TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 102845780 P. falciparum 3D7 GENOMIC chr6 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 1418244 ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40 Found at i: i:293403 original size:11 final size:11 Alignment explanation
Indices: 293376--293404 Score: 35 Period size: 11 Copynumber: 2.5 Consensus size: 11 293366 AAAAGTTAAA 293376 ATATGTATATGT 1 ATATG-ATATGT * * 293388 TTATGATATTT 1 ATATGATATGT 293399 ATATGA 1 ATATGA 293405 ATACAATTTT Statistics Matches: 14, Mismatches: 3, Indels: 1 0.78 0.17 0.06 Matches are distributed among these distances: 11 10 0.71 12 4 0.29 ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52 Consensus pattern (11 bp): ATATGATATGT Left flanking sequence: Indices 292876 -- 293375 TGTGACCACAAATGGATATGATATGTATTTAAGGAAGAAGATTATTTTATTTTATTTGTATATAA TATTTATTATATATTTTGACCTCTTGATTGTTTTTATCGTATTATATAAATATATGTAATATAGA TATAGATACCTTTTAATTATTACAGAAATATTTGTATAGATAAGAAAGGACTTTTAAAAGAAAAA TTATTTTGCGTACATATTTACAATAAAAAATAATAAAAAGGAAAAAAAGAAATAATAAAAAATAA ATAATAAAAAATAAATAAGCAAACAAATAAATGAGAAACAAATAAATAAGCAAACTAATAAATGA GCAAACAAATAAATAAGCAAACTAATAAATGAGCAAACAAATAAATGAGCAAACAAACAAATAAG CAAATATTCTTCTAAAGGCGTACATCTACATTTATGTACATATCTTATGATAAATGAATAAAAAA CATCATGATGACATATAATCAAATACAAAGATAATAAAAGTTAAA Right flanking sequence: Indices 293405 -- 293904 ATACAATTTTACGTATATATATCTAAAATTATACACATATATATATATTTATATATATATATATA TAACATCTTGTTATGCAAATGTTTTTCCTCAACAAAATAGAACCGGTCATATAATAACAAAAGAA AAGAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTACGTACATCGTTTATGTGAT AAATTTTATGTTTGTACCAGTGATATAATTTAACACGATAAAGGAAAATAAAATAAAAAAAAATA TATATATATATATATATATATATATAATATAATATATTTATAATATATTTGTAATATATTTATAA TATATATATTATTATATGTTTATATATTAATTATATTTTTTCGGAACGTATCAAAACGACGAAAA ACATATAATATATATATATATATACTTAAATAAAAATCACCAAAAAAAAAAAAAAAAAAAAAAAA ATGAGTAAAAATAAAAAGGGAAAAAAGAAGGAAGATCTCGATGCT Found at i:293706 original size:11 final size:11 Alignment explanation
Indices: 293661--293769 Score: 100 Period size: 11 Copynumber: 9.8 Consensus size: 11 293651 AATAAAAAAA * 293661 AATATATATAT 1 AATATATTTAT * 293672 -ATATATATAT 1 AATATATTTAT * 293682 ATATATATAATAT 1 A-ATATAT-TTAT 293695 AATATATTTAT 1 AATATATTTAT * 293706 AATATATTTGT 1 AATATATTTAT 293717 AATATATTTAT 1 AATATATTTAT * 293728 AATATATATATT 1 AATATATTTA-T * * 293740 ATTATATGT-T 1 AATATATTTAT * * 293750 TATATATTAAT 1 AATATATTTAT * * 293761 TATATTTTT 1 AATATATTT 293770 TCGGAACGTA Statistics Matches: 81, Mismatches: 12, Indels: 10 0.79 0.12 0.10 Matches are distributed among these distances: 10 16 0.20 11 40 0.49 12 20 0.25 13 5 0.06 ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54 Consensus pattern (11 bp): AATATATTTAT Left flanking sequence: Indices 293161 -- 293660 AATAAATGAGAAACAAATAAATAAGCAAACTAATAAATGAGCAAACAAATAAATAAGCAAACTAA TAAATGAGCAAACAAATAAATGAGCAAACAAACAAATAAGCAAATATTCTTCTAAAGGCGTACAT CTACATTTATGTACATATCTTATGATAAATGAATAAAAAACATCATGATGACATATAATCAAATA CAAAGATAATAAAAGTTAAAATATGTATATGTTTATGATATTTATATGAATACAATTTTACGTAT ATATATCTAAAATTATACACATATATATATATTTATATATATATATATATAACATCTTGTTATGC AAATGTTTTTCCTCAACAAAATAGAACCGGTCATATAATAACAAAAGAAAAGAAAAGAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAGTACGTACATCGTTTATGTGATAAATTTTATGTTTGTA CCAGTGATATAATTTAACACGATAAAGGAAAATAAAATAAAAAAA Right flanking sequence: Indices 293770 -- 294269 TCGGAACGTATCAAAACGACGAAAAACATATAATATATATATATATATACTTAAATAAAAATCAC CAAAAAAAAAAAAAAAAAAAAAAAAATGAGTAAAAATAAAAAGGGAAAAAAGAAGGAAGATCTCG ATGCTATTCTGGCCGAATTAGGAATAGAAGAAAAAAGAGAAGATGACGTAAAAGCAAATGAAAAC GAGGAAAATGAACCTACCAAAATGTCCAAGTCCAAAAAGAAAAAGGAAAAACTCAAACAAAAAAA AGAACAAATGAAAAATAAAGAAGATGATGAGAAGGATGATCAAAAAGGTATAGATGGTGAAAAAG ATACAGACCAAAAAAAAGATCAGGATGACCAAAAAGATGATGATAACCAAAATGAAGCGGATAAC CAAAATGAAGCAGATAATCAAAATGAAGGTGAAAACCAAAAAAAGAAAAAAAACAAAAAGAAAAA AGATAAAGAAAAAAAAGCTGGTGGAGCAGCAGGAGCAGCTACAGG Found at i:293762 original size:22 final size:23 Alignment explanation
Indices: 293662--293764 Score: 111 Period size: 22 Copynumber: 4.7 Consensus size: 23 293652 ATAAAAAAAA * 293662 ATATATAT-A-TAT-ATATATAT 1 ATATATATAATTATAATATATTT 293682 ATATATATAA-TATAATATATTT 1 ATATATATAATTATAATATATTT * * 293704 ATA-ATATATTTGTAATATATTT 1 ATATATATAATTATAATATATTT * * 293726 ATAATATATATATTATTATATGTTT 1 AT-ATATATA-ATTATAATATATTT 293751 ATATAT-TAATTATA 1 ATATATATAATTATA 293765 TTTTTTCGGA Statistics Matches: 69, Mismatches: 8, Indels: 10 0.79 0.09 0.11 Matches are distributed among these distances: 20 8 0.12 21 9 0.13 22 28 0.41 23 3 0.04 24 9 0.13 25 12 0.17 ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52 Consensus pattern (23 bp): ATATATATAATTATAATATATTT Left flanking sequence: Indices 293162 -- 293661 ATAAATGAGAAACAAATAAATAAGCAAACTAATAAATGAGCAAACAAATAAATAAGCAAACTAAT AAATGAGCAAACAAATAAATGAGCAAACAAACAAATAAGCAAATATTCTTCTAAAGGCGTACATC TACATTTATGTACATATCTTATGATAAATGAATAAAAAACATCATGATGACATATAATCAAATAC AAAGATAATAAAAGTTAAAATATGTATATGTTTATGATATTTATATGAATACAATTTTACGTATA TATATCTAAAATTATACACATATATATATATTTATATATATATATATATAACATCTTGTTATGCA AATGTTTTTCCTCAACAAAATAGAACCGGTCATATAATAACAAAAGAAAAGAAAAGAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAGTACGTACATCGTTTATGTGATAAATTTTATGTTTGTAC CAGTGATATAATTTAACACGATAAAGGAAAATAAAATAAAAAAAA Right flanking sequence: Indices 293765 -- 294264 TTTTTTCGGAACGTATCAAAACGACGAAAAACATATAATATATATATATATATACTTAAATAAAA ATCACCAAAAAAAAAAAAAAAAAAAAAAAAATGAGTAAAAATAAAAAGGGAAAAAAGAAGGAAGA TCTCGATGCTATTCTGGCCGAATTAGGAATAGAAGAAAAAAGAGAAGATGACGTAAAAGCAAATG AAAACGAGGAAAATGAACCTACCAAAATGTCCAAGTCCAAAAAGAAAAAGGAAAAACTCAAACAA AAAAAAGAACAAATGAAAAATAAAGAAGATGATGAGAAGGATGATCAAAAAGGTATAGATGGTGA AAAAGATACAGACCAAAAAAAAGATCAGGATGACCAAAAAGATGATGATAACCAAAATGAAGCGG ATAACCAAAATGAAGCAGATAATCAAAATGAAGGTGAAAACCAAAAAAAGAAAAAAAACAAAAAG AAAAAAGATAAAGAAAAAAAAGCTGGTGGAGCAGCAGGAGCAGCT Found at i:293884 original size:15 final size:15 Alignment explanation
Indices: 293836--293885 Score: 58 Period size: 15 Copynumber: 3.3 Consensus size: 15 293826 AAAAATCACC * * 293836 AAAAAAAAAAAAAAA 1 AAAAAAAAAAAGAGA * * 293851 AAAAAAAAAATGAGT 1 AAAAAAAAAAAGAGA * * 293866 AAAAATAAAAAGGGA 1 AAAAAAAAAAAGAGA 293881 AAAAA 1 AAAAA 293886 GAAGGAAGAT Statistics Matches: 27, Mismatches: 8, Indels: 0 0.77 0.23 0.00 Matches are distributed among these distances: 15 27 1.00 ACGTcount: A:0.84, C:0.00, G:0.10, T:0.06 Consensus pattern (15 bp): AAAAAAAAAAAGAGA Left flanking sequence: Indices 293336 -- 293835 TGATGACATATAATCAAATACAAAGATAATAAAAGTTAAAATATGTATATGTTTATGATATTTAT ATGAATACAATTTTACGTATATATATCTAAAATTATACACATATATATATATTTATATATATATA TATATAACATCTTGTTATGCAAATGTTTTTCCTCAACAAAATAGAACCGGTCATATAATAACAAA AGAAAAGAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTACGTACATCGTTTATG TGATAAATTTTATGTTTGTACCAGTGATATAATTTAACACGATAAAGGAAAATAAAATAAAAAAA AATATATATATATATATATATATATATATAATATAATATATTTATAATATATTTGTAATATATTT ATAATATATATATTATTATATGTTTATATATTAATTATATTTTTTCGGAACGTATCAAAACGACG AAAAACATATAATATATATATATATATACTTAAATAAAAATCACC Right flanking sequence: Indices 293886 -- 294385 GAAGGAAGATCTCGATGCTATTCTGGCCGAATTAGGAATAGAAGAAAAAAGAGAAGATGACGTAA AAGCAAATGAAAACGAGGAAAATGAACCTACCAAAATGTCCAAGTCCAAAAAGAAAAAGGAAAAA CTCAAACAAAAAAAAGAACAAATGAAAAATAAAGAAGATGATGAGAAGGATGATCAAAAAGGTAT AGATGGTGAAAAAGATACAGACCAAAAAAAAGATCAGGATGACCAAAAAGATGATGATAACCAAA ATGAAGCGGATAACCAAAATGAAGCAGATAATCAAAATGAAGGTGAAAACCAAAAAAAGAAAAAA AACAAAAAGAAAAAAGATAAAGAAAAAAAAGCTGGTGGAGCAGCAGGAGCAGCTACAGGGGGGAT GTCTGAAATCGCTAAAGCAGCTGCTGAAAGATTAAGGTTATTAAAAGAATATGAAGAAAAAAAGA AAGAAGAAGAAAGATTGAAAAAAGAAGAAGAAGAAGAAAGAATTA Found at i:294128 original size:18 final size:18 Alignment explanation
Indices: 294107--294201 Score: 78 Period size: 18 Copynumber: 5.3 Consensus size: 18 294097 ACAGACCAAA * * 294107 AAAAAGATCAGGATGACC 1 AAAAAGATGAGGATAACC * 294125 AAAAAGATGATGATAACC 1 AAAAAGATGAGGATAACC * * * 294143 AAAATGAAGCGGATAACC 1 AAAAAGATGAGGATAACC * * ** * 294161 AAAATGAAGCAGATAATC 1 AAAAAGATGAGGATAACC * * ** * 294179 AAAATGAAGGTGAAAACC 1 AAAAAGATGAGGATAACC 294197 AAAAA 1 AAAAA 294202 AAGAAAAAAA Statistics Matches: 63, Mismatches: 14, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 18 63 1.00 ACGTcount: A:0.56, C:0.13, G:0.19, T:0.13 Consensus pattern (18 bp): AAAAAGATGAGGATAACC Left flanking sequence: Indices 293607 -- 294106 ATGTTTGTACCAGTGATATAATTTAACACGATAAAGGAAAATAAAATAAAAAAAAATATATATAT ATATATATATATATATATAATATAATATATTTATAATATATTTGTAATATATTTATAATATATAT ATTATTATATGTTTATATATTAATTATATTTTTTCGGAACGTATCAAAACGACGAAAAACATATA ATATATATATATATATACTTAAATAAAAATCACCAAAAAAAAAAAAAAAAAAAAAAAAATGAGTA AAAATAAAAAGGGAAAAAAGAAGGAAGATCTCGATGCTATTCTGGCCGAATTAGGAATAGAAGAA AAAAGAGAAGATGACGTAAAAGCAAATGAAAACGAGGAAAATGAACCTACCAAAATGTCCAAGTC CAAAAAGAAAAAGGAAAAACTCAAACAAAAAAAAGAACAAATGAAAAATAAAGAAGATGATGAGA AGGATGATCAAAAAGGTATAGATGGTGAAAAAGATACAGACCAAA Right flanking sequence: Indices 294202 -- 294701 AAGAAAAAAAACAAAAAGAAAAAAGATAAAGAAAAAAAAGCTGGTGGAGCAGCAGGAGCAGCTAC AGGGGGGATGTCTGAAATCGCTAAAGCAGCTGCTGAAAGATTAAGGTTATTAAAAGAATATGAAG AAAAAAAGAAAGAAGAAGAAAGATTGAAAAAAGAAGAAGAAGAAGAAAGAATTAGAAAAGAAGAA GAAGAAAAAGAAAAAAAAAGAATTGCGAAATTAGAAAAAAAAATGCAATTAAAAAAAGAAGGTAA ATTATTAAGTGCTAAAGCTAAAGAAGAAAAAAAAAAAAATGAAATATATTTAAAACAATTAAAAG AATCAGGTATGCTAATAGAACCAAGAGAAAAAAGCAAATCTGAATATATAAATCTAGATATAAAT AAAACCAAATTATTATTAAAAAAGAAAAAAACCAAATCAATAATGGTACCCACATCATCAAATAA TAATAATCTAAATGATGATGATAAAAATAATAAACAAATGTTATC Found at i:294162 original size:36 final size:36 Alignment explanation
Indices: 294117--294221 Score: 112 Period size: 36 Copynumber: 2.9 Consensus size: 36 294107 AAAAAGATCA * * * 294117 GGATGACCAAAAAGATGATGATAACCAAAATGAAGC 1 GGATAACCAAAAAGAAGAAGATAACCAAAATGAAGC * * * * 294153 GGATAACCAAAATGAAGCAGATAATCAAAATGAAGG 1 GGATAACCAAAAAGAAGAAGATAACCAAAATGAAGC * * * * * * 294189 TGAAAACCAAAAA-AAGAAAAAAAACAAAAAGAA 1 GGATAACCAAAAAGAAGAAGATAACCAAAATGAA 294222 AAAAGATAAA Statistics Matches: 54, Mismatches: 15, Indels: 1 0.77 0.21 0.01 Matches are distributed among these distances: 35 15 0.28 36 39 0.72 ACGTcount: A:0.60, C:0.11, G:0.18, T:0.10 Consensus pattern (36 bp): GGATAACCAAAAAGAAGAAGATAACCAAAATGAAGC Left flanking sequence: Indices 293617 -- 294116 CAGTGATATAATTTAACACGATAAAGGAAAATAAAATAAAAAAAAATATATATATATATATATAT ATATATATAATATAATATATTTATAATATATTTGTAATATATTTATAATATATATATTATTATAT GTTTATATATTAATTATATTTTTTCGGAACGTATCAAAACGACGAAAAACATATAATATATATAT ATATATACTTAAATAAAAATCACCAAAAAAAAAAAAAAAAAAAAAAAAATGAGTAAAAATAAAAA GGGAAAAAAGAAGGAAGATCTCGATGCTATTCTGGCCGAATTAGGAATAGAAGAAAAAAGAGAAG ATGACGTAAAAGCAAATGAAAACGAGGAAAATGAACCTACCAAAATGTCCAAGTCCAAAAAGAAA AAGGAAAAACTCAAACAAAAAAAAGAACAAATGAAAAATAAAGAAGATGATGAGAAGGATGATCA AAAAGGTATAGATGGTGAAAAAGATACAGACCAAAAAAAAGATCA Right flanking sequence: Indices 294222 -- 294721 AAAAGATAAAGAAAAAAAAGCTGGTGGAGCAGCAGGAGCAGCTACAGGGGGGATGTCTGAAATCG CTAAAGCAGCTGCTGAAAGATTAAGGTTATTAAAAGAATATGAAGAAAAAAAGAAAGAAGAAGAA AGATTGAAAAAAGAAGAAGAAGAAGAAAGAATTAGAAAAGAAGAAGAAGAAAAAGAAAAAAAAAG AATTGCGAAATTAGAAAAAAAAATGCAATTAAAAAAAGAAGGTAAATTATTAAGTGCTAAAGCTA AAGAAGAAAAAAAAAAAAATGAAATATATTTAAAACAATTAAAAGAATCAGGTATGCTAATAGAA CCAAGAGAAAAAAGCAAATCTGAATATATAAATCTAGATATAAATAAAACCAAATTATTATTAAA AAAGAAAAAAACCAAATCAATAATGGTACCCACATCATCAAATAATAATAATCTAAATGATGATG ATAAAAATAATAAACAAATGTTATCAAATAGTAGCCTTAAATTAA Found at i:294217 original size:15 final size:15 Alignment explanation
Indices: 294199--294240 Score: 56 Period size: 15 Copynumber: 2.8 Consensus size: 15 294189 TGAAAACCAA 294199 AAAAAGAAAAAAAAC 1 AAAAAGAAAAAAAAC * * 294214 AAAAAGAAAAAAGAT 1 AAAAAGAAAAAAAAC * * 294229 AAAGAAAAAAAA 1 AAAAAGAAAAAA 294241 GCTGGTGGAG Statistics Matches: 23, Mismatches: 4, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 15 23 1.00 ACGTcount: A:0.86, C:0.02, G:0.10, T:0.02 Consensus pattern (15 bp): AAAAAGAAAAAAAAC Left flanking sequence: Indices 293699 -- 294198 TATTTATAATATATTTGTAATATATTTATAATATATATATTATTATATGTTTATATATTAATTAT ATTTTTTCGGAACGTATCAAAACGACGAAAAACATATAATATATATATATATATACTTAAATAAA AATCACCAAAAAAAAAAAAAAAAAAAAAAAAATGAGTAAAAATAAAAAGGGAAAAAAGAAGGAAG ATCTCGATGCTATTCTGGCCGAATTAGGAATAGAAGAAAAAAGAGAAGATGACGTAAAAGCAAAT GAAAACGAGGAAAATGAACCTACCAAAATGTCCAAGTCCAAAAAGAAAAAGGAAAAACTCAAACA AAAAAAAGAACAAATGAAAAATAAAGAAGATGATGAGAAGGATGATCAAAAAGGTATAGATGGTG AAAAAGATACAGACCAAAAAAAAGATCAGGATGACCAAAAAGATGATGATAACCAAAATGAAGCG GATAACCAAAATGAAGCAGATAATCAAAATGAAGGTGAAAACCAA Right flanking sequence: Indices 294241 -- 294740 GCTGGTGGAGCAGCAGGAGCAGCTACAGGGGGGATGTCTGAAATCGCTAAAGCAGCTGCTGAAAG ATTAAGGTTATTAAAAGAATATGAAGAAAAAAAGAAAGAAGAAGAAAGATTGAAAAAAGAAGAAG AAGAAGAAAGAATTAGAAAAGAAGAAGAAGAAAAAGAAAAAAAAAGAATTGCGAAATTAGAAAAA AAAATGCAATTAAAAAAAGAAGGTAAATTATTAAGTGCTAAAGCTAAAGAAGAAAAAAAAAAAAA TGAAATATATTTAAAACAATTAAAAGAATCAGGTATGCTAATAGAACCAAGAGAAAAAAGCAAAT CTGAATATATAAATCTAGATATAAATAAAACCAAATTATTATTAAAAAAGAAAAAAACCAAATCA ATAATGGTACCCACATCATCAAATAATAATAATCTAAATGATGATGATAAAAATAATAAACAAAT GTTATCAAATAGTAGCCTTAAATTAAACGAAGAAGATGAATTACA Found at i:294226 original size:22 final size:22 Alignment explanation
Indices: 294198--294241 Score: 67 Period size: 22 Copynumber: 2.0 Consensus size: 22 294188 GTGAAAACCA * 294198 AAAAAAGAAAAAAAACAAAAAG 1 AAAAAAGAAAAAAAAAAAAAAG * * 294220 AAAAAAGATAAAGAAAAAAAAG 1 AAAAAAGAAAAAAAAAAAAAAG 294242 CTGGTGGAGC Statistics Matches: 19, Mismatches: 3, Indels: 0 0.86 0.14 0.00 Matches are distributed among these distances: 22 19 1.00 ACGTcount: A:0.84, C:0.02, G:0.11, T:0.02 Consensus pattern (22 bp): AAAAAAGAAAAAAAAAAAAAAG Left flanking sequence: Indices 293698 -- 294197 ATATTTATAATATATTTGTAATATATTTATAATATATATATTATTATATGTTTATATATTAATTA TATTTTTTCGGAACGTATCAAAACGACGAAAAACATATAATATATATATATATATACTTAAATAA AAATCACCAAAAAAAAAAAAAAAAAAAAAAAAATGAGTAAAAATAAAAAGGGAAAAAAGAAGGAA GATCTCGATGCTATTCTGGCCGAATTAGGAATAGAAGAAAAAAGAGAAGATGACGTAAAAGCAAA TGAAAACGAGGAAAATGAACCTACCAAAATGTCCAAGTCCAAAAAGAAAAAGGAAAAACTCAAAC AAAAAAAAGAACAAATGAAAAATAAAGAAGATGATGAGAAGGATGATCAAAAAGGTATAGATGGT GAAAAAGATACAGACCAAAAAAAAGATCAGGATGACCAAAAAGATGATGATAACCAAAATGAAGC GGATAACCAAAATGAAGCAGATAATCAAAATGAAGGTGAAAACCA Right flanking sequence: Indices 294242 -- 294741 CTGGTGGAGCAGCAGGAGCAGCTACAGGGGGGATGTCTGAAATCGCTAAAGCAGCTGCTGAAAGA TTAAGGTTATTAAAAGAATATGAAGAAAAAAAGAAAGAAGAAGAAAGATTGAAAAAAGAAGAAGA AGAAGAAAGAATTAGAAAAGAAGAAGAAGAAAAAGAAAAAAAAAGAATTGCGAAATTAGAAAAAA AAATGCAATTAAAAAAAGAAGGTAAATTATTAAGTGCTAAAGCTAAAGAAGAAAAAAAAAAAAAT GAAATATATTTAAAACAATTAAAAGAATCAGGTATGCTAATAGAACCAAGAGAAAAAAGCAAATC TGAATATATAAATCTAGATATAAATAAAACCAAATTATTATTAAAAAAGAAAAAAACCAAATCAA TAATGGTACCCACATCATCAAATAATAATAATCTAAATGATGATGATAAAAATAATAAACAAATG TTATCAAATAGTAGCCTTAAATTAAACGAAGAAGATGAATTACAG Found at i:294241 original size:15 final size:14 Alignment explanation
Indices: 294200--294241 Score: 54 Period size: 13 Copynumber: 3.0 Consensus size: 14 294190 GAAAACCAAA * 294200 AAAAGAAAAAAAAC 1 AAAAGAAAAAAAAG * 294214 AAAA-AGAAAAAAG 1 AAAAGAAAAAAAAG 294227 ATAAAGAAAAAAAAG 1 A-AAAGAAAAAAAAG 294242 CTGGTGGAGC Statistics Matches: 23, Mismatches: 3, Indels: 3 0.79 0.10 0.10 Matches are distributed among these distances: 13 8 0.35 14 7 0.30 15 8 0.35 ACGTcount: A:0.83, C:0.02, G:0.12, T:0.02 Consensus pattern (14 bp): AAAAGAAAAAAAAG Left flanking sequence: Indices 293700 -- 294199 ATTTATAATATATTTGTAATATATTTATAATATATATATTATTATATGTTTATATATTAATTATA TTTTTTCGGAACGTATCAAAACGACGAAAAACATATAATATATATATATATATACTTAAATAAAA ATCACCAAAAAAAAAAAAAAAAAAAAAAAAATGAGTAAAAATAAAAAGGGAAAAAAGAAGGAAGA TCTCGATGCTATTCTGGCCGAATTAGGAATAGAAGAAAAAAGAGAAGATGACGTAAAAGCAAATG AAAACGAGGAAAATGAACCTACCAAAATGTCCAAGTCCAAAAAGAAAAAGGAAAAACTCAAACAA AAAAAAGAACAAATGAAAAATAAAGAAGATGATGAGAAGGATGATCAAAAAGGTATAGATGGTGA AAAAGATACAGACCAAAAAAAAGATCAGGATGACCAAAAAGATGATGATAACCAAAATGAAGCGG ATAACCAAAATGAAGCAGATAATCAAAATGAAGGTGAAAACCAAA Right flanking sequence: Indices 294242 -- 294741 CTGGTGGAGCAGCAGGAGCAGCTACAGGGGGGATGTCTGAAATCGCTAAAGCAGCTGCTGAAAGA TTAAGGTTATTAAAAGAATATGAAGAAAAAAAGAAAGAAGAAGAAAGATTGAAAAAAGAAGAAGA AGAAGAAAGAATTAGAAAAGAAGAAGAAGAAAAAGAAAAAAAAAGAATTGCGAAATTAGAAAAAA AAATGCAATTAAAAAAAGAAGGTAAATTATTAAGTGCTAAAGCTAAAGAAGAAAAAAAAAAAAAT GAAATATATTTAAAACAATTAAAAGAATCAGGTATGCTAATAGAACCAAGAGAAAAAAGCAAATC TGAATATATAAATCTAGATATAAATAAAACCAAATTATTATTAAAAAAGAAAAAAACCAAATCAA TAATGGTACCCACATCATCAAATAATAATAATCTAAATGATGATGATAAAAATAATAAACAAATG TTATCAAATAGTAGCCTTAAATTAAACGAAGAAGATGAATTACAG Found at i:294350 original size:27 final size:24 Alignment explanation
Indices: 294320--294418 Score: 91 Period size: 24 Copynumber: 3.8 Consensus size: 24 294310 AGGTTATTAA 294320 AAGAATATGAAGAAAAAAAGAAAGAAG 1 AAGAA-ATGAA-AAAAAAAG-AAGAAG * 294347 AAGAAAGATTGAAAAAAGAAGAAGAAG 1 AAG-AA-A-TGAAAAAAAAAGAAGAAG * * 294374 AAGAAA-GAATTAGAAAAGAAGAAG 1 AAGAAATGAA-AAAAAAAGAAGAAG * 294398 AAGAAAAAGAAAAAAAAAGAA 1 AAG-AAATGAAAAAAAAAGAA 294419 TTGCGAAATT Statistics Matches: 60, Mismatches: 7, Indels: 12 0.76 0.09 0.15 Matches are distributed among these distances: 23 3 0.05 24 14 0.23 25 12 0.20 26 5 0.08 27 12 0.20 28 10 0.17 29 4 0.07 ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06 Consensus pattern (24 bp): AAGAAATGAAAAAAAAAGAAGAAG Left flanking sequence: Indices 293820 -- 294319 TTAAATAAAAATCACCAAAAAAAAAAAAAAAAAAAAAAAAATGAGTAAAAATAAAAAGGGAAAAA AGAAGGAAGATCTCGATGCTATTCTGGCCGAATTAGGAATAGAAGAAAAAAGAGAAGATGACGTA AAAGCAAATGAAAACGAGGAAAATGAACCTACCAAAATGTCCAAGTCCAAAAAGAAAAAGGAAAA ACTCAAACAAAAAAAAGAACAAATGAAAAATAAAGAAGATGATGAGAAGGATGATCAAAAAGGTA TAGATGGTGAAAAAGATACAGACCAAAAAAAAGATCAGGATGACCAAAAAGATGATGATAACCAA AATGAAGCGGATAACCAAAATGAAGCAGATAATCAAAATGAAGGTGAAAACCAAAAAAAGAAAAA AAACAAAAAGAAAAAAGATAAAGAAAAAAAAGCTGGTGGAGCAGCAGGAGCAGCTACAGGGGGGA TGTCTGAAATCGCTAAAGCAGCTGCTGAAAGATTAAGGTTATTAA Right flanking sequence: Indices 294419 -- 294918 TTGCGAAATTAGAAAAAAAAATGCAATTAAAAAAAGAAGGTAAATTATTAAGTGCTAAAGCTAAA GAAGAAAAAAAAAAAAATGAAATATATTTAAAACAATTAAAAGAATCAGGTATGCTAATAGAACC AAGAGAAAAAAGCAAATCTGAATATATAAATCTAGATATAAATAAAACCAAATTATTATTAAAAA AGAAAAAAACCAAATCAATAATGGTACCCACATCATCAAATAATAATAATCTAAATGATGATGAT AAAAATAATAAACAAATGTTATCAAATAGTAGCCTTAAATTAAACGAAGAAGATGAATTACAGGG TTCTCAAAAAGTAGATGAAAAAGATATTGTACTCGACAATTGGGAAGATTTTTTACATATTGATG AAGCAAAAAAAAAGGAACAAGAAGAAATTGAAAGAAAAGAAAAAGAAAGAAAAGAAAAAGAAAAA GAAGAAAGAGAAAAGGAAAGGAAGTCTGTTATAAATAATAGTAGT Found at i:294377 original size:30 final size:28 Alignment explanation
Indices: 294341--294410 Score: 94 Period size: 27 Copynumber: 2.5 Consensus size: 28 294331 GAAAAAAAGA 294341 AAGAAGAAGAAAGATTGAAAAAAGAAGAAG 1 AAGAAGAAGAAA-ATT-AAAAAAGAAGAAG * * 294371 AAGAAGAA-AGAATTAGAAAAGAAGAAG 1 AAGAAGAAGAAAATTAAAAAAGAAGAAG * 294398 AAGAAAAAGAAAA 1 AAGAAGAAGAAAA 294411 AAAAAGAATT Statistics Matches: 35, Mismatches: 4, Indels: 4 0.81 0.09 0.09 Matches are distributed among these distances: 27 19 0.54 28 6 0.17 29 2 0.06 30 8 0.23 ACGTcount: A:0.70, C:0.00, G:0.24, T:0.06 Consensus pattern (28 bp): AAGAAGAAGAAAATTAAAAAAGAAGAAG Left flanking sequence: Indices 293841 -- 294340 AAAAAAAAAAAAAAAAAAAATGAGTAAAAATAAAAAGGGAAAAAAGAAGGAAGATCTCGATGCTA TTCTGGCCGAATTAGGAATAGAAGAAAAAAGAGAAGATGACGTAAAAGCAAATGAAAACGAGGAA AATGAACCTACCAAAATGTCCAAGTCCAAAAAGAAAAAGGAAAAACTCAAACAAAAAAAAGAACA AATGAAAAATAAAGAAGATGATGAGAAGGATGATCAAAAAGGTATAGATGGTGAAAAAGATACAG ACCAAAAAAAAGATCAGGATGACCAAAAAGATGATGATAACCAAAATGAAGCGGATAACCAAAAT GAAGCAGATAATCAAAATGAAGGTGAAAACCAAAAAAAGAAAAAAAACAAAAAGAAAAAAGATAA AGAAAAAAAAGCTGGTGGAGCAGCAGGAGCAGCTACAGGGGGGATGTCTGAAATCGCTAAAGCAG CTGCTGAAAGATTAAGGTTATTAAAAGAATATGAAGAAAAAAAGA Right flanking sequence: Indices 294411 -- 294910 AAAAAGAATTGCGAAATTAGAAAAAAAAATGCAATTAAAAAAAGAAGGTAAATTATTAAGTGCTA AAGCTAAAGAAGAAAAAAAAAAAAATGAAATATATTTAAAACAATTAAAAGAATCAGGTATGCTA ATAGAACCAAGAGAAAAAAGCAAATCTGAATATATAAATCTAGATATAAATAAAACCAAATTATT ATTAAAAAAGAAAAAAACCAAATCAATAATGGTACCCACATCATCAAATAATAATAATCTAAATG ATGATGATAAAAATAATAAACAAATGTTATCAAATAGTAGCCTTAAATTAAACGAAGAAGATGAA TTACAGGGTTCTCAAAAAGTAGATGAAAAAGATATTGTACTCGACAATTGGGAAGATTTTTTACA TATTGATGAAGCAAAAAAAAAGGAACAAGAAGAAATTGAAAGAAAAGAAAAAGAAAGAAAAGAAA AAGAAAAAGAAGAAAGAGAAAAGGAAAGGAAGTCTGTTATAAATA Found at i:294456 original size:24 final size:23 Alignment explanation
Indices: 294401--294456 Score: 57 Period size: 24 Copynumber: 2.3 Consensus size: 23 294391 GAAGAAGAAG * 294401 AAAAAGAAAAAAAAAGAATTGCGA 1 AAAAAGAAAAAAAAAGAATT-CAA ** 294425 AATTAGAAAAAAAAATGCAATT-AA 1 AAAAAGAAAAAAAAA-G-AATTCAA 294449 AAAAAGAA 1 AAAAAGAA 294457 GGTAAATTAT Statistics Matches: 25, Mismatches: 5, Indels: 4 0.74 0.15 0.12 Matches are distributed among these distances: 24 20 0.80 25 1 0.04 26 4 0.16 ACGTcount: A:0.71, C:0.04, G:0.12, T:0.12 Consensus pattern (23 bp): AAAAAGAAAAAAAAAGAATTCAA Left flanking sequence: Indices 293901 -- 294400 TGCTATTCTGGCCGAATTAGGAATAGAAGAAAAAAGAGAAGATGACGTAAAAGCAAATGAAAACG AGGAAAATGAACCTACCAAAATGTCCAAGTCCAAAAAGAAAAAGGAAAAACTCAAACAAAAAAAA GAACAAATGAAAAATAAAGAAGATGATGAGAAGGATGATCAAAAAGGTATAGATGGTGAAAAAGA TACAGACCAAAAAAAAGATCAGGATGACCAAAAAGATGATGATAACCAAAATGAAGCGGATAACC AAAATGAAGCAGATAATCAAAATGAAGGTGAAAACCAAAAAAAGAAAAAAAACAAAAAGAAAAAA GATAAAGAAAAAAAAGCTGGTGGAGCAGCAGGAGCAGCTACAGGGGGGATGTCTGAAATCGCTAA AGCAGCTGCTGAAAGATTAAGGTTATTAAAAGAATATGAAGAAAAAAAGAAAGAAGAAGAAAGAT TGAAAAAAGAAGAAGAAGAAGAAAGAATTAGAAAAGAAGAAGAAG Right flanking sequence: Indices 294457 -- 294956 GGTAAATTATTAAGTGCTAAAGCTAAAGAAGAAAAAAAAAAAAATGAAATATATTTAAAACAATT AAAAGAATCAGGTATGCTAATAGAACCAAGAGAAAAAAGCAAATCTGAATATATAAATCTAGATA TAAATAAAACCAAATTATTATTAAAAAAGAAAAAAACCAAATCAATAATGGTACCCACATCATCA AATAATAATAATCTAAATGATGATGATAAAAATAATAAACAAATGTTATCAAATAGTAGCCTTAA ATTAAACGAAGAAGATGAATTACAGGGTTCTCAAAAAGTAGATGAAAAAGATATTGTACTCGACA ATTGGGAAGATTTTTTACATATTGATGAAGCAAAAAAAAAGGAACAAGAAGAAATTGAAAGAAAA GAAAAAGAAAGAAAAGAAAAAGAAAAAGAAGAAAGAGAAAAGGAAAGGAAGTCTGTTATAAATAA TAGTAGTAGTAGTATAAATTATGGTAGGAAAAGTTTTCATATTAA Found at i:294464 original size:18 final size:18 Alignment explanation
Indices: 294423--294465 Score: 49 Period size: 18 Copynumber: 2.4 Consensus size: 18 294413 AAAGAATTGC * 294423 GAAATTAGAAAAAAAAAT 1 GAAATTAGAAAAAAAAAG * * 294441 GCAATTA-AAAAAAGAAG 1 GAAATTAGAAAAAAAAAG 294458 GTAAATTA 1 G-AAATTA 294466 TTAAGTGCTA Statistics Matches: 20, Mismatches: 4, Indels: 2 0.77 0.15 0.08 Matches are distributed among these distances: 17 9 0.45 18 11 0.55 ACGTcount: A:0.65, C:0.02, G:0.14, T:0.19 Consensus pattern (18 bp): GAAATTAGAAAAAAAAAG Left flanking sequence: Indices 293923 -- 294422 ATAGAAGAAAAAAGAGAAGATGACGTAAAAGCAAATGAAAACGAGGAAAATGAACCTACCAAAAT GTCCAAGTCCAAAAAGAAAAAGGAAAAACTCAAACAAAAAAAAGAACAAATGAAAAATAAAGAAG ATGATGAGAAGGATGATCAAAAAGGTATAGATGGTGAAAAAGATACAGACCAAAAAAAAGATCAG GATGACCAAAAAGATGATGATAACCAAAATGAAGCGGATAACCAAAATGAAGCAGATAATCAAAA TGAAGGTGAAAACCAAAAAAAGAAAAAAAACAAAAAGAAAAAAGATAAAGAAAAAAAAGCTGGTG GAGCAGCAGGAGCAGCTACAGGGGGGATGTCTGAAATCGCTAAAGCAGCTGCTGAAAGATTAAGG TTATTAAAAGAATATGAAGAAAAAAAGAAAGAAGAAGAAAGATTGAAAAAAGAAGAAGAAGAAGA AAGAATTAGAAAAGAAGAAGAAGAAAAAGAAAAAAAAAGAATTGC Right flanking sequence: Indices 294466 -- 294965 TTAAGTGCTAAAGCTAAAGAAGAAAAAAAAAAAAATGAAATATATTTAAAACAATTAAAAGAATC AGGTATGCTAATAGAACCAAGAGAAAAAAGCAAATCTGAATATATAAATCTAGATATAAATAAAA CCAAATTATTATTAAAAAAGAAAAAAACCAAATCAATAATGGTACCCACATCATCAAATAATAAT AATCTAAATGATGATGATAAAAATAATAAACAAATGTTATCAAATAGTAGCCTTAAATTAAACGA AGAAGATGAATTACAGGGTTCTCAAAAAGTAGATGAAAAAGATATTGTACTCGACAATTGGGAAG ATTTTTTACATATTGATGAAGCAAAAAAAAAGGAACAAGAAGAAATTGAAAGAAAAGAAAAAGAA AGAAAAGAAAAAGAAAAAGAAGAAAGAGAAAAGGAAAGGAAGTCTGTTATAAATAATAGTAGTAG TAGTATAAATTATGGTAGGAAAAGTTTTCATATTAAAAATGATAT Found at i:294581 original size:14 final size:16 Alignment explanation
Indices: 294562--294594 Score: 45 Period size: 16 Copynumber: 2.2 Consensus size: 16 294552 AGAAAAAAGC * 294562 AAATCT-GA-ATATAT 1 AAATCTAGATATAAAT 294576 AAATCTAGATATAAAT 1 AAATCTAGATATAAAT 294592 AAA 1 AAA 294595 ACCAAATTAT Statistics Matches: 16, Mismatches: 1, Indels: 2 0.84 0.05 0.11 Matches are distributed among these distances: 14 6 0.38 15 2 0.12 16 8 0.50 ACGTcount: A:0.58, C:0.06, G:0.06, T:0.30 Consensus pattern (16 bp): AAATCTAGATATAAAT Left flanking sequence: Indices 294062 -- 294561 AGGATGATCAAAAAGGTATAGATGGTGAAAAAGATACAGACCAAAAAAAAGATCAGGATGACCAA AAAGATGATGATAACCAAAATGAAGCGGATAACCAAAATGAAGCAGATAATCAAAATGAAGGTGA AAACCAAAAAAAGAAAAAAAACAAAAAGAAAAAAGATAAAGAAAAAAAAGCTGGTGGAGCAGCAG GAGCAGCTACAGGGGGGATGTCTGAAATCGCTAAAGCAGCTGCTGAAAGATTAAGGTTATTAAAA GAATATGAAGAAAAAAAGAAAGAAGAAGAAAGATTGAAAAAAGAAGAAGAAGAAGAAAGAATTAG AAAAGAAGAAGAAGAAAAAGAAAAAAAAAGAATTGCGAAATTAGAAAAAAAAATGCAATTAAAAA AAGAAGGTAAATTATTAAGTGCTAAAGCTAAAGAAGAAAAAAAAAAAAATGAAATATATTTAAAA CAATTAAAAGAATCAGGTATGCTAATAGAACCAAGAGAAAAAAGC Right flanking sequence: Indices 294595 -- 295094 ACCAAATTATTATTAAAAAAGAAAAAAACCAAATCAATAATGGTACCCACATCATCAAATAATAA TAATCTAAATGATGATGATAAAAATAATAAACAAATGTTATCAAATAGTAGCCTTAAATTAAACG AAGAAGATGAATTACAGGGTTCTCAAAAAGTAGATGAAAAAGATATTGTACTCGACAATTGGGAA GATTTTTTACATATTGATGAAGCAAAAAAAAAGGAACAAGAAGAAATTGAAAGAAAAGAAAAAGA AAGAAAAGAAAAAGAAAAAGAAGAAAGAGAAAAGGAAAGGAAGTCTGTTATAAATAATAGTAGTA GTAGTATAAATTATGGTAGGAAAAGTTTTCATATTAAAAATGATATATTAATGAGAAAAGGAAAT AAGAAAAAAATCGATAATGAATTAGATGATGATGATAATAATGAATATAGATCTGCTATTGTTTG TATATTAGGTCATGTAGATACAGGGAAAACAAAATTATTAGATAA Found at i:294850 original size:15 final size:15 Alignment explanation
Indices: 294809--294886 Score: 84 Period size: 15 Copynumber: 5.1 Consensus size: 15 294799 CATATTGATG * * * 294809 AAGCAAAAAAAAAGG 1 AAGAAAAGAAAAAGA * ** 294824 AACAAGAAGAAATTGA 1 AAGAA-AAGAAAAAGA 294840 AAGAAAAGAAAAAGA 1 AAGAAAAGAAAAAGA 294855 AAGAAAAGAAAAAGA 1 AAGAAAAGAAAAAGA * * * 294870 AAAAGAAGAAAGAGA 1 AAGAAAAGAAAAAGA 294885 AA 1 AA 294887 AGGAAAGGAA Statistics Matches: 50, Mismatches: 12, Indels: 2 0.78 0.19 0.03 Matches are distributed among these distances: 15 40 0.80 16 10 0.20 ACGTcount: A:0.74, C:0.03, G:0.21, T:0.03 Consensus pattern (15 bp): AAGAAAAGAAAAAGA Left flanking sequence: Indices 294309 -- 294808 AAGGTTATTAAAAGAATATGAAGAAAAAAAGAAAGAAGAAGAAAGATTGAAAAAAGAAGAAGAAG AAGAAAGAATTAGAAAAGAAGAAGAAGAAAAAGAAAAAAAAAGAATTGCGAAATTAGAAAAAAAA ATGCAATTAAAAAAAGAAGGTAAATTATTAAGTGCTAAAGCTAAAGAAGAAAAAAAAAAAAATGA AATATATTTAAAACAATTAAAAGAATCAGGTATGCTAATAGAACCAAGAGAAAAAAGCAAATCTG AATATATAAATCTAGATATAAATAAAACCAAATTATTATTAAAAAAGAAAAAAACCAAATCAATA ATGGTACCCACATCATCAAATAATAATAATCTAAATGATGATGATAAAAATAATAAACAAATGTT ATCAAATAGTAGCCTTAAATTAAACGAAGAAGATGAATTACAGGGTTCTCAAAAAGTAGATGAAA AAGATATTGTACTCGACAATTGGGAAGATTTTTTACATATTGATG Right flanking sequence: Indices 294887 -- 295386 AGGAAAGGAAGTCTGTTATAAATAATAGTAGTAGTAGTATAAATTATGGTAGGAAAAGTTTTCAT ATTAAAAATGATATATTAATGAGAAAAGGAAATAAGAAAAAAATCGATAATGAATTAGATGATGA TGATAATAATGAATATAGATCTGCTATTGTTTGTATATTAGGTCATGTAGATACAGGGAAAACAA AATTATTAGATAAGTTAAGACATACAAATGTTCAAGATAATGAAGCTGGTGGTATAACACAACAA ATTGGAGCAACATTTTTTCCAAAAGATGTATTAGATAAAGAAATAAAAAAAATTGATGATACAAT TAAATGTTTATCAAAAGGTATTATGATAATAGATACACCTGGACATGAATCCTTTTATAATTTAA GAAAACGAGGTTCATCCTTATGTGACATAGCTATCTTGGTTATAGATTTAATGCATGGTTTAGAA CAACAAACAAAAGAATCTATTCAAATATTAAAACAAAGAAATTGT Found at i:294855 original size:21 final size:21 Alignment explanation
Indices: 294839--294892 Score: 78 Period size: 21 Copynumber: 2.6 Consensus size: 21 294829 GAAGAAATTG 294839 AAAG-AAAAGAAAAAGAAAGA 1 AAAGAAAAAGAAAAAGAAAGA 294859 AAAGAAAAAGAAAAAG-AAGA 1 AAAGAAAAAGAAAAAGAAAGA * 294879 AAGAGAAAAGGAAA 1 AA-AGAAAAAGAAA 294893 GGAAGTCTGT Statistics Matches: 31, Mismatches: 1, Indels: 3 0.89 0.03 0.09 Matches are distributed among these distances: 20 10 0.32 21 21 0.68 ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00 Consensus pattern (21 bp): AAAGAAAAAGAAAAAGAAAGA Left flanking sequence: Indices 294339 -- 294838 GAAAGAAGAAGAAAGATTGAAAAAAGAAGAAGAAGAAGAAAGAATTAGAAAAGAAGAAGAAGAAA AAGAAAAAAAAAGAATTGCGAAATTAGAAAAAAAAATGCAATTAAAAAAAGAAGGTAAATTATTA AGTGCTAAAGCTAAAGAAGAAAAAAAAAAAAATGAAATATATTTAAAACAATTAAAAGAATCAGG TATGCTAATAGAACCAAGAGAAAAAAGCAAATCTGAATATATAAATCTAGATATAAATAAAACCA AATTATTATTAAAAAAGAAAAAAACCAAATCAATAATGGTACCCACATCATCAAATAATAATAAT CTAAATGATGATGATAAAAATAATAAACAAATGTTATCAAATAGTAGCCTTAAATTAAACGAAGA AGATGAATTACAGGGTTCTCAAAAAGTAGATGAAAAAGATATTGTACTCGACAATTGGGAAGATT TTTTACATATTGATGAAGCAAAAAAAAAGGAACAAGAAGAAATTG Right flanking sequence: Indices 294893 -- 295392 GGAAGTCTGTTATAAATAATAGTAGTAGTAGTATAAATTATGGTAGGAAAAGTTTTCATATTAAA AATGATATATTAATGAGAAAAGGAAATAAGAAAAAAATCGATAATGAATTAGATGATGATGATAA TAATGAATATAGATCTGCTATTGTTTGTATATTAGGTCATGTAGATACAGGGAAAACAAAATTAT TAGATAAGTTAAGACATACAAATGTTCAAGATAATGAAGCTGGTGGTATAACACAACAAATTGGA GCAACATTTTTTCCAAAAGATGTATTAGATAAAGAAATAAAAAAAATTGATGATACAATTAAATG TTTATCAAAAGGTATTATGATAATAGATACACCTGGACATGAATCCTTTTATAATTTAAGAAAAC GAGGTTCATCCTTATGTGACATAGCTATCTTGGTTATAGATTTAATGCATGGTTTAGAACAACAA ACAAAAGAATCTATTCAAATATTAAAACAAAGAAATTGTCCATTT Found at i:294864 original size:20 final size:20 Alignment explanation
Indices: 294839--294896 Score: 77 Period size: 20 Copynumber: 2.9 Consensus size: 20 294829 GAAGAAATTG 294839 AAAGAAAAGAAAAAGAAAGA 1 AAAGAAAAGAAAAAGAAAGA 294859 AAAGAAAAAGAAAAAG-AAGA 1 AAAG-AAAAGAAAAAGAAAGA * * 294879 AAGAGAAAAGGAAAGGAA 1 AA-AGAAAAGAAAAAGAA 294897 GTCTGTTATA Statistics Matches: 33, Mismatches: 2, Indels: 5 0.82 0.05 0.12 Matches are distributed among these distances: 20 19 0.58 21 14 0.42 ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00 Consensus pattern (20 bp): AAAGAAAAGAAAAAGAAAGA Left flanking sequence: Indices 294339 -- 294838 GAAAGAAGAAGAAAGATTGAAAAAAGAAGAAGAAGAAGAAAGAATTAGAAAAGAAGAAGAAGAAA AAGAAAAAAAAAGAATTGCGAAATTAGAAAAAAAAATGCAATTAAAAAAAGAAGGTAAATTATTA AGTGCTAAAGCTAAAGAAGAAAAAAAAAAAAATGAAATATATTTAAAACAATTAAAAGAATCAGG TATGCTAATAGAACCAAGAGAAAAAAGCAAATCTGAATATATAAATCTAGATATAAATAAAACCA AATTATTATTAAAAAAGAAAAAAACCAAATCAATAATGGTACCCACATCATCAAATAATAATAAT CTAAATGATGATGATAAAAATAATAAACAAATGTTATCAAATAGTAGCCTTAAATTAAACGAAGA AGATGAATTACAGGGTTCTCAAAAAGTAGATGAAAAAGATATTGTACTCGACAATTGGGAAGATT TTTTACATATTGATGAAGCAAAAAAAAAGGAACAAGAAGAAATTG Right flanking sequence: Indices 294897 -- 295396 GTCTGTTATAAATAATAGTAGTAGTAGTATAAATTATGGTAGGAAAAGTTTTCATATTAAAAATG ATATATTAATGAGAAAAGGAAATAAGAAAAAAATCGATAATGAATTAGATGATGATGATAATAAT GAATATAGATCTGCTATTGTTTGTATATTAGGTCATGTAGATACAGGGAAAACAAAATTATTAGA TAAGTTAAGACATACAAATGTTCAAGATAATGAAGCTGGTGGTATAACACAACAAATTGGAGCAA CATTTTTTCCAAAAGATGTATTAGATAAAGAAATAAAAAAAATTGATGATACAATTAAATGTTTA TCAAAAGGTATTATGATAATAGATACACCTGGACATGAATCCTTTTATAATTTAAGAAAACGAGG TTCATCCTTATGTGACATAGCTATCTTGGTTATAGATTTAATGCATGGTTTAGAACAACAAACAA AAGAATCTATTCAAATATTAAAACAAAGAAATTGTCCATTTGTTA Found at i:297125 original size:14 final size:14 Alignment explanation
Indices: 297108--297136 Score: 44 Period size: 14 Copynumber: 2.1 Consensus size: 14 297098 AAAAAAAAAT * 297108 TATACATCCATTAA 1 TATACATACATTAA * 297122 TATACATATATTAA 1 TATACATACATTAA 297136 T 1 T 297137 GGTTTAATTC Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 14 13 1.00 ACGTcount: A:0.45, C:0.14, G:0.00, T:0.41 Consensus pattern (14 bp): TATACATACATTAA Left flanking sequence: Indices 296608 -- 297107 GTATGTATTAAAATTTGTGGGGAACCACATGTAACATATGGTAAACATTTTGATTCAACACAAAA AATTTATAGTAAAATTACAAGAGAAAGTATAGATGTTCTGAAAGAATATTTTAGAAGCGAGTTAA CAATGGAAGATTGGAAGCTCGTAGTACAGCTCAAAAAAATATTTAACATTGTATAAAATTGTGTG AAATATATTAATATTATTATTATTATTATTATTAATATGTATGGTTGTAATCTGTGTCTCCTGGA GATACCATCATACTGTGATAGCACCACACACGCAAAAGTGTGTATATAAATATGTAAATATATAA ATATATATAAATATATATATATATATATATATATATATATATATATATATATATTGACATGTGTG TGTTATGCTTTTTATAAATTCATTGCTATGTATATTTGGAGAAGGCTCTTTATTTCTTGTGTCCT CCCCGTGTTATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAT Right flanking sequence: Indices 297137 -- 297636 GGTTTAATTCAAATACATTATGTATTAATAGCATATCTTGTTATATAAACATATATTTTTATATT TTACTTTTTATTTATTTTTAAAATTTTCTTCCTTTTTTTTTTTTTTTTTTTTTTGAAAAACTTAT CATTCTATATTTAATTATACTTATAAAAGAACGAAATGTGTATTCCATTCTTTTATGAAATATAT AAATATAAATATATATACATATATATATGTATATATTTTATATTTATATTTTATTTTTTTTATTT TTATCCATTCATTTATATTGCATTTACCATTATTAATATTTGAATATTCAAATTTAAAAAGAAAA AAAAAAATTATATGTATACCTTCATATTGTCAAATGTTACAAATATATTTATAGACAAATATAAT TGTAAATATAATATGTGTTTCATAATTTTTATATATTTTTTTTAGAAACCTTTTTTTTTAAAATA TAAGAAAATAAAATATTATGAAATAAATAAGCACATATAAGTGTA Found at i:297219 original size:10 final size:11 Alignment explanation
Indices: 297201--297221 Score: 35 Period size: 10 Copynumber: 2.0 Consensus size: 11 297191 ATTTTTATAT 297201 TTTACTTTTTA 1 TTTACTTTTTA 297212 TTTA-TTTTTA 1 TTTACTTTTTA 297222 AAATTTTCTT Statistics Matches: 10, Mismatches: 0, Indels: 1 0.91 0.00 0.09 Matches are distributed among these distances: 10 6 0.60 11 4 0.40 ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76 Consensus pattern (11 bp): TTTACTTTTTA Left flanking sequence: Indices 296701 -- 297200 ATAGATGTTCTGAAAGAATATTTTAGAAGCGAGTTAACAATGGAAGATTGGAAGCTCGTAGTACA GCTCAAAAAAATATTTAACATTGTATAAAATTGTGTGAAATATATTAATATTATTATTATTATTA TTATTAATATGTATGGTTGTAATCTGTGTCTCCTGGAGATACCATCATACTGTGATAGCACCACA CACGCAAAAGTGTGTATATAAATATGTAAATATATAAATATATATAAATATATATATATATATAT ATATATATATATATATATATATATATTGACATGTGTGTGTTATGCTTTTTATAAATTCATTGCTA TGTATATTTGGAGAAGGCTCTTTATTTCTTGTGTCCTCCCCGTGTTATATAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAATTATACATCCATTAATATACATATATTAATGGTTTAATTCAAATACATT ATGTATTAATAGCATATCTTGTTATATAAACATATATTTTTATAT Right flanking sequence: Indices 297222 -- 297721 AAATTTTCTTCCTTTTTTTTTTTTTTTTTTTTTTGAAAAACTTATCATTCTATATTTAATTATAC TTATAAAAGAACGAAATGTGTATTCCATTCTTTTATGAAATATATAAATATAAATATATATACAT ATATATATGTATATATTTTATATTTATATTTTATTTTTTTTATTTTTATCCATTCATTTATATTG CATTTACCATTATTAATATTTGAATATTCAAATTTAAAAAGAAAAAAAAAAATTATATGTATACC TTCATATTGTCAAATGTTACAAATATATTTATAGACAAATATAATTGTAAATATAATATGTGTTT CATAATTTTTATATATTTTTTTTAGAAACCTTTTTTTTTAAAATATAAGAAAATAAAATATTATG AAATAAATAAGCACATATAAGTGTATATATATATATATATATATATATATATATATAATATGTAA TATTTTTAAGGAAAAATAAATAAAAAATAAAATTCTTTTTAGTAT Found at i:297381 original size:13 final size:13 Alignment explanation
Indices: 297363--297389 Score: 47 Period size: 13 Copynumber: 2.1 Consensus size: 13 297353 TATATATGTA 297363 TATATTTTATATT 1 TATATTTTATATT * 297376 TATATTTTATTTT 1 TATATTTTATATT 297389 T 1 T 297390 TTTATTTTTA Statistics Matches: 13, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74 Consensus pattern (13 bp): TATATTTTATATT Left flanking sequence: Indices 296863 -- 297362 CTGGAGATACCATCATACTGTGATAGCACCACACACGCAAAAGTGTGTATATAAATATGTAAATA TATAAATATATATAAATATATATATATATATATATATATATATATATATATATATATATTGACAT GTGTGTGTTATGCTTTTTATAAATTCATTGCTATGTATATTTGGAGAAGGCTCTTTATTTCTTGT GTCCTCCCCGTGTTATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTATACATCCATTAAT ATACATATATTAATGGTTTAATTCAAATACATTATGTATTAATAGCATATCTTGTTATATAAACA TATATTTTTATATTTTACTTTTTATTTATTTTTAAAATTTTCTTCCTTTTTTTTTTTTTTTTTTT TTTGAAAAACTTATCATTCTATATTTAATTATACTTATAAAAGAACGAAATGTGTATTCCATTCT TTTATGAAATATATAAATATAAATATATATACATATATATATGTA Right flanking sequence: Indices 297390 -- 297889 TTTATTTTTATCCATTCATTTATATTGCATTTACCATTATTAATATTTGAATATTCAAATTTAAA AAGAAAAAAAAAAATTATATGTATACCTTCATATTGTCAAATGTTACAAATATATTTATAGACAA ATATAATTGTAAATATAATATGTGTTTCATAATTTTTATATATTTTTTTTAGAAACCTTTTTTTT TAAAATATAAGAAAATAAAATATTATGAAATAAATAAGCACATATAAGTGTATATATATATATAT ATATATATATATATATATAATATGTAATATTTTTAAGGAAAAATAAATAAAAAATAAAATTCTTT TTAGTATAGAAATTTATACTTTTTGTCACTTCGTATAAGGGCTGAATATAATATACTCTTTTTCA TTCCTGTCTTGGAATGCTTTTCTTATAAATATTTTAAAATAAAATAAAATACATATATAATATAT ATATTATTTTGTAAAAATATTTAGTGTAATATTATTTTATATTAT Found at i:297603 original size:15 final size:15 Alignment explanation
Indices: 297585--297618 Score: 47 Period size: 15 Copynumber: 2.3 Consensus size: 15 297575 CCTTTTTTTT 297585 TAAAATATAAGAAAA 1 TAAAATATAAGAAAA * ** 297600 TAAAATATTATGAAA 1 TAAAATATAAGAAAA 297615 TAAA 1 TAAA 297619 TAAGCACATA Statistics Matches: 16, Mismatches: 3, Indels: 0 0.84 0.16 0.00 Matches are distributed among these distances: 15 16 1.00 ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26 Consensus pattern (15 bp): TAAAATATAAGAAAA Left flanking sequence: Indices 297085 -- 297584 AAAAAAAAAAAAAAAAAAAAAATTATACATCCATTAATATACATATATTAATGGTTTAATTCAAA TACATTATGTATTAATAGCATATCTTGTTATATAAACATATATTTTTATATTTTACTTTTTATTT ATTTTTAAAATTTTCTTCCTTTTTTTTTTTTTTTTTTTTTTGAAAAACTTATCATTCTATATTTA ATTATACTTATAAAAGAACGAAATGTGTATTCCATTCTTTTATGAAATATATAAATATAAATATA TATACATATATATATGTATATATTTTATATTTATATTTTATTTTTTTTATTTTTATCCATTCATT TATATTGCATTTACCATTATTAATATTTGAATATTCAAATTTAAAAAGAAAAAAAAAAATTATAT GTATACCTTCATATTGTCAAATGTTACAAATATATTTATAGACAAATATAATTGTAAATATAATA TGTGTTTCATAATTTTTATATATTTTTTTTAGAAACCTTTTTTTT Right flanking sequence: Indices 297619 -- 298118 TAAGCACATATAAGTGTATATATATATATATATATATATATATATATATAATATGTAATATTTTT AAGGAAAAATAAATAAAAAATAAAATTCTTTTTAGTATAGAAATTTATACTTTTTGTCACTTCGT ATAAGGGCTGAATATAATATACTCTTTTTCATTCCTGTCTTGGAATGCTTTTCTTATAAATATTT TAAAATAAAATAAAATACATATATAATATATATATTATTTTGTAAAAATATTTAGTGTAATATTA TTTTATATTATATTATATTATAATATTTTATTTTTTAAACCTAGTTCCATTCTTCAAAATGAACA TCAGCGATATAGAATTCTTGAATCATGTGACTAATATAAAAAATATGGACATCCTACAACTGTTC TCAAAGGAGTAAAAAAATAAAGATATAATAATTATATGTATATATATATATTTATTTATTTATTT ATTTATAATTTTATGGTGTTTTATTTATTCTTCATATAGTTGGAT Found at i:297846 original size:11 final size:11 Alignment explanation
Indices: 297823--297848 Score: 38 Period size: 11 Copynumber: 2.4 Consensus size: 11 297813 TTAAAATAAA * 297823 ATAAAATACAT 1 ATATAATACAT * 297834 ATATAATATAT 1 ATATAATACAT 297845 ATAT 1 ATAT 297849 TATTTTGTAA Statistics Matches: 13, Mismatches: 2, Indels: 0 0.87 0.13 0.00 Matches are distributed among these distances: 11 13 1.00 ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38 Consensus pattern (11 bp): ATATAATACAT Left flanking sequence: Indices 297323 -- 297822 GAAATATATAAATATAAATATATATACATATATATATGTATATATTTTATATTTATATTTTATTT TTTTTATTTTTATCCATTCATTTATATTGCATTTACCATTATTAATATTTGAATATTCAAATTTA AAAAGAAAAAAAAAAATTATATGTATACCTTCATATTGTCAAATGTTACAAATATATTTATAGAC AAATATAATTGTAAATATAATATGTGTTTCATAATTTTTATATATTTTTTTTAGAAACCTTTTTT TTTAAAATATAAGAAAATAAAATATTATGAAATAAATAAGCACATATAAGTGTATATATATATAT ATATATATATATATATATATAATATGTAATATTTTTAAGGAAAAATAAATAAAAAATAAAATTCT TTTTAGTATAGAAATTTATACTTTTTGTCACTTCGTATAAGGGCTGAATATAATATACTCTTTTT CATTCCTGTCTTGGAATGCTTTTCTTATAAATATTTTAAAATAAA Right flanking sequence: Indices 297849 -- 298348 TATTTTGTAAAAATATTTAGTGTAATATTATTTTATATTATATTATATTATAATATTTTATTTTT TAAACCTAGTTCCATTCTTCAAAATGAACATCAGCGATATAGAATTCTTGAATCATGTGACTAAT ATAAAAAATATGGACATCCTACAACTGTTCTCAAAGGAGTAAAAAAATAAAGATATAATAATTAT ATGTATATATATATATTTATTTATTTATTTATTTATAATTTTATGGTGTTTTATTTATTCTTCAT ATAGTTGGATGATATATCACGAACATATTGTTTACATTAATGTATACCTACATAACCATAAGGAT ATTATTGATATAATACAAGATGAACGAATGAATATTATTTTGAAAAAGGTTAAGAGGAAAAGGAA AATATATATTTGTGAATATGTACAGAATGTAAAATATTTTTTAAATAATATATAAATATATATAT ATATATATGTGTTTGTGTGTGTGTGTATATTTTTTTATTTTTTTT Found at i:297848 original size:13 final size:13 Alignment explanation
Indices: 297823--297848 Score: 38 Period size: 13 Copynumber: 2.0 Consensus size: 13 297813 TTAAAATAAA 297823 ATAAAATACATAT 1 ATAAAATACATAT * * 297836 ATAATATATATAT 1 ATAAAATACATAT 297849 TATTTTGTAA Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 13 11 1.00 ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38 Consensus pattern (13 bp): ATAAAATACATAT Left flanking sequence: Indices 297323 -- 297822 GAAATATATAAATATAAATATATATACATATATATATGTATATATTTTATATTTATATTTTATTT TTTTTATTTTTATCCATTCATTTATATTGCATTTACCATTATTAATATTTGAATATTCAAATTTA AAAAGAAAAAAAAAAATTATATGTATACCTTCATATTGTCAAATGTTACAAATATATTTATAGAC AAATATAATTGTAAATATAATATGTGTTTCATAATTTTTATATATTTTTTTTAGAAACCTTTTTT TTTAAAATATAAGAAAATAAAATATTATGAAATAAATAAGCACATATAAGTGTATATATATATAT ATATATATATATATATATATAATATGTAATATTTTTAAGGAAAAATAAATAAAAAATAAAATTCT TTTTAGTATAGAAATTTATACTTTTTGTCACTTCGTATAAGGGCTGAATATAATATACTCTTTTT CATTCCTGTCTTGGAATGCTTTTCTTATAAATATTTTAAAATAAA Right flanking sequence: Indices 297849 -- 298348 TATTTTGTAAAAATATTTAGTGTAATATTATTTTATATTATATTATATTATAATATTTTATTTTT TAAACCTAGTTCCATTCTTCAAAATGAACATCAGCGATATAGAATTCTTGAATCATGTGACTAAT ATAAAAAATATGGACATCCTACAACTGTTCTCAAAGGAGTAAAAAAATAAAGATATAATAATTAT ATGTATATATATATATTTATTTATTTATTTATTTATAATTTTATGGTGTTTTATTTATTCTTCAT ATAGTTGGATGATATATCACGAACATATTGTTTACATTAATGTATACCTACATAACCATAAGGAT ATTATTGATATAATACAAGATGAACGAATGAATATTATTTTGAAAAAGGTTAAGAGGAAAAGGAA AATATATATTTGTGAATATGTACAGAATGTAAAATATTTTTTAAATAATATATAAATATATATAT ATATATATGTGTTTGTGTGTGTGTGTATATTTTTTTATTTTTTTT Found at i:297880 original size:15 final size:13 Alignment explanation
Indices: 297845--297905 Score: 51 Period size: 15 Copynumber: 4.4 Consensus size: 13 297835 TATAATATAT 297845 ATATTATTTTGTA 1 ATATTATTTTGTA * * 297858 AAAATATTTAGTGTA 1 ATATTATTT--TGTA * 297873 ATATTATTTTATA 1 ATATTATTTTGTA * * 297886 TTATATTATATTATA 1 --ATATTATTTTGTA 297901 ATATT 1 ATATT 297906 TTATTTTTTA Statistics Matches: 38, Mismatches: 6, Indels: 8 0.73 0.12 0.15 Matches are distributed among these distances: 13 15 0.39 15 23 0.61 ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56 Consensus pattern (13 bp): ATATTATTTTGTA Left flanking sequence: Indices 297345 -- 297844 TATACATATATATATGTATATATTTTATATTTATATTTTATTTTTTTTATTTTTATCCATTCATT TATATTGCATTTACCATTATTAATATTTGAATATTCAAATTTAAAAAGAAAAAAAAAAATTATAT GTATACCTTCATATTGTCAAATGTTACAAATATATTTATAGACAAATATAATTGTAAATATAATA TGTGTTTCATAATTTTTATATATTTTTTTTAGAAACCTTTTTTTTTAAAATATAAGAAAATAAAA TATTATGAAATAAATAAGCACATATAAGTGTATATATATATATATATATATATATATATATATAA TATGTAATATTTTTAAGGAAAAATAAATAAAAAATAAAATTCTTTTTAGTATAGAAATTTATACT TTTTGTCACTTCGTATAAGGGCTGAATATAATATACTCTTTTTCATTCCTGTCTTGGAATGCTTT TCTTATAAATATTTTAAAATAAAATAAAATACATATATAATATAT Right flanking sequence: Indices 297906 -- 298405 TTATTTTTTAAACCTAGTTCCATTCTTCAAAATGAACATCAGCGATATAGAATTCTTGAATCATG TGACTAATATAAAAAATATGGACATCCTACAACTGTTCTCAAAGGAGTAAAAAAATAAAGATATA ATAATTATATGTATATATATATATTTATTTATTTATTTATTTATAATTTTATGGTGTTTTATTTA TTCTTCATATAGTTGGATGATATATCACGAACATATTGTTTACATTAATGTATACCTACATAACC ATAAGGATATTATTGATATAATACAAGATGAACGAATGAATATTATTTTGAAAAAGGTTAAGAGG AAAAGGAAAATATATATTTGTGAATATGTACAGAATGTAAAATATTTTTTAAATAATATATAAAT ATATATATATATATATGTGTTTGTGTGTGTGTGTATATTTTTTTATTTTTTTTTCCTTCTACAGT TTGAACTTATACTAAGAGATTTAATAAAAATTTATTTCATTCGCT Found at i:298072 original size:12 final size:12 Alignment explanation
Indices: 298040--298084 Score: 55 Period size: 12 Copynumber: 3.8 Consensus size: 12 298030 GATATAATAA * * 298040 TTATATGTATAT 1 TTATATATTTAT * 298052 ATATATATTTAT 1 TTATATATTTAT * 298064 TTATTTATTTAT 1 TTATATATTTAT 298076 TTATA-ATTT 1 TTATATATTT 298085 TATGGTGTTT Statistics Matches: 27, Mismatches: 6, Indels: 1 0.79 0.18 0.03 Matches are distributed among these distances: 11 4 0.15 12 23 0.85 ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64 Consensus pattern (12 bp): TTATATATTTAT Left flanking sequence: Indices 297540 -- 298039 TGTGTTTCATAATTTTTATATATTTTTTTTAGAAACCTTTTTTTTTAAAATATAAGAAAATAAAA TATTATGAAATAAATAAGCACATATAAGTGTATATATATATATATATATATATATATATATATAA TATGTAATATTTTTAAGGAAAAATAAATAAAAAATAAAATTCTTTTTAGTATAGAAATTTATACT TTTTGTCACTTCGTATAAGGGCTGAATATAATATACTCTTTTTCATTCCTGTCTTGGAATGCTTT TCTTATAAATATTTTAAAATAAAATAAAATACATATATAATATATATATTATTTTGTAAAAATAT TTAGTGTAATATTATTTTATATTATATTATATTATAATATTTTATTTTTTAAACCTAGTTCCATT CTTCAAAATGAACATCAGCGATATAGAATTCTTGAATCATGTGACTAATATAAAAAATATGGACA TCCTACAACTGTTCTCAAAGGAGTAAAAAAATAAAGATATAATAA Right flanking sequence: Indices 298085 -- 298584 TATGGTGTTTTATTTATTCTTCATATAGTTGGATGATATATCACGAACATATTGTTTACATTAAT GTATACCTACATAACCATAAGGATATTATTGATATAATACAAGATGAACGAATGAATATTATTTT GAAAAAGGTTAAGAGGAAAAGGAAAATATATATTTGTGAATATGTACAGAATGTAAAATATTTTT TAAATAATATATAAATATATATATATATATATGTGTTTGTGTGTGTGTGTATATTTTTTTATTTT TTTTTCCTTCTACAGTTTGAACTTATACTAAGAGATTTAATAAAAATTTATTTCATTCGCTTCCT ATATTTTGAAAAGAAAGAAGAAAATATTTCTATACTTAACAAAAATGAGAAAGTACAATATGAAA ATATGATGGATGAAGATACATTGAATCATATACGTATATCAAGTTATATATTGGTACATCCATAC CATACCCATAAAATCATTATATTATATTATATATATATATATATA Found at