TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: 97739982 P. falciparum 3D7 GENOMIC chr8 Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 1323195 ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40 Found at i: i:77348 original size:26 final size:25 Alignment explanation
Indices: 77319--77402 Score: 94 Period size: 25 Copynumber: 3.3 Consensus size: 25 77309 AAAATAAAGG * * 77319 AAAAAAATTAGGAAAAAAAATTAGA 1 AAAAAAAATAGGAAAAAAAAATAGA * * 77344 AAAAAAAATGGTAAAAAAAAATAGGAA 1 AAAAAAAATAGGAAAAAAAAATA-G-A * * * 77371 AAAAAAAATAAG-AAAAAAACTAGG 1 AAAAAAAATAGGAAAAAAAAATAGA 77395 AAAAAAAA 1 AAAAAAAA 77403 CGTGTTTTCT Statistics Matches: 48, Mismatches: 9, Indels: 5 0.77 0.15 0.08 Matches are distributed among these distances: 24 8 0.17 25 20 0.42 26 10 0.21 27 10 0.21 ACGTcount: A:0.76, C:0.01, G:0.12, T:0.11 Consensus pattern (25 bp): AAAAAAAATAGGAAAAAAAAATAGA Left flanking sequence: Indices 76819 -- 77318 CATGTCATAATTAAAAAAAAAAAACAATAAAAATTATTTATTTAAATTATTTGCTATTAGTTCCT ATTTCGTCAAATATATGAAAATATTACATTCTAAAAATTTAGGAACTTCATATATATATAATATA TATATATATATATATATATAAATATTCGACAATTAACGAAAATATTAACATATGCACATTGTATT TATAAAGATACTTATGTGTAAATATATATATATATATTGCTAATCATATATTTTTTATAATAATC TTTTAAATAAATAATGATGAGTTGATATTCATTGTAAGTTTCTTTAAAAAAAAAAAAAAATTATT TTAACTTGTATGCAAAATTGTGAAACGAACAGAAAAATGTATTGTTAATATACAAAATATCAATT CAAATAAAATTAGTATGAATAATCAACAGTTCGTCTAATATTAAGATGTGAAACAAGGAAATGTA ATAAATCAAAACTTGAATAAAATCGAAAAAAAATGAAAATAAAGG Right flanking sequence: Indices 77403 -- 77902 CGTGTTTTCTTATTTGTGTAAAACATTATGTACTTGAACACAAAATGATAATAATTATATGAAAC ATATATATATTTATGTATTTATTTATTTATTTATTTATTATTTGTTTATCTTTTATTTACTTTTA AATCTTTCTTTCTTTTTTTTTTTTTTTTTCCTGTGTGTACTTTACTTTTCATAAATATGACTTAC TACTAATGGAATATAATAAGGTTATATATACTAAAATTTTATAACAAAAGAATTAAATCATCTAA GAAATACAGCTAGTCTTTCGACATTAAAGCGAATATAAGGAAGCATTCTATATAATTCCCGTTCT TCTTGCCATGTTAAATTTAAATTTCGATCTTTAATATTTTGTTTTAAATATTTTTTAAATGTTGC CTCACTAGGAACAGCATCATCTAGTTTTACTCCTCTTTGAAAAGCCAACTTTACATCTGTATTTC CTTGATTCACTGTTTCAAGAACAACATCATAAAGTGTATCATTTA Found at i:77403 original size:13 final size:13 Alignment explanation
Indices: 77319--77402 Score: 103 Period size: 13 Copynumber: 6.5 Consensus size: 13 77309 AAAATAAAGG * 77319 AAAAAAATTAGGA 1 AAAAAAAATAGGA * 77332 AAAAAAATTA-GA 1 AAAAAAAATAGGA * * 77344 AAAAAAAATGGTA 1 AAAAAAAATAGGA 77357 AAAAAAAATAGGAA 1 AAAAAAAATAGG-A * 77371 AAAAAAAATAAG- 1 AAAAAAAATAGGA * 77383 AAAAAAACTAGGA 1 AAAAAAAATAGGA 77396 AAAAAAA 1 AAAAAAA 77403 CGTGTTTTCT Statistics Matches: 60, Mismatches: 8, Indels: 6 0.81 0.11 0.08 Matches are distributed among these distances: 12 20 0.33 13 28 0.47 14 12 0.20 ACGTcount: A:0.76, C:0.01, G:0.12, T:0.11 Consensus pattern (13 bp): AAAAAAAATAGGA Left flanking sequence: Indices 76819 -- 77318 CATGTCATAATTAAAAAAAAAAAACAATAAAAATTATTTATTTAAATTATTTGCTATTAGTTCCT ATTTCGTCAAATATATGAAAATATTACATTCTAAAAATTTAGGAACTTCATATATATATAATATA TATATATATATATATATATAAATATTCGACAATTAACGAAAATATTAACATATGCACATTGTATT TATAAAGATACTTATGTGTAAATATATATATATATATTGCTAATCATATATTTTTTATAATAATC TTTTAAATAAATAATGATGAGTTGATATTCATTGTAAGTTTCTTTAAAAAAAAAAAAAAATTATT TTAACTTGTATGCAAAATTGTGAAACGAACAGAAAAATGTATTGTTAATATACAAAATATCAATT CAAATAAAATTAGTATGAATAATCAACAGTTCGTCTAATATTAAGATGTGAAACAAGGAAATGTA ATAAATCAAAACTTGAATAAAATCGAAAAAAAATGAAAATAAAGG Right flanking sequence: Indices 77403 -- 77902 CGTGTTTTCTTATTTGTGTAAAACATTATGTACTTGAACACAAAATGATAATAATTATATGAAAC ATATATATATTTATGTATTTATTTATTTATTTATTTATTATTTGTTTATCTTTTATTTACTTTTA AATCTTTCTTTCTTTTTTTTTTTTTTTTTCCTGTGTGTACTTTACTTTTCATAAATATGACTTAC TACTAATGGAATATAATAAGGTTATATATACTAAAATTTTATAACAAAAGAATTAAATCATCTAA GAAATACAGCTAGTCTTTCGACATTAAAGCGAATATAAGGAAGCATTCTATATAATTCCCGTTCT TCTTGCCATGTTAAATTTAAATTTCGATCTTTAATATTTTGTTTTAAATATTTTTTAAATGTTGC CTCACTAGGAACAGCATCATCTAGTTTTACTCCTCTTTGAAAAGCCAACTTTACATCTGTATTTC CTTGATTCACTGTTTCAAGAACAACATCATAAAGTGTATCATTTA Found at i:78135 original size:11 final size:11 Alignment explanation
Indices: 78121--78144 Score: 34 Period size: 11 Copynumber: 2.2 Consensus size: 11 78111 AAATAAATTC 78121 AAAACAAACAA 1 AAAACAAACAA ** 78132 AAAATTAACAA 1 AAAACAAACAA 78143 AA 1 AA 78145 GCGAAAAAAA Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.79, C:0.12, G:0.00, T:0.08 Consensus pattern (11 bp): AAAACAAACAA Left flanking sequence: Indices 77621 -- 78120 ATATATACTAAAATTTTATAACAAAAGAATTAAATCATCTAAGAAATACAGCTAGTCTTTCGACA TTAAAGCGAATATAAGGAAGCATTCTATATAATTCCCGTTCTTCTTGCCATGTTAAATTTAAATT TCGATCTTTAATATTTTGTTTTAAATATTTTTTAAATGTTGCCTCACTAGGAACAGCATCATCTA GTTTTACTCCTCTTTGAAAAGCCAACTTTACATCTGTATTTCCTTGATTCACTGTTTCAAGAACA ACATCATAAAGTGTATCATTTATTTCTGAATTATGCCATATGGAACTTTTTCTTCCTTTAGTCAT ATAAATACCTCCTATAAGTGTTATTAATGCTAAGGCTCCTATAGCTGCTCCTGATATAAGAGCAA ATTTCTTTTTTTTATCATATTTCTCTAATTTTAAATTTACTAAACTTAATTTATCCTTAACCCAT TCCTTCCCATAATCCTTTTTACACGTACAAGGGGAAAATAAATTC Right flanking sequence: Indices 78145 -- 78644 GCGAAAAAAATAAAAACTTTCATTTTAAAAAAATAATAAAAATAAATAAAATAAATAATAATAAT AAAATATATATATATATATATAATATTATGATACATATATATATTTATGTATTGATAATATTCAT ATATCTATGGATGAAAAAAAAAAAAAAAAATTATATTAAATGAGATGAAAGGAATCTATAAAAAT TGTAAATTAATAAATAAATAAATATATATATATATATATATATATATATTTTTTTTTTTATGATT AATTTATTTATTCAAAACACAATATTTCTTTATTCTTAATATATATATATAATATATATACAAAC ACACAATTGTGTCCACATTTTTTTTTTTTTCTCTTATAATTCCACATTTTGTATTTATAAACTTA TTTATTTATTTTGCATGTATAACTAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTG GCCAAATTTATAATAATATATAACTATTTTTATTTATAAAAAAAA Found at i:78203 original size:22 final size:21 Alignment explanation
Indices: 78170--78212 Score: 70 Period size: 22 Copynumber: 2.0 Consensus size: 21 78160 ACTTTCATTT 78170 TAAAAAAATAATAAAAATAAA 1 TAAAAAAATAATAAAAATAAA * 78191 TAAAATAAATAATAATAATAAA 1 TAAAA-AAATAATAAAAATAAA 78213 ATATATATAT Statistics Matches: 20, Mismatches: 1, Indels: 1 0.91 0.05 0.05 Matches are distributed among these distances: 21 5 0.25 22 15 0.75 ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23 Consensus pattern (21 bp): TAAAAAAATAATAAAAATAAA Left flanking sequence: Indices 77670 -- 78169 AGCTAGTCTTTCGACATTAAAGCGAATATAAGGAAGCATTCTATATAATTCCCGTTCTTCTTGCC ATGTTAAATTTAAATTTCGATCTTTAATATTTTGTTTTAAATATTTTTTAAATGTTGCCTCACTA GGAACAGCATCATCTAGTTTTACTCCTCTTTGAAAAGCCAACTTTACATCTGTATTTCCTTGATT CACTGTTTCAAGAACAACATCATAAAGTGTATCATTTATTTCTGAATTATGCCATATGGAACTTT TTCTTCCTTTAGTCATATAAATACCTCCTATAAGTGTTATTAATGCTAAGGCTCCTATAGCTGCT CCTGATATAAGAGCAAATTTCTTTTTTTTATCATATTTCTCTAATTTTAAATTTACTAAACTTAA TTTATCCTTAACCCATTCCTTCCCATAATCCTTTTTACACGTACAAGGGGAAAATAAATTCAAAA CAAACAAAAAATTAACAAAAGCGAAAAAAATAAAAACTTTCATTT Right flanking sequence: Indices 78213 -- 78712 ATATATATATATATATATAATATTATGATACATATATATATTTATGTATTGATAATATTCATATA TCTATGGATGAAAAAAAAAAAAAAAAATTATATTAAATGAGATGAAAGGAATCTATAAAAATTGT AAATTAATAAATAAATAAATATATATATATATATATATATATATATTTTTTTTTTTATGATTAAT TTATTTATTCAAAACACAATATTTCTTTATTCTTAATATATATATATAATATATATACAAACACA CAATTGTGTCCACATTTTTTTTTTTTTCTCTTATAATTCCACATTTTGTATTTATAAACTTATTT ATTTATTTTGCATGTATAACTAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTGGCC AAATTTATAATAATATATAACTATTTTTATTTATAAAAAAAAAAAAAAAAATTATGAAATGTGGA CAGATTTATATTAATATATGATTATTCTTATTTATAAAACCGATA Found at i:78247 original size:21 final size:19 Alignment explanation
Indices: 78208--78252 Score: 58 Period size: 21 Copynumber: 2.3 Consensus size: 19 78198 AATAATAATA * * 78208 ATAAAATATATATATATAT 1 ATATAATATATATACATAT 78227 ATATAATATTATGATACATAT 1 ATATAATA-TAT-ATACATAT 78248 ATATA 1 ATATA 78253 TTTATGTATT Statistics Matches: 22, Mismatches: 2, Indels: 2 0.85 0.08 0.08 Matches are distributed among these distances: 19 7 0.32 20 3 0.14 21 12 0.55 ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42 Consensus pattern (19 bp): ATATAATATATATACATAT Left flanking sequence: Indices 77708 -- 78207 TTCTATATAATTCCCGTTCTTCTTGCCATGTTAAATTTAAATTTCGATCTTTAATATTTTGTTTT AAATATTTTTTAAATGTTGCCTCACTAGGAACAGCATCATCTAGTTTTACTCCTCTTTGAAAAGC CAACTTTACATCTGTATTTCCTTGATTCACTGTTTCAAGAACAACATCATAAAGTGTATCATTTA TTTCTGAATTATGCCATATGGAACTTTTTCTTCCTTTAGTCATATAAATACCTCCTATAAGTGTT ATTAATGCTAAGGCTCCTATAGCTGCTCCTGATATAAGAGCAAATTTCTTTTTTTTATCATATTT CTCTAATTTTAAATTTACTAAACTTAATTTATCCTTAACCCATTCCTTCCCATAATCCTTTTTAC ACGTACAAGGGGAAAATAAATTCAAAACAAACAAAAAATTAACAAAAGCGAAAAAAATAAAAACT TTCATTTTAAAAAAATAATAAAAATAAATAAAATAAATAATAATA Right flanking sequence: Indices 78253 -- 78752 TTTATGTATTGATAATATTCATATATCTATGGATGAAAAAAAAAAAAAAAAATTATATTAAATGA GATGAAAGGAATCTATAAAAATTGTAAATTAATAAATAAATAAATATATATATATATATATATAT ATATATTTTTTTTTTTATGATTAATTTATTTATTCAAAACACAATATTTCTTTATTCTTAATATA TATATATAATATATATACAAACACACAATTGTGTCCACATTTTTTTTTTTTTCTCTTATAATTCC ACATTTTGTATTTATAAACTTATTTATTTATTTTGCATGTATAACTAAGAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAATGTGGCCAAATTTATAATAATATATAACTATTTTTATTTATAAAAAA AAAAAAAAAAATTATGAAATGTGGACAGATTTATATTAATATATGATTATTCTTATTTATAAAAC CGATAAAAAAAAAAAAAAAAAAAAAATTAAAGGATAACAATTATT Found at i:78275 original size:29 final size:29 Alignment explanation
Indices: 78195--78282 Score: 81 Period size: 29 Copynumber: 3.0 Consensus size: 29 78185 AATAAATAAA * * * * 78195 ATAAATAATAATAATAAAATATATATATAT 1 ATATATAAT-ATAATGATACATATATATAT * 78225 ATATATAATATTATGATACATATATATAT 1 ATATATAATATAATGATACATATATATAT * * * * * 78254 TTATGTATTGATAAT-ATTCATATATCTAT 1 ATATATAAT-ATAATGATACATATATATAT 78283 GGATGAAAAA Statistics Matches: 46, Mismatches: 11, Indels: 3 0.77 0.18 0.05 Matches are distributed among these distances: 29 34 0.74 30 12 0.26 ACGTcount: A:0.49, C:0.03, G:0.03, T:0.44 Consensus pattern (29 bp): ATATATAATATAATGATACATATATATAT Left flanking sequence: Indices 77695 -- 78194 ATATAAGGAAGCATTCTATATAATTCCCGTTCTTCTTGCCATGTTAAATTTAAATTTCGATCTTT AATATTTTGTTTTAAATATTTTTTAAATGTTGCCTCACTAGGAACAGCATCATCTAGTTTTACTC CTCTTTGAAAAGCCAACTTTACATCTGTATTTCCTTGATTCACTGTTTCAAGAACAACATCATAA AGTGTATCATTTATTTCTGAATTATGCCATATGGAACTTTTTCTTCCTTTAGTCATATAAATACC TCCTATAAGTGTTATTAATGCTAAGGCTCCTATAGCTGCTCCTGATATAAGAGCAAATTTCTTTT TTTTATCATATTTCTCTAATTTTAAATTTACTAAACTTAATTTATCCTTAACCCATTCCTTCCCA TAATCCTTTTTACACGTACAAGGGGAAAATAAATTCAAAACAAACAAAAAATTAACAAAAGCGAA AAAAATAAAAACTTTCATTTTAAAAAAATAATAAAAATAAATAAA Right flanking sequence: Indices 78283 -- 78782 GGATGAAAAAAAAAAAAAAAAATTATATTAAATGAGATGAAAGGAATCTATAAAAATTGTAAATT AATAAATAAATAAATATATATATATATATATATATATATATTTTTTTTTTTATGATTAATTTATT TATTCAAAACACAATATTTCTTTATTCTTAATATATATATATAATATATATACAAACACACAATT GTGTCCACATTTTTTTTTTTTTCTCTTATAATTCCACATTTTGTATTTATAAACTTATTTATTTA TTTTGCATGTATAACTAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGTGGCCAAATT TATAATAATATATAACTATTTTTATTTATAAAAAAAAAAAAAAAAATTATGAAATGTGGACAGAT TTATATTAATATATGATTATTCTTATTTATAAAACCGATAAAAAAAAAAAAAAAAAAAAAATTAA AGGATAACAATTATTTATGTGGCTTTAACAAAAAAAAAAAAATAA Found at i:78363 original size:12 final size:12 Alignment explanation
Indices: 78342--78388 Score: 52 Period size: 12 Copynumber: 3.9 Consensus size: 12 78332 ATAAAAATTG * * 78342 TAAATTAATAAA 1 TAAATAAATATA 78354 TAAATAAATATA 1 TAAATAAATATA * * 78366 TATATATATATA 1 TAAATAAATATA * * 78378 TATATATATAT 1 TAAATAAATAT 78389 TTTTTTTTTT Statistics Matches: 31, Mismatches: 4, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 12 31 1.00 ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43 Consensus pattern (12 bp): TAAATAAATATA Left flanking sequence: Indices 77842 -- 78341 TTTACATCTGTATTTCCTTGATTCACTGTTTCAAGAACAACATCATAAAGTGTATCATTTATTTC TGAATTATGCCATATGGAACTTTTTCTTCCTTTAGTCATATAAATACCTCCTATAAGTGTTATTA ATGCTAAGGCTCCTATAGCTGCTCCTGATATAAGAGCAAATTTCTTTTTTTTATCATATTTCTCT AATTTTAAATTTACTAAACTTAATTTATCCTTAACCCATTCCTTCCCATAATCCTTTTTACACGT ACAAGGGGAAAATAAATTCAAAACAAACAAAAAATTAACAAAAGCGAAAAAAATAAAAACTTTCA TTTTAAAAAAATAATAAAAATAAATAAAATAAATAATAATAATAAAATATATATATATATATATA ATATTATGATACATATATATATTTATGTATTGATAATATTCATATATCTATGGATGAAAAAAAAA AAAAAAAATTATATTAAATGAGATGAAAGGAATCTATAAAAATTG Right flanking sequence: Indices 78389 -- 78888 TTTTTTTTTTATGATTAATTTATTTATTCAAAACACAATATTTCTTTATTCTTAATATATATATA TAATATATATACAAACACACAATTGTGTCCACATTTTTTTTTTTTTCTCTTATAATTCCACATTT TGTATTTATAAACTTATTTATTTATTTTGCATGTATAACTAAGAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAATGTGGCCAAATTTATAATAATATATAACTATTTTTATTTATAAAAAAAAAAAA AAAAATTATGAAATGTGGACAGATTTATATTAATATATGATTATTCTTATTTATAAAACCGATAA AAAAAAAAAAAAAAAAAAAATTAAAGGATAACAATTATTTATGTGGCTTTAACAAAAAAAAAAAA ATAAAATAAAATAATAAATAAATAAAATAATAATAAATATACATACACTAGTAATTATGCTTATT TCATTACTTTAAATAAAAGGCATATACTAAATAATATTAAATATT Found at i:78645 original size:66 final size:66 Alignment explanation
Indices: 78571--78731 Score: 216 Period size: 66 Copynumber: 2.4 Consensus size: 66 78561 GAAAAAAAAA * * 78571 AAAAAAAAAAAAAAAAAAAAAAAAATGTGGCCAAATTTATAATAATATATAACTATTTTTATTTA 1 AAAAAAAAAAAAAAAAAAAAAAAAATGTGGACAAATTTATAATAATATATAACTATTCTTATTTA 78636 T 66 T ** ** * * * * 78637 AAAAAAAAAAAAAAAAATTATGAAATGTGGACAGATTTATATTAATATATGATTATTCTTATTTA 1 AAAAAAAAAAAAAAAAAAAAAAAAATGTGGACAAATTTATAATAATATATAACTATTCTTATTTA 78702 T 66 T 78703 AAAACCGATAAAAAAAAAAAAAAAAAAAA 1 AAAA---A-AAAAAAAAAAAAAAAAAAAA 78732 AATTAAAGGA Statistics Matches: 77, Mismatches: 14, Indels: 4 0.81 0.15 0.04 Matches are distributed among these distances: 66 60 0.78 69 1 0.01 70 16 0.21 ACGTcount: A:0.61, C:0.04, G:0.06, T:0.28 Consensus pattern (66 bp): AAAAAAAAAAAAAAAAAAAAAAAAATGTGGACAAATTTATAATAATATATAACTATTCTTATTTA T Left flanking sequence: Indices 78071 -- 78570 CCCATTCCTTCCCATAATCCTTTTTACACGTACAAGGGGAAAATAAATTCAAAACAAACAAAAAA TTAACAAAAGCGAAAAAAATAAAAACTTTCATTTTAAAAAAATAATAAAAATAAATAAAATAAAT AATAATAATAAAATATATATATATATATATAATATTATGATACATATATATATTTATGTATTGAT AATATTCATATATCTATGGATGAAAAAAAAAAAAAAAAATTATATTAAATGAGATGAAAGGAATC TATAAAAATTGTAAATTAATAAATAAATAAATATATATATATATATATATATATATATTTTTTTT TTTATGATTAATTTATTTATTCAAAACACAATATTTCTTTATTCTTAATATATATATATAATATA TATACAAACACACAATTGTGTCCACATTTTTTTTTTTTTCTCTTATAATTCCACATTTTGTATTT ATAAACTTATTTATTTATTTTGCATGTATAACTAAGAAAAAAAAA Right flanking sequence: Indices 78732 -- 79231 AATTAAAGGATAACAATTATTTATGTGGCTTTAACAAAAAAAAAAAAATAAAATAAAATAATAAA TAAATAAAATAATAATAAATATACATACACTAGTAATTATGCTTATTTCATTACTTTAAATAAAA GGCATATACTAAATAATATTAAATATTTGATACATTTATTTCTTAAAAATCAAGAATAATAATAA TTATATAGAGTGTTATTTAAAAAAGGTTATAAATAAGCACGTACTTTCTATGAATAAAAATTAAT ATAACTCAACAAGTATTACTATATTGTAATGTATTATAATGTATTGTATTTTTTTTATTTTTGGA GAAAAGGCTAATTTAAAAATTTTCTTTAAATATTATTCAAACATATATACATATTATATATATAT ATATATATACATAGATATATGTATTTATTTATTTATTTATTTATTTATTTAATGATTTATATGAA GACATAATAAAAGCATATTATATATATCAACAAAAAATATATTAA Found at i:78801 original size:16 final size:16 Alignment explanation
Indices: 78769--78817 Score: 68 Period size: 16 Copynumber: 3.1 Consensus size: 16 78759 GCTTTAACAA * * 78769 AAAAAAAAAAATAAAAT 1 AAAATAATAAAT-AAAT 78786 AAAATAATAAATAAAT 1 AAAATAATAAATAAAT 78802 AAAATAAT-AATAAAT 1 AAAATAATAAATAAAT 78817 A 1 A 78818 TACATACACT Statistics Matches: 30, Mismatches: 2, Indels: 2 0.88 0.06 0.06 Matches are distributed among these distances: 15 8 0.27 16 12 0.40 17 10 0.33 ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20 Consensus pattern (16 bp): AAAATAATAAATAAAT Left flanking sequence: Indices 78269 -- 78768 ATTCATATATCTATGGATGAAAAAAAAAAAAAAAAATTATATTAAATGAGATGAAAGGAATCTAT AAAAATTGTAAATTAATAAATAAATAAATATATATATATATATATATATATATATTTTTTTTTTT ATGATTAATTTATTTATTCAAAACACAATATTTCTTTATTCTTAATATATATATATAATATATAT ACAAACACACAATTGTGTCCACATTTTTTTTTTTTTCTCTTATAATTCCACATTTTGTATTTATA AACTTATTTATTTATTTTGCATGTATAACTAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AATGTGGCCAAATTTATAATAATATATAACTATTTTTATTTATAAAAAAAAAAAAAAAAATTATG AAATGTGGACAGATTTATATTAATATATGATTATTCTTATTTATAAAACCGATAAAAAAAAAAAA AAAAAAAAAATTAAAGGATAACAATTATTTATGTGGCTTTAACAA Right flanking sequence: Indices 78818 -- 79317 TACATACACTAGTAATTATGCTTATTTCATTACTTTAAATAAAAGGCATATACTAAATAATATTA AATATTTGATACATTTATTTCTTAAAAATCAAGAATAATAATAATTATATAGAGTGTTATTTAAA AAAGGTTATAAATAAGCACGTACTTTCTATGAATAAAAATTAATATAACTCAACAAGTATTACTA TATTGTAATGTATTATAATGTATTGTATTTTTTTTATTTTTGGAGAAAAGGCTAATTTAAAAATT TTCTTTAAATATTATTCAAACATATATACATATTATATATATATATATATATACATAGATATATG TATTTATTTATTTATTTATTTATTTATTTAATGATTTATATGAAGACATAATAAAAGCATATTAT ATATATCAACAAAAAATATATTAATATAAGTATATATTTAATATATTTATTTATTTTTATTTAAT TCAAGATTATGAAGTCATTATACGTTATATAAATAATTATCATTA Found at i:79034 original size:15 final size:15 Alignment explanation
Indices: 79011--79041 Score: 48 Period size: 15 Copynumber: 2.1 Consensus size: 15 79001 CAAGTATTAC * 79011 TATATTGTAATGTAT 1 TATAATGTAATGTAT * 79026 TATAATGTATTGTAT 1 TATAATGTAATGTAT 79041 T 1 T 79042 TTTTTTATTT Statistics Matches: 14, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 15 14 1.00 ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55 Consensus pattern (15 bp): TATAATGTAATGTAT Left flanking sequence: Indices 78511 -- 79010 CCACATTTTGTATTTATAAACTTATTTATTTATTTTGCATGTATAACTAAGAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAATGTGGCCAAATTTATAATAATATATAACTATTTTTATTTATAAAA AAAAAAAAAAAAATTATGAAATGTGGACAGATTTATATTAATATATGATTATTCTTATTTATAAA ACCGATAAAAAAAAAAAAAAAAAAAAAATTAAAGGATAACAATTATTTATGTGGCTTTAACAAAA AAAAAAAAATAAAATAAAATAATAAATAAATAAAATAATAATAAATATACATACACTAGTAATTA TGCTTATTTCATTACTTTAAATAAAAGGCATATACTAAATAATATTAAATATTTGATACATTTAT TTCTTAAAAATCAAGAATAATAATAATTATATAGAGTGTTATTTAAAAAAGGTTATAAATAAGCA CGTACTTTCTATGAATAAAAATTAATATAACTCAACAAGTATTAC Right flanking sequence: Indices 79042 -- 79541 TTTTTTATTTTTGGAGAAAAGGCTAATTTAAAAATTTTCTTTAAATATTATTCAAACATATATAC ATATTATATATATATATATATATACATAGATATATGTATTTATTTATTTATTTATTTATTTATTT AATGATTTATATGAAGACATAATAAAAGCATATTATATATATCAACAAAAAATATATTAATATAA GTATATATTTAATATATTTATTTATTTTTATTTAATTCAAGATTATGAAGTCATTATACGTTATA TAAATAATTATCATTATTAAAACTTAAATTTTTGAAACGTTCTTATATAACAAAAAGCACTTTAA ATGCACAAGAGATTTAAAAACCTCATCCCTTTTCTTCAAATATATAAATAAAGAATAAGTTCCTA TACTATTTTTATGAAATTGGAAAAAATTAAAATATAATTAAAGACAATTCTTTTAAAATGAGTTT ATTATACATGTGTATGCACGGTAATAACCAAAAAAAGAAAAAAAA Found at i:79250 original size:17 final size:17 Alignment explanation
Indices: 79223--79263 Score: 54 Period size: 17 Copynumber: 2.5 Consensus size: 17 79213 TCAACAAAAA 79223 ATATA-TTAATATAAGT 1 ATATATTTAATATAAGT ** 79239 ATATATTTAATATATTT 1 ATATATTTAATATAAGT * 79256 ATTTATTT 1 ATATATTT 79264 TTATTTAATT Statistics Matches: 21, Mismatches: 3, Indels: 1 0.84 0.12 0.04 Matches are distributed among these distances: 16 5 0.24 17 16 0.76 ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56 Consensus pattern (17 bp): ATATATTTAATATAAGT Left flanking sequence: Indices 78723 -- 79222 AAAAAAAAAAATTAAAGGATAACAATTATTTATGTGGCTTTAACAAAAAAAAAAAAATAAAATAA AATAATAAATAAATAAAATAATAATAAATATACATACACTAGTAATTATGCTTATTTCATTACTT TAAATAAAAGGCATATACTAAATAATATTAAATATTTGATACATTTATTTCTTAAAAATCAAGAA TAATAATAATTATATAGAGTGTTATTTAAAAAAGGTTATAAATAAGCACGTACTTTCTATGAATA AAAATTAATATAACTCAACAAGTATTACTATATTGTAATGTATTATAATGTATTGTATTTTTTTT ATTTTTGGAGAAAAGGCTAATTTAAAAATTTTCTTTAAATATTATTCAAACATATATACATATTA TATATATATATATATATACATAGATATATGTATTTATTTATTTATTTATTTATTTATTTAATGAT TTATATGAAGACATAATAAAAGCATATTATATATATCAACAAAAA Right flanking sequence: Indices 79264 -- 79763 TTATTTAATTCAAGATTATGAAGTCATTATACGTTATATAAATAATTATCATTATTAAAACTTAA ATTTTTGAAACGTTCTTATATAACAAAAAGCACTTTAAATGCACAAGAGATTTAAAAACCTCATC CCTTTTCTTCAAATATATAAATAAAGAATAAGTTCCTATACTATTTTTATGAAATTGGAAAAAAT TAAAATATAATTAAAGACAATTCTTTTAAAATGAGTTTATTATACATGTGTATGCACGGTAATAA CCAAAAAAAGAAAAAAAAAAAAAAGAAAAAAAAGTGGCACTTAATAAAAAGTTACATTTTGTTAT ATATGTTATTACATGTATCAATCCTTATTCTCATAAAAAATGAAAAAAATATATGCCTTTCTAGA TCATACACATAATTATATATATGTCTTATATACAAATAGAATTATTCTTAGCAATTTTTATTTAT TACATAAAAATATTATTTACTTCAATATATATATATATATATATG Found at i:79546 original size:15 final size:15 Alignment explanation
Indices: 79526--79556 Score: 62 Period size: 15 Copynumber: 2.1 Consensus size: 15 79516 GGTAATAACC 79526 AAAAAAAGAAAAAAA 1 AAAAAAAGAAAAAAA 79541 AAAAAAAGAAAAAAA 1 AAAAAAAGAAAAAAA 79556 A 1 A 79557 GTGGCACTTA Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 15 16 1.00 ACGTcount: A:0.94, C:0.00, G:0.06, T:0.00 Consensus pattern (15 bp): AAAAAAAGAAAAAAA Left flanking sequence: Indices 79026 -- 79525 TATAATGTATTGTATTTTTTTTATTTTTGGAGAAAAGGCTAATTTAAAAATTTTCTTTAAATATT ATTCAAACATATATACATATTATATATATATATATATATACATAGATATATGTATTTATTTATTT ATTTATTTATTTATTTAATGATTTATATGAAGACATAATAAAAGCATATTATATATATCAACAAA AAATATATTAATATAAGTATATATTTAATATATTTATTTATTTTTATTTAATTCAAGATTATGAA GTCATTATACGTTATATAAATAATTATCATTATTAAAACTTAAATTTTTGAAACGTTCTTATATA ACAAAAAGCACTTTAAATGCACAAGAGATTTAAAAACCTCATCCCTTTTCTTCAAATATATAAAT AAAGAATAAGTTCCTATACTATTTTTATGAAATTGGAAAAAATTAAAATATAATTAAAGACAATT CTTTTAAAATGAGTTTATTATACATGTGTATGCACGGTAATAACC Right flanking sequence: Indices 79557 -- 80056 GTGGCACTTAATAAAAAGTTACATTTTGTTATATATGTTATTACATGTATCAATCCTTATTCTCA TAAAAAATGAAAAAAATATATGCCTTTCTAGATCATACACATAATTATATATATGTCTTATATAC AAATAGAATTATTCTTAGCAATTTTTATTTATTACATAAAAATATTATTTACTTCAATATATATA TATATATATATGTATATACATTTTTAACTTTTCTGTATTATCTTACTTAAAAATAAAGAAAACAA ATAAAATAATGTATTTGTATATTTATATTTTTTATTAATTTTTTTTTTTTTTTTTTTGTGTCTAA TATGGAATGCTCATAATAGCTGCTTTGTGTTTATAACAATTGGACAAGTTCAAATTTTTATAAGA AAAAAAAAAAAACAAATAAAAATATATATACATATATATTATAATTTATATATTTTGCGTAGAAA CAAATTTTATATTTTTTTTTATTATATTATAAATTTTTCTTATAT Found at i:79860 original size:13 final size:13 Alignment explanation
Indices: 79836--79873 Score: 48 Period size: 13 Copynumber: 3.0 Consensus size: 13 79826 TGTATTTGTA * 79836 TATTTATATTTTT 1 TATTTATTTTTTT * 79849 TATTAATTTTTTT 1 TATTTATTTTTTT * 79862 T-TTTTTTTTTTT 1 TATTTATTTTTTT 79874 GTGTCTAATA Statistics Matches: 21, Mismatches: 4, Indels: 1 0.81 0.15 0.04 Matches are distributed among these distances: 12 9 0.43 13 12 0.57 ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84 Consensus pattern (13 bp): TATTTATTTTTTT Left flanking sequence: Indices 79336 -- 79835 AAACGTTCTTATATAACAAAAAGCACTTTAAATGCACAAGAGATTTAAAAACCTCATCCCTTTTC TTCAAATATATAAATAAAGAATAAGTTCCTATACTATTTTTATGAAATTGGAAAAAATTAAAATA TAATTAAAGACAATTCTTTTAAAATGAGTTTATTATACATGTGTATGCACGGTAATAACCAAAAA AAGAAAAAAAAAAAAAAGAAAAAAAAGTGGCACTTAATAAAAAGTTACATTTTGTTATATATGTT ATTACATGTATCAATCCTTATTCTCATAAAAAATGAAAAAAATATATGCCTTTCTAGATCATACA CATAATTATATATATGTCTTATATACAAATAGAATTATTCTTAGCAATTTTTATTTATTACATAA AAATATTATTTACTTCAATATATATATATATATATATGTATATACATTTTTAACTTTTCTGTATT ATCTTACTTAAAAATAAAGAAAACAAATAAAATAATGTATTTGTA Right flanking sequence: Indices 79874 -- 80373 GTGTCTAATATGGAATGCTCATAATAGCTGCTTTGTGTTTATAACAATTGGACAAGTTCAAATTT TTATAAGAAAAAAAAAAAAACAAATAAAAATATATATACATATATATTATAATTTATATATTTTG CGTAGAAACAAATTTTATATTTTTTTTTATTATATTATAAATTTTTCTTATATTAAGAATTGTAT ATATATATATATATATATATATATAATACGATGAAGTCCTATTTTTTTTTTTTTTTTTTTTTTTT CTTATATCATTCTTATGGACTTTAATGAAAAAAAGTAACACTTGTCTTTTTATATATACATAAAT TTTTATAACTCCTAATATATATATATATATATATATATATATATATATATATTTATTTATTTATT TATATATTTGTCTTTTGTTATGTCCTCATATTTATCTTCCAAGTATCAAAACAATTTATTGTAAT TTTTTTTTCAACCTTCCATTCTATCATATGTATCATATATATATA Found at i:80064 original size:18 final size:18 Alignment explanation
Indices: 80027--80064 Score: 55 Period size: 18 Copynumber: 2.1 Consensus size: 18 80017 TTTATATTTT * 80027 TTTTTATTATATTATAAA 1 TTTTTATTATATTAAAAA * * 80045 TTTTTCTTATATTAAGAA 1 TTTTTATTATATTAAAAA 80063 TT 1 TT 80065 GTATATATAT Statistics Matches: 17, Mismatches: 3, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 18 17 1.00 ACGTcount: A:0.34, C:0.03, G:0.03, T:0.61 Consensus pattern (18 bp): TTTTTATTATATTAAAAA Left flanking sequence: Indices 79527 -- 80026 AAAAAAGAAAAAAAAAAAAAAGAAAAAAAAGTGGCACTTAATAAAAAGTTACATTTTGTTATATA TGTTATTACATGTATCAATCCTTATTCTCATAAAAAATGAAAAAAATATATGCCTTTCTAGATCA TACACATAATTATATATATGTCTTATATACAAATAGAATTATTCTTAGCAATTTTTATTTATTAC ATAAAAATATTATTTACTTCAATATATATATATATATATATGTATATACATTTTTAACTTTTCTG TATTATCTTACTTAAAAATAAAGAAAACAAATAAAATAATGTATTTGTATATTTATATTTTTTAT TAATTTTTTTTTTTTTTTTTTTGTGTCTAATATGGAATGCTCATAATAGCTGCTTTGTGTTTATA ACAATTGGACAAGTTCAAATTTTTATAAGAAAAAAAAAAAAACAAATAAAAATATATATACATAT ATATTATAATTTATATATTTTGCGTAGAAACAAATTTTATATTTT Right flanking sequence: Indices 80065 -- 80564 GTATATATATATATATATATATATATATAATACGATGAAGTCCTATTTTTTTTTTTTTTTTTTTT TTTTCTTATATCATTCTTATGGACTTTAATGAAAAAAAGTAACACTTGTCTTTTTATATATACAT AAATTTTTATAACTCCTAATATATATATATATATATATATATATATATATATATATTTATTTATT TATTTATATATTTGTCTTTTGTTATGTCCTCATATTTATCTTCCAAGTATCAAAACAATTTATTG TAATTTTTTTTTCAACCTTCCATTCTATCATATGTATCATATATATATATAACAATATAGAGTTT GTTAATAACAATCTTCTAACTTTTTTTTCTACACCAAGAAAAAAAGTATAATCATTATAATATTA TAAAATATAAAAGTCCAAAAAAAAAAAGTAAATTATATGATATAATATCATTGAATATATGACAT AACGTTTTGAATACAAAAAAATAAATAAATATATATATATATATA Found at i:81645 original size:14 final size:15 Alignment explanation
Indices: 81622--81650 Score: 44 Period size: 14 Copynumber: 2.0 Consensus size: 15 81612 ATAAATAAGC * 81622 AAAATGATATTTATA 1 AAAATGATATTCATA 81637 AAAAT-ATATTCATA 1 AAAATGATATTCATA 81651 TCTACACAAA Statistics Matches: 13, Mismatches: 1, Indels: 1 0.87 0.07 0.07 Matches are distributed among these distances: 14 8 0.62 15 5 0.38 ACGTcount: A:0.55, C:0.03, G:0.03, T:0.38 Consensus pattern (15 bp): AAAATGATATTCATA Left flanking sequence: Indices 81122 -- 81621 TAAGACAAAAAATTTGTACTTCAAAAATGAAAAATTAATAATTAGTCAAAAAATAAAAGAACAAG AAAAAAAAATCAAACCCACCGAAATTATAAATAATTCTTCTTATCTTAAATTAGGTAAGAAGAAC CACACGATACAAACAAAAGAACATTACAATCGTGAAAAGATAAAAGATATATCATATGCAGATAT CAAAAAAAAAGATAAATTAAAAAAAATGCGTATAATCAAAGAACAAGAACATATTAATAATTACA CCTTCGAGAGCGAAAAAAAAAGAATAGAAACAAATAATACACCAAGTATCAAAAATAAACAAAAT ATTGATAACAAAAATAAGATGAAAAAAGTTATACATACAGATCTTATAAAATTATATCCCATACA AAATATAAAAGAAAAATCCCAAATCAATAATACCCTTAATAGAGAAAAGACAAAAAAATATCAAG CACTCAAAAATAATATTAAAAAAATTAAGGCGCAAATAAATAAGC Right flanking sequence: Indices 81651 -- 82150 TCTACACAAATTAATAAAAATAATCAAACGTCTACATATATAAATAAAAAAGTCAACGTTAAAAA TAAAAAAATAATAAATAATGACAATGATAAAATAAAATATCGTATGCTCACACAATATGCTAAAC CCATATTATCATCAAATAATATATCTAATAAAAATGAATATGTTAATGAAGAGAAAAAAAAAATG AACAAAAAAATTAAAATGTTAGCAACAAGGAAAAAAAATAATAATATAAATATAAAAGTAAATAA AATCAAAAATAAAAAGACTGATACTTGTAATCATTATCTCGATGAAGGACCTAATATTATAAAGA GCCAAGAAAGTATCTTATATGATTTAATAAATCAAAAAAAAAACAAAGACAAAATAAAAAAATTC TTACAAAATTCAGACAAGCCAAACAATATAAGTCAGCTAAAGATTCAAGAAAAAGAAAAAAAAAA AAAAAAAATTAAAAAATCACACAAGAGAAAATTTATACATTTGTA Found at i:81854 original size:12 final size:12 Alignment explanation
Indices: 81833--81861 Score: 44 Period size: 12 Copynumber: 2.4 Consensus size: 12 81823 TTAATGAAGA 81833 GAAAAAAAAAAT 1 GAAAAAAAAAAT * 81845 GAACAAAAAAAT 1 GAAAAAAAAAAT * 81857 TAAAA 1 GAAAA 81862 TGTTAGCAAC Statistics Matches: 14, Mismatches: 3, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 12 14 1.00 ACGTcount: A:0.79, C:0.03, G:0.07, T:0.10 Consensus pattern (12 bp): GAAAAAAAAAAT Left flanking sequence: Indices 81333 -- 81832 TTAAAAAAAATGCGTATAATCAAAGAACAAGAACATATTAATAATTACACCTTCGAGAGCGAAAA AAAAAGAATAGAAACAAATAATACACCAAGTATCAAAAATAAACAAAATATTGATAACAAAAATA AGATGAAAAAAGTTATACATACAGATCTTATAAAATTATATCCCATACAAAATATAAAAGAAAAA TCCCAAATCAATAATACCCTTAATAGAGAAAAGACAAAAAAATATCAAGCACTCAAAAATAATAT TAAAAAAATTAAGGCGCAAATAAATAAGCAAAATGATATTTATAAAAATATATTCATATCTACAC AAATTAATAAAAATAATCAAACGTCTACATATATAAATAAAAAAGTCAACGTTAAAAATAAAAAA ATAATAAATAATGACAATGATAAAATAAAATATCGTATGCTCACACAATATGCTAAACCCATATT ATCATCAAATAATATATCTAATAAAAATGAATATGTTAATGAAGA Right flanking sequence: Indices 81862 -- 82361 TGTTAGCAACAAGGAAAAAAAATAATAATATAAATATAAAAGTAAATAAAATCAAAAATAAAAAG ACTGATACTTGTAATCATTATCTCGATGAAGGACCTAATATTATAAAGAGCCAAGAAAGTATCTT ATATGATTTAATAAATCAAAAAAAAAACAAAGACAAAATAAAAAAATTCTTACAAAATTCAGACA AGCCAAACAATATAAGTCAGCTAAAGATTCAAGAAAAAGAAAAAAAAAAAAAAAAAATTAAAAAA TCACACAAGAGAAAATTTATACATTTGTATATATCTTCACAGGATAATATAAAAGTAGAATCAAA TAAAAAGAATAGTAAAGACAAAGATTCTAATCATAACGAACCTATTGTACAATTAAAAAAAAAAA AAAGAAAAATTCAAACAAATAAACCAAATGAAACTATCGATAGAATAATAAAAAAAAAAGAAACT CCACAATAAAATGTATAGTACAAAAAATATGTCAGAGTAATACAT Found at i:81920 original size:24 final size:23 Alignment explanation
Indices: 81881--81926 Score: 60 Period size: 24 Copynumber: 2.0 Consensus size: 23 81871 CAAGGAAAAA * 81881 AAATAATAATATAAATATAAAAGT 1 AAATAATAATAAAAATA-AAAAGT 81905 AAATAA-AATCAAAAATAAAAAG 1 AAATAATAAT-AAAAATAAAAAG 81927 ACTGATACTT Statistics Matches: 20, Mismatches: 1, Indels: 3 0.83 0.04 0.12 Matches are distributed among these distances: 23 8 0.40 24 12 0.60 ACGTcount: A:0.72, C:0.02, G:0.04, T:0.22 Consensus pattern (23 bp): AAATAATAATAAAAATAAAAAGT Left flanking sequence: Indices 81381 -- 81880 ACCTTCGAGAGCGAAAAAAAAAGAATAGAAACAAATAATACACCAAGTATCAAAAATAAACAAAA TATTGATAACAAAAATAAGATGAAAAAAGTTATACATACAGATCTTATAAAATTATATCCCATAC AAAATATAAAAGAAAAATCCCAAATCAATAATACCCTTAATAGAGAAAAGACAAAAAAATATCAA GCACTCAAAAATAATATTAAAAAAATTAAGGCGCAAATAAATAAGCAAAATGATATTTATAAAAA TATATTCATATCTACACAAATTAATAAAAATAATCAAACGTCTACATATATAAATAAAAAAGTCA ACGTTAAAAATAAAAAAATAATAAATAATGACAATGATAAAATAAAATATCGTATGCTCACACAA TATGCTAAACCCATATTATCATCAAATAATATATCTAATAAAAATGAATATGTTAATGAAGAGAA AAAAAAAATGAACAAAAAAATTAAAATGTTAGCAACAAGGAAAAA Right flanking sequence: Indices 81927 -- 82426 ACTGATACTTGTAATCATTATCTCGATGAAGGACCTAATATTATAAAGAGCCAAGAAAGTATCTT ATATGATTTAATAAATCAAAAAAAAAACAAAGACAAAATAAAAAAATTCTTACAAAATTCAGACA AGCCAAACAATATAAGTCAGCTAAAGATTCAAGAAAAAGAAAAAAAAAAAAAAAAAATTAAAAAA TCACACAAGAGAAAATTTATACATTTGTATATATCTTCACAGGATAATATAAAAGTAGAATCAAA TAAAAAGAATAGTAAAGACAAAGATTCTAATCATAACGAACCTATTGTACAATTAAAAAAAAAAA AAAGAAAAATTCAAACAAATAAACCAAATGAAACTATCGATAGAATAATAAAAAAAAAAGAAACT CCACAATAAAATGTATAGTACAAAAAATATGTCAGAGTAATACATACAATAATAATAATAATAAT AAAAAGAAAGATATGCATATAAATATAAAAAAAAAAGAAAATAGT Found at i:82029 original size:11 final size:11 Alignment explanation
Indices: 82004--82037 Score: 40 Period size: 11 Copynumber: 3.1 Consensus size: 11 81994 ATGATTTAAT * 82004 AAATCAAAAAA 1 AAAACAAAAAA * * 82015 AAAACAAAGAC 1 AAAACAAAAAA * 82026 AAAATAAAAAA 1 AAAACAAAAAA 82037 A 1 A 82038 TTCTTACAAA Statistics Matches: 17, Mismatches: 6, Indels: 0 0.74 0.26 0.00 Matches are distributed among these distances: 11 17 1.00 ACGTcount: A:0.82, C:0.09, G:0.03, T:0.06 Consensus pattern (11 bp): AAAACAAAAAA Left flanking sequence: Indices 81504 -- 82003 CCCATACAAAATATAAAAGAAAAATCCCAAATCAATAATACCCTTAATAGAGAAAAGACAAAAAA ATATCAAGCACTCAAAAATAATATTAAAAAAATTAAGGCGCAAATAAATAAGCAAAATGATATTT ATAAAAATATATTCATATCTACACAAATTAATAAAAATAATCAAACGTCTACATATATAAATAAA AAAGTCAACGTTAAAAATAAAAAAATAATAAATAATGACAATGATAAAATAAAATATCGTATGCT CACACAATATGCTAAACCCATATTATCATCAAATAATATATCTAATAAAAATGAATATGTTAATG AAGAGAAAAAAAAAATGAACAAAAAAATTAAAATGTTAGCAACAAGGAAAAAAAATAATAATATA AATATAAAAGTAAATAAAATCAAAAATAAAAAGACTGATACTTGTAATCATTATCTCGATGAAGG ACCTAATATTATAAAGAGCCAAGAAAGTATCTTATATGATTTAAT Right flanking sequence: Indices 82038 -- 82537 TTCTTACAAAATTCAGACAAGCCAAACAATATAAGTCAGCTAAAGATTCAAGAAAAAGAAAAAAA AAAAAAAAAAATTAAAAAATCACACAAGAGAAAATTTATACATTTGTATATATCTTCACAGGATA ATATAAAAGTAGAATCAAATAAAAAGAATAGTAAAGACAAAGATTCTAATCATAACGAACCTATT GTACAATTAAAAAAAAAAAAAAGAAAAATTCAAACAAATAAACCAAATGAAACTATCGATAGAAT AATAAAAAAAAAAGAAACTCCACAATAAAATGTATAGTACAAAAAATATGTCAGAGTAATACATA CAATAATAATAATAATAATAAAAAGAAAGATATGCATATAAATATAAAAAAAAAAGAAAATAGTA ATCATATTCTTTTTTATGATCATAATAACATGTCATGTAATCACAAAATAAAAAATATTATATAT CCGGAATATACAAATCAAAAGCAAGACACAACATATTATCATAAT Found at i:82057 original size:11 final size:11 Alignment explanation
Indices: 82034--82057 Score: 34 Period size: 11 Copynumber: 2.2 Consensus size: 11 82024 ACAAAATAAA ** 82034 AAAATTCTTAC 1 AAAATTCAGAC 82045 AAAATTCAGAC 1 AAAATTCAGAC 82056 AA 1 AA 82058 GCCAAACAAT Statistics Matches: 11, Mismatches: 2, Indels: 0 0.85 0.15 0.00 Matches are distributed among these distances: 11 11 1.00 ACGTcount: A:0.54, C:0.17, G:0.04, T:0.25 Consensus pattern (11 bp): AAAATTCAGAC Left flanking sequence: Indices 81534 -- 82033 ATCAATAATACCCTTAATAGAGAAAAGACAAAAAAATATCAAGCACTCAAAAATAATATTAAAAA AATTAAGGCGCAAATAAATAAGCAAAATGATATTTATAAAAATATATTCATATCTACACAAATTA ATAAAAATAATCAAACGTCTACATATATAAATAAAAAAGTCAACGTTAAAAATAAAAAAATAATA AATAATGACAATGATAAAATAAAATATCGTATGCTCACACAATATGCTAAACCCATATTATCATC AAATAATATATCTAATAAAAATGAATATGTTAATGAAGAGAAAAAAAAAATGAACAAAAAAATTA AAATGTTAGCAACAAGGAAAAAAAATAATAATATAAATATAAAAGTAAATAAAATCAAAAATAAA AAGACTGATACTTGTAATCATTATCTCGATGAAGGACCTAATATTATAAAGAGCCAAGAAAGTAT CTTATATGATTTAATAAATCAAAAAAAAAACAAAGACAAAATAAA Right flanking sequence: Indices 82058 -- 82557 GCCAAACAATATAAGTCAGCTAAAGATTCAAGAAAAAGAAAAAAAAAAAAAAAAAATTAAAAAAT CACACAAGAGAAAATTTATACATTTGTATATATCTTCACAGGATAATATAAAAGTAGAATCAAAT AAAAAGAATAGTAAAGACAAAGATTCTAATCATAACGAACCTATTGTACAATTAAAAAAAAAAAA AAGAAAAATTCAAACAAATAAACCAAATGAAACTATCGATAGAATAATAAAAAAAAAAGAAACTC CACAATAAAATGTATAGTACAAAAAATATGTCAGAGTAATACATACAATAATAATAATAATAATA AAAAGAAAGATATGCATATAAATATAAAAAAAAAAGAAAATAGTAATCATATTCTTTTTTATGAT CATAATAACATGTCATGTAATCACAAAATAAAAAATATTATATATCCGGAATATACAAATCAAAA GCAAGACACAACATATTATCATAATATTAAAGACAAATATCAAGC Found at i:82945 original size:12 final size:12 Alignment explanation
Indices: 82927--82956 Score: 44 Period size: 12 Copynumber: 2.5 Consensus size: 12 82917 TATATGAAAA 82927 AAATAAA-ACAT 1 AAATAAACACAT 82938 ATAATAAACACAT 1 A-AATAAACACAT 82951 AAATAA 1 AAATAA 82957 TTACAAGGAG Statistics Matches: 17, Mismatches: 0, Indels: 3 0.85 0.00 0.15 Matches are distributed among these distances: 11 1 0.06 12 11 0.65 13 5 0.29 ACGTcount: A:0.70, C:0.10, G:0.00, T:0.20 Consensus pattern (12 bp): AAATAAACACAT Left flanking sequence: Indices 82427 -- 82926 AATCATATTCTTTTTTATGATCATAATAACATGTCATGTAATCACAAAATAAAAAATATTATATA TCCGGAATATACAAATCAAAAGCAAGACACAACATATTATCATAATATTAAAGACAAATATCAAG CTTATAAAAAAGAAAATCAAAATGGAGGAGAATGCATAAAGTATAAAAATATACATACAAATAAT GACAAAAAAGAAAACATAGTATTCCATATAAATAATCAAAATGAACAAATATATGAAAAAAATAC AAACATGAATAAATATAATAATGTTGATTGTTCAGCATATCAACAAAAACGAGTTGATGTTAAGT CTACCAGAGTAACACATAAATCTAATAATATAATTACATCAGATAATAATATTAAACAAGATGAG AAGAAATTAAAAAGTTTGAACGTATACAAAATAATACATAATATAAATAAAGAAACAACATATAA TATTGCCTCAAATATAAAAGCCAATATTTCACATATATATGAAAA Right flanking sequence: Indices 82957 -- 83456 TTACAAGGAGTACAAGAAAATAGATCCAATATCTTTTAATAATACAATACAACCAAATAATTTAG AAAAAAAAAATGCCTCATCAAATATATCTAAATGTAGATATTTATATAAGCATATATACATGAAC AAGGATAACCAAAAAATAGAAGGGAATAATGTTAATATAAACAAGAACATAAATATGAATAATAT GAATAATATGAATAATATGAATAATATAAATAGTATAAATAGTATAAATTATATAAATGAAAAAC AAAAATTATATTACAAAATGGTGTCGGAGAAACATAAGGGTATTAAAAATGAATTCATCGAACTA GAACCCAAAAATAAAAAAAATAAAAATAAAAATAAAATAAATAAAATTATTAAGGACAAAAGGAA AGTATATACACCAATAAAAAAAATAATAAAAAAAAAATATATTTTTATATATGATAAAACAAAAA TATTCACAAGAAAAAAACATCATTCCATTATTATAATAGTAAATA i:83308 original size:15 final size:15 Alignment explanation
Indices: 83288--83327 Score: 59 Period size: 15 Copynumber: 2.7 Consensus size: 15 83278 ACTAGAACCC * 83288 AAAAATAAAAAAAAT 1 AAAAATAAAAAAAAA * 83303 AAAAATAAAAATAAA 1 AAAAATAAAAAAAAA * 83318 ATAAATAAAA 1 AAAAATAAAA 83328 TTATTAAGGA Statistics Matches: 22, Mismatches: 3, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 15 22 1.00 ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15 Consensus pattern (15 bp): AAAAATAAAAAAAAA Left flanking sequence: Indices 82788 -- 83287 CATCAGATAATAATATTAAACAAGATGAGAAGAAATTAAAAAGTTTGAACGTATACAAAATAATA CATAATATAAATAAAGAAACAACATATAATATTGCCTCAAATATAAAAGCCAATATTTCACATAT ATATGAAAAAAATAAAACATATAATAAACACATAAATAATTACAAGGAGTACAAGAAAATAGATC CAATATCTTTTAATAATACAATACAACCAAATAATTTAGAAAAAAAAAATGCCTCATCAAATATA TCTAAATGTAGATATTTATATAAGCATATATACATGAACAAGGATAACCAAAAAATAGAAGGGAA TAATGTTAATATAAACAAGAACATAAATATGAATAATATGAATAATATGAATAATATGAATAATA TAAATAGTATAAATAGTATAAATTATATAAATGAAAAACAAAAATTATATTACAAAATGGTGTCG GAGAAACATAAGGGTATTAAAAATGAATTCATCGAACTAGAACCC Right flanking sequence: Indices 83328 -- 83827 TTATTAAGGACAAAAGGAAAGTATATACACCAATAAAAAAAATAATAAAAAAAAAATATATTTTT ATATATGATAAAACAAAAATATTCACAAGAAAAAAACATCATTCCATTATTATAATAGTAAATAA ATTTAAAATTAAGGAACATAACTTATTATTATTTTTAAACAAAACAAAGTTAAATAAATATATAC CTAAGGTAGAAAATAATACAGATATTCAAAATAATACTATTTTAAATAAAGACAATTTATATATA CCATGTATAAAATATGGTAAATACATTTCTTGGATACAAAAAATGTGCTACTTATATTTTCTAAT TCAAATAATGAAGAAGAACAAAATGGAACAGAATAAAAAAGGTTTAAATAATTATATAAGTATAC AAAAAAGGCAAAAAGAAAAAAAAAAAAAAAAAAATAATAATAATAATAATAATAATAATAATAAT AATAATTTAATTGTTAATATATATAATAAATCTGCAAATGTATAT Found at i:83314 original size:12 final size:11 Alignment explanation
Indices: 83288--83322 Score: 49 Period size: 11 Copynumber: 3.3 Consensus size: 11 83278 ACTAGAACCC 83288 AAAAATAAAA- 1 AAAAATAAAAT ** 83298 AAAATAAAAAT 1 AAAAATAAAAT 83309 AAAAATAAAAT 1 AAAAATAAAAT 83320 AAA 1 AAA 83323 TAAAATTATT Statistics Matches: 20, Mismatches: 4, Indels: 1 0.80 0.16 0.04 Matches are distributed among these distances: 10 8 0.40 11 12 0.60 ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14 Consensus pattern (11 bp): AAAAATAAAAT Left flanking sequence: Indices 82788 -- 83287 CATCAGATAATAATATTAAACAAGATGAGAAGAAATTAAAAAGTTTGAACGTATACAAAATAATA CATAATATAAATAAAGAAACAACATATAATATTGCCTCAAATATAAAAGCCAATATTTCACATAT ATATGAAAAAAATAAAACATATAATAAACACATAAATAATTACAAGGAGTACAAGAAAATAGATC CAATATCTTTTAATAATACAATACAACCAAATAATTTAGAAAAAAAAAATGCCTCATCAAATATA TCTAAATGTAGATATTTATATAAGCATATATACATGAACAAGGATAACCAAAAAATAGAAGGGAA TAATGTTAATATAAACAAGAACATAAATATGAATAATATGAATAATATGAATAATATGAATAATA TAAATAGTATAAATAGTATAAATTATATAAATGAAAAACAAAAATTATATTACAAAATGGTGTCG GAGAAACATAAGGGTATTAAAAATGAATTCATCGAACTAGAACCC Right flanking sequence: Indices 83323 -- 83822 TAAAATTATTAAGGACAAAAGGAAAGTATATACACCAATAAAAAAAATAATAAAAAAAAAATATA TTTTTATATATGATAAAACAAAAATATTCACAAGAAAAAAACATCATTCCATTATTATAATAGTA AATAAATTTAAAATTAAGGAACATAACTTATTATTATTTTTAAACAAAACAAAGTTAAATAAATA TATACCTAAGGTAGAAAATAATACAGATATTCAAAATAATACTATTTTAAATAAAGACAATTTAT ATATACCATGTATAAAATATGGTAAATACATTTCTTGGATACAAAAAATGTGCTACTTATATTTT CTAATTCAAATAATGAAGAAGAACAAAATGGAACAGAATAAAAAAGGTTTAAATAATTATATAAG TATACAAAAAAGGCAAAAAGAAAAAAAAAAAAAAAAAAATAATAATAATAATAATAATAATAATA ATAATAATAATTTAATTGTTAATATATATAATAAATCTGCAAATG Found at i:83379 original size:11 final size:11 Alignment explanation
Indices: 83359--83385 Score: 45 Period size: 12 Copynumber: 2.4 Consensus size: 11 83349 TATATACACC 83359 AATAAAAAAAA 1 AATAAAAAAAA 83370 TAATAAAAAAAA 1 -AATAAAAAAAA 83382 AATA 1 AATA 83386 TATTTTTATA Statistics Matches: 15, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 11 4 0.27 12 11 0.73 ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15 Consensus pattern (11 bp): AATAAAAAAAA Left flanking sequence: Indices 82859 -- 83358 ATAAATAAAGAAACAACATATAATATTGCCTCAAATATAAAAGCCAATATTTCACATATATATGA AAAAAATAAAACATATAATAAACACATAAATAATTACAAGGAGTACAAGAAAATAGATCCAATAT CTTTTAATAATACAATACAACCAAATAATTTAGAAAAAAAAAATGCCTCATCAAATATATCTAAA TGTAGATATTTATATAAGCATATATACATGAACAAGGATAACCAAAAAATAGAAGGGAATAATGT TAATATAAACAAGAACATAAATATGAATAATATGAATAATATGAATAATATGAATAATATAAATA GTATAAATAGTATAAATTATATAAATGAAAAACAAAAATTATATTACAAAATGGTGTCGGAGAAA CATAAGGGTATTAAAAATGAATTCATCGAACTAGAACCCAAAAATAAAAAAAATAAAAATAAAAA TAAAATAAATAAAATTATTAAGGACAAAAGGAAAGTATATACACC Right flanking sequence: Indices 83386 -- 83885 TATTTTTATATATGATAAAACAAAAATATTCACAAGAAAAAAACATCATTCCATTATTATAATAG TAAATAAATTTAAAATTAAGGAACATAACTTATTATTATTTTTAAACAAAACAAAGTTAAATAAA TATATACCTAAGGTAGAAAATAATACAGATATTCAAAATAATACTATTTTAAATAAAGACAATTT ATATATACCATGTATAAAATATGGTAAATACATTTCTTGGATACAAAAAATGTGCTACTTATATT TTCTAATTCAAATAATGAAGAAGAACAAAATGGAACAGAATAAAAAAGGTTTAAATAATTATATA AGTATACAAAAAAGGCAAAAAGAAAAAAAAAAAAAAAAAAATAATAATAATAATAATAATAATAA TAATAATAATAATTTAATTGTTAATATATATAATAAATCTGCAAATGTATATGTAAATATCCATG TAAATATAAAAAAATATATGGTTTTATATAAAATATGCATATTTA Found at i:84028 original size:14 final size:14 Alignment explanation
Indices: 84011--84048 Score: 48 Period size: 13 Copynumber: 2.8 Consensus size: 14 84001 TAATTGTAAC 84011 AAAGAAATTCAAAA 1 AAAGAAATTCAAAA ** 84025 AAAGAAA-AAAAAA 1 AAAGAAATTCAAAA * 84038 AAAAAAATTCA 1 AAAGAAATTCA 84049 TATCAATATA Statistics Matches: 18, Mismatches: 5, Indels: 2 0.72 0.20 0.08 Matches are distributed among these distances: 13 10 0.56 14 8 0.44 ACGTcount: A:0.79, C:0.05, G:0.05, T:0.11 Consensus pattern (14 bp): AAAGAAATTCAAAA Left flanking sequence: Indices 83511 -- 84010 ATAAATATATACCTAAGGTAGAAAATAATACAGATATTCAAAATAATACTATTTTAAATAAAGAC AATTTATATATACCATGTATAAAATATGGTAAATACATTTCTTGGATACAAAAAATGTGCTACTT ATATTTTCTAATTCAAATAATGAAGAAGAACAAAATGGAACAGAATAAAAAAGGTTTAAATAATT ATATAAGTATACAAAAAAGGCAAAAAGAAAAAAAAAAAAAAAAAAATAATAATAATAATAATAAT AATAATAATAATAATAATTTAATTGTTAATATATATAATAAATCTGCAAATGTATATGTAAATAT CCATGTAAATATAAAAAAATATATGGTTTTATATAAAATATGCATATTTATGCTCACATGTTTAA TACAAACAATATATATAAACAATAAATACATTACATATATATACAATATAAAAAAAGAAAATATC ACAAATTGTGTTCTATATAAATCTATAATATATAATAATTGTAAC Right flanking sequence: Indices 84049 -- 84548 TATCAATATAATAAAAGACAATAAGTTAAATCATATGATAATTCAAAATAAAAATATTATCATAG TCAATAAAATATATACTAATATATACATAATCAAATACAATAATATAAGCAAAATATATATTATT ATCATTGTAAAAAATATATTCTTTACGAAAATTATATTCATTAATATATATCATATATATTATAA AAATTATTATTATATATATATTATAACTATAAATATGAAGTACTTAGACAGAATCAATAAATCAC CTAACGACAATCATAAAATTAGGTGTTATCAAGATAGGTACATAAAATATGATATTAAAATTAGA AAGAAAAAAATATATCTATATATTATATATTTATATTATTATATAATAAATCATCTACGTTTCTT TTTATATAACCAAGATATAATAAAATATATACATACATATATTATAAAAACAAATAAAATTCATA GACATCTGAATAAAGTCATTTTCTATAAAAGACGATTCATAAAAA Found at i:84136 original size:10 final size:11 Alignment explanation
Indices: 84121--84173 Score: 53 Period size: 11 Copynumber: 4.7 Consensus size: 11 84111 TAGTCAATAA 84121 AATATATAC-T 1 AATATATACAT 84131 AATATATACAT 1 AATATATACAT * 84142 AATCAAATACAAT 1 AAT-ATATAC-AT ** * 84155 AATATAAGCAA 1 AATATATACAT 84166 AATATATA 1 AATATATA 84174 TTATTATCAT Statistics Matches: 33, Mismatches: 7, Indels: 5 0.73 0.16 0.11 Matches are distributed among these distances: 10 9 0.27 11 11 0.33 12 8 0.24 13 5 0.15 ACGTcount: A:0.58, C:0.09, G:0.02, T:0.30 Consensus pattern (11 bp): AATATATACAT Left flanking sequence: Indices 83621 -- 84120 ATACAAAAAATGTGCTACTTATATTTTCTAATTCAAATAATGAAGAAGAACAAAATGGAACAGAA TAAAAAAGGTTTAAATAATTATATAAGTATACAAAAAAGGCAAAAAGAAAAAAAAAAAAAAAAAA ATAATAATAATAATAATAATAATAATAATAATAATAATTTAATTGTTAATATATATAATAAATCT GCAAATGTATATGTAAATATCCATGTAAATATAAAAAAATATATGGTTTTATATAAAATATGCAT ATTTATGCTCACATGTTTAATACAAACAATATATATAAACAATAAATACATTACATATATATACA ATATAAAAAAAGAAAATATCACAAATTGTGTTCTATATAAATCTATAATATATAATAATTGTAAC AAAGAAATTCAAAAAAAGAAAAAAAAAAAAAAAATTCATATCAATATAATAAAAGACAATAAGTT AAATCATATGATAATTCAAAATAAAAATATTATCATAGTCAATAA Right flanking sequence: Indices 84174 -- 84673 TTATTATCATTGTAAAAAATATATTCTTTACGAAAATTATATTCATTAATATATATCATATATAT TATAAAAATTATTATTATATATATATTATAACTATAAATATGAAGTACTTAGACAGAATCAATAA ATCACCTAACGACAATCATAAAATTAGGTGTTATCAAGATAGGTACATAAAATATGATATTAAAA TTAGAAAGAAAAAAATATATCTATATATTATATATTTATATTATTATATAATAAATCATCTACGT TTCTTTTTATATAACCAAGATATAATAAAATATATACATACATATATTATAAAAACAAATAAAAT TCATAGACATCTGAATAAAGTCATTTTCTATAAAAGACGATTCATAAAAAAAAAAATTTCTATAT GTATTCAAAATAAAAAAAAAAAAAAAATGAATATATTGAGCATTATGAAATTTAATTATATACAT GATGATTTATATAAAAAAAATAGTTATATGAATTATCAAATATTT Found at