TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 97739988 P. falciparum 3D7 GENOMIC chr14 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 3291006 ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41 Warning! 169 characters in sequence are not A, C, G, or T Found at i: i:33142 original size:24 final size:24 Alignment explanation
Indices: 33101--33158 Score: 65 Period size: 24 Copynumber: 2.4 Consensus size: 24 33091 ATCTAAAATT * * * * 33101 TATATTTCTTGTTTTATTTATATAG 1 TATATTTTTTGTTATA-TTATAAAA * 33126 T-TATTTTTTTTTATATTATAAAA 1 TATATTTTTTGTTATATTATAAAA 33149 TATATTTTTT 1 TATATTTTTT 33159 ATATTACATA Statistics Matches: 27, Mismatches: 5, Indels: 3 0.77 0.14 0.09 Matches are distributed among these distances: 23 7 0.26 24 19 0.70 25 1 0.04 ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67 Consensus pattern (24 bp): TATATTTTTTGTTATATTATAAAA Left flanking sequence: Indices 32601 -- 33100 TTTATATTTTTTTTTTCTTACAAATAATAATTATTTTAATATATCATTCATTTTATTACTTCTTG TACTGTTTTTATATTAAATATTATACACCTAACATACAAAAATTTATGTTTTAATTAAATATTTA TTCATCACCATTTATGTAGATATAATTGAAAAATAGTAAATATATTTCTATTATACATAGACTAT ATCCCCATAGTTCTTTAACGTATAGAATTATTCTATTTATTTAAGATATTAAATATTATAATATT GTGCTTATATTCTGTTCCTTTTATCTTTTATTAAAGAGAAAAATACAAATACATTTCATTATACG CAAAACTAATAATTGAATATTGTAAATAAAAATATATTTAGTATCAAAAAATATGGTGACATATT TGGAAAAAAAATTAAAACAATATGTTAAAACATTTTTATATTTCTGAAAATGATTTCTAATAAAT ATATGCGTAATATTAATGTATTTAATAATTTAAACATCTAAAATT Right flanking sequence: Indices 33159 -- 33658 ATATTACATAAATATATATTTGAAGCCTCATTTTATGAGACATAAAATAATATAAATCTACCAAA AATTTTATAATTTATAAACATATATATATATATATATATAATAACCTTTTGCTTATATAAAAAAA ACTAAAACATTTAATATACAACAAAGAAATAGTAAAAATGTTGAATAAATAAATTTTAAAAAATT AATATAATTTTTTCAAAAATATGAAACCAAAAAAAAAATATATATGTGAACAAAAAAAAAAAAAA AAATTTTAGTTAAAATAAATATTTATTAGGTACAATAAATAAAATCTTAATTAAATTTCAACTAT AAATATATATACATTTTTTTTTTTATAATATTTATAATATAATTTTTCATAAATATGATATATAT AATATAATTATTTTTATTATTATATGCATATTTTATACAAAACCATATTTTAAAAATATTTTTTA CTTTTTTCATTTATTTAAAATCGAATTGTATAACGTTTCTATATA Found at i:33145 original size:21 final size:21 Alignment explanation
Indices: 33132--33179 Score: 73 Period size: 21 Copynumber: 2.2 Consensus size: 21 33122 ATAGTTATTT 33132 TTTTTTATATTATAAAATATA 1 TTTTTTATATTATAAAATATA * 33153 TTTTTTATATTACATAAATATA 1 TTTTTTATATTATA-AAATATA * 33175 TATTT 1 TTTTT 33180 GAAGCCTCAT Statistics Matches: 24, Mismatches: 2, Indels: 1 0.89 0.07 0.04 Matches are distributed among these distances: 21 13 0.54 22 11 0.46 ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58 Consensus pattern (21 bp): TTTTTTATATTATAAAATATA Left flanking sequence: Indices 32632 -- 33131 TATTTTAATATATCATTCATTTTATTACTTCTTGTACTGTTTTTATATTAAATATTATACACCTA ACATACAAAAATTTATGTTTTAATTAAATATTTATTCATCACCATTTATGTAGATATAATTGAAA AATAGTAAATATATTTCTATTATACATAGACTATATCCCCATAGTTCTTTAACGTATAGAATTAT TCTATTTATTTAAGATATTAAATATTATAATATTGTGCTTATATTCTGTTCCTTTTATCTTTTAT TAAAGAGAAAAATACAAATACATTTCATTATACGCAAAACTAATAATTGAATATTGTAAATAAAA ATATATTTAGTATCAAAAAATATGGTGACATATTTGGAAAAAAAATTAAAACAATATGTTAAAAC ATTTTTATATTTCTGAAAATGATTTCTAATAAATATATGCGTAATATTAATGTATTTAATAATTT AAACATCTAAAATTTATATTTCTTGTTTTATTTATATAGTTATTT Right flanking sequence: Indices 33180 -- 33679 GAAGCCTCATTTTATGAGACATAAAATAATATAAATCTACCAAAAATTTTATAATTTATAAACAT ATATATATATATATATATAATAACCTTTTGCTTATATAAAAAAAACTAAAACATTTAATATACAA CAAAGAAATAGTAAAAATGTTGAATAAATAAATTTTAAAAAATTAATATAATTTTTTCAAAAATA TGAAACCAAAAAAAAAATATATATGTGAACAAAAAAAAAAAAAAAAATTTTAGTTAAAATAAATA TTTATTAGGTACAATAAATAAAATCTTAATTAAATTTCAACTATAAATATATATACATTTTTTTT TTTATAATATTTATAATATAATTTTTCATAAATATGATATATATAATATAATTATTTTTATTATT ATATGCATATTTTATACAAAACCATATTTTAAAAATATTTTTTACTTTTTTCATTTATTTAAAAT CGAATTGTATAACGTTTCTATATAATAATTGTTATCCTTCTTATT Found at i:33156 original size:22 final size:23 Alignment explanation
Indices: 33112--33179 Score: 73 Period size: 22 Copynumber: 3.1 Consensus size: 23 33102 ATATTTCTTG * ** * 33112 TTTTAT-TTATATAGTTATTTTT 1 TTTTATATTACATAAATATATTT * 33134 TTTTATATTATA-AAATATA-TT 1 TTTTATATTACATAAATATATTT * 33155 TTTTATATTACATAAATATATAT 1 TTTTATATTACATAAATATATTT 33178 TT 1 TT 33180 GAAGCCTCAT Statistics Matches: 38, Mismatches: 5, Indels: 5 0.79 0.10 0.10 Matches are distributed among these distances: 21 13 0.34 22 17 0.45 23 8 0.21 ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62 Consensus pattern (23 bp): TTTTATATTACATAAATATATTT Left flanking sequence: Indices 32612 -- 33111 TTTTTCTTACAAATAATAATTATTTTAATATATCATTCATTTTATTACTTCTTGTACTGTTTTTA TATTAAATATTATACACCTAACATACAAAAATTTATGTTTTAATTAAATATTTATTCATCACCAT TTATGTAGATATAATTGAAAAATAGTAAATATATTTCTATTATACATAGACTATATCCCCATAGT TCTTTAACGTATAGAATTATTCTATTTATTTAAGATATTAAATATTATAATATTGTGCTTATATT CTGTTCCTTTTATCTTTTATTAAAGAGAAAAATACAAATACATTTCATTATACGCAAAACTAATA ATTGAATATTGTAAATAAAAATATATTTAGTATCAAAAAATATGGTGACATATTTGGAAAAAAAA TTAAAACAATATGTTAAAACATTTTTATATTTCTGAAAATGATTTCTAATAAATATATGCGTAAT ATTAATGTATTTAATAATTTAAACATCTAAAATTTATATTTCTTG Right flanking sequence: Indices 33180 -- 33679 GAAGCCTCATTTTATGAGACATAAAATAATATAAATCTACCAAAAATTTTATAATTTATAAACAT ATATATATATATATATATAATAACCTTTTGCTTATATAAAAAAAACTAAAACATTTAATATACAA CAAAGAAATAGTAAAAATGTTGAATAAATAAATTTTAAAAAATTAATATAATTTTTTCAAAAATA TGAAACCAAAAAAAAAATATATATGTGAACAAAAAAAAAAAAAAAAATTTTAGTTAAAATAAATA TTTATTAGGTACAATAAATAAAATCTTAATTAAATTTCAACTATAAATATATATACATTTTTTTT TTTATAATATTTATAATATAATTTTTCATAAATATGATATATATAATATAATTATTTTTATTATT ATATGCATATTTTATACAAAACCATATTTTAAAAATATTTTTTACTTTTTTCATTTATTTAAAAT CGAATTGTATAACGTTTCTATATAATAATTGTTATCCTTCTTATT Found at i:33524 original size:30 final size:29 Alignment explanation
Indices: 33481--33573 Score: 96 Period size: 30 Copynumber: 3.1 Consensus size: 29 33471 AAATTTCAAC * * 33481 TATAAATATATATACATTTTTTTTTTTATAA 1 TATATATA-ATATA-ATTTTTTTTATTATAA * * * * * 33512 TATTTATAATATAATTTTTCATAAATATGA 1 TATATATAATATAATTTTT-TTTATTATAA * * 33542 TATATATAATATAATTATTTTTATTATTA 1 TATATATAATATAATTTTTTTTATTATAA 33571 TAT 1 TAT 33574 GCATATTTTA Statistics Matches: 48, Mismatches: 13, Indels: 4 0.74 0.20 0.06 Matches are distributed among these distances: 29 15 0.31 30 27 0.56 31 6 0.12 ACGTcount: A:0.41, C:0.02, G:0.01, T:0.56 Consensus pattern (29 bp): TATATATAATATAATTTTTTTTATTATAA Left flanking sequence: Indices 32981 -- 33480 GTGACATATTTGGAAAAAAAATTAAAACAATATGTTAAAACATTTTTATATTTCTGAAAATGATT TCTAATAAATATATGCGTAATATTAATGTATTTAATAATTTAAACATCTAAAATTTATATTTCTT GTTTTATTTATATAGTTATTTTTTTTTATATTATAAAATATATTTTTTATATTACATAAATATAT ATTTGAAGCCTCATTTTATGAGACATAAAATAATATAAATCTACCAAAAATTTTATAATTTATAA ACATATATATATATATATATATAATAACCTTTTGCTTATATAAAAAAAACTAAAACATTTAATAT ACAACAAAGAAATAGTAAAAATGTTGAATAAATAAATTTTAAAAAATTAATATAATTTTTTCAAA AATATGAAACCAAAAAAAAAATATATATGTGAACAAAAAAAAAAAAAAAAATTTTAGTTAAAATA AATATTTATTAGGTACAATAAATAAAATCTTAATTAAATTTCAAC Right flanking sequence: Indices 33574 -- 34073 GCATATTTTATACAAAACCATATTTTAAAAATATTTTTTACTTTTTTCATTTATTTAAAATCGAA TTGTATAACGTTTCTATATAATAATTGTTATCCTTCTTATTTGGCAATTATTATGAAAACAATTA TTTTAATGATTTCTATTTTTATAATTATGTATAATATTTTTGAATATAATATTTAGCAAATGAAT GATACATAATAAAAAAAACGTACAAATAGGTTTTTCATATTCCATATAATAAGCTCAATAACTCA CTAATTATTTAAAAGAATTCTTTTAGAATAATTAAAGAATATAAAATTAATTATATTTATTTGTA TCTTATACTTAAATAAAAGTCTAAAATATTATATGCATTTAAAATTATATATATTACGTACATAG AACTTTACAGAATCCATACTAACAATATGAAAAACACAAAATAAAAAAATATTCCTTAAAAACAT ATAAACACAACACTTATATATTCTATGTAAAAAAAAAAAGGGAAA Found at i:35475 original size:14 final size:14 Alignment explanation
Indices: 35456--35483 Score: 49 Period size: 14 Copynumber: 2.0 Consensus size: 14 35446 AAACAGAAAA 35456 AAATATATATATAT 1 AAATATATATATAT * 35470 AAATATATATTTAT 1 AAATATATATATAT 35484 GTATGTATCT Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 14 13 1.00 ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46 Consensus pattern (14 bp): AAATATATATATAT Left flanking sequence: Indices 34956 -- 35455 GTGTGATTTAATATTTGATAAAGGACATTTACGTGTTTACGATATTCTGGATCAGCAGCATAAGC TTTCATTATTTGTCCTTCTGGGTCTGCGCTAGTTTTTACTTCACTTGAGTCGGTGTGATTTAATA TTTGGTAAAGGACATTTACGTGTTTACGATATTCTGGATCAGCAGCATAAGCTTTCATTATTTGT CCTTCTGGGTCAGCGCTAGTTTCTAATTCATCATTTGGATCAGTGTTATTTAATATTTGGTAAAG AACATTTAGGTGTTTACGATATTCTGGATCAGCTGCATAAGCTTTCATTATTTGTCCTTCTGGAT CTGCGCTAGTTAAGGTTGTTTGCTTAGTTTTTCTTAATGCGGTTTTTGCGTTTTTTTTACTGGTA CTTTTACCTTCAGCTAAAACTCTGCTTTCTCTAAAACTATAATCTGCAGCTTGTTTGTATTGGCT TGCACATATATAAACACCCTAAAAATAAATGATACAAACAGAAAA Right flanking sequence: Indices 35484 -- 35983 GTATGTATCTATGTATCTATATATTTCTAATAAGGATATTTAAATTCATTAATTAAAAAAGAAAA AAATTCAATTATATATTTTATATTTATATTATCATACCAATAAGGCTACGTATATTATTCCAAAA ATCAATGTGATGTTTTTGGCATGGAAGGAAGTTAAGGAACGTTTCTTTTCATTTTTATTTTGTAC TTCCATCAAAGAATATTTAGAGCAATTTTTCGAATTGAAATTTTTACAATTCGAAACTCCTGTAG ATTCAATATTACTTGCTTTTGAAATACGCATTTTTACTTAGAAGAAAATAAGAGTATATATGTTT TTTCTAATTTGTGTGTTTCTAAAATAATTATAAATATAAATATTATATATATATTTTTTTTTTTT TTTTAAATATATATTTTAAAATAATAAAATAAAAATAAAAAAAAAAAAACAATACATAAATATTT TTTTATTATTTTATTTTAATTTTTTTTTTTTTTACATAAATTACA Found at i:35729 original size:15 final size:16 Alignment explanation
Indices: 35702--35734 Score: 45 Period size: 15 Copynumber: 2.1 Consensus size: 16 35692 TATTTAGAGC ** 35702 AATTTTTCGAATT-GA 1 AATTTTTACAATTCGA 35717 AATTTTTACAATTCGA 1 AATTTTTACAATTCGA 35733 AA 1 AA 35735 CTCCTGTAGA Statistics Matches: 15, Mismatches: 2, Indels: 1 0.83 0.11 0.06 Matches are distributed among these distances: 15 11 0.73 16 4 0.27 ACGTcount: A:0.39, C:0.09, G:0.09, T:0.42 Consensus pattern (16 bp): AATTTTTACAATTCGA Left flanking sequence: Indices 35202 -- 35701 AATATTTGGTAAAGAACATTTAGGTGTTTACGATATTCTGGATCAGCTGCATAAGCTTTCATTAT TTGTCCTTCTGGATCTGCGCTAGTTAAGGTTGTTTGCTTAGTTTTTCTTAATGCGGTTTTTGCGT TTTTTTTACTGGTACTTTTACCTTCAGCTAAAACTCTGCTTTCTCTAAAACTATAATCTGCAGCT TGTTTGTATTGGCTTGCACATATATAAACACCCTAAAAATAAATGATACAAACAGAAAAAAATAT ATATATATAAATATATATTTATGTATGTATCTATGTATCTATATATTTCTAATAAGGATATTTAA ATTCATTAATTAAAAAAGAAAAAAATTCAATTATATATTTTATATTTATATTATCATACCAATAA GGCTACGTATATTATTCCAAAAATCAATGTGATGTTTTTGGCATGGAAGGAAGTTAAGGAACGTT TCTTTTCATTTTTATTTTGTACTTCCATCAAAGAATATTTAGAGC Right flanking sequence: Indices 35735 -- 36234 CTCCTGTAGATTCAATATTACTTGCTTTTGAAATACGCATTTTTACTTAGAAGAAAATAAGAGTA TATATGTTTTTTCTAATTTGTGTGTTTCTAAAATAATTATAAATATAAATATTATATATATATTT TTTTTTTTTTTTTAAATATATATTTTAAAATAATAAAATAAAAATAAAAAAAAAAAAACAATACA TAAATATTTTTTTATTATTTTATTTTAATTTTTTTTTTTTTTACATAAATTACATTTCAATGTTT TTTTTCATAAAAGATAAATACTATATATATATTTTTTCAATGATATAAATTATCATATCCTTGAA AGAATATATGATATATTTATAATTATGTAAGTTACAAGAAGCTAGAAATAATATATGTATTACAC TTACGACTATTGATTATAAAATAATTAATTATTTCATTGATATATTATTTTTATTGAATCTTAAA ATTAATAAAAGAATTTAGAATATATTTTATAATATATATTTTTTC Found at i:35855 original size:15 final size:16 Alignment explanation
Indices: 35830--35861 Score: 50 Period size: 15 Copynumber: 2.1 Consensus size: 16 35820 TGTGTTTCTA 35830 AAATAATTATAAATAT 1 AAATAATTATAAATAT * 35846 AAAT-ATTATATATAT 1 AAATAATTATAAATAT 35861 A 1 A 35862 TTTTTTTTTT Statistics Matches: 15, Mismatches: 1, Indels: 1 0.88 0.06 0.06 Matches are distributed among these distances: 15 11 0.73 16 4 0.27 ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41 Consensus pattern (16 bp): AAATAATTATAAATAT Left flanking sequence: Indices 35330 -- 35829 GTTTTTTTTACTGGTACTTTTACCTTCAGCTAAAACTCTGCTTTCTCTAAAACTATAATCTGCAG CTTGTTTGTATTGGCTTGCACATATATAAACACCCTAAAAATAAATGATACAAACAGAAAAAAAT ATATATATATAAATATATATTTATGTATGTATCTATGTATCTATATATTTCTAATAAGGATATTT AAATTCATTAATTAAAAAAGAAAAAAATTCAATTATATATTTTATATTTATATTATCATACCAAT AAGGCTACGTATATTATTCCAAAAATCAATGTGATGTTTTTGGCATGGAAGGAAGTTAAGGAACG TTTCTTTTCATTTTTATTTTGTACTTCCATCAAAGAATATTTAGAGCAATTTTTCGAATTGAAAT TTTTACAATTCGAAACTCCTGTAGATTCAATATTACTTGCTTTTGAAATACGCATTTTTACTTAG AAGAAAATAAGAGTATATATGTTTTTTCTAATTTGTGTGTTTCTA Right flanking sequence: Indices 35862 -- 36361 TTTTTTTTTTTTTTTTAAATATATATTTTAAAATAATAAAATAAAAATAAAAAAAAAAAAACAAT ACATAAATATTTTTTTATTATTTTATTTTAATTTTTTTTTTTTTTACATAAATTACATTTCAATG TTTTTTTTCATAAAAGATAAATACTATATATATATTTTTTCAATGATATAAATTATCATATCCTT GAAAGAATATATGATATATTTATAATTATGTAAGTTACAAGAAGCTAGAAATAATATATGTATTA CACTTACGACTATTGATTATAAAATAATTAATTATTTCATTGATATATTATTTTTATTGAATCTT AAAATTAATAAAAGAATTTAGAATATATTTTATAATATATATTTTTTCCACATGTTCTTTTGTAT CTATCTTTTTCTATTATAAAATATAAAAAAATATGAAATAAAAAATATTTTCTTTTTAAATATAC AATGTTAAAAATTACTAAATATAAGTAAATATATTTATATATATA Found at i:35856 original size:11 final size:11 Alignment explanation
Indices: 35842--35863 Score: 37 Period size: 11 Copynumber: 2.0 Consensus size: 11 35832 ATAATTATAA 35842 ATATAAATATT 1 ATATAAATATT * 35853 ATATATATATT 1 ATATAAATATT 35864 TTTTTTTTTT Statistics Matches: 10, Mismatches: 1, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 11 10 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (11 bp): ATATAAATATT Left flanking sequence: Indices 35342 -- 35841 GGTACTTTTACCTTCAGCTAAAACTCTGCTTTCTCTAAAACTATAATCTGCAGCTTGTTTGTATT GGCTTGCACATATATAAACACCCTAAAAATAAATGATACAAACAGAAAAAAATATATATATATAA ATATATATTTATGTATGTATCTATGTATCTATATATTTCTAATAAGGATATTTAAATTCATTAAT TAAAAAAGAAAAAAATTCAATTATATATTTTATATTTATATTATCATACCAATAAGGCTACGTAT ATTATTCCAAAAATCAATGTGATGTTTTTGGCATGGAAGGAAGTTAAGGAACGTTTCTTTTCATT TTTATTTTGTACTTCCATCAAAGAATATTTAGAGCAATTTTTCGAATTGAAATTTTTACAATTCG AAACTCCTGTAGATTCAATATTACTTGCTTTTGAAATACGCATTTTTACTTAGAAGAAAATAAGA GTATATATGTTTTTTCTAATTTGTGTGTTTCTAAAATAATTATAA Right flanking sequence: Indices 35864 -- 36363 TTTTTTTTTTTTTTAAATATATATTTTAAAATAATAAAATAAAAATAAAAAAAAAAAAACAATAC ATAAATATTTTTTTATTATTTTATTTTAATTTTTTTTTTTTTTACATAAATTACATTTCAATGTT TTTTTTCATAAAAGATAAATACTATATATATATTTTTTCAATGATATAAATTATCATATCCTTGA AAGAATATATGATATATTTATAATTATGTAAGTTACAAGAAGCTAGAAATAATATATGTATTACA CTTACGACTATTGATTATAAAATAATTAATTATTTCATTGATATATTATTTTTATTGAATCTTAA AATTAATAAAAGAATTTAGAATATATTTTATAATATATATTTTTTCCACATGTTCTTTTGTATCT ATCTTTTTCTATTATAAAATATAAAAAAATATGAAATAAAAAATATTTTCTTTTTAAATATACAA TGTTAAAAATTACTAAATATAAGTAAATATATTTATATATATATA Found at i:35908 original size:14 final size:14 Alignment explanation
Indices: 35891--35927 Score: 53 Period size: 14 Copynumber: 2.6 Consensus size: 14 35881 TATATATTTT * 35891 AAAATAATAAAATA 1 AAAATAATAAAAAA * 35905 AAAATAAAAAAAAA 1 AAAATAATAAAAAA * 35919 AAAACAATA 1 AAAATAATA 35928 CATAAATATT Statistics Matches: 19, Mismatches: 4, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 14 19 1.00 ACGTcount: A:0.84, C:0.03, G:0.00, T:0.14 Consensus pattern (14 bp): AAAATAATAAAAAA Left flanking sequence: Indices 35391 -- 35890 GCAGCTTGTTTGTATTGGCTTGCACATATATAAACACCCTAAAAATAAATGATACAAACAGAAAA AAATATATATATATAAATATATATTTATGTATGTATCTATGTATCTATATATTTCTAATAAGGAT ATTTAAATTCATTAATTAAAAAAGAAAAAAATTCAATTATATATTTTATATTTATATTATCATAC CAATAAGGCTACGTATATTATTCCAAAAATCAATGTGATGTTTTTGGCATGGAAGGAAGTTAAGG AACGTTTCTTTTCATTTTTATTTTGTACTTCCATCAAAGAATATTTAGAGCAATTTTTCGAATTG AAATTTTTACAATTCGAAACTCCTGTAGATTCAATATTACTTGCTTTTGAAATACGCATTTTTAC TTAGAAGAAAATAAGAGTATATATGTTTTTTCTAATTTGTGTGTTTCTAAAATAATTATAAATAT AAATATTATATATATATTTTTTTTTTTTTTTTAAATATATATTTT Right flanking sequence: Indices 35928 -- 36427 CATAAATATTTTTTTATTATTTTATTTTAATTTTTTTTTTTTTTACATAAATTACATTTCAATGT TTTTTTTCATAAAAGATAAATACTATATATATATTTTTTCAATGATATAAATTATCATATCCTTG AAAGAATATATGATATATTTATAATTATGTAAGTTACAAGAAGCTAGAAATAATATATGTATTAC ACTTACGACTATTGATTATAAAATAATTAATTATTTCATTGATATATTATTTTTATTGAATCTTA AAATTAATAAAAGAATTTAGAATATATTTTATAATATATATTTTTTCCACATGTTCTTTTGTATC TATCTTTTTCTATTATAAAATATAAAAAAATATGAAATAAAAAATATTTTCTTTTTAAATATACA ATGTTAAAAATTACTAAATATAAGTAAATATATTTATATATATATATATATATATATATATATAT ATATATATATATATATATATTTATTTATTTATTTATTCATATGTG Found at i:35912 original size:11 final size:11 Alignment explanation
Indices: 35891--35919 Score: 44 Period size: 11 Copynumber: 2.6 Consensus size: 11 35881 TATATATTTT * 35891 AAAATAATAAA 1 AAAAAAATAAA * 35902 ATAAAAATAAA 1 AAAAAAATAAA 35913 AAAAAAA 1 AAAAAAA 35920 AAACAATACA Statistics Matches: 15, Mismatches: 3, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 11 15 1.00 ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14 Consensus pattern (11 bp): AAAAAAATAAA Left flanking sequence: Indices 35391 -- 35890 GCAGCTTGTTTGTATTGGCTTGCACATATATAAACACCCTAAAAATAAATGATACAAACAGAAAA AAATATATATATATAAATATATATTTATGTATGTATCTATGTATCTATATATTTCTAATAAGGAT ATTTAAATTCATTAATTAAAAAAGAAAAAAATTCAATTATATATTTTATATTTATATTATCATAC CAATAAGGCTACGTATATTATTCCAAAAATCAATGTGATGTTTTTGGCATGGAAGGAAGTTAAGG AACGTTTCTTTTCATTTTTATTTTGTACTTCCATCAAAGAATATTTAGAGCAATTTTTCGAATTG AAATTTTTACAATTCGAAACTCCTGTAGATTCAATATTACTTGCTTTTGAAATACGCATTTTTAC TTAGAAGAAAATAAGAGTATATATGTTTTTTCTAATTTGTGTGTTTCTAAAATAATTATAAATAT AAATATTATATATATATTTTTTTTTTTTTTTTAAATATATATTTT Right flanking sequence: Indices 35920 -- 36419 AAACAATACATAAATATTTTTTTATTATTTTATTTTAATTTTTTTTTTTTTTACATAAATTACAT TTCAATGTTTTTTTTCATAAAAGATAAATACTATATATATATTTTTTCAATGATATAAATTATCA TATCCTTGAAAGAATATATGATATATTTATAATTATGTAAGTTACAAGAAGCTAGAAATAATATA TGTATTACACTTACGACTATTGATTATAAAATAATTAATTATTTCATTGATATATTATTTTTATT GAATCTTAAAATTAATAAAAGAATTTAGAATATATTTTATAATATATATTTTTTCCACATGTTCT TTTGTATCTATCTTTTTCTATTATAAAATATAAAAAAATATGAAATAAAAAATATTTTCTTTTTA AATATACAATGTTAAAAATTACTAAATATAAGTAAATATATTTATATATATATATATATATATAT ATATATATATATATATATATATATATATTTATTTATTTATTTATT Found at i:35964 original size:14 final size:14 Alignment explanation
Indices: 35938--35969 Score: 43 Period size: 14 Copynumber: 2.3 Consensus size: 14 35928 CATAAATATT * 35938 TTTTTATTATTTTA 1 TTTTAATTATTTTA * * 35952 TTTTAATTTTTTTT 1 TTTTAATTATTTTA 35966 TTTT 1 TTTT 35970 TTACATAAAT Statistics Matches: 15, Mismatches: 3, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 14 15 1.00 ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84 Consensus pattern (14 bp): TTTTAATTATTTTA Left flanking sequence: Indices 35438 -- 35937 AATGATACAAACAGAAAAAAATATATATATATAAATATATATTTATGTATGTATCTATGTATCTA TATATTTCTAATAAGGATATTTAAATTCATTAATTAAAAAAGAAAAAAATTCAATTATATATTTT ATATTTATATTATCATACCAATAAGGCTACGTATATTATTCCAAAAATCAATGTGATGTTTTTGG CATGGAAGGAAGTTAAGGAACGTTTCTTTTCATTTTTATTTTGTACTTCCATCAAAGAATATTTA GAGCAATTTTTCGAATTGAAATTTTTACAATTCGAAACTCCTGTAGATTCAATATTACTTGCTTT TGAAATACGCATTTTTACTTAGAAGAAAATAAGAGTATATATGTTTTTTCTAATTTGTGTGTTTC TAAAATAATTATAAATATAAATATTATATATATATTTTTTTTTTTTTTTTAAATATATATTTTAA AATAATAAAATAAAAATAAAAAAAAAAAAACAATACATAAATATT Right flanking sequence: Indices 35970 -- 36469 TTACATAAATTACATTTCAATGTTTTTTTTCATAAAAGATAAATACTATATATATATTTTTTCAA TGATATAAATTATCATATCCTTGAAAGAATATATGATATATTTATAATTATGTAAGTTACAAGAA GCTAGAAATAATATATGTATTACACTTACGACTATTGATTATAAAATAATTAATTATTTCATTGA TATATTATTTTTATTGAATCTTAAAATTAATAAAAGAATTTAGAATATATTTTATAATATATATT TTTTCCACATGTTCTTTTGTATCTATCTTTTTCTATTATAAAATATAAAAAAATATGAAATAAAA AATATTTTCTTTTTAAATATACAATGTTAAAAATTACTAAATATAAGTAAATATATTTATATATA TATATATATATATATATATATATATATATATATATATATATATTTATTTATTTATTTATTCATAT GTGTAATATTTATATAATGATTAAATTTAAATCAAACCTACATAA Found at i:35966 original size:11 final size:11 Alignment explanation
Indices: 35935--35966 Score: 43 Period size: 11 Copynumber: 2.9 Consensus size: 11 35925 ATACATAAAT * * 35935 ATTTTTTTATT 1 ATTTTTTTTTA * 35946 ATTTTATTTTA 1 ATTTTTTTTTA 35957 ATTTTTTTTT 1 ATTTTTTTTT 35967 TTTTTACATA Statistics Matches: 17, Mismatches: 4, Indels: 0 0.81 0.19 0.00 Matches are distributed among these distances: 11 17 1.00 ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81 Consensus pattern (11 bp): ATTTTTTTTTA Left flanking sequence: Indices 35435 -- 35934 ATAAATGATACAAACAGAAAAAAATATATATATATAAATATATATTTATGTATGTATCTATGTAT CTATATATTTCTAATAAGGATATTTAAATTCATTAATTAAAAAAGAAAAAAATTCAATTATATAT TTTATATTTATATTATCATACCAATAAGGCTACGTATATTATTCCAAAAATCAATGTGATGTTTT TGGCATGGAAGGAAGTTAAGGAACGTTTCTTTTCATTTTTATTTTGTACTTCCATCAAAGAATAT TTAGAGCAATTTTTCGAATTGAAATTTTTACAATTCGAAACTCCTGTAGATTCAATATTACTTGC TTTTGAAATACGCATTTTTACTTAGAAGAAAATAAGAGTATATATGTTTTTTCTAATTTGTGTGT TTCTAAAATAATTATAAATATAAATATTATATATATATTTTTTTTTTTTTTTTAAATATATATTT TAAAATAATAAAATAAAAATAAAAAAAAAAAAACAATACATAAAT Right flanking sequence: Indices 35967 -- 36466 TTTTTACATAAATTACATTTCAATGTTTTTTTTCATAAAAGATAAATACTATATATATATTTTTT CAATGATATAAATTATCATATCCTTGAAAGAATATATGATATATTTATAATTATGTAAGTTACAA GAAGCTAGAAATAATATATGTATTACACTTACGACTATTGATTATAAAATAATTAATTATTTCAT TGATATATTATTTTTATTGAATCTTAAAATTAATAAAAGAATTTAGAATATATTTTATAATATAT ATTTTTTCCACATGTTCTTTTGTATCTATCTTTTTCTATTATAAAATATAAAAAAATATGAAATA AAAAATATTTTCTTTTTAAATATACAATGTTAAAAATTACTAAATATAAGTAAATATATTTATAT ATATATATATATATATATATATATATATATATATATATATATATATTTATTTATTTATTTATTCA TATGTGTAATATTTATATAATGATTAAATTTAAATCAAACCTACA Found at i:36218 original size:12 final size:12 Alignment explanation
Indices: 36203--36226 Score: 41 Period size: 12 Copynumber: 2.0 Consensus size: 12 36193 AATAAAAGAA 36203 TTTAGAATATAT 1 TTTAGAATATAT * 36215 TTTATAATATAT 1 TTTAGAATATAT 36227 ATTTTTTCCA Statistics Matches: 11, Mismatches: 1, Indels: 0 0.92 0.08 0.00 Matches are distributed among these distances: 12 11 1.00 ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54 Consensus pattern (12 bp): TTTAGAATATAT Left flanking sequence: Indices 35703 -- 36202 ATTTTTCGAATTGAAATTTTTACAATTCGAAACTCCTGTAGATTCAATATTACTTGCTTTTGAAA TACGCATTTTTACTTAGAAGAAAATAAGAGTATATATGTTTTTTCTAATTTGTGTGTTTCTAAAA TAATTATAAATATAAATATTATATATATATTTTTTTTTTTTTTTTAAATATATATTTTAAAATAA TAAAATAAAAATAAAAAAAAAAAAACAATACATAAATATTTTTTTATTATTTTATTTTAATTTTT TTTTTTTTTACATAAATTACATTTCAATGTTTTTTTTCATAAAAGATAAATACTATATATATATT TTTTCAATGATATAAATTATCATATCCTTGAAAGAATATATGATATATTTATAATTATGTAAGTT ACAAGAAGCTAGAAATAATATATGTATTACACTTACGACTATTGATTATAAAATAATTAATTATT TCATTGATATATTATTTTTATTGAATCTTAAAATTAATAAAAGAA Right flanking sequence: Indices 36227 -- 36726 ATTTTTTCCACATGTTCTTTTGTATCTATCTTTTTCTATTATAAAATATAAAAAAATATGAAATA AAAAATATTTTCTTTTTAAATATACAATGTTAAAAATTACTAAATATAAGTAAATATATTTATAT ATATATATATATATATATATATATATATATATATATATATATATATTTATTTATTTATTTATTCA TATGTGTAATATTTATATAATGATTAAATTTAAATCAAACCTACATAATATATTTCATGAAATAC TACATTAAATTATATTATATTAATTATATATTATATAAATGTATATTTTTTAACACATCTTTTCC TTGTATATTTTTTTTAATATAGATCAATTAATACTTTTTTTATAAATATATATTATAATTTTTAC ATTGAAAAAAAAAAATTATCAAAAATATTAAAGAAATTAAGAACTTATATTTTACAATTTGTATT TCTATAAAATTATAATACACGTTTTTCTTTATACTATGTTTTATA i:36518 original size:16 final size:17 Alignment explanation
Indices: 36497--36532 Score: 58 Period size: 16 Copynumber: 2.2 Consensus size: 17 36487 TACATTAAAT * 36497 TATATTATATTAAT-TA 1 TATATTATATAAATGTA 36513 TATATTATATAAATGTA 1 TATATTATATAAATGTA 36530 TAT 1 TAT 36533 TTTTTAACAC Statistics Matches: 18, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 16 13 0.72 17 5 0.28 ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53 Consensus pattern (17 bp): TATATTATATAAATGTA Left flanking sequence: Indices 35997 -- 36496 TTTCATAAAAGATAAATACTATATATATATTTTTTCAATGATATAAATTATCATATCCTTGAAAG AATATATGATATATTTATAATTATGTAAGTTACAAGAAGCTAGAAATAATATATGTATTACACTT ACGACTATTGATTATAAAATAATTAATTATTTCATTGATATATTATTTTTATTGAATCTTAAAAT TAATAAAAGAATTTAGAATATATTTTATAATATATATTTTTTCCACATGTTCTTTTGTATCTATC TTTTTCTATTATAAAATATAAAAAAATATGAAATAAAAAATATTTTCTTTTTAAATATACAATGT TAAAAATTACTAAATATAAGTAAATATATTTATATATATATATATATATATATATATATATATAT ATATATATATATATATTTATTTATTTATTTATTCATATGTGTAATATTTATATAATGATTAAATT TAAATCAAACCTACATAATATATTTCATGAAATACTACATTAAAT Right flanking sequence: Indices 36533 -- 37032 TTTTTAACACATCTTTTCCTTGTATATTTTTTTTAATATAGATCAATTAATACTTTTTTTATAAA TATATATTATAATTTTTACATTGAAAAAAAAAAATTATCAAAAATATTAAAGAAATTAAGAACTT ATATTTTACAATTTGTATTTCTATAAAATTATAATACACGTTTTTCTTTATACTATGTTTTATAA TTAACAAAAATTCCTATTATATATATTTTATAGTATTTTATAAAAATATATTAAAATTTTTGAAA TACAGTTATAATACATTAAAGTCCATATGTTTTTAACAAAACCACATATTATATATATATATATA TATATGATTATCAAATAATTAATAATAATAATTTTATATTTTACTATTATGTATTCAAAATTAAT TATATATAAATATATTATACTAAAAAAGAATTTTCTTGTATTTATTTCAATGAAATTATTAAAGA TACTATTCCATTTCTTGTTATATTTTATTACATATTATAATATTT Found at i:37134 original size:13 final size:13 Alignment explanation
Indices: 37116--37146 Score: 48 Period size: 13 Copynumber: 2.4 Consensus size: 13 37106 ACCACATTGT * 37116 TTTTTTTTTTTTA 1 TTTTTTTTTATTA 37129 TTTTTTTTTATTA 1 TTTTTTTTTATTA * 37142 TATTT 1 TTTTT 37147 ATCCTAACTT Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 13 16 1.00 ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87 Consensus pattern (13 bp): TTTTTTTTTATTA Left flanking sequence: Indices 36616 -- 37115 CATTGAAAAAAAAAAATTATCAAAAATATTAAAGAAATTAAGAACTTATATTTTACAATTTGTAT TTCTATAAAATTATAATACACGTTTTTCTTTATACTATGTTTTATAATTAACAAAAATTCCTATT ATATATATTTTATAGTATTTTATAAAAATATATTAAAATTTTTGAAATACAGTTATAATACATTA AAGTCCATATGTTTTTAACAAAACCACATATTATATATATATATATATATATGATTATCAAATAA TTAATAATAATAATTTTATATTTTACTATTATGTATTCAAAATTAATTATATATAAATATATTAT ACTAAAAAAGAATTTTCTTGTATTTATTTCAATGAAATTATTAAAGATACTATTCCATTTCTTGT TATATTTTATTACATATTATAATATTTCACATATTTTACATTGGTATCATATTTTTTTATTTCTC ATCAAAATACTTTCGTATTTTAAATATTTTAATTAACCACATTGT Right flanking sequence: Indices 37147 -- 37646 ATCCTAACTTAAAATATAAACAAATAGAAAACAATATATGAAATAAATACGCAAGGAATCAAAAA AAAAAAAAAATAAAATAAAATAATAATAATTTTATATTTTATTATTATGTTTACAAAATTAATTA TACATCAATGAAATTATATTAAATAATATTTTTCCTTACACTTATTTCAATGAAATCATATTAAA TAATATATTCCTTGTACTTATTTCAATGAATTCATTTAAGATACTGTTTCATTTCTTGTTATATT TTATTACATAGTATAATAGTTCATATATTTTACGTTGGTATCATTTTTTTCTTTTCATTTTCATT GAAATATTTTCATATATTAAACATTTTAATTAACAATAATATTTTTTAATTTTTTATATTTATCC TAACTTAATATGTAAACAAATAAAAAAATATATATGAAAAAAGTACTCAAGGAATAAAAAAAATA AAATAAAATAATAAAAATAATAACAATAATAATAATAATAAACAA Found at i:37135 original size:15 final size:15 Alignment explanation
Indices: 37115--37146 Score: 50 Period size: 15 Copynumber: 2.1 Consensus size: 15 37105 AACCACATTG * * 37115 TTTTTTTTTTTTTAT 1 TTTTTTTTATTATAT 37130 TTTTTTTTATTATAT 1 TTTTTTTTATTATAT 37145 TT 1 TT 37147 ATCCTAACTT Statistics Matches: 15, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 15 15 1.00 ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88 Consensus pattern (15 bp): TTTTTTTTATTATAT Left flanking sequence: Indices 36615 -- 37114 ACATTGAAAAAAAAAAATTATCAAAAATATTAAAGAAATTAAGAACTTATATTTTACAATTTGTA TTTCTATAAAATTATAATACACGTTTTTCTTTATACTATGTTTTATAATTAACAAAAATTCCTAT TATATATATTTTATAGTATTTTATAAAAATATATTAAAATTTTTGAAATACAGTTATAATACATT AAAGTCCATATGTTTTTAACAAAACCACATATTATATATATATATATATATATGATTATCAAATA ATTAATAATAATAATTTTATATTTTACTATTATGTATTCAAAATTAATTATATATAAATATATTA TACTAAAAAAGAATTTTCTTGTATTTATTTCAATGAAATTATTAAAGATACTATTCCATTTCTTG TTATATTTTATTACATATTATAATATTTCACATATTTTACATTGGTATCATATTTTTTTATTTCT CATCAAAATACTTTCGTATTTTAAATATTTTAATTAACCACATTG Right flanking sequence: Indices 37147 -- 37646 ATCCTAACTTAAAATATAAACAAATAGAAAACAATATATGAAATAAATACGCAAGGAATCAAAAA AAAAAAAAAATAAAATAAAATAATAATAATTTTATATTTTATTATTATGTTTACAAAATTAATTA TACATCAATGAAATTATATTAAATAATATTTTTCCTTACACTTATTTCAATGAAATCATATTAAA TAATATATTCCTTGTACTTATTTCAATGAATTCATTTAAGATACTGTTTCATTTCTTGTTATATT TTATTACATAGTATAATAGTTCATATATTTTACGTTGGTATCATTTTTTTCTTTTCATTTTCATT GAAATATTTTCATATATTAAACATTTTAATTAACAATAATATTTTTTAATTTTTTATATTTATCC TAACTTAATATGTAAACAAATAAAAAAATATATATGAAAAAAGTACTCAAGGAATAAAAAAAATA AAATAAAATAATAAAAATAATAACAATAATAATAATAATAAACAA Found at i:37231 original size:13 final size:13 Alignment explanation
Indices: 37210--37237 Score: 42 Period size: 13 Copynumber: 2.2 Consensus size: 13 37200 AGGAATCAAA 37210 AAAAAAAAAAAAT 1 AAAAAAAAAAAAT * * 37223 AAAATAAAATAAT 1 AAAAAAAAAAAAT 37236 AA 1 AA 37238 TAATTTTATA Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14 Consensus pattern (13 bp): AAAAAAAAAAAAT Left flanking sequence: Indices 36710 -- 37209 TTATACTATGTTTTATAATTAACAAAAATTCCTATTATATATATTTTATAGTATTTTATAAAAAT ATATTAAAATTTTTGAAATACAGTTATAATACATTAAAGTCCATATGTTTTTAACAAAACCACAT ATTATATATATATATATATATATGATTATCAAATAATTAATAATAATAATTTTATATTTTACTAT TATGTATTCAAAATTAATTATATATAAATATATTATACTAAAAAAGAATTTTCTTGTATTTATTT CAATGAAATTATTAAAGATACTATTCCATTTCTTGTTATATTTTATTACATATTATAATATTTCA CATATTTTACATTGGTATCATATTTTTTTATTTCTCATCAAAATACTTTCGTATTTTAAATATTT TAATTAACCACATTGTTTTTTTTTTTTTATTTTTTTTTATTATATTTATCCTAACTTAAAATATA AACAAATAGAAAACAATATATGAAATAAATACGCAAGGAATCAAA Right flanking sequence: Indices 37238 -- 37737 TAATTTTATATTTTATTATTATGTTTACAAAATTAATTATACATCAATGAAATTATATTAAATAA TATTTTTCCTTACACTTATTTCAATGAAATCATATTAAATAATATATTCCTTGTACTTATTTCAA TGAATTCATTTAAGATACTGTTTCATTTCTTGTTATATTTTATTACATAGTATAATAGTTCATAT ATTTTACGTTGGTATCATTTTTTTCTTTTCATTTTCATTGAAATATTTTCATATATTAAACATTT TAATTAACAATAATATTTTTTAATTTTTTATATTTATCCTAACTTAATATGTAAACAAATAAAAA AATATATATGAAAAAAGTACTCAAGGAATAAAAAAAATAAAATAAAATAATAAAAATAATAACAA TAATAATAATAATAAACAAATAAATAAATAGGAAAATAAAAAAAATAAGAAATACAAAAGAGTTA TTTTATAATATAAAACAAATATATATAATATGATATTTATAATAT Found at i:37365 original size:41 final size:42 Alignment explanation
Indices: 37281--37380 Score: 151 Period size: 41 Copynumber: 2.4 Consensus size: 42 37271 TAATTATACA * * 37281 TCAATGAAATTATATTAAATAATATTTTTCCTTACACTTATT 1 TCAATGAAATCATATTAAATAATATTATTCCTTACACTTATT ** 37323 TCAATGAAATCATATTAAATAATA-TATTCCTTGTACTTATT 1 TCAATGAAATCATATTAAATAATATTATTCCTTACACTTATT * 37364 TCAATGAATTCAT-TTAA 1 TCAATGAAATCATATTAA 37381 GATACTGTTT Statistics Matches: 53, Mismatches: 5, Indels: 2 0.88 0.08 0.03 Matches are distributed among these distances: 40 4 0.08 41 26 0.49 42 23 0.43 ACGTcount: A:0.39, C:0.12, G:0.04, T:0.45 Consensus pattern (42 bp): TCAATGAAATCATATTAAATAATATTATTCCTTACACTTATT Left flanking sequence: Indices 36781 -- 37280 AAATTTTTGAAATACAGTTATAATACATTAAAGTCCATATGTTTTTAACAAAACCACATATTATA TATATATATATATATATGATTATCAAATAATTAATAATAATAATTTTATATTTTACTATTATGTA TTCAAAATTAATTATATATAAATATATTATACTAAAAAAGAATTTTCTTGTATTTATTTCAATGA AATTATTAAAGATACTATTCCATTTCTTGTTATATTTTATTACATATTATAATATTTCACATATT TTACATTGGTATCATATTTTTTTATTTCTCATCAAAATACTTTCGTATTTTAAATATTTTAATTA ACCACATTGTTTTTTTTTTTTTATTTTTTTTTATTATATTTATCCTAACTTAAAATATAAACAAA TAGAAAACAATATATGAAATAAATACGCAAGGAATCAAAAAAAAAAAAAAATAAAATAAAATAAT AATAATTTTATATTTTATTATTATGTTTACAAAATTAATTATACA Right flanking sequence: Indices 37381 -- 37880 GATACTGTTTCATTTCTTGTTATATTTTATTACATAGTATAATAGTTCATATATTTTACGTTGGT ATCATTTTTTTCTTTTCATTTTCATTGAAATATTTTCATATATTAAACATTTTAATTAACAATAA TATTTTTTAATTTTTTATATTTATCCTAACTTAATATGTAAACAAATAAAAAAATATATATGAAA AAAGTACTCAAGGAATAAAAAAAATAAAATAAAATAATAAAAATAATAACAATAATAATAATAAT AAACAAATAAATAAATAGGAAAATAAAAAAAATAAGAAATACAAAAGAGTTATTTTATAATATAA AACAAATATATATAATATGATATTTATAATATAAATTTTTATTGTTAAAACATATTACGAGAAAA AAAAAATACTACATATATATTATTACATAAATATTTGTTAGTACAATTTATTATACTTTTTTTTT GAATATCTTATTTCTTTCAAACTTTTTATAAATAAAATATTAATC Found at i:37623 original size:12 final size:12 Alignment explanation
Indices: 37589--37679 Score: 68 Period size: 12 Copynumber: 7.8 Consensus size: 12 37579 GTACTCAAGG * 37589 AATAAAAAAAAT 1 AATAATAAAAAT 37601 AA-AAT-AAAAT 1 AATAATAAAAAT * * 37611 AATAAAAATAAT 1 AATAATAAAAAT * * 37623 AACAATAATAAT 1 AATAATAAAAAT * 37635 AATAATAAACA- 1 AATAATAAAAAT * * 37646 AATAAATAAATAG 1 AAT-AATAAAAAT * * * 37659 GAAAATAAAAAA 1 AATAATAAAAAT * 37671 AATAAGAAA 1 AATAATAAA 37680 TACAAAAGAG Statistics Matches: 59, Mismatches: 16, Indels: 8 0.71 0.19 0.10 Matches are distributed among these distances: 10 7 0.12 11 7 0.12 12 44 0.75 13 1 0.02 ACGTcount: A:0.76, C:0.02, G:0.03, T:0.19 Consensus pattern (12 bp): AATAATAAAAAT Left flanking sequence: Indices 37089 -- 37588 TTTAAATATTTTAATTAACCACATTGTTTTTTTTTTTTTATTTTTTTTTATTATATTTATCCTAA CTTAAAATATAAACAAATAGAAAACAATATATGAAATAAATACGCAAGGAATCAAAAAAAAAAAA AAATAAAATAAAATAATAATAATTTTATATTTTATTATTATGTTTACAAAATTAATTATACATCA ATGAAATTATATTAAATAATATTTTTCCTTACACTTATTTCAATGAAATCATATTAAATAATATA TTCCTTGTACTTATTTCAATGAATTCATTTAAGATACTGTTTCATTTCTTGTTATATTTTATTAC ATAGTATAATAGTTCATATATTTTACGTTGGTATCATTTTTTTCTTTTCATTTTCATTGAAATAT TTTCATATATTAAACATTTTAATTAACAATAATATTTTTTAATTTTTTATATTTATCCTAACTTA ATATGTAAACAAATAAAAAAATATATATGAAAAAAGTACTCAAGG Right flanking sequence: Indices 37680 -- 38179 TACAAAAGAGTTATTTTATAATATAAAACAAATATATATAATATGATATTTATAATATAAATTTT TATTGTTAAAACATATTACGAGAAAAAAAAAATACTACATATATATTATTACATAAATATTTGTT AGTACAATTTATTATACTTTTTTTTTGAATATCTTATTTCTTTCAAACTTTTTATAAATAAAATA TTAATCCTAATAATGATTTTTTTTTTTTTTTTTTTTTTATTAATTACCTTAATATAATATTTCTT TCAGTTCTATAACATTTTTAATAACAAAAAAAAAAAAAAAAAAAAATTGATATTGGTTCCATATG TTTTTAACATTTGTTTATAAGATTTAAAAATTCGTTAGTTTACTTCAATATAAATATATTCTACA GATTTGCGATTTTCTATAAAAATATAATTGTACAAATTTTTATATCTTACATTTTTCGAATTCTG TTAATTAATTCTAAATATAAATGATATATGTGTATATAAATATAT Found at i:37686 original size:17 final size:17 Alignment explanation
Indices: 37592--37679 Score: 76 Period size: 17 Copynumber: 5.2 Consensus size: 17 37582 CTCAAGGAAT * * * 37592 AAAAAAAATAAAATAAA 1 AAAATAAAAAAAATAAG * * * 37609 ATAATAAAAATAATAAC 1 AAAATAAAAAAAATAAG * * * 37626 AATAATAATAATAATAAA 1 AA-AATAAAAAAAATAAG * * * 37644 CAAAT-AAATAAATAGG 1 AAAATAAAAAAAATAAG 37660 AAAATAAAAAAAATAAG 1 AAAATAAAAAAAATAAG 37677 AAA 1 AAA 37680 TACAAAAGAG Statistics Matches: 52, Mismatches: 17, Indels: 4 0.71 0.23 0.05 Matches are distributed among these distances: 16 10 0.19 17 28 0.54 18 14 0.27 ACGTcount: A:0.76, C:0.02, G:0.03, T:0.18 Consensus pattern (17 bp): AAAATAAAAAAAATAAG Left flanking sequence: Indices 37092 -- 37591 AAATATTTTAATTAACCACATTGTTTTTTTTTTTTTATTTTTTTTTATTATATTTATCCTAACTT AAAATATAAACAAATAGAAAACAATATATGAAATAAATACGCAAGGAATCAAAAAAAAAAAAAAA TAAAATAAAATAATAATAATTTTATATTTTATTATTATGTTTACAAAATTAATTATACATCAATG AAATTATATTAAATAATATTTTTCCTTACACTTATTTCAATGAAATCATATTAAATAATATATTC CTTGTACTTATTTCAATGAATTCATTTAAGATACTGTTTCATTTCTTGTTATATTTTATTACATA GTATAATAGTTCATATATTTTACGTTGGTATCATTTTTTTCTTTTCATTTTCATTGAAATATTTT CATATATTAAACATTTTAATTAACAATAATATTTTTTAATTTTTTATATTTATCCTAACTTAATA TGTAAACAAATAAAAAAATATATATGAAAAAAGTACTCAAGGAAT Right flanking sequence: Indices 37680 -- 38179 TACAAAAGAGTTATTTTATAATATAAAACAAATATATATAATATGATATTTATAATATAAATTTT TATTGTTAAAACATATTACGAGAAAAAAAAAATACTACATATATATTATTACATAAATATTTGTT AGTACAATTTATTATACTTTTTTTTTGAATATCTTATTTCTTTCAAACTTTTTATAAATAAAATA TTAATCCTAATAATGATTTTTTTTTTTTTTTTTTTTTTATTAATTACCTTAATATAATATTTCTT TCAGTTCTATAACATTTTTAATAACAAAAAAAAAAAAAAAAAAAAATTGATATTGGTTCCATATG TTTTTAACATTTGTTTATAAGATTTAAAAATTCGTTAGTTTACTTCAATATAAATATATTCTACA GATTTGCGATTTTCTATAAAAATATAATTGTACAAATTTTTATATCTTACATTTTTCGAATTCTG TTAATTAATTCTAAATATAAATGATATATGTGTATATAAATATAT Found at i:38029 original size:13 final size:13 Alignment explanation
Indices: 37999--38029 Score: 41 Period size: 13 Copynumber: 2.4 Consensus size: 13 37989 ATATTGGTTC * * 37999 CATATGTTTTTAA 1 CATTTGTTTATAA 38012 CATTTGTTTATAA 1 CATTTGTTTATAA * 38025 GATTT 1 CATTT 38030 AAAAATTCGT Statistics Matches: 15, Mismatches: 3, Indels: 0 0.83 0.17 0.00 Matches are distributed among these distances: 13 15 1.00 ACGTcount: A:0.29, C:0.06, G:0.10, T:0.55 Consensus pattern (13 bp): CATTTGTTTATAA Left flanking sequence: Indices 37499 -- 37998 AATTAACAATAATATTTTTTAATTTTTTATATTTATCCTAACTTAATATGTAAACAAATAAAAAA ATATATATGAAAAAAGTACTCAAGGAATAAAAAAAATAAAATAAAATAATAAAAATAATAACAAT AATAATAATAATAAACAAATAAATAAATAGGAAAATAAAAAAAATAAGAAATACAAAAGAGTTAT TTTATAATATAAAACAAATATATATAATATGATATTTATAATATAAATTTTTATTGTTAAAACAT ATTACGAGAAAAAAAAAATACTACATATATATTATTACATAAATATTTGTTAGTACAATTTATTA TACTTTTTTTTTGAATATCTTATTTCTTTCAAACTTTTTATAAATAAAATATTAATCCTAATAAT GATTTTTTTTTTTTTTTTTTTTTTATTAATTACCTTAATATAATATTTCTTTCAGTTCTATAACA TTTTTAATAACAAAAAAAAAAAAAAAAAAAAATTGATATTGGTTC Right flanking sequence: Indices 38030 -- 38529 AAAAATTCGTTAGTTTACTTCAATATAAATATATTCTACAGATTTGCGATTTTCTATAAAAATAT AATTGTACAAATTTTTATATCTTACATTTTTCGAATTCTGTTAATTAATTCTAAATATAAATGAT ATATGTGTATATAAATATATATATATGAACTATTATTTTAAAATGGTGAAATAGAATATATGTAA TGAATATATTTAAAACAGGAAATATTTTTAATTTATTTTTTTTTTTTTTTATGTATAATAAAACG TAATATTATATTTCTAAAACTATCTCCTTAAATGTTTTTCATTATAACTATTTATTTTAAAGAAT AATATAATAAAAAAATAAAATAAAACAAAATGAAAAAAAGAAAAATATATAGAATATAATTATAA TAAGAAAAATTATGTTAAATTAAATATTTGTCATACTTTAGAGTTATTCGTCATGTAACATTATG GGAAATAAATATCGATCAATCCGTGTTAAAAACTAATAGCCGCAT Found at i:38247 original size:36 final size:41 Alignment explanation
Indices: 38173--38248 Score: 96 Period size: 41 Copynumber: 2.0 Consensus size: 41 38163 TGTGTATATA ** 38173 AATATATATATATGAACTATTATTTTAAAATGGTGAAATAG 1 AATATATATATATGAACTATTATTTTAAAACAGTGAAATAG * 38214 AATATATGTA-ATGAA-TA-TA-TTTAAAACAG-GAAATA 1 AATATATATATATGAACTATTATTTTAAAACAGTGAAATA 38249 TTTTTAATTT Statistics Matches: 32, Mismatches: 3, Indels: 5 0.80 0.07 0.12 Matches are distributed among these distances: 36 6 0.19 37 8 0.25 38 2 0.06 39 2 0.06 40 5 0.16 41 9 0.28 ACGTcount: A:0.50, C:0.03, G:0.12, T:0.36 Consensus pattern (41 bp): AATATATATATATGAACTATTATTTTAAAACAGTGAAATAG Left flanking sequence: Indices 37673 -- 38172 TAAGAAATACAAAAGAGTTATTTTATAATATAAAACAAATATATATAATATGATATTTATAATAT AAATTTTTATTGTTAAAACATATTACGAGAAAAAAAAAATACTACATATATATTATTACATAAAT ATTTGTTAGTACAATTTATTATACTTTTTTTTTGAATATCTTATTTCTTTCAAACTTTTTATAAA TAAAATATTAATCCTAATAATGATTTTTTTTTTTTTTTTTTTTTTATTAATTACCTTAATATAAT ATTTCTTTCAGTTCTATAACATTTTTAATAACAAAAAAAAAAAAAAAAAAAAATTGATATTGGTT CCATATGTTTTTAACATTTGTTTATAAGATTTAAAAATTCGTTAGTTTACTTCAATATAAATATA TTCTACAGATTTGCGATTTTCTATAAAAATATAATTGTACAAATTTTTATATCTTACATTTTTCG AATTCTGTTAATTAATTCTAAATATAAATGATATATGTGTATATA Right flanking sequence: Indices 38249 -- 38748 TTTTTAATTTATTTTTTTTTTTTTTTATGTATAATAAAACGTAATATTATATTTCTAAAACTATC TCCTTAAATGTTTTTCATTATAACTATTTATTTTAAAGAATAATATAATAAAAAAATAAAATAAA ACAAAATGAAAAAAAGAAAAATATATAGAATATAATTATAATAAGAAAAATTATGTTAAATTAAA TATTTGTCATACTTTAGAGTTATTCGTCATGTAACATTATGGGAAATAAATATCGATCAATCCGT GTTAAAAACTAATAGCCGCATAGATATTATTAAATTTATATTTTCATATTATATATATGGGTTTT ATATTTAATAATAATTTTTTATTATGTATAATAAGAAAAATGTGTTTTTGTATTTAAATATATAA TACAAATATGTCTATATATATATATATATATATATATATATATATATATATATATGAAAGAACAA TAAGTGTAATTTAATTTTTCATTGAATTTCAAATGTTTCATTTGT Found at i:38263 original size:11 final size:11 Alignment explanation
Indices: 38247--38275 Score: 37 Period size: 10 Copynumber: 2.7 Consensus size: 11 38237 AAACAGGAAA 38247 TATTTTTAATT 1 TATTTTTAATT * 38258 TATTTTT-TTT 1 TATTTTTAATT * 38268 TTTTTTTA 1 TATTTTTA 38276 TGTATAATAA Statistics Matches: 15, Mismatches: 2, Indels: 2 0.79 0.11 0.11 Matches are distributed among these distances: 10 8 0.53 11 7 0.47 ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83 Consensus pattern (11 bp): TATTTTTAATT Left flanking sequence: Indices 37747 -- 38246 TTGTTAAAACATATTACGAGAAAAAAAAAATACTACATATATATTATTACATAAATATTTGTTAG TACAATTTATTATACTTTTTTTTTGAATATCTTATTTCTTTCAAACTTTTTATAAATAAAATATT AATCCTAATAATGATTTTTTTTTTTTTTTTTTTTTTATTAATTACCTTAATATAATATTTCTTTC AGTTCTATAACATTTTTAATAACAAAAAAAAAAAAAAAAAAAAATTGATATTGGTTCCATATGTT TTTAACATTTGTTTATAAGATTTAAAAATTCGTTAGTTTACTTCAATATAAATATATTCTACAGA TTTGCGATTTTCTATAAAAATATAATTGTACAAATTTTTATATCTTACATTTTTCGAATTCTGTT AATTAATTCTAAATATAAATGATATATGTGTATATAAATATATATATATGAACTATTATTTTAAA ATGGTGAAATAGAATATATGTAATGAATATATTTAAAACAGGAAA Right flanking sequence: Indices 38276 -- 38775 TGTATAATAAAACGTAATATTATATTTCTAAAACTATCTCCTTAAATGTTTTTCATTATAACTAT TTATTTTAAAGAATAATATAATAAAAAAATAAAATAAAACAAAATGAAAAAAAGAAAAATATATA GAATATAATTATAATAAGAAAAATTATGTTAAATTAAATATTTGTCATACTTTAGAGTTATTCGT CATGTAACATTATGGGAAATAAATATCGATCAATCCGTGTTAAAAACTAATAGCCGCATAGATAT TATTAAATTTATATTTTCATATTATATATATGGGTTTTATATTTAATAATAATTTTTTATTATGT ATAATAAGAAAAATGTGTTTTTGTATTTAAATATATAATACAAATATGTCTATATATATATATAT ATATATATATATATATATATATATATATGAAAGAACAATAAGTGTAATTTAATTTTTCATTGAAT TTCAAATGTTTCATTTGTTCATTTTAAGGATATAGCAACAAAAAT Found at i:38424 original size:29 final size:29 Alignment explanation
Indices: 38353--38429 Score: 82 Period size: 29 Copynumber: 2.7 Consensus size: 29 38343 ATTTTAAAGA 38353 ATAA-TATAATAA-AAAAATAAAATAAAAC 1 ATAATTATAATAAGAAAAAT-AAATAAAAC * * * * * * * 38381 AAAATGAAAAAAAGAAAAATATATAGAAT 1 ATAATTATAATAAGAAAAATAAATAAAAC 38410 ATAATTATAATAAGAAAAAT 1 ATAATTATAATAAGAAAAAT 38430 TATGTTAAAT Statistics Matches: 36, Mismatches: 11, Indels: 3 0.72 0.22 0.06 Matches are distributed among these distances: 28 3 0.08 29 27 0.75 30 6 0.17 ACGTcount: A:0.71, C:0.01, G:0.05, T:0.22 Consensus pattern (29 bp): ATAATTATAATAAGAAAAATAAATAAAAC Left flanking sequence: Indices 37853 -- 38352 CAAACTTTTTATAAATAAAATATTAATCCTAATAATGATTTTTTTTTTTTTTTTTTTTTTATTAA TTACCTTAATATAATATTTCTTTCAGTTCTATAACATTTTTAATAACAAAAAAAAAAAAAAAAAA AAATTGATATTGGTTCCATATGTTTTTAACATTTGTTTATAAGATTTAAAAATTCGTTAGTTTAC TTCAATATAAATATATTCTACAGATTTGCGATTTTCTATAAAAATATAATTGTACAAATTTTTAT ATCTTACATTTTTCGAATTCTGTTAATTAATTCTAAATATAAATGATATATGTGTATATAAATAT ATATATATGAACTATTATTTTAAAATGGTGAAATAGAATATATGTAATGAATATATTTAAAACAG GAAATATTTTTAATTTATTTTTTTTTTTTTTTATGTATAATAAAACGTAATATTATATTTCTAAA ACTATCTCCTTAAATGTTTTTCATTATAACTATTTATTTTAAAGA Right flanking sequence: Indices 38430 -- 38929 TATGTTAAATTAAATATTTGTCATACTTTAGAGTTATTCGTCATGTAACATTATGGGAAATAAAT ATCGATCAATCCGTGTTAAAAACTAATAGCCGCATAGATATTATTAAATTTATATTTTCATATTA TATATATGGGTTTTATATTTAATAATAATTTTTTATTATGTATAATAAGAAAAATGTGTTTTTGT ATTTAAATATATAATACAAATATGTCTATATATATATATATATATATATATATATATATATATAT ATATGAAAGAACAATAAGTGTAATTTAATTTTTCATTGAATTTCAAATGTTTCATTTGTTCATTT TAAGGATATAGCAACAAAAATATATATATTAATGAAAATATAAATGAAAATATAACTTCTGTATA ATTAAAATAAAAACCATATAAAGAGAAAAAAATATACTAAGAAAGAATATATAAAGAGAAATATT TTTATTAACAAATAACTTTACGAAAAAATTTTATATGTAATTTTC Found at i:38432 original size:15 final size:14 Alignment explanation
Indices: 38349--38429 Score: 65 Period size: 15 Copynumber: 5.6 Consensus size: 14 38339 ATTTATTTTA * 38349 AAGAATAATATAAT 1 AAGAAAAATATAAT * 38363 AA-AAAAATAAAAT 1 AAGAAAAATATAAT * * * 38376 AAAACAAAATGAAAAA 1 AAGA-AAAAT-ATAAT * 38392 AAGAAAAATATATAG 1 AAGAAAAATATA-AT * * * 38407 AATATAATTATAAT 1 AAGAAAAATATAAT 38421 AAGAAAAAT 1 AAGAAAAAT 38430 TATGTTAAAT Statistics Matches: 50, Mismatches: 13, Indels: 8 0.70 0.18 0.11 Matches are distributed among these distances: 13 11 0.22 14 12 0.24 15 20 0.40 16 7 0.14 ACGTcount: A:0.72, C:0.01, G:0.06, T:0.21 Consensus pattern (14 bp): AAGAAAAATATAAT Left flanking sequence: Indices 37849 -- 38348 CTTTCAAACTTTTTATAAATAAAATATTAATCCTAATAATGATTTTTTTTTTTTTTTTTTTTTTA TTAATTACCTTAATATAATATTTCTTTCAGTTCTATAACATTTTTAATAACAAAAAAAAAAAAAA AAAAAAATTGATATTGGTTCCATATGTTTTTAACATTTGTTTATAAGATTTAAAAATTCGTTAGT TTACTTCAATATAAATATATTCTACAGATTTGCGATTTTCTATAAAAATATAATTGTACAAATTT TTATATCTTACATTTTTCGAATTCTGTTAATTAATTCTAAATATAAATGATATATGTGTATATAA ATATATATATATGAACTATTATTTTAAAATGGTGAAATAGAATATATGTAATGAATATATTTAAA ACAGGAAATATTTTTAATTTATTTTTTTTTTTTTTTATGTATAATAAAACGTAATATTATATTTC TAAAACTATCTCCTTAAATGTTTTTCATTATAACTATTTATTTTA Right flanking sequence: Indices 38430 -- 38929 TATGTTAAATTAAATATTTGTCATACTTTAGAGTTATTCGTCATGTAACATTATGGGAAATAAAT ATCGATCAATCCGTGTTAAAAACTAATAGCCGCATAGATATTATTAAATTTATATTTTCATATTA TATATATGGGTTTTATATTTAATAATAATTTTTTATTATGTATAATAAGAAAAATGTGTTTTTGT ATTTAAATATATAATACAAATATGTCTATATATATATATATATATATATATATATATATATATAT ATATGAAAGAACAATAAGTGTAATTTAATTTTTCATTGAATTTCAAATGTTTCATTTGTTCATTT TAAGGATATAGCAACAAAAATATATATATTAATGAAAATATAAATGAAAATATAACTTCTGTATA ATTAAAATAAAAACCATATAAAGAGAAAAAAATATACTAAGAAAGAATATATAAAGAGAAATATT TTTATTAACAAATAACTTTACGAAAAAATTTTATATGTAATTTTC Found at