTTTATTTATTTTTTTGCATTTTTTTTTCTTTTTTCTTTTTTTTTTTTATTAAAACAATATTC TCCTTTTTTTTTTTTTTTTCACAATGAATAAAATAAGAAAATATTATTATTCATGAAAAACTACT TTATATTAAAAAGATGTCTTTGATTTTTTTTTTTTTTTTTTTTTTTTTCTATTACGTAAAGAAAT ATATATTATATATATTATAAGGTACTACAAAAGGAAATAAGTATTATGTAGAGGATTAAGAATGT ACACATAAATACATATTTTTAAAATTATTATATTCGATATATAAAATGTAATAATATATATATAT ATATATATATATTTATTTATTTAAAATATATGAAGTTCCTACCTTTTTATAATATATTCATAGAA GGAAAAAAAAAAAAAAAAGAAAAGAAAAAAAGATCCGTATGTTTATGCACCTATAATTATTTTCA TTACTGTAATAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA Right flanking sequence: Indices 3068460 -- 3068959 TTGTATATAAAAATATATACATTAATATATAAAGATAAATATATAAACACACTGTTTTTGTTTAT GCTTGGAAAAATTCATTATTTATTAAACATTCAAAAATAATATATAATTTATTATAATTATTATT TTATTATTATTATATTTAATTATATCACTCATAAAAAAAATAAAGAGATTTAAAAAATTTCAAGG ATTTAATATACTGATTGATAAAAAAAAAAAAAAAAAAAGAAGCTAATGTATCAAATGAAATTATA AAACATCATTTTGATAATTTTACCTTTTTGTATACAATAAATATTTATATTATAATTAAGTAACT TTTAATATTTAAAGTTTTTTCATATGATCTTAAGCAACTGGAATAAAAAAAAAATTATTATATTA TATTTTATACCTTGGTAAATTTAAAATTATTATATATATATATATATATATGTATTAATACAATC CTTATACATATATTCATATATATTGTATAAATTATTATTATAATG Found at i:3068500 original size:14 final size:14 Alignment explanation
Indices: 3068466--3068508 Score: 58 Period size: 14 Copynumber: 3.1 Consensus size: 14 3068456 TTTTTTGTAT * * 3068466 ATAAAAATATATAC 1 ATAAATATATAAAC * * 3068480 ATTAATATATAAAG 1 ATAAATATATAAAC 3068494 ATAAATATATAAAC 1 ATAAATATATAAAC 3068508 A 1 A 3068509 CACTGTTTTT Statistics Matches: 23, Mismatches: 6, Indels: 0 0.79 0.21 0.00 Matches are distributed among these distances: 14 23 1.00 ACGTcount: A:0.63, C:0.05, G:0.02, T:0.30 Consensus pattern (14 bp): ATAAATATATAAAC Left flanking sequence: Indices 3067966 -- 3068465 TTTTCTTTTTTTTTTTTATTAAAACAATATTCTCCTTTTTTTTTTTTTTTTCACAATGAATAAAA TAAGAAAATATTATTATTCATGAAAAACTACTTTATATTAAAAAGATGTCTTTGATTTTTTTTTT TTTTTTTTTTTTTTTCTATTACGTAAAGAAATATATATTATATATATTATAAGGTACTACAAAAG GAAATAAGTATTATGTAGAGGATTAAGAATGTACACATAAATACATATTTTTAAAATTATTATAT TCGATATATAAAATGTAATAATATATATATATATATATATATATTTATTTATTTAAAATATATGA AGTTCCTACCTTTTTATAATATATTCATAGAAGGAAAAAAAAAAAAAAAAGAAAAGAAAAAAAGA TCCGTATGTTTATGCACCTATAATTATTTTCATTACTGTAATAAATTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTAATTTTCGCTGTATTTACATTGTATTTTTTGTAT Right flanking sequence: Indices 3068509 -- 3069008 CACTGTTTTTGTTTATGCTTGGAAAAATTCATTATTTATTAAACATTCAAAAATAATATATAATT TATTATAATTATTATTTTATTATTATTATATTTAATTATATCACTCATAAAAAAAATAAAGAGAT TTAAAAAATTTCAAGGATTTAATATACTGATTGATAAAAAAAAAAAAAAAAAAAGAAGCTAATGT ATCAAATGAAATTATAAAACATCATTTTGATAATTTTACCTTTTTGTATACAATAAATATTTATA TTATAATTAAGTAACTTTTAATATTTAAAGTTTTTTCATATGATCTTAAGCAACTGGAATAAAAA AAAAATTATTATATTATATTTTATACCTTGGTAAATTTAAAATTATTATATATATATATATATAT ATGTATTAATACAATCCTTATACATATATTCATATATATTGTATAAATTATTATTATAATGTATA ATAAAGAGATGCTCTTTTTACATTATGTGTATATAATAATAAGAA Found at i:3068597 original size:11 final size:11 Alignment explanation
Indices: 3068573--3068614 Score: 54 Period size: 11 Copynumber: 3.8 Consensus size: 11 3068563 AATATATAAT 3068573 TTATTATAATTA 1 TTATTAT-ATTA * 3068585 TTATTTTATTA 1 TTATTATATTA 3068596 TTATTATATT- 1 TTATTATATTA * 3068606 TAATTATAT 1 TTATTATAT 3068615 CACTCATAAA Statistics Matches: 27, Mismatches: 3, Indels: 2 0.84 0.09 0.06 Matches are distributed among these distances: 10 8 0.30 11 13 0.48 12 6 0.22 ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64 Consensus pattern (11 bp): TTATTATATTA Left flanking sequence: Indices 3068073 -- 3068572 AAGATGTCTTTGATTTTTTTTTTTTTTTTTTTTTTTTTCTATTACGTAAAGAAATATATATTATA TATATTATAAGGTACTACAAAAGGAAATAAGTATTATGTAGAGGATTAAGAATGTACACATAAAT ACATATTTTTAAAATTATTATATTCGATATATAAAATGTAATAATATATATATATATATATATAT ATTTATTTATTTAAAATATATGAAGTTCCTACCTTTTTATAATATATTCATAGAAGGAAAAAAAA AAAAAAAAGAAAAGAAAAAAAGATCCGTATGTTTATGCACCTATAATTATTTTCATTACTGTAAT AAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTCGCTGTATTTACATTGTATTTTTTG TATATAAAAATATATACATTAATATATAAAGATAAATATATAAACACACTGTTTTTGTTTATGCT TGGAAAAATTCATTATTTATTAAACATTCAAAAATAATATATAAT Right flanking sequence: Indices 3068615 -- 3069114 CACTCATAAAAAAAATAAAGAGATTTAAAAAATTTCAAGGATTTAATATACTGATTGATAAAAAA AAAAAAAAAAAAAGAAGCTAATGTATCAAATGAAATTATAAAACATCATTTTGATAATTTTACCT TTTTGTATACAATAAATATTTATATTATAATTAAGTAACTTTTAATATTTAAAGTTTTTTCATAT GATCTTAAGCAACTGGAATAAAAAAAAAATTATTATATTATATTTTATACCTTGGTAAATTTAAA ATTATTATATATATATATATATATATGTATTAATACAATCCTTATACATATATTCATATATATTG TATAAATTATTATTATAATGTATAATAAAGAGATGCTCTTTTTACATTATGTGTATATAATAATA AGAATATGAAATATATATCATTTGATGTATATATATTTCTTTGATGTTTTATGGAGTATGCATAT AAATATATATATATATGTGTGTGTGTGTCTATATATATATATATA Found at i:3068598 original size:14 final size:15 Alignment explanation
Indices: 3068576--3068612 Score: 51 Period size: 14 Copynumber: 2.5 Consensus size: 15 3068566 ATATAATTTA * 3068576 TTATAATTATTAT-T 1 TTATTATTATTATAT 3068590 TTATTATTATTATAT 1 TTATTATTATTATAT 3068605 TTAATTAT 1 TT-ATTAT 3068613 ATCACTCATA Statistics Matches: 20, Mismatches: 1, Indels: 2 0.87 0.04 0.09 Matches are distributed among these distances: 14 12 0.60 15 3 0.15 16 5 0.25 ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65 Consensus pattern (15 bp): TTATTATTATTATAT Left flanking sequence: Indices 3068076 -- 3068575 ATGTCTTTGATTTTTTTTTTTTTTTTTTTTTTTTTCTATTACGTAAAGAAATATATATTATATAT ATTATAAGGTACTACAAAAGGAAATAAGTATTATGTAGAGGATTAAGAATGTACACATAAATACA TATTTTTAAAATTATTATATTCGATATATAAAATGTAATAATATATATATATATATATATATATT TATTTATTTAAAATATATGAAGTTCCTACCTTTTTATAATATATTCATAGAAGGAAAAAAAAAAA AAAAAGAAAAGAAAAAAAGATCCGTATGTTTATGCACCTATAATTATTTTCATTACTGTAATAAA TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTCGCTGTATTTACATTGTATTTTTTGTAT ATAAAAATATATACATTAATATATAAAGATAAATATATAAACACACTGTTTTTGTTTATGCTTGG AAAAATTCATTATTTATTAAACATTCAAAAATAATATATAATTTA Right flanking sequence: Indices 3068613 -- 3069112 ATCACTCATAAAAAAAATAAAGAGATTTAAAAAATTTCAAGGATTTAATATACTGATTGATAAAA AAAAAAAAAAAAAAAGAAGCTAATGTATCAAATGAAATTATAAAACATCATTTTGATAATTTTAC CTTTTTGTATACAATAAATATTTATATTATAATTAAGTAACTTTTAATATTTAAAGTTTTTTCAT ATGATCTTAAGCAACTGGAATAAAAAAAAAATTATTATATTATATTTTATACCTTGGTAAATTTA AAATTATTATATATATATATATATATATGTATTAATACAATCCTTATACATATATTCATATATAT TGTATAAATTATTATTATAATGTATAATAAAGAGATGCTCTTTTTACATTATGTGTATATAATAA TAAGAATATGAAATATATATCATTTGATGTATATATATTTCTTTGATGTTTTATGGAGTATGCAT ATAAATATATATATATATGTGTGTGTGTGTCTATATATATATATA Found at i:3068605 original size:16 final size:16 Alignment explanation
Indices: 3068561--3068613 Score: 67 Period size: 17 Copynumber: 3.2 Consensus size: 16 3068551 ACATTCAAAA * 3068561 ATAATATATAATTTATT 1 ATAAT-TATATTTTATT 3068578 ATAATTATTATTTTATT 1 ATAATTA-TATTTTATT * * 3068595 ATTATTATATTTAATT 1 ATAATTATATTTTATT 3068611 ATA 1 ATA 3068614 TCACTCATAA Statistics Matches: 31, Mismatches: 4, Indels: 3 0.82 0.11 0.08 Matches are distributed among these distances: 16 12 0.39 17 19 0.61 ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58 Consensus pattern (16 bp): ATAATTATATTTTATT Left flanking sequence: Indices 3068061 -- 3068560 CTTTATATTAAAAAGATGTCTTTGATTTTTTTTTTTTTTTTTTTTTTTTTCTATTACGTAAAGAA ATATATATTATATATATTATAAGGTACTACAAAAGGAAATAAGTATTATGTAGAGGATTAAGAAT GTACACATAAATACATATTTTTAAAATTATTATATTCGATATATAAAATGTAATAATATATATAT ATATATATATATATTTATTTATTTAAAATATATGAAGTTCCTACCTTTTTATAATATATTCATAG AAGGAAAAAAAAAAAAAAAAGAAAAGAAAAAAAGATCCGTATGTTTATGCACCTATAATTATTTT CATTACTGTAATAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTCGCTGTATTTACA TTGTATTTTTTGTATATAAAAATATATACATTAATATATAAAGATAAATATATAAACACACTGTT TTTGTTTATGCTTGGAAAAATTCATTATTTATTAAACATTCAAAA Right flanking sequence: Indices 3068614 -- 3069113 TCACTCATAAAAAAAATAAAGAGATTTAAAAAATTTCAAGGATTTAATATACTGATTGATAAAAA AAAAAAAAAAAAAAGAAGCTAATGTATCAAATGAAATTATAAAACATCATTTTGATAATTTTACC TTTTTGTATACAATAAATATTTATATTATAATTAAGTAACTTTTAATATTTAAAGTTTTTTCATA TGATCTTAAGCAACTGGAATAAAAAAAAAATTATTATATTATATTTTATACCTTGGTAAATTTAA AATTATTATATATATATATATATATATGTATTAATACAATCCTTATACATATATTCATATATATT GTATAAATTATTATTATAATGTATAATAAAGAGATGCTCTTTTTACATTATGTGTATATAATAAT AAGAATATGAAATATATATCATTTGATGTATATATATTTCTTTGATGTTTTATGGAGTATGCATA TAAATATATATATATATGTGTGTGTGTGTCTATATATATATATAT Found at i:3069394 original size:18 final size:19 Alignment explanation
Indices: 3069350--3069408 Score: 67 Period size: 18 Copynumber: 3.1 Consensus size: 19 3069340 TAAAAAGTAT * 3069350 ATATATAAATATATTACATA 1 ATATATAAATATA-TAAATA * 3069370 ATCTATAAATATA-AAATA 1 ATATATAAATATATAAATA * * * 3069388 TTATATATATATATATATA 1 ATATATAAATATATAAATA 3069407 AT 1 AT 3069409 TTTATATTTA Statistics Matches: 31, Mismatches: 7, Indels: 3 0.76 0.17 0.07 Matches are distributed among these distances: 18 14 0.45 19 5 0.16 20 12 0.39 ACGTcount: A:0.54, C:0.03, G:0.00, T:0.42 Consensus pattern (19 bp): ATATATAAATATATAAATA Left flanking sequence: Indices 3068850 -- 3069349 TATTTTATACCTTGGTAAATTTAAAATTATTATATATATATATATATATATGTATTAATACAATC CTTATACATATATTCATATATATTGTATAAATTATTATTATAATGTATAATAAAGAGATGCTCTT TTTACATTATGTGTATATAATAATAAGAATATGAAATATATATCATTTGATGTATATATATTTCT TTGATGTTTTATGGAGTATGCATATAAATATATATATATATGTGTGTGTGTGTCTATATATATAT ATATATATATATATATATTTCATATATATAATATATTTCATATATAATAAATGTATGTTATTTAT TTACATATTTGTGAAGAAGTTTATTTCGTATATAATATATTTATAAGTGTACACATTATATAAAT CCCTATATTTGTATGAATTTTTTATATTAATACACATATGATTTTATTACTTTTTTTTTTTTTTT TTTTTTATAACCACATTTTAGATATAACAAAAAAGTAAAAAGTAT Right flanking sequence: Indices 3069409 -- 3069908 TTTATATTTAGCTTTAATATAATTGGTGTGCTTTGCTCATTAAGTGTATCATAAAAAAATAACTG TCTTATAGTATATTTTATTTATTATTATTATTATTTTTTTTTTTTAATGAGTTAATATAGTATAT ATTTTGGTTATTTTTCTTTTTTTTTTATTGGTATGATCTCCATAAAAAATATATTGTATATATAT TATGAATATTAAAAGTGTGTATATACATATTTATAATAGTAAATATATAAATTATATTTATATAT AATATGAAGAGATAAAAGAAAGGCAGCATAACAAATAAAAAAATATCTATATATATTATATTTTT ATATTCATGCTTGTTTCAAAATATTGAGAGAATGAAAAATTGATGTAATATATTTTTTGATAATA ACAAAAAAAAAAATATATATATATTTGATAAAAGACAATTCGTTTATATATCCATAATAATTACC ATATTTGAATACATATATTTAATATAAATTCATATGTGTATAAAC Found at i:3069396 original size:20 final size:20 Alignment explanation
Indices: 3069349--3069415 Score: 74 Period size: 20 Copynumber: 3.2 Consensus size: 20 3069339 GTAAAAAGTA * * 3069349 TATATATAAATATATTACAT 1 TATATATAAATATATAATAT * * * 3069369 AATCTATAAATATAAAATAT 1 TATATATAAATATATAATAT * 3069389 TATATATATATATATATAATTT 1 TATATATA-A-ATATATAATAT 3069411 TATAT 1 TATAT 3069416 TTAGCTTTAA Statistics Matches: 36, Mismatches: 9, Indels: 2 0.77 0.19 0.04 Matches are distributed among these distances: 20 21 0.58 21 1 0.03 22 14 0.39 ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46 Consensus pattern (20 bp): TATATATAAATATATAATAT Left flanking sequence: Indices 3068849 -- 3069348 ATATTTTATACCTTGGTAAATTTAAAATTATTATATATATATATATATATATGTATTAATACAAT CCTTATACATATATTCATATATATTGTATAAATTATTATTATAATGTATAATAAAGAGATGCTCT TTTTACATTATGTGTATATAATAATAAGAATATGAAATATATATCATTTGATGTATATATATTTC TTTGATGTTTTATGGAGTATGCATATAAATATATATATATATGTGTGTGTGTGTCTATATATATA TATATATATATATATATATTTCATATATATAATATATTTCATATATAATAAATGTATGTTATTTA TTTACATATTTGTGAAGAAGTTTATTTCGTATATAATATATTTATAAGTGTACACATTATATAAA TCCCTATATTTGTATGAATTTTTTATATTAATACACATATGATTTTATTACTTTTTTTTTTTTTT TTTTTTTATAACCACATTTTAGATATAACAAAAAAGTAAAAAGTA Right flanking sequence: Indices 3069416 -- 3069915 TTAGCTTTAATATAATTGGTGTGCTTTGCTCATTAAGTGTATCATAAAAAAATAACTGTCTTATA GTATATTTTATTTATTATTATTATTATTTTTTTTTTTTAATGAGTTAATATAGTATATATTTTGG TTATTTTTCTTTTTTTTTTATTGGTATGATCTCCATAAAAAATATATTGTATATATATTATGAAT ATTAAAAGTGTGTATATACATATTTATAATAGTAAATATATAAATTATATTTATATATAATATGA AGAGATAAAAGAAAGGCAGCATAACAAATAAAAAAATATCTATATATATTATATTTTTATATTCA TGCTTGTTTCAAAATATTGAGAGAATGAAAAATTGATGTAATATATTTTTTGATAATAACAAAAA AAAAAATATATATATATTTGATAAAAGACAATTCGTTTATATATCCATAATAATTACCATATTTG AATACATATATTTAATATAAATTCATATGTGTATAAACATAAGTT Found at i:3069403 original size:22 final size:22 Alignment explanation
Indices: 3069347--3069415 Score: 74 Period size: 22 Copynumber: 3.0 Consensus size: 22 3069337 AAGTAAAAAG * 3069347 TATATATATAAATATATTACATAATC 1 TATATATATAAA-ATATT--AT-ATA * 3069373 TATAAATATAAAATATTATATA 1 TATATATATAAAATATTATATA * * 3069395 TATATATATATAATTTTATAT 1 TATATATATAAAATATTATAT 3069416 TTAGCTTTAA Statistics Matches: 38, Mismatches: 5, Indels: 4 0.81 0.11 0.09 Matches are distributed among these distances: 22 20 0.53 23 2 0.05 25 5 0.13 26 11 0.29 ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46 Consensus pattern (22 bp): TATATATATAAAATATTATATA Left flanking sequence: Indices 3068847 -- 3069346 TTATATTTTATACCTTGGTAAATTTAAAATTATTATATATATATATATATATATGTATTAATACA ATCCTTATACATATATTCATATATATTGTATAAATTATTATTATAATGTATAATAAAGAGATGCT CTTTTTACATTATGTGTATATAATAATAAGAATATGAAATATATATCATTTGATGTATATATATT TCTTTGATGTTTTATGGAGTATGCATATAAATATATATATATATGTGTGTGTGTGTCTATATATA TATATATATATATATATATATTTCATATATATAATATATTTCATATATAATAAATGTATGTTATT TATTTACATATTTGTGAAGAAGTTTATTTCGTATATAATATATTTATAAGTGTACACATTATATA AATCCCTATATTTGTATGAATTTTTTATATTAATACACATATGATTTTATTACTTTTTTTTTTTT TTTTTTTTTATAACCACATTTTAGATATAACAAAAAAGTAAAAAG Right flanking sequence: Indices 3069416 -- 3069915 TTAGCTTTAATATAATTGGTGTGCTTTGCTCATTAAGTGTATCATAAAAAAATAACTGTCTTATA GTATATTTTATTTATTATTATTATTATTTTTTTTTTTTAATGAGTTAATATAGTATATATTTTGG TTATTTTTCTTTTTTTTTTATTGGTATGATCTCCATAAAAAATATATTGTATATATATTATGAAT ATTAAAAGTGTGTATATACATATTTATAATAGTAAATATATAAATTATATTTATATATAATATGA AGAGATAAAAGAAAGGCAGCATAACAAATAAAAAAATATCTATATATATTATATTTTTATATTCA TGCTTGTTTCAAAATATTGAGAGAATGAAAAATTGATGTAATATATTTTTTGATAATAACAAAAA AAAAAATATATATATATTTGATAAAAGACAATTCGTTTATATATCCATAATAATTACCATATTTG AATACATATATTTAATATAAATTCATATGTGTATAAACATAAGTT Found at i:3069612 original size:11 final size:11 Alignment explanation
Indices: 3069585--3069612 Score: 35 Period size: 11 Copynumber: 2.5 Consensus size: 11 3069575 TCTCCATAAA * 3069585 AAATATATTGT 1 AAATATATTAT * 3069596 ATATATATTAT 1 AAATATATTAT * 3069607 GAATAT 1 AAATAT 3069613 TAAAAGTGTG Statistics Matches: 13, Mismatches: 4, Indels: 0 0.76 0.24 0.00 Matches are distributed among these distances: 11 13 1.00 ACGTcount: A:0.46, C:0.00, G:0.07, T:0.46 Consensus pattern (11 bp): AAATATATTAT Left flanking sequence: Indices 3069085 -- 3069584 TGTGTGTGTGTGTCTATATATATATATATATATATATATATATTTCATATATATAATATATTTCA TATATAATAAATGTATGTTATTTATTTACATATTTGTGAAGAAGTTTATTTCGTATATAATATAT TTATAAGTGTACACATTATATAAATCCCTATATTTGTATGAATTTTTTATATTAATACACATATG ATTTTATTACTTTTTTTTTTTTTTTTTTTTTATAACCACATTTTAGATATAACAAAAAAGTAAAA AGTATATATATAAATATATTACATAATCTATAAATATAAAATATTATATATATATATATATAATT TTATATTTAGCTTTAATATAATTGGTGTGCTTTGCTCATTAAGTGTATCATAAAAAAATAACTGT CTTATAGTATATTTTATTTATTATTATTATTATTTTTTTTTTTTAATGAGTTAATATAGTATATA TTTTGGTTATTTTTCTTTTTTTTTTATTGGTATGATCTCCATAAA Right flanking sequence: Indices 3069613 -- 3070112 TAAAAGTGTGTATATACATATTTATAATAGTAAATATATAAATTATATTTATATATAATATGAAG AGATAAAAGAAAGGCAGCATAACAAATAAAAAAATATCTATATATATTATATTTTTATATTCATG CTTGTTTCAAAATATTGAGAGAATGAAAAATTGATGTAATATATTTTTTGATAATAACAAAAAAA AAAATATATATATATTTGATAAAAGACAATTCGTTTATATATCCATAATAATTACCATATTTGAA TACATATATTTAATATAAATTCATATGTGTATAAACATAAGTTTTATATGTAAATGGAAAGGAAG AATATATAGGACACACATACAATAATAAATATATATATATATATATATATATATAATTACATTTT TATAATTTTTTTTTCATATATTTTTTTGACTTGTTAATATAATATATGTATAAATAATATATGAA AGGAATATATAATATTCAATTATATTTTTAGAATACATCTATTTA Found at i:3070016 original size:14 final size:15 Alignment explanation
Indices: 3069999--3070029 Score: 48 Period size: 15 Copynumber: 2.1 Consensus size: 15 3069989 TATAATTACA * 3069999 TTTTTATA-ATTTTT 1 TTTTCATATATTTTT 3070013 TTTTCATATATTTTT 1 TTTTCATATATTTTT 3070028 TT 1 TT 3070030 GACTTGTTAA Statistics Matches: 15, Mismatches: 1, Indels: 1 0.88 0.06 0.06 Matches are distributed among these distances: 14 7 0.47 15 8 0.53 ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77 Consensus pattern (15 bp): TTTTCATATATTTTT Left flanking sequence: Indices 3069499 -- 3069998 TATTATTATTTTTTTTTTTTAATGAGTTAATATAGTATATATTTTGGTTATTTTTCTTTTTTTTT TATTGGTATGATCTCCATAAAAAATATATTGTATATATATTATGAATATTAAAAGTGTGTATATA CATATTTATAATAGTAAATATATAAATTATATTTATATATAATATGAAGAGATAAAAGAAAGGCA GCATAACAAATAAAAAAATATCTATATATATTATATTTTTATATTCATGCTTGTTTCAAAATATT GAGAGAATGAAAAATTGATGTAATATATTTTTTGATAATAACAAAAAAAAAAATATATATATATT TGATAAAAGACAATTCGTTTATATATCCATAATAATTACCATATTTGAATACATATATTTAATAT AAATTCATATGTGTATAAACATAAGTTTTATATGTAAATGGAAAGGAAGAATATATAGGACACAC ATACAATAATAAATATATATATATATATATATATATATAATTACA Right flanking sequence: Indices 3070030 -- 3070529 GACTTGTTAATATAATATATGTATAAATAATATATGAAAGGAATATATAATATTCAATTATATTT TTAGAATACATCTATTTAAAGACCTCATATATATATTTATATATGTGGGATAAAAAGAAGTCTAT TATTTTGTATGTTTGATTACTTATAATTTATATATAATTATTTTTTTTTTTTAAGTTGAAAAAAA AAAAAAAAAAAAAAATTAAGGTTAATTTATATGTGCTTATAAGAATAAATTTTATGGAGTAATAA AACATTTACTTTCATATCATAATTTATTATAATATATATATATATATAAATATATTATATTTATT TTATTTTTATTTATTTTATTTTATTATTTTTTTTTTTATTTCGCTGATCTTATTTTTAGTTATTT ATATTTTTATTTATTTTTTGCTTATTTCATAATTTTTTTTATATTTTTCCTCGTTTTGCTTTATT TTAATATTTAAGAATTTGTAAATTTTTTTTTTTCTTATTGATATT i:3070372 original size:20 final size:21 Alignment explanation
Indices: 3070344--3070436 Score: 73 Period size: 20 Copynumber: 4.3 Consensus size: 21 3070334 TATAAATATA 3070344 TTATATTTATTT-TATTTTTAT 1 TTAT-TTTATTTCTATTTTTAT * * 3070365 TTATTTTATTT-TATTATTTT 1 TTATTTTATTTCTATTTTTAT * ** * 3070385 TTTTTTTATTTCGCTGATCTTAT 1 TTATTTTATTT--CTATTTTTAT * * * 3070408 TTTTAGTTATTTATATTTTTAT 1 TTAT-TTTATTTCTATTTTTAT 3070430 TTATTTT 1 TTATTTT 3070437 TTGCTTATTT Statistics Matches: 54, Mismatches: 14, Indels: 8 0.71 0.18 0.11 Matches are distributed among these distances: 20 24 0.44 21 6 0.11 22 9 0.17 23 9 0.17 24 6 0.11 ACGTcount: A:0.19, C:0.03, G:0.03, T:0.74 Consensus pattern (21 bp): TTATTTTATTTCTATTTTTAT Left flanking sequence: Indices 3069844 -- 3070343 ATATATCCATAATAATTACCATATTTGAATACATATATTTAATATAAATTCATATGTGTATAAAC ATAAGTTTTATATGTAAATGGAAAGGAAGAATATATAGGACACACATACAATAATAAATATATAT ATATATATATATATATATAATTACATTTTTATAATTTTTTTTTCATATATTTTTTTGACTTGTTA ATATAATATATGTATAAATAATATATGAAAGGAATATATAATATTCAATTATATTTTTAGAATAC ATCTATTTAAAGACCTCATATATATATTTATATATGTGGGATAAAAAGAAGTCTATTATTTTGTA TGTTTGATTACTTATAATTTATATATAATTATTTTTTTTTTTTAAGTTGAAAAAAAAAAAAAAAA AAAAAATTAAGGTTAATTTATATGTGCTTATAAGAATAAATTTTATGGAGTAATAAAACATTTAC TTTCATATCATAATTTATTATAATATATATATATATATAAATATA Right flanking sequence: Indices 3070437 -- 3070936 TTGCTTATTTCATAATTTTTTTTATATTTTTCCTCGTTTTGCTTTATTTTAATATTTAAGAATTT GTAAATTTTTTTTTTTCTTATTGATATTATAAAATTTTTACTTCACATGTATATAATATTATATA TATATATAATATATATATATATATATATATAAGTATAAATAACATTTATATGTGTAATTATATAA ATATTTGTTCAAGTTCCATTAATATATTATATATATATATATATATATATATATTTATATATATT TTTTTTTTTTTTTCCTTTTCATTTATATATATATTCATTTCAGCATTTATTCCTAAATATTCTTT TTCATTTATTTTTTTTATTTTTTCATGTGATTATTTTTATTATATTAAATTAAAAGAAATAAAAT TTTTAGTATCTCGAATTAGAAAAATTTGAAACAATTTGAAGACATTACGAAGGTATTTGTTGTAT TTATAAAAAAAAAAAATATATATATATATATTATTCCTTTTTATT Found at i:3070438 original size:28 final size:28 Alignment explanation
Indices: 3070406--3070467 Score: 73 Period size: 27 Copynumber: 2.2 Consensus size: 28 3070396 CGCTGATCTT * * 3070406 ATTTTTAGTTATTT-ATATTTTTATTTA 1 ATTTTTACTTATTTCATAATTTTATTTA * * * 3070433 TTTTTTGCTTATTTCATAATTTTTTTTA 1 ATTTTTACTTATTTCATAATTTTATTTA 3070461 TATTTTT 1 -ATTTTT 3070468 CCTCGTTTTG Statistics Matches: 27, Mismatches: 6, Indels: 2 0.77 0.17 0.06 Matches are distributed among these distances: 27 11 0.41 28 11 0.41 29 5 0.19 ACGTcount: A:0.21, C:0.03, G:0.03, T:0.73 Consensus pattern (28 bp): ATTTTTACTTATTTCATAATTTTATTTA Left flanking sequence: Indices 3069906 -- 3070405 AACATAAGTTTTATATGTAAATGGAAAGGAAGAATATATAGGACACACATACAATAATAAATATA TATATATATATATATATATATAATTACATTTTTATAATTTTTTTTTCATATATTTTTTTGACTTG TTAATATAATATATGTATAAATAATATATGAAAGGAATATATAATATTCAATTATATTTTTAGAA TACATCTATTTAAAGACCTCATATATATATTTATATATGTGGGATAAAAAGAAGTCTATTATTTT GTATGTTTGATTACTTATAATTTATATATAATTATTTTTTTTTTTTAAGTTGAAAAAAAAAAAAA AAAAAAAAATTAAGGTTAATTTATATGTGCTTATAAGAATAAATTTTATGGAGTAATAAAACATT TACTTTCATATCATAATTTATTATAATATATATATATATATAAATATATTATATTTATTTTATTT TTATTTATTTTATTTTATTATTTTTTTTTTTATTTCGCTGATCTT Right flanking sequence: Indices 3070468 -- 3070967 CCTCGTTTTGCTTTATTTTAATATTTAAGAATTTGTAAATTTTTTTTTTTCTTATTGATATTATA AAATTTTTACTTCACATGTATATAATATTATATATATATATAATATATATATATATATATATATA AGTATAAATAACATTTATATGTGTAATTATATAAATATTTGTTCAAGTTCCATTAATATATTATA TATATATATATATATATATATATTTATATATATTTTTTTTTTTTTTTCCTTTTCATTTATATATA TATTCATTTCAGCATTTATTCCTAAATATTCTTTTTCATTTATTTTTTTTATTTTTTCATGTGAT TATTTTTATTATATTAAATTAAAAGAAATAAAATTTTTAGTATCTCGAATTAGAAAAATTTGAAA CAATTTGAAGACATTACGAAGGTATTTGTTGTATTTATAAAAAAAAAAAATATATATATATATAT TATTCCTTTTTATTTTATTTTATTTTTTATTTAATTTTTTATTTT Found at i:3070444 original size:15 final size:13 Alignment explanation
Indices: 3070347--3070467 Score: 79 Period size: 12 Copynumber: 9.0 Consensus size: 13 3070337 AAATATATTA 3070347 TATTTATTTTATTTT 1 TATTTA-TTT-TTTT 3070362 TATTTATTTTATTT 1 TATTTATTTT-TTT 3070376 TA-TTATTTTTTT 1 TATTTATTTTTTT *** 3070388 T-TTTATTTCGCT 1 TATTTATTTTTTT * * 3070400 GATCTTATTTTTAGT 1 TAT-TTATTTTT-TT * 3070415 TATTTA-TATTTT 1 TATTTATTTTTTT 3070427 TATTTATTTTTTGCT 1 TATTTATTTTTT--T ** 3070442 TATTTCATAATTTT 1 TATTT-ATTTTTTT * 3070456 T-TTTATATTTTT 1 TATTTATTTTTTT 3070468 CCTCGTTTTG Statistics Matches: 83, Mismatches: 14, Indels: 21 0.70 0.12 0.18 Matches are distributed among these distances: 12 25 0.30 13 19 0.23 14 19 0.23 15 15 0.18 16 5 0.06 ACGTcount: A:0.19, C:0.04, G:0.03, T:0.74 Consensus pattern (13 bp): TATTTATTTTTTT Left flanking sequence: Indices 3069847 -- 3070346 TATCCATAATAATTACCATATTTGAATACATATATTTAATATAAATTCATATGTGTATAAACATA AGTTTTATATGTAAATGGAAAGGAAGAATATATAGGACACACATACAATAATAAATATATATATA TATATATATATATATAATTACATTTTTATAATTTTTTTTTCATATATTTTTTTGACTTGTTAATA TAATATATGTATAAATAATATATGAAAGGAATATATAATATTCAATTATATTTTTAGAATACATC TATTTAAAGACCTCATATATATATTTATATATGTGGGATAAAAAGAAGTCTATTATTTTGTATGT TTGATTACTTATAATTTATATATAATTATTTTTTTTTTTTAAGTTGAAAAAAAAAAAAAAAAAAA AAATTAAGGTTAATTTATATGTGCTTATAAGAATAAATTTTATGGAGTAATAAAACATTTACTTT CATATCATAATTTATTATAATATATATATATATATAAATATATTA Right flanking sequence: Indices 3070468 -- 3070967 CCTCGTTTTGCTTTATTTTAATATTTAAGAATTTGTAAATTTTTTTTTTTCTTATTGATATTATA AAATTTTTACTTCACATGTATATAATATTATATATATATATAATATATATATATATATATATATA AGTATAAATAACATTTATATGTGTAATTATATAAATATTTGTTCAAGTTCCATTAATATATTATA TATATATATATATATATATATATTTATATATATTTTTTTTTTTTTTTCCTTTTCATTTATATATA TATTCATTTCAGCATTTATTCCTAAATATTCTTTTTCATTTATTTTTTTTATTTTTTCATGTGAT TATTTTTATTATATTAAATTAAAAGAAATAAAATTTTTAGTATCTCGAATTAGAAAAATTTGAAA CAATTTGAAGACATTACGAAGGTATTTGTTGTATTTATAAAAAAAAAAAATATATATATATATAT TATTCCTTTTTATTTTATTTTATTTTTTATTTAATTTTTTATTTT Found at i:3070459 original size:48 final size:49 Alignment explanation
Indices: 3070355--3070460 Score: 124 Period size: 51 Copynumber: 2.2 Consensus size: 49 3070345 TATATTTATT * * ** * * 3070355 TTATTTTTATTTATTTTATTTTATTATTTTTTTTTTTATTTCGCTGATC 1 TTATTTTTAGTTATTTTATTTTATTAATTTTTTGCTTATTTCGATAATC * 3070404 TTATTTTTAGTTATTTATATTTTTATTTATTTTTTGCTTATTTC-ATAAT- 1 TTATTTTTAGTTATTT-TA-TTTTATTAATTTTTTGCTTATTTCGATAATC 3070453 TT-TTTTTA 1 TTATTTTTA 3070461 TATTTTTCCT Statistics Matches: 48, Mismatches: 7, Indels: 5 0.80 0.12 0.08 Matches are distributed among these distances: 48 6 0.12 49 17 0.35 50 5 0.10 51 20 0.42 ACGTcount: A:0.19, C:0.05, G:0.04, T:0.73 Consensus pattern (49 bp): TTATTTTTAGTTATTTTATTTTATTAATTTTTTGCTTATTTCGATAATC Left flanking sequence: Indices 3069855 -- 3070354 ATAATTACCATATTTGAATACATATATTTAATATAAATTCATATGTGTATAAACATAAGTTTTAT ATGTAAATGGAAAGGAAGAATATATAGGACACACATACAATAATAAATATATATATATATATATA TATATATAATTACATTTTTATAATTTTTTTTTCATATATTTTTTTGACTTGTTAATATAATATAT GTATAAATAATATATGAAAGGAATATATAATATTCAATTATATTTTTAGAATACATCTATTTAAA GACCTCATATATATATTTATATATGTGGGATAAAAAGAAGTCTATTATTTTGTATGTTTGATTAC TTATAATTTATATATAATTATTTTTTTTTTTTAAGTTGAAAAAAAAAAAAAAAAAAAAAATTAAG GTTAATTTATATGTGCTTATAAGAATAAATTTTATGGAGTAATAAAACATTTACTTTCATATCAT AATTTATTATAATATATATATATATATAAATATATTATATTTATT Right flanking sequence: Indices 3070461 -- 3070960 TATTTTTCCTCGTTTTGCTTTATTTTAATATTTAAGAATTTGTAAATTTTTTTTTTTCTTATTGA TATTATAAAATTTTTACTTCACATGTATATAATATTATATATATATATAATATATATATATATAT ATATATAAGTATAAATAACATTTATATGTGTAATTATATAAATATTTGTTCAAGTTCCATTAATA TATTATATATATATATATATATATATATATTTATATATATTTTTTTTTTTTTTTCCTTTTCATTT ATATATATATTCATTTCAGCATTTATTCCTAAATATTCTTTTTCATTTATTTTTTTTATTTTTTC ATGTGATTATTTTTATTATATTAAATTAAAAGAAATAAAATTTTTAGTATCTCGAATTAGAAAAA TTTGAAACAATTTGAAGACATTACGAAGGTATTTGTTGTATTTATAAAAAAAAAAAATATATATA TATATATTATTCCTTTTTATTTTATTTTATTTTTTATTTAATTTT Found at i:3070617 original size:33 final size:31 Alignment explanation
Indices: 3070546--3070631 Score: 89 Period size: 33 Copynumber: 2.7 Consensus size: 31 3070536 TTTTTACTTC * * 3070546 ACATGTATATA-ATATTATAT-ATATATATA 1 ACATATATATATATATTATATAATATAAATA * 3070575 ATATATATATATATATATATATAAGTATAAATA 1 ACATATATATATATAT-TATATAA-TATAAATA * * * 3070608 ACATTTATATGTGTAATTATATAA 1 ACATATATATATAT-ATTATATAA 3070632 ATATTTGTTC Statistics Matches: 45, Mismatches: 7, Indels: 6 0.78 0.12 0.10 Matches are distributed among these distances: 29 9 0.20 30 4 0.09 31 5 0.11 32 1 0.02 33 24 0.53 34 2 0.04 ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44 Consensus pattern (31 bp): ACATATATATATATATTATATAATATAAATA Left flanking sequence: Indices 3070046 -- 3070545 ATATGTATAAATAATATATGAAAGGAATATATAATATTCAATTATATTTTTAGAATACATCTATT TAAAGACCTCATATATATATTTATATATGTGGGATAAAAAGAAGTCTATTATTTTGTATGTTTGA TTACTTATAATTTATATATAATTATTTTTTTTTTTTAAGTTGAAAAAAAAAAAAAAAAAAAAAAT TAAGGTTAATTTATATGTGCTTATAAGAATAAATTTTATGGAGTAATAAAACATTTACTTTCATA TCATAATTTATTATAATATATATATATATATAAATATATTATATTTATTTTATTTTTATTTATTT TATTTTATTATTTTTTTTTTTATTTCGCTGATCTTATTTTTAGTTATTTATATTTTTATTTATTT TTTGCTTATTTCATAATTTTTTTTATATTTTTCCTCGTTTTGCTTTATTTTAATATTTAAGAATT TGTAAATTTTTTTTTTTCTTATTGATATTATAAAATTTTTACTTC Right flanking sequence: Indices 3070632 -- 3071131 ATATTTGTTCAAGTTCCATTAATATATTATATATATATATATATATATATATATTTATATATATT TTTTTTTTTTTTTCCTTTTCATTTATATATATATTCATTTCAGCATTTATTCCTAAATATTCTTT TTCATTTATTTTTTTTATTTTTTCATGTGATTATTTTTATTATATTAAATTAAAAGAAATAAAAT TTTTAGTATCTCGAATTAGAAAAATTTGAAACAATTTGAAGACATTACGAAGGTATTTGTTGTAT TTATAAAAAAAAAAAATATATATATATATATTATTCCTTTTTATTTTATTTTATTTTTTATTTAA TTTTTTATTTTTATTTTTTTTGTTTTATTATAAATATAAATTCACATTATTTTTCAAATTAAGAA GTAAAAAATATAAGCAAATTAAGACATTCAAGCGTAATTGTACATACATATATATATATATATAT ATATATATAGGATTGCCCTATAGAAAAAAAAATATATATTTTAAG Found at i:3070776 original size:14 final size:13 Alignment explanation
Indices: 3070754--3070785 Score: 41 Period size: 14 Copynumber: 2.4 Consensus size: 13 3070744 TATTCCTAAA 3070754 TATTCTTTTTCATT 1 TATTCTTTTT-ATT * 3070768 TATTTTTTTTATT 1 TATTCTTTTTATT * 3070781 TTTTC 1 TATTC 3070786 ATGTGATTAT Statistics Matches: 15, Mismatches: 3, Indels: 1 0.79 0.16 0.05 Matches are distributed among these distances: 13 6 0.40 14 9 0.60 ACGTcount: A:0.12, C:0.09, G:0.00, T:0.78 Consensus pattern (13 bp): TATTCTTTTTATT Left flanking sequence: Indices 3070254 -- 3070753 TATGTGCTTATAAGAATAAATTTTATGGAGTAATAAAACATTTACTTTCATATCATAATTTATTA TAATATATATATATATATAAATATATTATATTTATTTTATTTTTATTTATTTTATTTTATTATTT TTTTTTTTATTTCGCTGATCTTATTTTTAGTTATTTATATTTTTATTTATTTTTTGCTTATTTCA TAATTTTTTTTATATTTTTCCTCGTTTTGCTTTATTTTAATATTTAAGAATTTGTAAATTTTTTT TTTTCTTATTGATATTATAAAATTTTTACTTCACATGTATATAATATTATATATATATATAATAT ATATATATATATATATATAAGTATAAATAACATTTATATGTGTAATTATATAAATATTTGTTCAA GTTCCATTAATATATTATATATATATATATATATATATATATTTATATATATTTTTTTTTTTTTT TCCTTTTCATTTATATATATATTCATTTCAGCATTTATTCCTAAA Right flanking sequence: Indices 3070786 -- 3071285 ATGTGATTATTTTTATTATATTAAATTAAAAGAAATAAAATTTTTAGTATCTCGAATTAGAAAAA TTTGAAACAATTTGAAGACATTACGAAGGTATTTGTTGTATTTATAAAAAAAAAAAATATATATA TATATATTATTCCTTTTTATTTTATTTTATTTTTTATTTAATTTTTTATTTTTATTTTTTTTGTT TTATTATAAATATAAATTCACATTATTTTTCAAATTAAGAAGTAAAAAATATAAGCAAATTAAGA CATTCAAGCGTAATTGTACATACATATATATATATATATATATATATATAGGATTGCCCTATAGA AAAAAAAATATATATTTTAAGAAGATAAAATAAGTACGTAAAATTTAAGAGATACATTGAGTTAA AATATACATAAAAAGAAGGAATACATATTGATTTGTATACATTAAATTGTGTATTTTATAATATA TAGTATTATATAATATATCATATAGTTGATATAATTTTTTATTTA Found at i:3070781 original size:13 final size:14 Alignment explanation
Indices: 3070754--3070785 Score: 43 Period size: 13 Copynumber: 2.4 Consensus size: 14 3070744 TATTCCTAAA 3070754 TATTCTTTTTCATT 1 TATTCTTTTTCATT * 3070768 TATT-TTTTTTATT 1 TATTCTTTTTCATT * 3070781 TTTTC 1 TATTC 3070786 ATGTGATTAT Statistics Matches: 15, Mismatches: 2, Indels: 2 0.79 0.11 0.11 Matches are distributed among these distances: 13 11 0.73 14 4 0.27 ACGTcount: A:0.12, C:0.09, G:0.00, T:0.78 Consensus pattern (14 bp): TATTCTTTTTCATT Left flanking sequence: Indices 3070254 -- 3070753 TATGTGCTTATAAGAATAAATTTTATGGAGTAATAAAACATTTACTTTCATATCATAATTTATTA TAATATATATATATATATAAATATATTATATTTATTTTATTTTTATTTATTTTATTTTATTATTT TTTTTTTTATTTCGCTGATCTTATTTTTAGTTATTTATATTTTTATTTATTTTTTGCTTATTTCA TAATTTTTTTTATATTTTTCCTCGTTTTGCTTTATTTTAATATTTAAGAATTTGTAAATTTTTTT TTTTCTTATTGATATTATAAAATTTTTACTTCACATGTATATAATATTATATATATATATAATAT ATATATATATATATATATAAGTATAAATAACATTTATATGTGTAATTATATAAATATTTGTTCAA GTTCCATTAATATATTATATATATATATATATATATATATATTTATATATATTTTTTTTTTTTTT TCCTTTTCATTTATATATATATTCATTTCAGCATTTATTCCTAAA Right flanking sequence: Indices 3070786 -- 3071285 ATGTGATTATTTTTATTATATTAAATTAAAAGAAATAAAATTTTTAGTATCTCGAATTAGAAAAA TTTGAAACAATTTGAAGACATTACGAAGGTATTTGTTGTATTTATAAAAAAAAAAAATATATATA TATATATTATTCCTTTTTATTTTATTTTATTTTTTATTTAATTTTTTATTTTTATTTTTTTTGTT TTATTATAAATATAAATTCACATTATTTTTCAAATTAAGAAGTAAAAAATATAAGCAAATTAAGA CATTCAAGCGTAATTGTACATACATATATATATATATATATATATATATAGGATTGCCCTATAGA AAAAAAAATATATATTTTAAGAAGATAAAATAAGTACGTAAAATTTAAGAGATACATTGAGTTAA AATATACATAAAAAGAAGGAATACATATTGATTTGTATACATTAAATTGTGTATTTTATAATATA TAGTATTATATAATATATCATATAGTTGATATAATTTTTTATTTA Found at i:3070785 original size:21 final size:22 Alignment explanation
Indices: 3070759--3070802 Score: 67 Period size: 22 Copynumber: 2.0 Consensus size: 22 3070749 CTAAATATTC * * 3070759 TTTTTCAT-TTATTTTTTTTAT 1 TTTTTCATGTGATTATTTTTAT 3070780 TTTTTCATGTGATTATTTTTAT 1 TTTTTCATGTGATTATTTTTAT 3070802 T 1 T 3070803 ATATTAAATT Statistics Matches: 20, Mismatches: 2, Indels: 1 0.87 0.09 0.04 Matches are distributed among these distances: 21 8 0.40 22 12 0.60 ACGTcount: A:0.16, C:0.05, G:0.05, T:0.75 Consensus pattern (22 bp): TTTTTCATGTGATTATTTTTAT Left flanking sequence: Indices 3070259 -- 3070758 GCTTATAAGAATAAATTTTATGGAGTAATAAAACATTTACTTTCATATCATAATTTATTATAATA TATATATATATATAAATATATTATATTTATTTTATTTTTATTTATTTTATTTTATTATTTTTTTT TTTATTTCGCTGATCTTATTTTTAGTTATTTATATTTTTATTTATTTTTTGCTTATTTCATAATT TTTTTTATATTTTTCCTCGTTTTGCTTTATTTTAATATTTAAGAATTTGTAAATTTTTTTTTTTC TTATTGATATTATAAAATTTTTACTTCACATGTATATAATATTATATATATATATAATATATATA TATATATATATATAAGTATAAATAACATTTATATGTGTAATTATATAAATATTTGTTCAAGTTCC ATTAATATATTATATATATATATATATATATATATATTTATATATATTTTTTTTTTTTTTTCCTT TTCATTTATATATATATTCATTTCAGCATTTATTCCTAAATATTC Right flanking sequence: Indices 3070803 -- 3071302 ATATTAAATTAAAAGAAATAAAATTTTTAGTATCTCGAATTAGAAAAATTTGAAACAATTTGAAG ACATTACGAAGGTATTTGTTGTATTTATAAAAAAAAAAAATATATATATATATATTATTCCTTTT TATTTTATTTTATTTTTTATTTAATTTTTTATTTTTATTTTTTTTGTTTTATTATAAATATAAAT TCACATTATTTTTCAAATTAAGAAGTAAAAAATATAAGCAAATTAAGACATTCAAGCGTAATTGT ACATACATATATATATATATATATATATATATAGGATTGCCCTATAGAAAAAAAAATATATATTT TAAGAAGATAAAATAAGTACGTAAAATTTAAGAGATACATTGAGTTAAAATATACATAAAAAGAA GGAATACATATTGATTTGTATACATTAAATTGTGTATTTTATAATATATAGTATTATATAATATA TCATATAGTTGATATAATTTTTTATTTATTATACCATTTTTATAT Found at i:3070952 original size:12 final size:12 Alignment explanation
Indices: 3070935--3070975 Score: 66 Period size: 12 Copynumber: 3.3 Consensus size: 12 3070925 TTCCTTTTTA 3070935 TTTTATTTTATT 1 TTTTATTTTATT * 3070947 TTTTATTTAATT 1 TTTTATTTTATT 3070959 TTTTATTTTTATT 1 TTTTA-TTTTATT 3070972 TTTT 1 TTTT 3070976 TTGTTTTATT Statistics Matches: 26, Mismatches: 2, Indels: 1 0.90 0.07 0.03 Matches are distributed among these distances: 12 16 0.62 13 10 0.38 ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83 Consensus pattern (12 bp): TTTTATTTTATT Left flanking sequence: Indices 3070435 -- 3070934 TTTTGCTTATTTCATAATTTTTTTTATATTTTTCCTCGTTTTGCTTTATTTTAATATTTAAGAAT TTGTAAATTTTTTTTTTTCTTATTGATATTATAAAATTTTTACTTCACATGTATATAATATTATA TATATATATAATATATATATATATATATATATAAGTATAAATAACATTTATATGTGTAATTATAT AAATATTTGTTCAAGTTCCATTAATATATTATATATATATATATATATATATATATTTATATATA TTTTTTTTTTTTTTTCCTTTTCATTTATATATATATTCATTTCAGCATTTATTCCTAAATATTCT TTTTCATTTATTTTTTTTATTTTTTCATGTGATTATTTTTATTATATTAAATTAAAAGAAATAAA ATTTTTAGTATCTCGAATTAGAAAAATTTGAAACAATTTGAAGACATTACGAAGGTATTTGTTGT ATTTATAAAAAAAAAAAATATATATATATATATTATTCCTTTTTA Right flanking sequence: Indices 3070976 -- 3071475 TTGTTTTATTATAAATATAAATTCACATTATTTTTCAAATTAAGAAGTAAAAAATATAAGCAAAT TAAGACATTCAAGCGTAATTGTACATACATATATATATATATATATATATATATAGGATTGCCCT ATAGAAAAAAAAATATATATTTTAAGAAGATAAAATAAGTACGTAAAATTTAAGAGATACATTGA GTTAAAATATACATAAAAAGAAGGAATACATATTGATTTGTATACATTAAATTGTGTATTTTATA ATATATAGTATTATATAATATATCATATAGTTGATATAATTTTTTATTTATTATACCATTTTTAT ATTATATCCTCATAATTTATTTTTACAAACATGTCATCTGTGTCAACCTTACCTTATATTGGAAG CAAAATTTCCCTAATTTCCAACTCTGAAATTAGATACGAAGGAATTTTATATACGATTAATACTC ACGAATCTACCGTTGCCTTACAGAATGTTCGTTCTTTTGGTACAG Found at i:3071794 original size:15 final size:15 Alignment explanation
Indices: 3071776--3071856 Score: 64 Period size: 15 Copynumber: 5.4 Consensus size: 15 3071766 TATAATTTCC * 3071776 ATTATAATAATAGAA 1 ATTATAATAATAAAA * ** 3071791 ATTATAACAATAACC 1 ATTATAATAATAAAA ** * 3071806 AGAATAATAATAATA 1 ATTATAATAATAAAA * * * 3071821 ATAACAATAATAATA 1 ATTATAATAATAAAA * ** * 3071836 ATTACAAATATAGAA 1 ATTATAATAATAAAA 3071851 ATTATA 1 ATTATA 3071857 GAAATTATGA Statistics Matches: 49, Mismatches: 17, Indels: 0 0.74 0.26 0.00 Matches are distributed among these distances: 15 49 1.00 ACGTcount: A:0.60, C:0.06, G:0.04, T:0.30 Consensus pattern (15 bp): ATTATAATAATAAAA Left flanking sequence: Indices 3071276 -- 3071775 TTTTTATTTATTATACCATTTTTATATTATATCCTCATAATTTATTTTTACAAACATGTCATCTG TGTCAACCTTACCTTATATTGGAAGCAAAATTTCCCTAATTTCCAACTCTGAAATTAGATACGAA GGAATTTTATATACGATTAATACTCACGAATCTACCGTTGCCTTACAGAATGTTCGTTCTTTTGG TACAGAGGGAAGAAGGCAACCAGATATTGCGCCATCTAATGAAGTGTACGACTTTATAATATTTC GAGGTAAAGATATTAAGGATGTTACTGTAAGTGAAACAGGAAAAAATATCCCAGACGATCCAGCT ATTGTTTCTATGAATATAGCTCCTAGTTCTAAGAACAATATAACAGATAACTTAAATTATAATAA TAATATGAATATTAATAAATCATTAAAGGTAAATAATAATTTAATATCATCAAATGATAGGAATA TGAACAATAGGAGATATTATAATAATAGACCGAACTATAATTTCC Right flanking sequence: Indices 3071857 -- 3072356 GAAATTATGAGAGATCGAATTATGTTATCGGGGAATTACAATCCCAACCAAACCCTGCTCTGAAA AATAAGTTTAGTCCTGATTTTGATTTTAATACTAATAATATGAAGTTTGATAAAAATAATATATT AGAAGAGAAAAATAAAGAAGATTCTACTGCCTTGAATAATCATATGCAAGTTGGGGGATATGATA AGAATTCAAGTTTCTTTGATAATATAAGCTGTGAAACTTTAGATAAAAAACAAGGAATTGATGAA AAGGTCGATAGAGAAAAGTTAAGAATGCTAGATGTTGACACTTTTGGAATAGCAGCTGCACATTA TAGGACTAATATGCATAATAGACATCAAAACCGAATGAAAATGAGAAATAATCGAAAGCATAAAA TATTTTCACAGAATAATTATAATTATTTTAACAGGAATCAAAATCCTTTTAATAGATATCCACCA TATTAGTTATATATGATGGAAGCACTTGGAAGAGGGAAATATATT Found at i:3072640 original size:11 final size:11 Alignment explanation
Indices: 3072624--3072647 Score: 41 Period size: 11 Copynumber: 2.2 Consensus size: 11 3072614 TTTTATTCCT 3072624 TTATTCATACA 1 TTATTCATACA * 3072635 TTATTCATTCA 1 TTATTCATACA 3072646 TT 1 TT 3072648 TATCCATTTA Statistics Matches: 12, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 11 12 1.00 ACGTcount: A:0.29, C:0.17, G:0.00, T:0.54 Consensus pattern (11 bp): TTATTCATACA Left flanking sequence: Indices 3072124 -- 3072623 ATAGAGAAAAGTTAAGAATGCTAGATGTTGACACTTTTGGAATAGCAGCTGCACATTATAGGACT AATATGCATAATAGACATCAAAACCGAATGAAAATGAGAAATAATCGAAAGCATAAAATATTTTC ACAGAATAATTATAATTATTTTAACAGGAATCAAAATCCTTTTAATAGATATCCACCATATTAGT TATATATGATGGAAGCACTTGGAAGAGGGAAATATATTACATATATAAAATATATATATATATAT ATATATATATATATATATATTGAGATATATGTATGCATGTATGTATGTATTTATTTTACGTATTT TTTTTTTTTTTTTTTTTTATTATAATTTATAATTGTTTGTAATTTTTACGTGAGTAATACACACA TATAAGTTTATATATAAATGGATAAGTGTATACCTATATTTATTTATGTTTTATATTTTATACGT TTTTATATTTTAATTCGTAGATTTGCCCATTTAAATTTTATTCCT Right flanking sequence: Indices 3072648 -- 3073147 TATCCATTTATTTATTTATTATTTTTCTTTTTAAATGTGGAGTAAATATATATATATATATATAT ATATATATATATTAAATTTCCTTGAGTGCACATTTTTTTAAAATATATAGTTGAGCATAACATAC GCATACATATATGTATACAATATAATATAATAAATATATATTATATTATATTATATATATGTGCA CATTTTTAAACTTGGAATAATTATAAGATATATAACTTACAAATTGTTTAATTAGTTTCTTTTTT TTCTTTTTCTTTTTTTTTTTTTTTACTTTCTTTTTTACTTTCTTTTTTACTTTCTTTTTTTTTTT CTTTTCTTTTTTTTGTTTTTTTTTTTTTTTTTCATTCCTTTTAAGAAATTATGGATATATCTTAT AATTTTATTACAATAAATGAGTGTTATTCTATATTCAACTTTTAATGTAATATATTCAATATATA ATAATAATTTTAACTAATCAAAAAATAAATAAGGCACTGTGATCA Found at i:3072655 original size:12 final size:12 Alignment explanation
Indices: 3072618--3072671 Score: 59 Period size: 12 Copynumber: 4.7 Consensus size: 12 3072608 TTTAAATTTT * 3072618 ATTCCTTTATTC 1 ATTCATTTATTC * 3072630 ATACA-TTATTC 1 ATTCATTTATTC * 3072641 ATTCATTTATCC 1 ATTCATTTATTC * * 3072653 ATTTATTTATTT 1 ATTCATTTATTC 3072665 ATT-ATTT 1 ATTCATTT 3072672 TTCTTTTTAA Statistics Matches: 34, Mismatches: 7, Indels: 3 0.77 0.16 0.07 Matches are distributed among these distances: 11 14 0.41 12 20 0.59 ACGTcount: A:0.26, C:0.15, G:0.00, T:0.59 Consensus pattern (12 bp): ATTCATTTATTC Left flanking sequence: Indices 3072118 -- 3072617 AGGTCGATAGAGAAAAGTTAAGAATGCTAGATGTTGACACTTTTGGAATAGCAGCTGCACATTAT AGGACTAATATGCATAATAGACATCAAAACCGAATGAAAATGAGAAATAATCGAAAGCATAAAAT ATTTTCACAGAATAATTATAATTATTTTAACAGGAATCAAAATCCTTTTAATAGATATCCACCAT ATTAGTTATATATGATGGAAGCACTTGGAAGAGGGAAATATATTACATATATAAAATATATATAT ATATATATATATATATATATATATATTGAGATATATGTATGCATGTATGTATGTATTTATTTTAC GTATTTTTTTTTTTTTTTTTTTTTATTATAATTTATAATTGTTTGTAATTTTTACGTGAGTAATA CACACATATAAGTTTATATATAAATGGATAAGTGTATACCTATATTTATTTATGTTTTATATTTT ATACGTTTTTATATTTTAATTCGTAGATTTGCCCATTTAAATTTT Right flanking sequence: Indices 3072672 -- 3073171 TTCTTTTTAAATGTGGAGTAAATATATATATATATATATATATATATATATATTAAATTTCCTTG AGTGCACATTTTTTTAAAATATATAGTTGAGCATAACATACGCATACATATATGTATACAATATA ATATAATAAATATATATTATATTATATTATATATATGTGCACATTTTTAAACTTGGAATAATTAT AAGATATATAACTTACAAATTGTTTAATTAGTTTCTTTTTTTTCTTTTTCTTTTTTTTTTTTTTT ACTTTCTTTTTTACTTTCTTTTTTACTTTCTTTTTTTTTTTCTTTTCTTTTTTTTGTTTTTTTTT TTTTTTTTCATTCCTTTTAAGAAATTATGGATATATCTTATAATTTTATTACAATAAATGAGTGT TATTCTATATTCAACTTTTAATGTAATATATTCAATATATAATAATAATTTTAACTAATCAAAAA ATAAATAAGGCACTGTGATCACATATATATATATATATATTATAG Found at i:3072953 original size:24 final size:24 Alignment explanation
Indices: 3072894--3073014 Score: 107 Period size: 24 Copynumber: 5.0 Consensus size: 24 3072884 AATTGTTTAA * * * 3072894 TTAGTTTCTTTTTTTTCTTT-TTCT 1 TTATTTTC-TTTTTTACTTTCTTTT * * 3072918 TTTTTTTTTTTTTTACTTTCTTTT 1 TTATTTTCTTTTTTACTTTCTTTT * 3072942 TTACTTTCTTTTTTACTTTCTTTT 1 TTATTTTCTTTTTTACTTTCTTTT * * ** * * 3072966 TTTTTTTCTTTTCTTTTTTTTGTT 1 TTATTTTCTTTTTTACTTTCTTTT * * * * * 3072990 TTTTTTTTTTTTTTTCATTCCTTT 1 TTATTTTCTTTTTTACTTTCTTTT 3073014 T 1 T 3073015 AAGAAATTAT Statistics Matches: 74, Mismatches: 22, Indels: 2 0.76 0.22 0.02 Matches are distributed among these distances: 23 10 0.14 24 64 0.86 ACGTcount: A:0.04, C:0.12, G:0.02, T:0.83 Consensus pattern (24 bp): TTATTTTCTTTTTTACTTTCTTTT Left flanking sequence: Indices 3072394 -- 3072893 ATATATATATTGAGATATATGTATGCATGTATGTATGTATTTATTTTACGTATTTTTTTTTTTTT TTTTTTTTATTATAATTTATAATTGTTTGTAATTTTTACGTGAGTAATACACACATATAAGTTTA TATATAAATGGATAAGTGTATACCTATATTTATTTATGTTTTATATTTTATACGTTTTTATATTT TAATTCGTAGATTTGCCCATTTAAATTTTATTCCTTTATTCATACATTATTCATTCATTTATCCA TTTATTTATTTATTATTTTTCTTTTTAAATGTGGAGTAAATATATATATATATATATATATATAT ATATATTAAATTTCCTTGAGTGCACATTTTTTTAAAATATATAGTTGAGCATAACATACGCATAC ATATATGTATACAATATAATATAATAAATATATATTATATTATATTATATATATGTGCACATTTT TAAACTTGGAATAATTATAAGATATATAACTTACAAATTGTTTAA Right flanking sequence: Indices 3073015 -- 3073514 AAGAAATTATGGATATATCTTATAATTTTATTACAATAAATGAGTGTTATTCTATATTCAACTTT TAATGTAATATATTCAATATATAATAATAATTTTAACTAATCAAAAAATAAATAAGGCACTGTGA TCACATATATATATATATATATTATAGAAGGTGGGAATAGATGTGCATAAAATTATACATCTGGT ATATTAAACAAATTTTTTTTTTTTTTTTTCTTATTATTGTGTTAATATGATATATATATATATAT AAAATAATAAAAATAAAATAAAATAAAATAAATAATTAAATAAATAAAAGCACAATTATGTTGTG GCTTATATATTATATATATATATATATATATATATGTACATATTTATATTGTAAAATATGAGAAT TCAATGGTAATTTTTTTCTTTTTCTTTTTTTTATGTACCAAAAAATAAGTACAAGTTTAAAATGA AGCATAAAAATGTGATGATATCAATGAAATATATAAATTTTTATA Found at